Query 025812
Match_columns 247
No_of_seqs 191 out of 1956
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02832 glutamine amidotransf 100.0 8.6E-46 1.9E-50 320.3 25.0 241 1-247 2-248 (248)
2 COG0118 HisH Glutamine amidotr 100.0 6.4E-46 1.4E-50 307.6 19.1 190 1-207 2-203 (204)
3 PRK13142 hisH imidazole glycer 100.0 4.2E-37 9.2E-42 257.6 18.2 178 2-205 1-186 (192)
4 CHL00188 hisH imidazole glycer 100.0 3.8E-36 8.2E-41 256.0 19.1 195 1-206 2-209 (210)
5 PRK14004 hisH imidazole glycer 100.0 3.9E-34 8.5E-39 243.6 19.6 192 2-206 1-209 (210)
6 PRK13170 hisH imidazole glycer 100.0 7.6E-34 1.6E-38 239.6 18.2 185 1-205 1-195 (196)
7 COG0311 PDX2 Predicted glutami 100.0 3.1E-33 6.7E-38 228.0 19.8 191 1-209 1-192 (194)
8 PRK13526 glutamine amidotransf 100.0 1.9E-32 4.1E-37 226.2 20.0 176 1-205 3-178 (179)
9 PRK13146 hisH imidazole glycer 100.0 2.7E-32 5.8E-37 232.4 19.1 190 1-206 2-207 (209)
10 PF01174 SNO: SNO glutamine am 100.0 5.6E-32 1.2E-36 222.7 17.8 183 5-208 1-187 (188)
11 PRK13181 hisH imidazole glycer 100.0 2.8E-31 6.1E-36 224.3 19.4 186 2-205 1-198 (199)
12 PRK13525 glutamine amidotransf 100.0 1.3E-30 2.9E-35 218.7 22.1 181 1-208 2-188 (189)
13 PRK13152 hisH imidazole glycer 100.0 2.9E-31 6.3E-36 224.7 17.6 188 2-205 1-200 (201)
14 TIGR03800 PLP_synth_Pdx2 pyrid 100.0 1.1E-30 2.3E-35 218.4 20.7 184 2-205 1-184 (184)
15 PRK13143 hisH imidazole glycer 100.0 2.1E-29 4.5E-34 213.2 19.6 188 1-208 1-199 (200)
16 cd01749 GATase1_PB Glutamine A 100.0 3.2E-29 7E-34 209.3 19.8 183 3-204 1-183 (183)
17 PLN02617 imidazole glycerol ph 100.0 3E-29 6.6E-34 238.6 19.8 192 2-209 8-212 (538)
18 cd01748 GATase1_IGP_Synthase T 100.0 3.6E-29 7.8E-34 211.2 16.8 186 3-204 1-198 (198)
19 TIGR01855 IMP_synth_hisH imida 100.0 8.4E-29 1.8E-33 208.9 17.9 184 3-205 1-195 (196)
20 PRK13141 hisH imidazole glycer 100.0 1.5E-28 3.2E-33 208.6 19.0 191 2-208 1-203 (205)
21 KOG0623 Glutamine amidotransfe 100.0 6.4E-29 1.4E-33 219.0 14.6 197 3-216 4-226 (541)
22 PRK13527 glutamine amidotransf 100.0 2.9E-27 6.3E-32 200.0 22.0 184 1-208 1-198 (200)
23 PRK06895 putative anthranilate 99.9 3.8E-26 8.2E-31 191.7 14.2 169 1-206 2-188 (190)
24 COG0512 PabA Anthranilate/para 99.9 1.4E-24 3.1E-29 179.3 16.7 167 1-207 2-191 (191)
25 TIGR00888 guaA_Nterm GMP synth 99.9 4.5E-24 9.7E-29 178.7 13.5 166 3-206 1-183 (188)
26 PRK00758 GMP synthase subunit 99.9 6.7E-24 1.5E-28 177.0 13.1 166 2-210 1-184 (184)
27 cd01742 GATase1_GMP_Synthase T 99.9 2E-23 4.4E-28 173.3 13.6 164 3-204 1-181 (181)
28 KOG3210 Imidazoleglycerol-phos 99.9 1.4E-23 3.1E-28 168.6 12.1 195 2-206 13-218 (226)
29 PRK06774 para-aminobenzoate sy 99.9 1.3E-22 2.8E-27 170.4 16.8 166 2-205 1-190 (191)
30 CHL00101 trpG anthranilate syn 99.9 2.1E-22 4.6E-27 169.1 16.4 167 2-206 1-188 (190)
31 PRK07649 para-aminobenzoate/an 99.9 2.5E-22 5.5E-27 169.3 16.9 170 2-209 1-190 (195)
32 PRK07765 para-aminobenzoate sy 99.9 6.7E-22 1.5E-26 169.0 18.0 172 1-209 1-194 (214)
33 PRK05670 anthranilate synthase 99.9 3.3E-22 7.2E-27 167.6 15.7 169 2-208 1-189 (189)
34 PRK08007 para-aminobenzoate sy 99.9 6.5E-22 1.4E-26 165.8 17.2 165 2-205 1-186 (187)
35 PRK06490 glutamine amidotransf 99.9 2.7E-22 5.9E-27 174.1 14.4 170 1-206 8-192 (239)
36 PLN02347 GMP synthetase 99.9 2.7E-22 5.9E-27 191.3 14.8 168 2-206 12-201 (536)
37 cd01743 GATase1_Anthranilate_S 99.9 1.4E-21 3E-26 163.0 16.4 163 3-204 1-184 (184)
38 COG0518 GuaA GMP synthase - Gl 99.9 7.5E-22 1.6E-26 166.5 13.7 168 2-205 3-191 (198)
39 TIGR00566 trpG_papA glutamine 99.9 2.7E-21 5.8E-26 162.1 16.0 166 2-205 1-187 (188)
40 PLN02335 anthranilate synthase 99.9 3.7E-21 8E-26 165.3 16.8 178 1-212 19-218 (222)
41 PRK05637 anthranilate synthase 99.9 8.2E-21 1.8E-25 161.6 18.3 84 1-89 2-91 (208)
42 PF00117 GATase: Glutamine ami 99.9 1.2E-21 2.6E-26 163.9 12.0 168 4-206 1-191 (192)
43 PRK08250 glutamine amidotransf 99.9 6.1E-21 1.3E-25 165.3 16.4 174 1-207 1-194 (235)
44 TIGR01815 TrpE-clade3 anthrani 99.9 2.7E-21 5.9E-26 189.6 15.7 170 1-208 517-709 (717)
45 PRK07053 glutamine amidotransf 99.9 3E-21 6.5E-26 167.1 13.8 169 1-205 3-190 (234)
46 PRK00074 guaA GMP synthase; Re 99.9 1.9E-21 4E-26 185.4 13.2 166 2-205 5-187 (511)
47 PRK08857 para-aminobenzoate sy 99.9 2.6E-20 5.5E-25 156.8 18.5 167 2-206 1-192 (193)
48 cd03130 GATase1_CobB Type 1 gl 99.9 2E-20 4.4E-25 158.1 15.3 175 11-204 12-198 (198)
49 PRK09065 glutamine amidotransf 99.8 6.3E-21 1.4E-25 165.4 11.8 171 1-206 2-199 (237)
50 PRK05665 amidotransferase; Pro 99.8 1.4E-19 3E-24 157.2 19.3 162 1-197 3-192 (240)
51 PRK09522 bifunctional glutamin 99.8 5E-20 1.1E-24 175.9 17.4 175 1-214 2-197 (531)
52 PRK13566 anthranilate synthase 99.8 6.1E-20 1.3E-24 180.4 17.9 170 1-208 527-719 (720)
53 TIGR01737 FGAM_synth_I phospho 99.8 7.1E-20 1.5E-24 157.8 13.2 87 1-87 1-94 (227)
54 cd01741 GATase1_1 Subgroup of 99.8 6.4E-20 1.4E-24 153.2 11.8 167 2-204 1-188 (188)
55 PLN02889 oxo-acid-lyase/anthra 99.8 5.3E-19 1.1E-23 176.0 17.3 84 1-89 82-180 (918)
56 cd01744 GATase1_CPSase Small c 99.8 1.4E-18 3E-23 144.4 16.5 82 3-89 1-87 (178)
57 PRK03619 phosphoribosylformylg 99.8 5.9E-19 1.3E-23 151.3 13.8 98 1-110 1-106 (219)
58 TIGR01823 PabB-fungal aminodeo 99.8 2.6E-18 5.6E-23 169.8 19.9 176 1-214 6-211 (742)
59 PRK12838 carbamoyl phosphate s 99.8 3.4E-18 7.4E-23 155.7 18.9 162 2-209 169-352 (354)
60 TIGR01368 CPSaseIIsmall carbam 99.8 2.6E-18 5.5E-23 156.7 17.4 82 2-89 175-261 (358)
61 PRK07567 glutamine amidotransf 99.8 1.1E-18 2.5E-23 151.7 14.1 172 1-205 1-202 (242)
62 CHL00197 carA carbamoyl-phosph 99.8 8.2E-18 1.8E-22 154.3 19.7 83 1-88 193-280 (382)
63 COG1797 CobB Cobyrinic acid a, 99.8 8.5E-19 1.8E-23 160.5 13.1 187 2-208 247-451 (451)
64 PRK12564 carbamoyl phosphate s 99.8 9.9E-18 2.1E-22 153.1 19.2 83 1-88 178-265 (360)
65 cd01750 GATase1_CobQ Type 1 gl 99.8 3.1E-18 6.7E-23 144.3 14.0 106 3-109 1-114 (194)
66 PRK14607 bifunctional glutamin 99.8 9.2E-18 2E-22 160.9 17.1 168 3-208 2-190 (534)
67 COG0505 CarA Carbamoylphosphat 99.8 2.6E-17 5.6E-22 147.0 16.8 166 2-212 181-367 (368)
68 cd01747 GATase1_Glutamyl_Hydro 99.8 5.4E-18 1.2E-22 149.9 11.4 76 14-89 24-110 (273)
69 TIGR00379 cobB cobyrinic acid 99.7 5.8E-17 1.3E-21 152.6 17.9 188 2-208 246-448 (449)
70 cd01745 GATase1_2 Subgroup of 99.7 1.3E-17 2.8E-22 139.9 11.2 139 14-204 23-189 (189)
71 COG0047 PurL Phosphoribosylfor 99.7 2.4E-17 5.2E-22 139.3 12.7 98 1-110 3-108 (231)
72 PRK00784 cobyric acid synthase 99.7 1.1E-16 2.3E-21 152.2 16.4 181 2-209 253-448 (488)
73 PRK01077 cobyrinic acid a,c-di 99.7 1.8E-16 4E-21 149.3 17.5 190 2-209 247-450 (451)
74 PLN02771 carbamoyl-phosphate s 99.7 1.7E-16 3.7E-21 146.3 16.0 81 2-88 242-327 (415)
75 PRK13896 cobyrinic acid a,c-di 99.7 4.2E-16 9E-21 145.5 16.7 181 2-206 235-432 (433)
76 PRK01175 phosphoribosylformylg 99.7 2.6E-16 5.7E-21 138.1 13.8 85 1-87 4-105 (261)
77 PRK11366 puuD gamma-glutamyl-g 99.7 4.6E-16 9.9E-21 136.3 14.2 76 14-89 30-125 (254)
78 PRK06186 hypothetical protein; 99.7 1.3E-16 2.8E-21 136.8 7.5 82 2-88 3-99 (229)
79 COG2071 Predicted glutamine am 99.6 1.7E-15 3.7E-20 129.3 10.9 176 14-210 30-241 (243)
80 KOG0026 Anthranilate synthase, 99.6 9E-15 1.9E-19 117.8 13.6 169 3-208 21-215 (223)
81 PRK06278 cobyrinic acid a,c-di 99.6 4.6E-15 9.9E-20 139.9 12.8 97 1-106 1-104 (476)
82 PRK05380 pyrG CTP synthetase; 99.6 1.2E-14 2.6E-19 137.5 13.9 83 2-89 290-390 (533)
83 PF07685 GATase_3: CobB/CobQ-l 99.6 1.9E-14 4.1E-19 117.4 11.9 77 33-109 3-85 (158)
84 TIGR00313 cobQ cobyric acid sy 99.6 4.2E-14 9.1E-19 134.0 15.1 178 2-209 249-439 (475)
85 cd01740 GATase1_FGAR_AT Type 1 99.6 2.2E-14 4.8E-19 124.5 10.6 85 3-87 1-98 (238)
86 TIGR00337 PyrG CTP synthase. C 99.5 8.7E-14 1.9E-18 131.6 14.6 83 2-89 291-390 (525)
87 PF07722 Peptidase_C26: Peptid 99.5 4.8E-14 1E-18 120.8 10.9 76 14-89 28-124 (217)
88 PF13507 GATase_5: CobB/CobQ-l 99.5 6.8E-14 1.5E-18 122.6 11.1 87 1-87 2-106 (259)
89 PLN02327 CTP synthase 99.5 2.2E-13 4.8E-18 129.2 13.5 83 2-89 299-409 (557)
90 COG0504 PyrG CTP synthase (UTP 99.5 2.3E-13 5.1E-18 126.0 11.9 82 2-88 290-389 (533)
91 KOG1622 GMP synthase [Nucleoti 99.5 8.5E-14 1.8E-18 127.2 7.7 83 2-89 18-106 (552)
92 cd01746 GATase1_CTP_Synthase T 99.4 1.7E-12 3.6E-17 112.5 13.7 84 2-90 2-103 (235)
93 KOG0370 Multifunctional pyrimi 99.4 5.4E-12 1.2E-16 123.6 17.0 80 2-88 174-257 (1435)
94 KOG3179 Predicted glutamine sy 99.4 1.7E-12 3.6E-17 107.9 9.5 86 2-90 6-112 (245)
95 PRK05368 homoserine O-succinyl 99.4 3.3E-11 7.3E-16 107.6 16.8 136 36-208 98-252 (302)
96 COG3442 Predicted glutamine am 99.3 3.3E-11 7.2E-16 101.4 12.5 99 9-107 20-123 (250)
97 KOG1224 Para-aminobenzoate (PA 99.3 5.5E-11 1.2E-15 110.9 14.7 171 2-211 16-221 (767)
98 COG1492 CobQ Cobyric acid synt 99.3 1.1E-10 2.4E-15 109.1 16.6 106 2-109 253-368 (486)
99 TIGR01857 FGAM-synthase phosph 99.3 5.3E-11 1.2E-15 122.4 14.6 87 1-87 978-1090(1239)
100 PF09825 BPL_N: Biotin-protein 99.2 3.3E-10 7.2E-15 103.6 16.0 192 1-195 1-218 (367)
101 KOG2387 CTP synthase (UTP-ammo 99.2 5.9E-11 1.3E-15 108.7 8.7 82 2-88 300-409 (585)
102 cd03146 GAT1_Peptidase_E Type 99.1 3.3E-10 7.2E-15 96.7 9.2 107 2-109 33-158 (212)
103 PLN03206 phosphoribosylformylg 99.1 8.6E-10 1.9E-14 114.3 12.3 87 1-87 1038-1142(1307)
104 TIGR01735 FGAM_synt phosphorib 99.1 9.2E-10 2E-14 114.6 11.8 87 1-87 1056-1160(1310)
105 PRK05297 phosphoribosylformylg 99.0 4.7E-09 1E-13 109.6 12.3 87 1-87 1036-1140(1290)
106 KOG1559 Gamma-glutamyl hydrola 98.9 1.3E-08 2.8E-13 87.2 9.5 85 3-89 55-165 (340)
107 PHA03366 FGAM-synthase; Provis 98.8 2.7E-08 5.8E-13 103.9 12.8 87 1-87 1029-1133(1304)
108 cd03144 GATase1_ScBLP_like Typ 98.8 1.6E-08 3.4E-13 78.0 7.3 80 2-84 1-90 (114)
109 PRK05282 (alpha)-aspartyl dipe 98.7 1.7E-07 3.6E-12 81.2 11.2 107 2-109 33-157 (233)
110 TIGR01382 PfpI intracellular p 98.7 1.3E-07 2.7E-12 77.1 9.0 84 2-87 1-108 (166)
111 TIGR01739 tegu_FGAM_synt herpe 98.7 1.7E-07 3.7E-12 97.5 12.0 86 2-87 931-1034(1202)
112 PRK11780 isoprenoid biosynthes 98.6 2.2E-07 4.8E-12 79.7 9.5 88 1-88 2-145 (217)
113 cd03134 GATase1_PfpI_like A ty 98.6 2.4E-07 5.2E-12 75.3 8.5 84 2-87 1-110 (165)
114 cd03169 GATase1_PfpI_1 Type 1 98.6 4.3E-07 9.2E-12 75.2 9.2 84 2-87 1-124 (180)
115 cd03132 GATase1_catalase Type 98.5 8.2E-07 1.8E-11 70.6 9.9 86 1-87 2-111 (142)
116 cd01653 GATase1 Type 1 glutami 98.5 6.7E-07 1.5E-11 65.3 8.2 81 3-84 1-92 (115)
117 COG4285 Uncharacterized conser 98.4 3.6E-06 7.7E-11 71.1 11.5 184 1-196 1-209 (253)
118 cd03135 GATase1_DJ-1 Type 1 gl 98.4 1.9E-06 4.1E-11 69.6 9.3 84 3-87 1-109 (163)
119 COG0693 ThiJ Putative intracel 98.4 2.1E-06 4.5E-11 71.5 9.1 85 1-87 3-115 (188)
120 cd03128 GAT_1 Type 1 glutamine 98.3 1.6E-06 3.5E-11 60.5 6.4 80 4-84 2-92 (92)
121 TIGR01383 not_thiJ DJ-1 family 98.3 3.5E-06 7.6E-11 69.3 9.1 85 2-87 1-112 (179)
122 cd03129 GAT1_Peptidase_E_like 98.2 1.1E-05 2.3E-10 68.6 10.6 107 2-109 31-159 (210)
123 cd03137 GATase1_AraC_1 AraC tr 98.2 4.3E-06 9.2E-11 69.3 7.3 83 3-87 1-112 (187)
124 PRK11574 oxidative-stress-resi 98.2 1.3E-05 2.8E-10 67.2 10.1 85 1-86 3-114 (196)
125 cd03138 GATase1_AraC_2 AraC tr 98.1 1.4E-05 3.1E-10 66.7 9.1 53 35-87 67-120 (195)
126 cd03133 GATase1_ES1 Type 1 glu 98.1 1.1E-05 2.3E-10 69.1 8.3 77 12-88 19-142 (213)
127 cd03140 GATase1_PfpI_3 Type 1 98.1 5.8E-06 1.3E-10 67.8 6.4 82 3-87 1-107 (170)
128 cd03147 GATase1_Ydr533c_like T 98.1 9E-06 2E-10 70.4 7.7 74 13-87 28-143 (231)
129 cd03139 GATase1_PfpI_2 Type 1 98.1 7.5E-06 1.6E-10 67.5 6.8 83 3-87 1-110 (183)
130 PRK11249 katE hydroperoxidase 98.1 2.3E-05 4.9E-10 77.8 9.9 86 1-87 598-707 (752)
131 cd03136 GATase1_AraC_ArgR_like 98.0 1.8E-05 3.9E-10 65.6 7.2 50 35-87 62-111 (185)
132 PRK04155 chaperone protein Hch 98.0 3.5E-05 7.6E-10 68.8 9.5 51 36-87 146-196 (287)
133 cd03148 GATase1_EcHsp31_like T 98.0 3E-05 6.5E-10 67.2 7.9 51 36-87 95-145 (232)
134 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.6 3.4E-05 7.4E-10 61.8 2.9 52 35-87 35-87 (147)
135 PF04204 HTS: Homoserine O-suc 97.6 0.00044 9.5E-09 61.8 9.9 171 1-208 35-251 (298)
136 cd03141 GATase1_Hsp31_like Typ 97.6 0.00014 3E-09 62.5 6.3 51 36-87 89-139 (221)
137 PF03575 Peptidase_S51: Peptid 97.6 0.00021 4.6E-09 57.7 7.0 95 14-109 4-113 (154)
138 PRK09393 ftrA transcriptional 97.5 0.00034 7.3E-09 63.1 8.0 83 2-87 11-122 (322)
139 PF13278 DUF4066: Putative ami 97.5 0.0001 2.3E-09 59.9 3.8 52 34-87 58-109 (166)
140 cd03131 GATase1_HTS Type 1 glu 97.4 0.00011 2.3E-09 61.0 3.1 52 35-89 60-116 (175)
141 KOG2764 Putative transcription 97.2 0.0016 3.5E-08 55.8 7.6 66 15-81 24-110 (247)
142 TIGR01001 metA homoserine O-su 97.1 0.0037 8.1E-08 55.7 9.3 85 1-88 36-152 (300)
143 cd03145 GAT1_cyanophycinase Ty 97.0 0.0046 1E-07 52.9 9.0 86 2-88 31-134 (217)
144 TIGR02069 cyanophycinase cyano 96.9 0.0049 1.1E-07 54.0 8.4 105 2-107 30-162 (250)
145 PF03698 UPF0180: Uncharacteri 96.7 0.0051 1.1E-07 44.4 5.5 42 2-46 3-44 (80)
146 COG3340 PepE Peptidase E [Amin 96.5 0.0064 1.4E-07 51.8 6.0 75 14-89 53-136 (224)
147 PRK03094 hypothetical protein; 96.4 0.01 2.3E-07 42.7 5.5 41 2-45 3-43 (80)
148 KOG1907 Phosphoribosylformylgl 95.6 0.025 5.5E-07 56.9 6.1 86 2-87 1060-1163(1320)
149 COG4977 Transcriptional regula 95.3 0.027 5.8E-07 51.2 4.9 50 35-87 74-124 (328)
150 PRK01911 ppnK inorganic polyph 94.7 0.18 4E-06 45.1 8.6 71 1-81 1-98 (292)
151 COG3155 ElbB Uncharacterized p 94.3 0.32 6.9E-06 39.8 8.2 54 36-89 84-146 (217)
152 PRK03708 ppnK inorganic polyph 94.3 0.26 5.6E-06 43.9 8.4 70 1-81 1-90 (277)
153 PRK02649 ppnK inorganic polyph 92.8 0.53 1.2E-05 42.5 8.0 70 1-80 2-101 (305)
154 PF06283 ThuA: Trehalose utili 92.0 0.47 1E-05 40.2 6.2 63 14-81 23-91 (217)
155 COG4635 HemG Flavodoxin [Energ 91.2 1.3 2.8E-05 36.3 7.5 78 1-82 1-90 (175)
156 PRK14077 pnk inorganic polypho 91.0 1.3 2.9E-05 39.6 8.3 70 2-81 12-98 (287)
157 PRK11104 hemG protoporphyrinog 90.8 1.2 2.6E-05 36.8 7.4 74 1-80 1-87 (177)
158 PRK04539 ppnK inorganic polyph 90.7 1.9 4.1E-05 38.8 9.0 70 2-81 7-102 (296)
159 cd03143 A4_beta-galactosidase_ 90.6 1.5 3.3E-05 34.8 7.6 58 12-76 28-85 (154)
160 PRK04885 ppnK inorganic polyph 90.5 1.3 2.8E-05 39.2 7.7 63 1-81 1-71 (265)
161 PRK03378 ppnK inorganic polyph 90.4 1.8 3.9E-05 38.8 8.7 70 2-81 7-97 (292)
162 PRK03372 ppnK inorganic polyph 90.2 1.8 3.9E-05 39.1 8.5 70 2-81 7-106 (306)
163 PRK02155 ppnK NAD(+)/NADH kina 90.0 1.8 3.9E-05 38.7 8.3 70 2-81 7-97 (291)
164 PF08532 Glyco_hydro_42M: Beta 89.4 1.2 2.6E-05 37.6 6.4 59 13-78 33-91 (207)
165 PRK14075 pnk inorganic polypho 89.4 2.1 4.6E-05 37.6 8.2 68 1-81 1-72 (256)
166 PRK14076 pnk inorganic polypho 89.3 1.9 4E-05 42.3 8.5 71 1-81 291-382 (569)
167 PRK02645 ppnK inorganic polyph 88.8 2.9 6.3E-05 37.6 8.8 68 2-79 5-89 (305)
168 COG2910 Putative NADH-flavin r 88.1 4.8 0.0001 34.0 8.9 79 1-82 1-107 (211)
169 COG4090 Uncharacterized protei 84.8 0.86 1.9E-05 35.9 2.7 42 33-79 81-124 (154)
170 COG4242 CphB Cyanophycinase an 84.7 0.69 1.5E-05 40.5 2.3 93 15-108 72-187 (293)
171 PRK01185 ppnK inorganic polyph 84.6 7.4 0.00016 34.5 8.9 65 1-80 1-82 (271)
172 PRK09271 flavodoxin; Provision 84.5 8.4 0.00018 31.0 8.6 74 1-80 1-94 (160)
173 COG0771 MurD UDP-N-acetylmuram 84.1 5.5 0.00012 37.9 8.3 30 1-30 8-37 (448)
174 PRK01231 ppnK inorganic polyph 83.7 5.9 0.00013 35.5 8.0 70 2-81 6-96 (295)
175 PF00056 Ldh_1_N: lactate/mala 82.8 4.5 9.8E-05 32.0 6.2 47 1-47 1-79 (141)
176 PRK00561 ppnK inorganic polyph 81.3 6.5 0.00014 34.7 7.1 62 1-81 1-67 (259)
177 PF09198 T4-Gluco-transf: Bact 80.5 3 6.4E-05 24.9 3.2 26 1-26 1-37 (38)
178 PRK06756 flavodoxin; Provision 79.5 8.6 0.00019 30.2 6.8 44 1-44 2-56 (148)
179 PLN02929 NADH kinase 79.1 7.3 0.00016 35.2 6.8 57 13-80 37-96 (301)
180 TIGR02667 moaB_proteo molybden 79.1 15 0.00032 29.9 8.2 46 2-47 6-73 (163)
181 TIGR00177 molyb_syn molybdenum 78.7 5.7 0.00012 31.5 5.5 34 14-47 31-76 (144)
182 PF09822 ABC_transp_aux: ABC-t 78.3 10 0.00022 33.1 7.5 67 2-75 148-229 (271)
183 PRK03767 NAD(P)H:quinone oxido 78.2 5.7 0.00012 33.2 5.7 45 1-45 2-77 (200)
184 PRK06703 flavodoxin; Provision 78.1 8.7 0.00019 30.3 6.5 43 1-43 2-54 (151)
185 cd05014 SIS_Kpsf KpsF-like pro 77.2 21 0.00046 26.9 8.2 70 2-80 2-83 (128)
186 PF02601 Exonuc_VII_L: Exonucl 75.8 12 0.00027 33.5 7.5 70 2-75 16-111 (319)
187 PRK03501 ppnK inorganic polyph 75.6 14 0.0003 32.6 7.6 64 2-80 4-74 (264)
188 PF10087 DUF2325: Uncharacteri 75.6 19 0.00042 26.3 7.3 77 3-88 2-93 (97)
189 PRK00421 murC UDP-N-acetylmura 74.6 17 0.00037 34.3 8.5 78 1-80 8-115 (461)
190 PF01220 DHquinase_II: Dehydro 74.4 11 0.00024 30.1 6.0 48 1-48 1-78 (140)
191 PF10727 Rossmann-like: Rossma 74.4 6.1 0.00013 30.9 4.5 44 1-45 11-76 (127)
192 TIGR01755 flav_wrbA NAD(P)H:qu 73.7 9.1 0.0002 32.0 5.7 45 1-45 1-76 (197)
193 COG1897 MetA Homoserine trans- 73.3 11 0.00023 33.4 6.0 84 2-88 37-152 (307)
194 TIGR00200 cinA_nterm competenc 73.2 8.7 0.00019 36.2 6.0 46 1-46 1-68 (413)
195 PRK03673 hypothetical protein; 73.1 9.5 0.00021 35.8 6.1 46 1-46 2-69 (396)
196 PRK06444 prephenate dehydrogen 72.6 9 0.0002 32.3 5.4 37 1-44 1-38 (197)
197 PRK02231 ppnK inorganic polyph 71.8 14 0.0003 32.8 6.6 58 13-80 3-75 (272)
198 COG1058 CinA Predicted nucleot 71.6 16 0.00035 32.1 6.9 46 1-46 2-69 (255)
199 TIGR01754 flav_RNR ribonucleot 71.1 22 0.00049 27.7 7.1 45 1-45 1-58 (140)
200 PRK13015 3-dehydroquinate dehy 70.3 25 0.00054 28.3 7.1 48 1-48 2-79 (146)
201 PRK00549 competence damage-ind 69.3 12 0.00026 35.2 6.0 46 1-46 1-68 (414)
202 PF13689 DUF4154: Domain of un 69.2 27 0.00058 27.6 7.2 70 1-82 28-102 (145)
203 cd00885 cinA Competence-damage 69.1 16 0.00036 29.9 6.1 69 12-88 21-102 (170)
204 PRK06242 flavodoxin; Provision 68.9 20 0.00044 27.9 6.5 45 1-45 1-51 (150)
205 cd00758 MoCF_BD MoCF_BD: molyb 67.7 15 0.00032 28.5 5.4 36 12-47 21-68 (133)
206 TIGR02990 ectoine_eutA ectoine 67.3 26 0.00056 30.4 7.3 66 2-77 122-212 (239)
207 TIGR00147 lipid kinase, YegS/R 67.3 37 0.0008 29.8 8.5 50 1-50 2-70 (293)
208 PRK05395 3-dehydroquinate dehy 66.9 39 0.00085 27.2 7.5 48 1-48 2-79 (146)
209 COG0303 MoeA Molybdopterin bio 66.8 30 0.00065 32.5 8.0 35 14-48 207-253 (404)
210 PLN02935 Bifunctional NADH kin 66.8 27 0.00058 33.8 7.7 69 2-80 196-295 (508)
211 PRK01215 competence damage-ind 65.7 25 0.00054 31.0 6.9 46 2-47 5-72 (264)
212 PRK10446 ribosomal protein S6 65.6 14 0.00029 32.9 5.3 31 1-31 1-34 (300)
213 PRK03815 murD UDP-N-acetylmura 65.4 34 0.00075 31.9 8.2 29 1-30 1-29 (401)
214 PRK03670 competence damage-ind 65.3 18 0.00039 31.7 5.9 46 1-46 1-69 (252)
215 PF01513 NAD_kinase: ATP-NAD k 64.6 12 0.00026 33.1 4.8 70 2-81 1-110 (285)
216 cd00886 MogA_MoaB MogA_MoaB fa 63.7 19 0.00042 28.7 5.4 36 12-47 22-71 (152)
217 cd03142 GATase1_ThuA Type 1 gl 63.5 22 0.00047 30.5 5.9 62 14-81 27-98 (215)
218 PRK14571 D-alanyl-alanine synt 63.2 19 0.00041 31.8 5.8 42 1-43 1-59 (299)
219 PF00919 UPF0004: Uncharacteri 61.0 65 0.0014 23.8 7.7 42 2-48 1-48 (98)
220 TIGR00237 xseA exodeoxyribonuc 60.7 43 0.00093 31.7 8.0 70 2-75 131-223 (432)
221 PRK05569 flavodoxin; Provision 60.1 19 0.00041 27.9 4.7 44 2-45 3-56 (141)
222 PLN02727 NAD kinase 59.8 31 0.00068 35.8 7.1 70 2-81 680-777 (986)
223 COG1570 XseA Exonuclease VII, 57.7 48 0.001 31.6 7.5 70 2-75 137-229 (440)
224 PRK11914 diacylglycerol kinase 56.9 60 0.0013 28.8 7.9 50 1-50 9-77 (306)
225 PRK00286 xseA exodeoxyribonucl 56.9 53 0.0011 30.9 7.9 70 2-75 137-228 (438)
226 PRK04690 murD UDP-N-acetylmura 56.8 46 0.001 31.6 7.6 29 2-30 10-38 (468)
227 PRK09417 mogA molybdenum cofac 56.5 36 0.00077 28.6 6.0 47 1-47 4-76 (193)
228 PF12641 Flavodoxin_3: Flavodo 55.9 42 0.00091 27.3 6.1 67 8-80 7-78 (160)
229 PRK09267 flavodoxin FldA; Vali 55.8 38 0.00083 27.1 6.0 45 1-45 2-54 (169)
230 PRK10949 protease 4; Provision 55.0 40 0.00087 33.5 6.9 47 36-88 363-418 (618)
231 PRK12359 flavodoxin FldB; Prov 54.9 33 0.00071 28.2 5.4 44 1-44 1-52 (172)
232 COG0061 nadF NAD kinase [Coenz 54.5 62 0.0013 28.7 7.5 70 1-80 1-88 (281)
233 PRK01390 murD UDP-N-acetylmura 54.4 70 0.0015 30.1 8.3 29 2-30 11-39 (460)
234 TIGR01082 murC UDP-N-acetylmur 54.3 42 0.00091 31.5 6.8 77 3-80 2-107 (448)
235 PRK01710 murD UDP-N-acetylmura 53.5 47 0.001 31.4 7.0 29 2-30 16-44 (458)
236 KOG1467 Translation initiation 53.4 25 0.00055 33.8 5.0 80 1-84 386-474 (556)
237 TIGR03521 GldG gliding-associa 53.4 54 0.0012 32.0 7.5 69 2-77 185-268 (552)
238 TIGR02853 spore_dpaA dipicolin 52.9 38 0.00083 30.1 5.9 43 1-45 2-62 (287)
239 PRK05568 flavodoxin; Provision 52.5 33 0.00071 26.5 4.9 44 2-45 3-56 (142)
240 PRK04761 ppnK inorganic polyph 51.9 19 0.00042 31.4 3.8 38 34-81 22-59 (246)
241 PRK14690 molybdopterin biosynt 51.9 37 0.00079 32.1 5.9 35 14-48 224-270 (419)
242 PRK14619 NAD(P)H-dependent gly 51.6 31 0.00068 30.7 5.2 44 1-45 5-55 (308)
243 TIGR01819 F420_cofD LPPG:FO 2- 51.5 15 0.00033 33.0 3.1 38 35-78 180-219 (297)
244 COG0616 SppA Periplasmic serin 51.2 52 0.0011 29.8 6.6 37 44-87 108-149 (317)
245 COG5426 Uncharacterized membra 51.0 26 0.00056 29.7 4.2 65 14-78 36-117 (254)
246 cd06305 PBP1_methylthioribose_ 50.6 1.3E+02 0.0028 25.2 8.8 33 14-46 20-64 (273)
247 PRK06975 bifunctional uroporph 50.1 60 0.0013 32.5 7.4 72 1-82 4-92 (656)
248 PRK07116 flavodoxin; Provision 49.6 38 0.00082 27.1 5.0 26 1-26 3-31 (160)
249 cd06318 PBP1_ABC_sugar_binding 49.4 97 0.0021 26.2 7.9 33 14-46 20-64 (282)
250 PRK03369 murD UDP-N-acetylmura 49.3 60 0.0013 31.0 7.1 29 2-30 14-42 (488)
251 PRK09189 uroporphyrinogen-III 49.1 48 0.001 28.2 5.8 45 1-45 1-56 (240)
252 PRK04308 murD UDP-N-acetylmura 48.3 80 0.0017 29.6 7.6 79 2-80 7-118 (445)
253 PRK00141 murD UDP-N-acetylmura 47.1 67 0.0015 30.5 7.0 29 2-30 17-45 (473)
254 COG0299 PurN Folate-dependent 46.2 1.6E+02 0.0035 25.0 8.2 78 1-85 1-92 (200)
255 PF09897 DUF2124: Uncharacteri 45.9 2.8 6.1E-05 33.7 -2.2 39 38-79 81-119 (147)
256 COG2185 Sbm Methylmalonyl-CoA 45.4 60 0.0013 26.0 5.3 32 14-45 31-71 (143)
257 cd06300 PBP1_ABC_sugar_binding 45.3 1.6E+02 0.0034 24.8 8.5 45 2-46 1-69 (272)
258 cd00887 MoeA MoeA family. Memb 45.2 49 0.0011 30.8 5.6 35 14-48 199-245 (394)
259 PF01975 SurE: Survival protei 45.2 22 0.00048 29.9 3.0 32 1-32 1-36 (196)
260 KOG4180 Predicted kinase [Gene 44.8 33 0.00071 31.4 4.1 54 14-77 79-135 (395)
261 PRK01368 murD UDP-N-acetylmura 44.6 85 0.0018 29.8 7.2 28 2-30 8-35 (454)
262 PRK05928 hemD uroporphyrinogen 44.0 42 0.0009 28.2 4.6 46 1-46 2-61 (249)
263 PF04007 DUF354: Protein of un 43.8 1.4E+02 0.003 27.3 8.2 86 1-87 1-98 (335)
264 PRK10333 5-formyltetrahydrofol 43.7 11 0.00023 31.2 0.9 49 37-85 109-159 (182)
265 TIGR00706 SppA_dom signal pept 42.9 65 0.0014 27.0 5.6 62 2-80 1-70 (207)
266 PF07090 DUF1355: Protein of u 42.8 49 0.0011 27.4 4.6 69 11-82 28-111 (177)
267 KOG2452 Formyltetrahydrofolate 42.7 72 0.0016 30.8 6.1 42 1-43 1-44 (881)
268 PF01210 NAD_Gly3P_dh_N: NAD-d 42.3 41 0.00088 26.8 4.1 72 2-81 1-106 (157)
269 COG1184 GCD2 Translation initi 41.1 60 0.0013 29.3 5.2 71 11-82 158-232 (301)
270 cd07388 MPP_Tt1561 Thermus the 40.6 1.5E+02 0.0033 25.3 7.6 35 1-46 5-40 (224)
271 cd06316 PBP1_ABC_sugar_binding 39.5 2.2E+02 0.0048 24.4 8.6 67 2-77 1-87 (294)
272 TIGR02336 1,3-beta-galactosyl- 39.5 72 0.0016 32.1 5.9 61 17-79 475-544 (719)
273 PRK10680 molybdopterin biosynt 39.4 60 0.0013 30.5 5.2 35 14-48 208-254 (411)
274 TIGR02727 MTHFS_bact 5,10-meth 39.3 16 0.00035 30.0 1.3 49 37-86 115-165 (181)
275 PRK10816 DNA-binding transcrip 39.0 49 0.0011 26.9 4.2 44 1-44 1-51 (223)
276 COG0391 Uncharacterized conser 38.9 28 0.00061 31.7 2.8 41 35-79 187-229 (323)
277 cd06267 PBP1_LacI_sugar_bindin 38.7 2.2E+02 0.0047 23.3 8.2 64 3-77 2-84 (264)
278 PF13241 NAD_binding_7: Putati 37.9 1.3E+02 0.0029 22.0 6.0 47 2-49 9-72 (103)
279 cd06309 PBP1_YtfQ_like Peripla 37.8 1.6E+02 0.0034 24.8 7.3 33 14-46 20-64 (273)
280 PRK11778 putative inner membra 37.7 1.2E+02 0.0025 27.9 6.6 44 39-88 124-176 (330)
281 PRK00683 murD UDP-N-acetylmura 37.4 1.6E+02 0.0034 27.4 7.7 29 2-30 5-33 (418)
282 cd06319 PBP1_ABC_sugar_binding 37.1 2.5E+02 0.0054 23.5 8.9 33 14-46 20-64 (277)
283 COG0521 MoaB Molybdopterin bio 37.0 78 0.0017 26.1 4.9 67 2-73 9-98 (169)
284 cd06320 PBP1_allose_binding Pe 36.9 2.5E+02 0.0055 23.5 8.8 67 2-77 1-88 (275)
285 PLN02688 pyrroline-5-carboxyla 36.8 1.2E+02 0.0027 26.0 6.6 74 1-82 1-99 (266)
286 TIGR00114 lumazine-synth 6,7-d 36.7 2E+02 0.0042 22.9 7.0 74 1-75 1-100 (138)
287 smart00852 MoCF_biosynth Proba 36.7 66 0.0014 24.8 4.3 36 12-47 20-67 (135)
288 cd06312 PBP1_ABC_sugar_binding 36.4 2.6E+02 0.0056 23.5 8.6 68 2-78 1-89 (271)
289 PRK10017 colanic acid biosynth 36.4 1.5E+02 0.0032 28.0 7.4 30 1-30 1-40 (426)
290 cd05005 SIS_PHI Hexulose-6-pho 36.1 2.3E+02 0.005 22.8 9.5 69 2-79 35-110 (179)
291 PRK01372 ddl D-alanine--D-alan 36.1 71 0.0015 28.0 5.0 41 2-43 6-62 (304)
292 TIGR03127 RuMP_HxlB 6-phospho 36.0 2.3E+02 0.0049 22.7 8.9 76 2-86 32-115 (179)
293 PRK00066 ldh L-lactate dehydro 35.7 1.4E+02 0.0031 26.8 7.0 46 1-47 7-83 (315)
294 TIGR00288 conserved hypothetic 35.6 66 0.0014 26.3 4.3 29 3-31 109-137 (160)
295 PRK08622 galactose-6-phosphate 35.5 1.2E+02 0.0025 25.1 5.7 31 1-31 1-34 (171)
296 cd06310 PBP1_ABC_sugar_binding 35.3 2.7E+02 0.0058 23.3 9.0 45 2-46 1-66 (273)
297 PRK08811 uroporphyrinogen-III 35.3 59 0.0013 28.5 4.3 79 1-87 19-111 (266)
298 PRK00166 apaH diadenosine tetr 35.1 73 0.0016 28.2 4.8 35 1-45 1-36 (275)
299 PF00885 DMRL_synthase: 6,7-di 34.8 1.7E+02 0.0036 23.4 6.4 45 1-45 4-70 (144)
300 PRK09273 hypothetical protein; 34.8 55 0.0012 28.0 3.8 30 1-30 1-37 (211)
301 PRK00048 dihydrodipicolinate r 34.5 3E+02 0.0065 23.8 8.6 28 1-28 2-31 (257)
302 PF12850 Metallophos_2: Calcin 34.5 53 0.0012 25.2 3.5 33 1-46 1-34 (156)
303 cd07186 CofD_like LPPG:FO 2-ph 34.4 44 0.00095 30.2 3.3 39 35-78 181-222 (303)
304 PRK14491 putative bifunctional 34.2 69 0.0015 31.7 5.0 35 14-48 398-444 (597)
305 COG0745 OmpR Response regulato 33.9 87 0.0019 26.8 5.0 74 1-80 1-81 (229)
306 PRK10569 NAD(P)H-dependent FMN 33.8 2E+02 0.0044 23.8 7.1 29 1-29 1-37 (191)
307 TIGR01087 murD UDP-N-acetylmur 33.7 1.8E+02 0.0038 27.0 7.5 77 2-81 1-111 (433)
308 TIGR01125 MiaB-like tRNA modif 33.4 1.5E+02 0.0033 27.8 6.9 77 2-88 1-83 (430)
309 PRK13606 LPPG:FO 2-phospho-L-l 32.7 37 0.00079 30.7 2.5 38 35-78 183-222 (303)
310 PRK13055 putative lipid kinase 32.6 2.7E+02 0.0058 25.1 8.2 48 2-49 4-71 (334)
311 PRK05752 uroporphyrinogen-III 32.6 63 0.0014 27.8 4.0 44 2-45 5-63 (255)
312 PF01113 DapB_N: Dihydrodipico 32.5 1.2E+02 0.0027 23.0 5.2 28 1-28 1-30 (124)
313 cd03522 MoeA_like MoeA_like. T 32.3 1.2E+02 0.0026 27.4 5.8 48 1-48 160-230 (312)
314 PRK12615 galactose-6-phosphate 32.2 1.4E+02 0.0029 24.8 5.6 31 1-31 1-34 (171)
315 PRK13054 lipid kinase; Reviewe 32.2 2E+02 0.0042 25.4 7.2 48 2-49 5-68 (300)
316 PF13407 Peripla_BP_4: Peripla 32.1 2.7E+02 0.0057 23.1 7.8 58 14-80 19-89 (257)
317 COG0655 WrbA Multimeric flavod 32.0 93 0.002 25.9 4.8 30 1-30 1-38 (207)
318 PF11823 DUF3343: Protein of u 31.8 1.5E+02 0.0033 20.3 5.1 37 1-37 1-39 (73)
319 TIGR00768 rimK_fam alpha-L-glu 31.7 91 0.002 26.6 4.9 43 2-44 1-55 (277)
320 cd06284 PBP1_LacI_like_6 Ligan 31.5 3E+02 0.0065 22.7 8.6 33 14-46 20-64 (267)
321 cd01337 MDH_glyoxysomal_mitoch 31.3 2.4E+02 0.0051 25.5 7.6 47 1-47 1-78 (310)
322 PRK10336 DNA-binding transcrip 31.3 1E+02 0.0022 24.7 4.8 45 1-45 1-52 (219)
323 COG3395 Uncharacterized protei 31.2 1.8E+02 0.0038 27.6 6.8 45 1-45 1-49 (413)
324 PRK00726 murG undecaprenyldiph 31.2 1.5E+02 0.0033 26.4 6.4 56 9-79 221-280 (357)
325 TIGR01119 lacB galactose-6-pho 31.1 1.6E+02 0.0034 24.4 5.8 31 1-31 1-34 (171)
326 PRK09004 FMN-binding protein M 31.0 1.2E+02 0.0027 23.8 5.2 43 1-43 2-52 (146)
327 PRK02006 murD UDP-N-acetylmura 31.0 2E+02 0.0044 27.4 7.5 29 2-30 9-37 (498)
328 PRK06851 hypothetical protein; 30.4 1.4E+02 0.0031 27.7 6.0 44 2-45 31-80 (367)
329 COG1587 HemD Uroporphyrinogen- 30.3 93 0.002 26.7 4.7 80 1-87 2-95 (248)
330 PRK07308 flavodoxin; Validated 30.3 1.9E+02 0.004 22.4 6.1 42 2-43 3-54 (146)
331 TIGR00465 ilvC ketol-acid redu 30.1 2E+02 0.0044 25.9 6.9 75 1-83 4-98 (314)
332 PRK14573 bifunctional D-alanyl 30.1 2.2E+02 0.0047 29.2 7.9 77 2-80 6-112 (809)
333 PRK14862 rimO ribosomal protei 29.8 2.4E+02 0.0052 26.6 7.7 39 1-44 8-51 (440)
334 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.8 2.3E+02 0.005 20.9 7.5 70 2-80 1-82 (126)
335 PRK10481 hypothetical protein; 29.5 2.6E+02 0.0055 24.1 7.1 66 2-78 131-213 (224)
336 PRK12419 riboflavin synthase s 29.3 2.7E+02 0.0058 22.7 6.8 74 1-75 11-110 (158)
337 PRK14497 putative molybdopteri 29.1 1.1E+02 0.0024 30.0 5.3 34 14-47 210-255 (546)
338 PRK11557 putative DNA-binding 28.9 3.8E+02 0.0082 23.1 8.5 70 2-80 130-211 (278)
339 TIGR01826 CofD_related conserv 28.5 56 0.0012 29.6 3.0 42 35-81 170-214 (310)
340 PF09508 Lact_bio_phlase: Lact 28.5 88 0.0019 31.3 4.5 63 14-78 469-540 (716)
341 TIGR00705 SppA_67K signal pept 28.3 1.5E+02 0.0033 29.2 6.2 46 37-88 346-400 (584)
342 TIGR00393 kpsF KpsF/GutQ famil 28.3 3.4E+02 0.0074 23.1 7.9 70 2-80 2-83 (268)
343 smart00448 REC cheY-homologous 28.2 1.1E+02 0.0024 16.7 4.4 31 1-31 1-32 (55)
344 COG1597 LCB5 Sphingosine kinas 28.1 3.6E+02 0.0079 24.0 8.2 36 14-49 24-70 (301)
345 PRK14498 putative molybdopteri 27.9 1.2E+02 0.0025 30.1 5.4 34 14-47 217-262 (633)
346 PLN02522 ATP citrate (pro-S)-l 27.9 3.1E+02 0.0066 27.4 8.2 73 2-83 169-262 (608)
347 PF13380 CoA_binding_2: CoA bi 27.9 2.7E+02 0.0057 21.0 8.6 45 2-46 2-64 (116)
348 PRK02261 methylaspartate mutas 27.9 3E+02 0.0064 21.5 6.8 44 2-45 5-62 (137)
349 PF12724 Flavodoxin_5: Flavodo 27.9 1.2E+02 0.0027 23.5 4.6 38 9-46 8-52 (143)
350 PRK15029 arginine decarboxylas 27.7 1.3E+02 0.0028 30.8 5.7 43 1-43 1-59 (755)
351 PF01812 5-FTHF_cyc-lig: 5-for 27.4 14 0.00031 30.3 -1.0 49 37-85 117-169 (186)
352 PRK11337 DNA-binding transcrip 27.3 3.9E+02 0.0085 23.2 8.2 69 2-79 142-222 (292)
353 PRK03806 murD UDP-N-acetylmura 27.3 2.4E+02 0.0051 26.3 7.1 29 2-30 8-36 (438)
354 PRK06851 hypothetical protein; 27.2 1.9E+02 0.004 26.9 6.2 32 14-45 233-264 (367)
355 PF14403 CP_ATPgrasp_2: Circul 26.9 2E+02 0.0043 27.5 6.5 45 2-47 187-236 (445)
356 cd07044 CofD_YvcK Family of Co 26.8 68 0.0015 29.1 3.2 42 35-81 172-216 (309)
357 PRK09836 DNA-binding transcrip 26.8 1.3E+02 0.0029 24.4 4.9 44 1-44 1-51 (227)
358 cd01539 PBP1_GGBP Periplasmic 26.7 4.2E+02 0.0091 22.9 8.8 67 2-77 1-88 (303)
359 cd06282 PBP1_GntR_like_2 Ligan 26.5 2.9E+02 0.0064 22.7 7.1 33 14-46 20-64 (266)
360 PF04016 DUF364: Domain of unk 26.5 49 0.0011 26.4 2.0 76 2-88 13-105 (147)
361 cd07423 MPP_PrpE Bacillus subt 26.4 71 0.0015 27.2 3.2 43 1-45 1-45 (234)
362 PRK14334 (dimethylallyl)adenos 26.3 3.5E+02 0.0075 25.5 8.1 42 1-47 1-48 (440)
363 KOG3093 5-formyltetrahydrofola 26.3 51 0.0011 27.7 2.1 49 37-85 128-182 (200)
364 COG2984 ABC-type uncharacteriz 26.2 4.3E+02 0.0094 24.1 8.2 68 2-76 161-244 (322)
365 PRK10342 glycerate kinase I; P 26.1 59 0.0013 30.4 2.8 43 33-81 280-326 (381)
366 PRK06455 riboflavin synthase; 26.0 3.6E+02 0.0078 21.9 7.4 45 1-45 2-64 (155)
367 cd06299 PBP1_LacI_like_13 Liga 25.9 2.9E+02 0.0063 22.9 6.9 33 14-46 20-64 (265)
368 PHA02239 putative protein phos 25.8 3.6E+02 0.0078 23.1 7.5 37 1-46 1-38 (235)
369 PRK13303 L-aspartate dehydroge 25.6 4.4E+02 0.0096 22.9 8.2 26 1-27 2-29 (265)
370 cd02071 MM_CoA_mut_B12_BD meth 25.6 3E+02 0.0064 20.8 7.3 52 2-53 1-66 (122)
371 PF03358 FMN_red: NADPH-depend 25.5 1E+02 0.0022 23.8 3.8 30 1-30 1-38 (152)
372 cd03109 DTBS Dethiobiotin synt 25.4 1.8E+02 0.004 22.3 5.2 53 14-75 18-72 (134)
373 PRK10643 DNA-binding transcrip 25.3 1.4E+02 0.0031 23.8 4.8 44 1-44 1-51 (222)
374 PLN02383 aspartate semialdehyd 25.3 2.9E+02 0.0064 25.2 7.2 24 1-24 8-32 (344)
375 PRK11517 transcriptional regul 25.3 1.6E+02 0.0034 23.7 5.0 44 1-44 1-51 (223)
376 PLN00060 meiotic recombination 25.2 1.5E+02 0.0033 27.7 5.3 45 36-88 233-284 (384)
377 PRK03803 murD UDP-N-acetylmura 24.9 2.5E+02 0.0054 26.3 6.8 28 3-30 9-36 (448)
378 cd02202 FtsZ_type2 FtsZ is a G 24.9 5.4E+02 0.012 23.5 9.7 23 1-23 1-23 (349)
379 COG0074 SucD Succinyl-CoA synt 24.9 5.1E+02 0.011 23.3 8.4 73 2-83 147-240 (293)
380 cd06292 PBP1_LacI_like_10 Liga 24.9 3E+02 0.0065 23.0 6.9 58 14-77 20-89 (273)
381 PRK07239 bifunctional uroporph 24.8 5.4E+02 0.012 23.5 9.1 82 2-86 13-113 (381)
382 TIGR00640 acid_CoA_mut_C methy 24.8 3E+02 0.0066 21.3 6.3 32 15-46 22-62 (132)
383 cd03784 GT1_Gtf_like This fami 24.7 1.1E+02 0.0024 27.7 4.4 32 1-32 1-37 (401)
384 cd01538 PBP1_ABC_xylose_bindin 24.7 4.3E+02 0.0093 22.5 7.9 55 14-77 20-86 (288)
385 PF00994 MoCF_biosynth: Probab 24.5 46 0.00099 26.0 1.5 34 14-47 21-66 (144)
386 PRK11199 tyrA bifunctional cho 24.5 1.7E+02 0.0038 26.9 5.6 45 1-45 99-150 (374)
387 cd06301 PBP1_rhizopine_binding 24.5 4.1E+02 0.009 22.1 8.5 45 2-46 1-65 (272)
388 cd02067 B12-binding B12 bindin 24.3 3E+02 0.0065 20.3 6.8 44 3-46 2-59 (119)
389 cd00287 ribokinase_pfkB_like r 24.0 3.6E+02 0.0078 21.2 7.2 57 9-79 36-92 (196)
390 cd05710 SIS_1 A subgroup of th 23.8 3.1E+02 0.0068 20.4 7.0 69 2-79 1-82 (120)
391 PRK13302 putative L-aspartate 23.6 5E+02 0.011 22.7 8.8 27 1-28 7-36 (271)
392 PRK14331 (dimethylallyl)adenos 23.5 2.7E+02 0.0058 26.2 6.8 42 1-47 1-48 (437)
393 cd07019 S49_SppA_1 Signal pept 23.4 3.5E+02 0.0077 22.5 6.9 20 62-81 61-80 (211)
394 cd01544 PBP1_GalR Ligand-bindi 23.2 4.5E+02 0.0097 22.0 8.1 32 14-45 25-60 (270)
395 cd07062 Peptidase_S66_mccF_lik 23.1 3.4E+02 0.0074 24.2 7.1 30 1-30 1-38 (308)
396 PRK09453 phosphodiesterase; Pr 22.9 1.5E+02 0.0033 23.9 4.5 34 1-45 1-35 (182)
397 PF10649 DUF2478: Protein of u 22.9 1.4E+02 0.0031 24.3 4.1 37 37-78 93-130 (159)
398 COG0621 MiaB 2-methylthioadeni 22.8 3.1E+02 0.0067 26.2 6.9 74 1-83 3-85 (437)
399 cd01575 PBP1_GntR Ligand-bindi 22.7 4.4E+02 0.0095 21.7 7.6 33 14-46 20-64 (268)
400 smart00870 Asparaginase Aspara 22.5 2.6E+02 0.0057 25.2 6.3 35 37-77 235-270 (323)
401 TIGR00284 dihydropteroate synt 22.4 1.8E+02 0.004 28.2 5.4 45 1-45 1-68 (499)
402 cd06273 PBP1_GntR_like_1 This 22.4 3.7E+02 0.0081 22.2 7.0 33 14-46 20-64 (268)
403 KOG1314 DHHC-type Zn-finger pr 22.2 60 0.0013 30.0 2.0 29 186-215 77-105 (414)
404 PF03437 BtpA: BtpA family; I 22.1 1.9E+02 0.0042 25.4 5.1 61 10-80 125-208 (254)
405 TIGR00087 surE 5'/3'-nucleotid 21.9 1.5E+02 0.0033 25.8 4.4 30 1-31 1-34 (244)
406 PRK08818 prephenate dehydrogen 21.9 2.3E+02 0.0051 26.3 5.9 45 1-45 5-59 (370)
407 cd05293 LDH_1 A subgroup of L- 21.7 4E+02 0.0088 23.9 7.3 13 34-46 68-80 (312)
408 cd07023 S49_Sppa_N_C Signal pe 21.6 2.6E+02 0.0057 23.2 5.7 21 61-81 56-76 (208)
409 PRK14330 (dimethylallyl)adenos 21.4 2.7E+02 0.0058 26.1 6.3 39 1-44 1-44 (434)
410 cd06302 PBP1_LsrB_Quorum_Sensi 21.3 5.3E+02 0.011 22.1 9.2 45 2-46 1-65 (298)
411 PF14359 DUF4406: Domain of un 21.3 2.8E+02 0.0062 20.2 5.1 36 11-46 17-68 (92)
412 COG1432 Uncharacterized conser 21.3 1.6E+02 0.0035 24.2 4.3 31 2-32 113-143 (181)
413 COG0698 RpiB Ribose 5-phosphat 21.2 1.4E+02 0.0031 24.1 3.8 29 1-29 1-32 (151)
414 COG0420 SbcD DNA repair exonuc 21.2 58 0.0013 30.0 1.8 42 36-80 39-84 (390)
415 PLN02812 5-formyltetrahydrofol 21.1 55 0.0012 27.6 1.4 49 37-85 131-188 (211)
416 PF09075 STb_secrete: Heat-sta 20.9 30 0.00066 21.4 -0.1 14 74-87 32-45 (48)
417 cd01080 NAD_bind_m-THF_DH_Cycl 20.9 2E+02 0.0044 23.4 4.8 45 2-47 46-97 (168)
418 PRK11543 gutQ D-arabinose 5-ph 20.9 5.6E+02 0.012 22.5 8.0 78 2-88 44-134 (321)
419 PRK11439 pphA serine/threonine 20.8 2.1E+02 0.0046 24.0 5.0 35 1-45 17-52 (218)
420 TIGR01753 flav_short flavodoxi 20.8 2.9E+02 0.0062 20.7 5.4 38 8-45 8-53 (140)
421 PF00072 Response_reg: Respons 20.8 1.7E+02 0.0037 20.6 4.0 70 3-78 1-78 (112)
422 cd00223 TOPRIM_TopoIIB_SPO TOP 20.8 2.6E+02 0.0056 22.3 5.3 45 37-88 23-72 (160)
423 cd04962 GT1_like_5 This family 20.7 1.2E+02 0.0027 26.6 3.7 31 1-31 1-37 (371)
424 cd03802 GT1_AviGT4_like This f 20.7 1.5E+02 0.0033 25.4 4.3 81 1-83 1-98 (335)
425 PF01936 NYN: NYN domain; Int 20.6 1.2E+02 0.0026 23.0 3.2 28 3-30 99-126 (146)
426 PRK13337 putative lipid kinase 20.5 4.3E+02 0.0093 23.3 7.2 48 2-49 3-69 (304)
427 PRK05584 5'-methylthioadenosin 20.5 1.4E+02 0.003 25.1 3.9 74 1-82 1-81 (230)
428 cd07424 MPP_PrpA_PrpB PrpA and 20.5 2E+02 0.0043 23.8 4.8 35 1-45 1-36 (207)
429 PRK12480 D-lactate dehydrogena 20.3 2.5E+02 0.0054 25.4 5.7 46 1-46 2-54 (330)
430 TIGR01118 lacA galactose-6-pho 20.2 1.8E+02 0.0038 23.3 4.1 31 1-31 1-34 (141)
431 PRK13932 stationary phase surv 20.1 1.8E+02 0.0039 25.6 4.5 30 1-31 6-39 (257)
432 TIGR00514 accC acetyl-CoA carb 20.1 3E+02 0.0066 25.8 6.4 41 2-43 4-50 (449)
433 cd07187 YvcK_like family of mo 20.1 1.2E+02 0.0026 27.5 3.4 42 35-81 173-217 (308)
434 PRK13304 L-aspartate dehydroge 20.1 5.8E+02 0.013 22.1 8.2 26 1-27 2-30 (265)
No 1
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=100.00 E-value=8.6e-46 Score=320.35 Aligned_cols=241 Identities=74% Similarity=1.176 Sum_probs=202.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+||+++|++.++.++|+++|++++++++++++.++|+||||||+++.+..|.+..++.+.|++++++|+|+||||+|
T Consensus 2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G 81 (248)
T PLN02832 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG 81 (248)
T ss_pred cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence 79999999999999999999999999999999999999999999999988888876557899999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~ 160 (247)
||+|++.+++...++.+++|.++.+|.||.+|+++.||...+++|++||+.+.+..++++|.+.|.+....+++||+|||
T Consensus 82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy 161 (248)
T PLN02832 82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY 161 (248)
T ss_pred HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence 99999998653223456799999999999999999999777899999999875445778888888876667889999999
Q ss_pred eCCCCC-----CCCCCCC-cEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhcccCccCCCCCccceeEEEcccccC
Q 025812 161 PVPSNK-----ENAMPEK-KVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGEGTSSGGKGTSSGIVVVGGENLG 234 (247)
Q Consensus 161 ~~~~~~-----~~~~~~~-~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (247)
..+... ++++|+. .++++++++|++|+|||||+|++.+|++||++++....+-.+++ -..|.-=..-.
T Consensus 162 ~~~~~~~~~~~a~~~y~~~~~~~aV~qgnvlatqFHPEls~d~rih~~Fl~~~~~~~~~~~~~------~~~~~~~~~~~ 235 (248)
T PLN02832 162 PLPSEKALYSSSTDAEGRDKVIVAVKQGNLLATAFHPELTADTRWHSYFVKMVSESEEYASSS------ELAVAKVDESS 235 (248)
T ss_pred cccccccccccccccccCCceEEEEEeCCEEEEEccCccCCccHHHHHHHHHHHHhhhccccc------ccccccccccc
Confidence 865432 3566765 78999999999999999999999999999999998766665554 22222222334
Q ss_pred CCCCCcCCCCCCC
Q 025812 235 FNQQPKIDLPIFQ 247 (247)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (247)
..-.|.-||||||
T Consensus 236 ~~~~~~~~~~~~~ 248 (248)
T PLN02832 236 ISLEPPKDLPIFQ 248 (248)
T ss_pred ccccCcccCCCcC
Confidence 4557888999998
No 2
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-46 Score=307.59 Aligned_cols=190 Identities=29% Similarity=0.452 Sum_probs=166.3
Q ss_pred CEEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-C-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G-~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|+|+|+++ .||+.|+.++|+++|++++++++++++.++|.||+|| | ++++|+.|++ .++.+.|+++++.++|+|||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~-~gl~~~i~~~~~~~kP~LGI 80 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRE-RGLIEAIKEAVESGKPFLGI 80 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHh-cchHHHHHHHHhcCCCEEEE
Confidence 68999998 6899999999999999999999999999999999999 7 7888999976 58999999999999999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--CeE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~ 155 (247)
|+|||+|++.+++. +..++||+++++|.+.+. .++++||||||.+... ..+|+|+++++ .+|
T Consensus 81 ClGMQlLfe~SeE~--~~~~GLg~i~G~V~r~~~--------~~~kvPHMGWN~l~~~------~~~~l~~gi~~~~~~Y 144 (204)
T COG0118 81 CLGMQLLFERSEEG--GGVKGLGLIPGKVVRFPA--------EDLKVPHMGWNQVEFV------RGHPLFKGIPDGAYFY 144 (204)
T ss_pred eHhHHhhhhccccc--CCCCCcceecceEEEcCC--------CCCCCCccccceeecc------CCChhhcCCCCCCEEE
Confidence 99999999998763 345899999999999641 2379999999987542 36899999864 799
Q ss_pred EEEEEeCCC-CC----CCCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHH
Q 025812 156 VLADYPVPS-NK----ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMM 207 (247)
Q Consensus 156 ~~hs~~~~~-~~----~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~ 207 (247)
|+|||++++ .+ ++++|+..+.+++.++|++|+|||||+|++. ++++||++++
T Consensus 145 FVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 145 FVHSYYVPPGNPETVVATTDYGEPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEEEeecCCCCceEEEeccCCCeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 999999875 22 2588988899999999999999999999986 6999999875
No 3
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=4.2e-37 Score=257.57 Aligned_cols=178 Identities=20% Similarity=0.329 Sum_probs=147.1
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
.|+|+++ .||+.++.++|+++|++++++++++++.++|+||+||+ . .+++..|++ .++.+.|++ +.++|+||||
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC 77 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC 77 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence 0999998 57999999999999999999999999999999999995 4 556777764 578889988 5699999999
Q ss_pred hhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEE
Q 025812 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~h 158 (247)
+|||+|++.+++ +..++||+++++|.|.+ +.+++||+|||.+.. ..++++ ..+||+|
T Consensus 78 lGmQlL~~~~~e---g~~~GLgll~~~V~rf~---------~~~~vph~GWn~~~~--------~~~l~~---~~~yFVh 134 (192)
T PRK13142 78 LGMQLMYEHSDE---GDASGLGFIPGNISRIQ---------TEYPVPHLGWNNLVS--------KHPMLN---QDVYFVH 134 (192)
T ss_pred HHHHHHhhhccc---CCcCccCceeEEEEECC---------CCCCCCcccccccCC--------CCcccc---cEEEEEC
Confidence 999999999854 45678999999999852 346899999997641 344553 4689999
Q ss_pred EEeCCCCC---CCCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 159 DYPVPSNK---ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 159 s~~~~~~~---~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
||++...+ +++.|+..+.++++++|++|+|||||+|++. ++++||++
T Consensus 135 Sy~v~~~~~v~~~~~yg~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~ 186 (192)
T PRK13142 135 SYQAPMSENVIAYAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQ 186 (192)
T ss_pred CCeECCCCCEEEEEECCCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHh
Confidence 99984222 2467777788999999999999999999976 69999975
No 4
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=100.00 E-value=3.8e-36 Score=255.96 Aligned_cols=195 Identities=19% Similarity=0.319 Sum_probs=153.8
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|||+|++++ ||+.++.++|+++|++++++++++++.++|+||+|| |. ...+..+++ .++.+.|++++++++|+|||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI 80 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI 80 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence 799999997 999999999999999999999888888999999999 54 455777754 57888999999999999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--CeE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~ 155 (247)
|+|||+|++.+++ +..+++|+++++|++.+. ...+++||+||+.+..+.-..-..++++|+++++ .++
T Consensus 81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~ 150 (210)
T CHL00188 81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY 150 (210)
T ss_pred CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence 9999999998754 456899999999988631 2346899999998754210000001468888865 478
Q ss_pred EEEEEeCCC-CCC----CCCCC-CcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHH
Q 025812 156 VLADYPVPS-NKE----NAMPE-KKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 206 (247)
Q Consensus 156 ~~hs~~~~~-~~~----~~~~~-~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~ 206 (247)
++|||.+.+ ... ++.++ ..++++++.++++|+|||||++... .+++||++.
T Consensus 151 ~~HS~~v~p~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 151 FVHSYGVMPKSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred EeCccEecCCCCceEEEEEecCCcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 899998743 222 34453 5678999999999999999999543 699999864
No 5
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=3.9e-34 Score=243.60 Aligned_cols=192 Identities=19% Similarity=0.335 Sum_probs=150.8
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC--chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG--~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
.|+|+++ .||..|+.++|+.++.+++++++++++.++|+||+||+ +.+++.++++ .++.+.|++++++++|+||||
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC 79 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC 79 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence 0999998 57999999999999999999999999999999999995 3566777754 688999999999999999999
Q ss_pred hhHHHHHHhhhcccC----CCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--
Q 025812 79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~----g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-- 152 (247)
+|||+|++++++... +..++||+++++|++.+ ....++||+||+.+...+ . ..+++|.++++
T Consensus 80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~--------~~~~~~ph~Gw~~v~~~~-~---~~~~lf~~l~~~~ 147 (210)
T PRK14004 80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFE--------GKDFKVPHIGWNRLQIRR-K---DKSKLLKGIGDQS 147 (210)
T ss_pred HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcC--------CCCCcCCccCcccceecc-C---CCCccccCCCCCC
Confidence 999999999976322 23679999999998853 123578999999875321 0 25678888865
Q ss_pred CeEEEEEEeCCCCC--C---CCCC-CCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHH
Q 025812 153 DVDVLADYPVPSNK--E---NAMP-EKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 206 (247)
Q Consensus 153 ~~~~~hs~~~~~~~--~---~~~~-~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~ 206 (247)
.++++|||...... + .+.+ +..+.+++.++++||+|||||++... .+++||++.
T Consensus 148 ~v~~~HS~~~~~~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~ 209 (210)
T PRK14004 148 FFYFIHSYRPTGAEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEF 209 (210)
T ss_pred EEEEeceeecCCCCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhh
Confidence 46788998643211 1 2334 33455667789999999999999964 699999875
No 6
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=7.6e-34 Score=239.63 Aligned_cols=185 Identities=24% Similarity=0.436 Sum_probs=146.4
Q ss_pred CEEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|||+|+++ .||+.++.++|+++|++++++++++++.++|+||||| |. .+.+..+++ ..+.+.|++ .++|+|||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI 76 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI 76 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence 89999998 5788999999999999999999999999999999999 64 455667754 466777765 48999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--CeE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~ 155 (247)
|+|+|+|++++++. +..+++|++++++.+.+. ...++|++||+.+... .++++++++++ .++
T Consensus 77 ClG~Qll~~~~~~~--~~~~~lg~~~g~v~~~~~--------~~~~~p~~G~~~v~~~------~~~~l~~~l~~~~~v~ 140 (196)
T PRK13170 77 CLGMQLLGERSEES--GGVDCLGIIDGPVKKMTD--------FGLPLPHMGWNQVTPQ------AGHPLFQGIEDGSYFY 140 (196)
T ss_pred CHHHHHHhhhcccC--CCCCCcccccEEEEECCC--------CCCCCCccccceeEeC------CCChhhhCCCcCCEEE
Confidence 99999999998542 236789999999988521 2257899999876421 25678888754 467
Q ss_pred EEEEEeCCCCCC---CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 156 VLADYPVPSNKE---NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 156 ~~hs~~~~~~~~---~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
++|+|..++... ++++++.++++++++++||+|||||++... .+++||++
T Consensus 141 ~~Hs~~lp~~~~~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 141 FVHSYAMPVNEYTIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EECeeecCCCCcEEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 789988765432 345556777888889999999999999754 69999986
No 7
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-33 Score=227.97 Aligned_cols=191 Identities=52% Similarity=0.840 Sum_probs=167.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCC-CeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G-~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
|||+||+++|++.+.++++++++ ++++.++.++|++.+|+||||||+++.+.+|.++.++.+.|++++++|+|+||.|+
T Consensus 1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA 80 (194)
T COG0311 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA 80 (194)
T ss_pred CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence 89999999999999999999995 99999999999999999999999999999888878999999999999999999999
Q ss_pred hHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEE
Q 025812 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD 159 (247)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs 159 (247)
|+.+|++...+ +...+.||+++.+|.||.+|+++.||..++.+...+-. ..++.+|.+.|.+....+.++++.+
T Consensus 81 GlIlLakei~~--~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~----~~~~avFIRAP~I~~vg~~V~vLa~ 154 (194)
T COG0311 81 GLILLAKEILD--GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLP----FPFPAVFIRAPVIEEVGDGVEVLAT 154 (194)
T ss_pred hhhhhhhhhcC--CCCCcccceEEEEEEccccccccccceeeEEeecccCC----CcceEEEEEcceeehhcCcceEeee
Confidence 99999998764 13457799999999999999999999876665544321 1146789999999888778999988
Q ss_pred EeCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHh
Q 025812 160 YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 209 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~ 209 (247)
+. ..+.+++++|++|+.||||++.+.++.++|++++..
T Consensus 155 l~------------~~iVav~qgn~LatsFHPELT~D~r~Heyf~~~v~~ 192 (194)
T COG0311 155 LD------------GRIVAVKQGNILATSFHPELTDDTRLHEYFLDMVLG 192 (194)
T ss_pred eC------------CEEEEEEeCCEEEEecCccccCCccHHHHHHHHhhc
Confidence 73 367888999999999999999999999999988764
No 8
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=1.9e-32 Score=226.22 Aligned_cols=176 Identities=43% Similarity=0.740 Sum_probs=152.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+||+++|++++..++|+++|+++++++++++++++|+||||||+.+.+..+.++.++.+.|+++++ ++|++|||+|
T Consensus 3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG 81 (179)
T PRK13526 3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG 81 (179)
T ss_pred cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence 699999999999999999999999999999999999999999999965443344344678999999885 7899999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~ 160 (247)
+|+|++.. ++||+++++|.++.+|++..||...+.++ .. .++.+|.+.|.+...+++++++++|
T Consensus 82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~-----~~---~~~~vFiRAP~i~~~~~~v~vla~~ 145 (179)
T PRK13526 82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFN-----DK---NITGVFIRAPKFIVVGNQVDILSKY 145 (179)
T ss_pred HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcC-----Cc---eEEEEEEcCceEeEcCCCcEEEEEE
Confidence 99999752 46999999999999999988875544443 22 2788999999999888999999998
Q ss_pred eCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHH
Q 025812 161 PVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 205 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~ 205 (247)
. ..+.+++++|++|+-||||+|.+.++.+.|++
T Consensus 146 ~------------~~~v~v~q~~~l~~~FHPElt~d~r~h~~f~~ 178 (179)
T PRK13526 146 Q------------NSPVLLRQANILVSSFHPELTQDPTVHEYFLA 178 (179)
T ss_pred C------------CEEEEEEECCEEEEEeCCccCCCchHHHHHhc
Confidence 4 45788999999999999999999999999985
No 9
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=2.7e-32 Score=232.36 Aligned_cols=190 Identities=25% Similarity=0.343 Sum_probs=144.8
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCC--eEEEECCccCCCCCCEEEECCC--chhHHHHHHhhCCHHHHHHHHH-HcCCcE
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFV-KMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G~--~v~~~~~~~~l~~~d~lilpGG--~~~~~~~l~~~~~~~~~i~~~~-~~g~Pi 74 (247)
|||+|+++. ||+.++.++|+++|+ ++.+++++++++++|+|||||+ +.+.+..+++ ..+.+.+++.. +.++|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~Pv 80 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRA-VGLGEAVIEAVLAAGRPF 80 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHH-CCcHHHHHHHHHhCCCcE
Confidence 799999984 689999999999999 8889999999999999999995 2334455654 35556555554 589999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEee-ccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC-
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP- 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~-~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~- 152 (247)
||||+|+|+|+++..+. +..+++|++++++.++ +.+ ...++|++||+.++.. .++++|+++++
T Consensus 81 lGiC~G~q~l~~~~~e~--~~~~glg~l~g~v~~~~~~~-------~~~~~p~~G~~~v~~~------~~~~lf~~~~~~ 145 (209)
T PRK13146 81 LGICVGMQLLFERGLEH--GDTPGLGLIPGEVVRFQPDG-------PALKVPHMGWNTVDQT------RDHPLFAGIPDG 145 (209)
T ss_pred EEECHHHHHHhhccccc--CCCCCcceEeEEEEEcCCCC-------CCCccCccChHHeeeC------CCChhccCCCCC
Confidence 99999999999985432 3578899999999986 211 2246899999986531 35788988864
Q ss_pred -CeEEEEEEeCCC-CCC----CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHH
Q 025812 153 -DVDVLADYPVPS-NKE----NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 206 (247)
Q Consensus 153 -~~~~~hs~~~~~-~~~----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~ 206 (247)
.++++||+.+.+ ++. ++++++.++++..++++||+|||||++... .+++||++.
T Consensus 146 ~~v~~~Hs~~v~~~~~~~~la~s~~~~~~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~ 207 (209)
T PRK13146 146 ARFYFVHSYYAQPANPADVVAWTDYGGPFTAAVARDNLFATQFHPEKSQDAGLALLRNFLAW 207 (209)
T ss_pred CEEEEEeEEEEEcCCCCcEEEEEcCCCEEEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 467789988632 221 344444566667788999999999998643 699999976
No 10
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=100.00 E-value=5.6e-32 Score=222.73 Aligned_cols=183 Identities=60% Similarity=0.988 Sum_probs=153.4
Q ss_pred EEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC-CcEEEEehhHHH
Q 025812 5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF 83 (247)
Q Consensus 5 vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g-~PilGIC~G~Ql 83 (247)
||+.+|+|.+.++.|+++|++.+.++.+++|+++|+||||||+++.+..+.++.++.+.||+++.+| +|+||+|+|+.+
T Consensus 1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 7999999999999999999999999999999999999999999999988877789999999999998 999999999999
Q ss_pred HHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC--CCeEEEEEEe
Q 025812 84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP 161 (247)
Q Consensus 84 L~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~--~~~~~~hs~~ 161 (247)
|++..++ .+.+.||+++.+|.||.+|+++.||..++.++..+ ..++.+|.+.|.+..+. +.+.++..+.
T Consensus 81 La~~v~~---~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~vla~~~ 151 (188)
T PF01174_consen 81 LAKEVEG---QGQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVEVLAELD 151 (188)
T ss_dssp HEEEECS---SCCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEEEEEEET
T ss_pred hhhhhhh---cccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeecccccccccccc
Confidence 9998765 35667999999999999999999998777777655 23788999999998875 6788887763
Q ss_pred CCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCc-hHHHHHHHHHHH
Q 025812 162 VPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWHSYFLKMMS 208 (247)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~-~~i~~nfl~~~~ 208 (247)
..+.+++++|++|+-||||++.+ .+|.++|++++.
T Consensus 152 ------------g~iVav~qgn~latsFHPELT~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 152 ------------GKIVAVRQGNILATSFHPELTDDDTRIHEYFLEMVV 187 (188)
T ss_dssp ------------TEEEEEEETTEEEESS-GGGSSTHCHHHHHHHHHHC
T ss_pred ------------cceEEEEecCEEEEEeCCcccCchhHHHHHHHHHhh
Confidence 35678889999999999999999 899999999873
No 11
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=2.8e-31 Score=224.30 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=145.9
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
.|+|+++ .||+.++.++|+++|++++++++++++.++|+||+||+ . .+.++++.. .++.+.|+++++.++|+||||
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence 0999998 46899999999999999999998888999999999994 3 344555544 467889999999999999999
Q ss_pred hhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--CeEE
Q 025812 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV 156 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~~ 156 (247)
+|+|+|+.++++ +..+++|++++++.+.+.+ ..+.+++||..++.. .++++++.+++ .++.
T Consensus 80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~--------~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~~~~ 142 (199)
T PRK13181 80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSE--------PLKVPQMGWNSVKPL------KESPLFKGIEEGSYFYF 142 (199)
T ss_pred HhHHHhhhhccc---CCcCCcceEEEEEEEcCCC--------CCCCCccCccccccC------CCChhHcCCCCCCEEEE
Confidence 999999999864 4678899999999886311 135689999876532 25788888865 4567
Q ss_pred EEEEeCCCCC-----CCCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 157 LADYPVPSNK-----ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 157 ~hs~~~~~~~-----~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
+|++.+.+.+ +++.+++.++++++.+++||+|||||++... .+++||++
T Consensus 143 ~Hs~~v~~~~~~~~lA~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 143 VHSYYVPCEDPEDVLATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred eCeeEeccCCcccEEEEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 8998874322 1344445677788888999999999998643 69999985
No 12
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.98 E-value=1.3e-30 Score=218.70 Aligned_cols=181 Identities=48% Similarity=0.743 Sum_probs=136.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+|+.++||+.+..++|+..|++++.++++++++++|+||+|||....++.+.....+.+.|+++.++++|+||||+|
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 81 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence 89999999999999999999999999999988889999999999997666555554456778999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--eEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLA 158 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~~~~h 158 (247)
+|+|++++++. ..+++|++++++.+++.|.++. +. ..++++.++++. +++.|
T Consensus 82 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~g------------~~-----------~~~~~~~~~~~~~~~~~~H 135 (189)
T PRK13525 82 MILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVD------------SF-----------EAELDIKGLGEPFPAVFIR 135 (189)
T ss_pred HHHHHhhcccC---CCCceeeEEEEEEEccCCCcee------------eE-----------EecccccCCCCCeEEEEEe
Confidence 99999998652 5688999999998875443221 11 112333333323 33445
Q ss_pred EEeCC--CCCC--CCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 159 DYPVP--SNKE--NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 159 s~~~~--~~~~--~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
++.+. ++.+ .+... ....+++.+++||+|||||++.+.+|++||+++|.
T Consensus 136 ~d~v~~lp~~~~vlA~~~-~~~~~~~~~~~~g~QfHPE~~~~~~~~~~f~~~~~ 188 (189)
T PRK13525 136 APYIEEVGPGVEVLATVG-GRIVAVRQGNILATSFHPELTDDTRVHRYFLEMVK 188 (189)
T ss_pred CceeeccCCCcEEEEEcC-CEEEEEEeCCEEEEEeCCccCCCchHHHHHHHHhh
Confidence 54442 1222 11111 23346778899999999999998899999999985
No 13
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=2.9e-31 Score=224.66 Aligned_cols=188 Identities=22% Similarity=0.380 Sum_probs=143.7
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHH-HcCCcEEEE
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFV-KMGKPVWGT 77 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~-~~g~PilGI 77 (247)
.|+|+++ .||..++.++|+++|++++++++++++.++|+|||||+ . .+.+..+++ .++.+.|++++ +.++|+|||
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi 79 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI 79 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence 0999998 57999999999999999999999988999999999994 3 344555543 46677777764 789999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--CeE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~ 155 (247)
|+|||+|+.+..+ ++..++||+++++|.+... ....+++|+||+.+... .++++++++++ .++
T Consensus 80 C~G~Q~l~~~~~~--~~~~~~lg~~~g~v~~~~~-------~~~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 144 (201)
T PRK13152 80 CLGMQLFLERGYE--GGVCEGLGFIEGEVVKFEE-------DLNLKIPHMGWNELEIL------KQSPLYQGIPEKSDFY 144 (201)
T ss_pred CHhHHHHhhcccc--cCCcCCcccccEEEEECCC-------CCCCcCCccCeEEEEEC------CCChhhhCCCCCCeEE
Confidence 9999999997432 1346789999999987421 11235789999875421 36778888765 467
Q ss_pred EEEEEeCCCCC----CCCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 156 VLADYPVPSNK----ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 156 ~~hs~~~~~~~----~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
++||+++...+ +.+.++...++++++++++|+|||||++.+. ++++||++
T Consensus 145 ~vHS~~v~~~~~~v~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 145 FVHSFYVKCKDEFVSAKAQYGHKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EEcccEeecCCCcEEEEECCCCEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 89999874322 1345555677788899999999999998754 69999986
No 14
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.98 E-value=1.1e-30 Score=218.40 Aligned_cols=184 Identities=53% Similarity=0.907 Sum_probs=146.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
||+||.++|++.+..++|+++|+++++++++++++++|+||+|||+.+.+..+.+...+.+.|++++++++|+||||+|+
T Consensus 1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 69999999999999999999999999999999999999999999987666666555578889999999999999999999
Q ss_pred HHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEEe
Q 025812 82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161 (247)
Q Consensus 82 QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~ 161 (247)
|+|++++..... ..+|++++++.+++.|+++.++...+..+..+- ..+...+.+.|.+..+|+++.+++++.
T Consensus 81 qlL~~~~~~~~~---~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~~-----~~~~~~~~h~~~v~~lp~~~~vla~~~ 152 (184)
T TIGR03800 81 IMLAKEIIGQKE---GYLGLLDMTVERNAYGRQVDSFEAEVDIKGVGD-----DPITGVFIRAPKIVSVGNGVEILAKVG 152 (184)
T ss_pred HHHHhhhccCCC---CccCcEEEEEEeeccCCccccEEEEeecccCCC-----CcceEEEEcCCCcccCCCCeEEEEEeC
Confidence 999999854222 249999999999988877777653332222110 002233567888888889999998853
Q ss_pred CCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHH
Q 025812 162 VPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 205 (247)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~ 205 (247)
..+.+++.+++||+|||||++.+.++++.|++
T Consensus 153 ------------~~~~a~~~~~~~gvQfHPE~~~~~~~~~~f~~ 184 (184)
T TIGR03800 153 ------------NRIVAVRQGNILVSSFHPELTDDHRVHEYFLE 184 (184)
T ss_pred ------------CeeEEEEeCCEEEEEeCCccCCCchHHHHhhC
Confidence 12346678899999999999988899999973
No 15
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=2.1e-29 Score=213.18 Aligned_cols=188 Identities=22% Similarity=0.345 Sum_probs=142.9
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC--chhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG--~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|||+||++. ||+.++.++|+++|+++++++++.+++++|+||+||| +++.++++. .+.+.|++++++++|+|||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~i~~~~~~~~PilgI 77 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS---PLRDVILEAARSGKPFLGI 77 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH---HHHHHHHHHHHcCCCEEEE
Confidence 899999985 6777999999999999999988878889999999995 333344443 4678899999999999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC-CeEE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV 156 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 156 (247)
|+|+|+|++++.+ +...+++|++++++.+.+. ..++++.||..+... .+++++.+++. ...+
T Consensus 78 C~G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~---------~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 140 (200)
T PRK13143 78 CLGMQLLFESSEE--GGGVRGLGLFPGRVVRFPA---------GVKVPHMGWNTVKVV------KDCPLFEGIDGEYVYF 140 (200)
T ss_pred CHHHHHHhhhhcc--CCCCCCcceeeEEEEEcCC---------CCCCCeecceEEEEc------CCChhhccCCCcEEEE
Confidence 9999999998753 2346789999999987531 123567788764321 25677777633 3456
Q ss_pred EEEEeCCCCC-C----CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHHH
Q 025812 157 LADYPVPSNK-E----NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMS 208 (247)
Q Consensus 157 ~hs~~~~~~~-~----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~~ 208 (247)
+|++.+.+.+ . ++++++..+++..++++||+|||||++.+. +|++||++.++
T Consensus 141 ~Hs~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 141 VHSYYAYPDDEDYVVATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVELIK 199 (200)
T ss_pred EeeeeeCCCCcceEEEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHHHh
Confidence 8998875432 1 244445667777788999999999998754 69999998764
No 16
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.97 E-value=3.2e-29 Score=209.26 Aligned_cols=183 Identities=60% Similarity=1.006 Sum_probs=141.7
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHH
Q 025812 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~Q 82 (247)
|+||..+|++.+..++|++.|++++.+++.+++.++|+||+|||....++.+.+...+.+.|++++++++|+||||+|+|
T Consensus 1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q 80 (183)
T cd01749 1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI 80 (183)
T ss_pred CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence 78999999999999999999999999999888999999999999876655554445678899999999999999999999
Q ss_pred HHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEEeC
Q 025812 83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPV 162 (247)
Q Consensus 83 lL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~~ 162 (247)
+|++++++. +..+++|++++++.+++.|++..++...+..+..+ ...+..++.+.+.+..+++++.++.+..
T Consensus 81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~~~~~-----~~~~~~~~~h~~~v~~~p~~~~~la~~~- 152 (183)
T cd01749 81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLG-----LGPFPAVFIRAPVIEEVGPGVEVLAEYD- 152 (183)
T ss_pred HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEcCCCCcCC-----CCccEEEEEECcEEEEcCCCcEEEEecC-
Confidence 999999653 45789999999999987766655443222222111 1123445556666666666777666531
Q ss_pred CCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHH
Q 025812 163 PSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 204 (247)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl 204 (247)
..+.+++.++++|+|||||++.+.++++.|+
T Consensus 153 -----------~~~~a~~~~~~~g~qfHPE~~~~~~~~~~f~ 183 (183)
T cd01749 153 -----------GKIVAVRQGNVLATSFHPELTDDTRIHEYFL 183 (183)
T ss_pred -----------CEEEEEEECCEEEEEcCCccCCCcchhhhhC
Confidence 2234778889999999999998878988884
No 17
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.97 E-value=3e-29 Score=238.62 Aligned_cols=192 Identities=26% Similarity=0.366 Sum_probs=152.5
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC--chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG--~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
+|+|+++ .||+.++.++|+++|+++.++++++++.++|+||+||+ +.+.++.+.+ .++.+.|+++++.++|+||||
T Consensus 8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC 86 (538)
T PLN02617 8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC 86 (538)
T ss_pred eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence 6999998 58999999999999999999999889999999999994 3455666654 468899999999999999999
Q ss_pred hhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC-CCeEEE
Q 025812 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-PDVDVL 157 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~-~~~~~~ 157 (247)
+|||+|++++++. +..+++|++++++++.+. ...+++||+||+.+... .++|++.+++ ..++++
T Consensus 87 ~G~QlLa~~~~E~--g~~~glg~l~G~v~~~~~-------~~~~~vp~iGw~~V~~~------~~spL~~~l~~~~vy~v 151 (538)
T PLN02617 87 LGLQLLFESSEEN--GPVEGLGVIPGVVGRFDS-------SNGLRVPHIGWNALQIT------KDSELLDGVGGRHVYFV 151 (538)
T ss_pred HHHHHHhhhhhhc--CCccCcccccceEEECCc-------cCCCCCCeecceEEEec------CCChhHhcCCCcEEEEE
Confidence 9999999987542 457889999999988531 12357899999875421 3578887764 347789
Q ss_pred EEEeCCCCC-------CCCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHHHh
Q 025812 158 ADYPVPSNK-------ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMSE 209 (247)
Q Consensus 158 hs~~~~~~~-------~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~~~ 209 (247)
|+|+..+.+ +++.++..+++++++++++|+|||||++... .+++||++.+..
T Consensus 152 HSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 152 HSYRATPSDENKDWVLATCNYGGEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKSS 212 (538)
T ss_pred eEEEEEecCCCCcEEEEEEccCCCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhhh
Confidence 999863211 1244555678899999999999999998744 799999987763
No 18
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=3.6e-29 Score=211.16 Aligned_cols=186 Identities=26% Similarity=0.419 Sum_probs=139.2
Q ss_pred EEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 3 I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
|+|+++ .||+.++.++|+++|+++++++++++++++|+||+||+ . ++.++.+. ..++.+.|++++++++|+||||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLR-ERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHHH-HcChHHHHHHHHHCCCcEEEECH
Confidence 689998 46788999999999999999998888999999999995 3 23333443 34678999999999999999999
Q ss_pred hHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--eEEE
Q 025812 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVL 157 (247)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~~~~ 157 (247)
|+|+|+.++.+ ++..+++|++++++.+.+.+ ...+.+++||..+... .++++|+++++. ++.+
T Consensus 80 G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~-------~~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~v~~~ 144 (198)
T cd01748 80 GMQLLFESSEE--GGGTKGLGLIPGKVVRFPAS-------EGLKVPHMGWNQLEIT------KESPLFKGIPDGSYFYFV 144 (198)
T ss_pred HHHHhcccccc--CCCCCCCCCcceEEEECCCC-------CCceEEEeccceEEEC------CCChhhhCCCCCCeEEEE
Confidence 99999998743 23478899999999885311 0124578899875421 356788888654 5568
Q ss_pred EEEeCCCCC-C----CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHH
Q 025812 158 ADYPVPSNK-E----NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFL 204 (247)
Q Consensus 158 hs~~~~~~~-~----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl 204 (247)
|++.+.+.+ . ++++++.+++....+++||+|||||++.+. .+++||+
T Consensus 145 Hs~~v~~~~~~~~la~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf~ 198 (198)
T cd01748 145 HSYYAPPDDPDYILATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNFL 198 (198)
T ss_pred eEEEEecCCcceEEEEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhhC
Confidence 888874322 1 234444566666788999999999998654 5899984
No 19
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.96 E-value=8.4e-29 Score=208.85 Aligned_cols=184 Identities=28% Similarity=0.416 Sum_probs=140.5
Q ss_pred EEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 3 I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
|+|+++ .||+.++.++|+++|+++++++++++++++|+||+||+ . .+.+++++.. .....++++++.++|+||||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL 79 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence 678897 57899999999999999999998888899999999994 3 3446666542 333444888899999999999
Q ss_pred hHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--eEEE
Q 025812 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVL 157 (247)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~~~~ 157 (247)
|+|+|++++.+ .+..++||+++++|.+.+. .+.+++||..+... ..++++.++++. ++.+
T Consensus 80 G~Qll~~~~~~--~~~~~glg~~~~~v~~~~~----------~~~~~~g~~~~~~~------~~~~l~~~l~~~~~v~~~ 141 (196)
T TIGR01855 80 GMQLLFERSEE--GGGVPGLGLIKGNVVKLEA----------RKVPHMGWNEVHPV------KESPLLNGIDEGAYFYFV 141 (196)
T ss_pred HHHHhhhcccc--CCCCCCcceeeEEEEECCC----------CCCCcccCeeeeeC------CCChHHhCCCCCCEEEEE
Confidence 99999999744 2457889999999988631 14678899765321 357788888664 5567
Q ss_pred EEEeCCCCC-C---CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 158 ADYPVPSNK-E---NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 158 hs~~~~~~~-~---~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
|++.+.+.+ . .++.++.++++++.+++||+|||||++... .+++||++
T Consensus 142 Hs~~v~~~~~~~~a~~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 142 HSYYAVCEEEAVLAYADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred CeeEecCCCCcEEEEEcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 887764332 1 244456777888899999999999988643 69999985
No 20
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.5e-28 Score=208.57 Aligned_cols=191 Identities=25% Similarity=0.393 Sum_probs=143.4
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
+|+||++. +|..++.++|++.|+++.++++++++.++|+||+|||. ++.+..+. ..++.+.|+++++.++|+||||
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pvlGIC 79 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLR-ERGLDEVIKEAVASGKPLLGIC 79 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHH-HcChHHHHHHHHHCCCcEEEEC
Confidence 38999985 56779999999999999999988889999999999953 33333333 2467889999999999999999
Q ss_pred hhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--eEE
Q 025812 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDV 156 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~~~ 156 (247)
+|+|+|++.+.+ .+..+++|++++++.+++.+ ....+++.||..+..+ .++++++.++.. ++.
T Consensus 80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~-------~~~~~~~~g~~~i~~~------~~~~l~~~l~~~~~v~~ 144 (205)
T PRK13141 80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPE-------EGLKVPHMGWNQLELK------KESPLLKGIPDGAYVYF 144 (205)
T ss_pred HHHHHhhhcccc--CCCCCccceEEEEEEEcCCC-------CCCcccEecCccceeC------CCChhhhCCCCCCEEEE
Confidence 999999998743 24578899999999986311 1234678899775432 257888887654 566
Q ss_pred EEEEeCCCCCC-----CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHHH
Q 025812 157 LADYPVPSNKE-----NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMS 208 (247)
Q Consensus 157 ~hs~~~~~~~~-----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~~ 208 (247)
+|++++.+.+. .++.+..+++....+++||+|||||++... .+++||++.|+
T Consensus 145 ~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 145 VHSYYADPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMVE 203 (205)
T ss_pred ECeeEeccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHhh
Confidence 89888743321 223333455556678999999999998643 69999998874
No 21
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.96 E-value=6.4e-29 Score=218.98 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=156.8
Q ss_pred EEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-C-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 3 I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G-~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
+-+|++ .||+.++.++|+.+|+++..+.+|.|+.++|.||+|| | +...++.|.+ +++.+.|+++++.|+|++|||.
T Consensus 4 v~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgicv 82 (541)
T KOG0623|consen 4 VTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGICV 82 (541)
T ss_pred EEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeehh
Confidence 567786 6999999999999999999999999999999999999 6 6666787764 6899999999999999999999
Q ss_pred hHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC-CCeEEEE
Q 025812 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-PDVDVLA 158 (247)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~-~~~~~~h 158 (247)
|+|+|...+.+ .+..++||.+|+.+.|.. .....+||+|||++... .++.+|...| ..+||+|
T Consensus 83 GlQaLF~gSvE--~p~skGLgvipg~v~RFD--------~s~k~VPhIGWNsc~v~------sd~effg~~p~~~~YFVH 146 (541)
T KOG0623|consen 83 GLQALFDGSVE--NPPSKGLGVIPGIVGRFD--------ASAKIVPHIGWNSCQVG------SDSEFFGDVPNRHVYFVH 146 (541)
T ss_pred hHHHHhccccc--CCCcCcccccccceeccc--------CCCCcCCcccccccccC------CcccccccCCCceEEEEe
Confidence 99999988754 255789999999998753 12346999999987531 2344444334 4689999
Q ss_pred EEeCCCCC----------CCCCCCC-cEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH---------HHHhcccCccC
Q 025812 159 DYPVPSNK----------ENAMPEK-KVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK---------MMSEVGEGTSS 216 (247)
Q Consensus 159 s~~~~~~~----------~~~~~~~-~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~---------~~~~~~~~~~~ 216 (247)
||-.+..+ +++.|+. .++++++++|++++|||||+++.. ..+++|+. ...+.+|+.-|
T Consensus 147 Syl~~ek~~~len~~wkiat~kYG~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~~~~ppips~e~~kl~en~~s 226 (541)
T KOG0623|consen 147 SYLNREKPKSLENKDWKIATCKYGSESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLHQQSPPIPSAETQKLMENKAS 226 (541)
T ss_pred eecccccccCCCCCCceEeeeccCcHHHHHHHhcCceeeEecccccccchhHHHHHHHHhccCCCCCchhhhhhhhccch
Confidence 99543211 2466774 688899999999999999999987 58999998 33455666555
No 22
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.96 E-value=2.9e-27 Score=200.02 Aligned_cols=184 Identities=42% Similarity=0.652 Sum_probs=126.5
Q ss_pred CEEEEEecCCChH----HHHHHHHhCCCeEEE--ECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGSFN----EHIAALKRLGVKGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~~~----~~~~~L~~~G~~v~~--~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|||+||.++|+.. .+.++|++.|.++.+ ++.++++.++|+||+|||+...++.+..+..+.+.|++++++++|+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence 9999999999877 456788889986554 4555678899999999997665555544456789999999999999
Q ss_pred EEEehhHHHHHHhhhcc-c-CCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC
Q 025812 75 WGTCAGLIFLANKAVGQ-K-LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~-~-~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~ 152 (247)
||||+|+|+|++++++. . +...+++|++++++.+++.|+....+ ..++++.++++
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~-----------------------~~~~~~~~~~~ 137 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSF-----------------------EAEIDLSGLDG 137 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccE-----------------------EEeEeccccCC
Confidence 99999999999998642 1 22356899999988776433211110 01222333333
Q ss_pred Ce--EEEEEEeCCC--CCC--CCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 153 DV--DVLADYPVPS--NKE--NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 153 ~~--~~~hs~~~~~--~~~--~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
.+ .++|++.+.. +.. .+.+... ..+++.+++||+|||||++.+..++++|+..+.
T Consensus 138 ~~~~~~~H~~~v~~lp~~~~~la~~~~~-~~a~~~~~~~g~QfHPE~~~~~~l~~~f~~~~~ 198 (200)
T PRK13527 138 PFHAVFIRAPAITKVGGDVEVLAKLDDR-IVAVEQGNVLATAFHPELTDDTRIHEYFLKKVK 198 (200)
T ss_pred cceEEEEccccccccCCCeEEEEEECCE-EEEEEECCEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 32 2344443321 111 1111122 335678899999999999998899999998874
No 23
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.94 E-value=3.8e-26 Score=191.73 Aligned_cols=169 Identities=18% Similarity=0.284 Sum_probs=117.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC----ccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~----~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|||.|+++.++|. ++.++|+++|+++.+++. +++++++|+||++||.... ++.. .+.+.|++ ++.++|+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~~---~~~~~i~~-~~~~~PiL 76 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAYP---QLFAMLER-YHQHKSIL 76 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHhh---HHHHHHHH-hcCCCCEE
Confidence 8999999989888 688999999999998773 3456789999998875422 1111 23566765 57899999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~-- 153 (247)
|||+|||+|+.+++ ++|.+.+ +.++.+|+.+.. -.++++++++++.
T Consensus 77 GIClG~Qlla~~~G--------------g~V~~~~------------~~~~g~~~~v~~------~~~~~l~~~~~~~~~ 124 (190)
T PRK06895 77 GVCLGHQTLCEFFG--------------GELYNLN------------NVRHGQQRPLKV------RSNSPLFDGLPEEFN 124 (190)
T ss_pred EEcHHHHHHHHHhC--------------CeEeecC------------CCccCceEEEEE------CCCChhhhcCCCceE
Confidence 99999999999962 5665531 234545543321 0257788888665
Q ss_pred eEEEEEEeCCC-C-CC----CCCCCCcEEEEEeeCC--EEEEeeCCCCCCch---HHHHHHHHH
Q 025812 154 VDVLADYPVPS-N-KE----NAMPEKKVIVAVRQGN--LLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 154 ~~~~hs~~~~~-~-~~----~~~~~~~~~~~~~~~~--i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
++++|++.+.+ . +. ++.+....+++++.++ +||+|||||+...+ .+++||++.
T Consensus 125 v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~~ 188 (190)
T PRK06895 125 IGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLAI 188 (190)
T ss_pred EEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHhh
Confidence 45578877632 1 11 2334446677887654 99999999974432 799999863
No 24
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=1.4e-24 Score=179.30 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=117.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-C-----CCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q-----LQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-~-----l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|.++++.++|. +++++|+++|++++++++.+ + ..++|+||+ || |.|+... -..+.|+++ ...
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G------~~~~~i~~~-~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAG------ISLELIRRF-AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcc------hHHHHHHHh-cCC
Confidence 5799999988888 78999999999999988762 1 235899999 66 6664221 246778877 667
Q ss_pred CcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC
Q 025812 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (247)
Q Consensus 72 ~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~ 151 (247)
+|+||||+|||.|+.+++ ++|.+.+ .+.+|-.+.. .+ ....+|++++
T Consensus 75 ~PiLGVCLGHQai~~~fG--------------g~V~~a~-------------~~~HGK~s~i---~h---~g~~iF~glp 121 (191)
T COG0512 75 IPILGVCLGHQAIAEAFG--------------GKVVRAK-------------EPMHGKTSII---TH---DGSGLFAGLP 121 (191)
T ss_pred CCEEEECccHHHHHHHhC--------------CEEEecC-------------CCcCCeeeee---ec---CCcccccCCC
Confidence 999999999999999972 6666642 2233322211 01 2467899997
Q ss_pred CCe--EEEEEEeCCCC--CC----CCCC-CCcEEEEEee--CCEEEEeeCCCCCCch---HHHHHHHHHH
Q 025812 152 PDV--DVLADYPVPSN--KE----NAMP-EKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMM 207 (247)
Q Consensus 152 ~~~--~~~hs~~~~~~--~~----~~~~-~~~~~~~~~~--~~i~gvQFHPE~s~~~---~i~~nfl~~~ 207 (247)
+.+ .+|||..+.+. +. ++.. ....+++++. .+++|+|||||.--+. ++++||++++
T Consensus 122 ~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~~ 191 (191)
T COG0512 122 NPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRLA 191 (191)
T ss_pred CCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhhC
Confidence 754 56899886542 21 2222 1257888874 5799999999965543 7999999763
No 25
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.91 E-value=4.5e-24 Score=178.70 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=112.0
Q ss_pred EEEEecC-CChHHHHHHHHhCCCeEEEECCc---cCCCCCC--EEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKP---DQLQNVS--SLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 3 I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~---~~l~~~d--~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
|+|+++. ++..++.++|+++|+++.+++.. +++.++| +||+|||....++ ....+.++++++.++|+||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~-----~~~~~~i~~~~~~~~PilG 75 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYA-----ENAPRADEKIFELGVPVLG 75 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCc-----CCchHHHHHHHhCCCCEEE
Confidence 5789974 56668999999999999887543 3454444 9999998654322 1235677888889999999
Q ss_pred EehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--e
Q 025812 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~ 154 (247)
||+|||+|+.+++ +++.+. +.+++||..+... ..++++.++++. +
T Consensus 76 IC~G~Qll~~~lg--------------g~v~~~-------------~~~~~g~~~v~~~------~~~~l~~~~~~~~~~ 122 (188)
T TIGR00888 76 ICYGMQLMAKQLG--------------GEVGRA-------------EKREYGKAELEIL------DEDDLFRGLPDESTV 122 (188)
T ss_pred ECHHHHHHHHhcC--------------ceEecC-------------CCccceeEEEEEe------cCCHhhcCCCCCcEE
Confidence 9999999999862 455543 1346677654321 245677776554 4
Q ss_pred EEEEEEeCCC--CCC--CCCCCCcEEEEEe-eC-CEEEEeeCCCCCCch---HHHHHHHHH
Q 025812 155 DVLADYPVPS--NKE--NAMPEKKVIVAVR-QG-NLLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 155 ~~~hs~~~~~--~~~--~~~~~~~~~~~~~-~~-~i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
+..|++.+.. ... .+......+++++ ++ +++|+|||||++.+. .|++||++.
T Consensus 123 ~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~ 183 (188)
T TIGR00888 123 WMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYD 183 (188)
T ss_pred EeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHH
Confidence 4567777532 111 1111123455555 33 899999999998753 699999983
No 26
>PRK00758 GMP synthase subunit A; Validated
Probab=99.91 E-value=6.7e-24 Score=177.05 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=109.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECC---ccCCCCC-CEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~~~-d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
.|+|+++.+.+. ++.++|+++|+++++++. ++++.++ |+||+|||.. +++. ..+.+.++ +.++|+||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilG 72 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILG 72 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEE
Confidence 199999876666 688999999999988773 3456777 9999999973 2332 12334444 46899999
Q ss_pred EehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe--
Q 025812 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV-- 154 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~-- 154 (247)
||+|||+|+.+++ ++|.+.+ .+++||..+... ..++++.++++.+
T Consensus 73 IC~G~Q~L~~a~G--------------g~v~~~~-------------~~~~g~~~i~~~------~~~~l~~~~~~~~~~ 119 (184)
T PRK00758 73 ICLGHQLIAKAFG--------------GEVGRGE-------------YGEYALVEVEIL------DEDDILKGLPPEIRV 119 (184)
T ss_pred EeHHHHHHHHhcC--------------cEEecCC-------------CceeeeEEEEEc------CCChhhhCCCCCcEE
Confidence 9999999999962 4555431 234566443211 2345666665544
Q ss_pred EEEEEEeCCC--CCC----CCCCCCcEEEEEee--CCEEEEeeCCCCCCch---HHHHHHHHHHHhc
Q 025812 155 DVLADYPVPS--NKE----NAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMSEV 210 (247)
Q Consensus 155 ~~~hs~~~~~--~~~----~~~~~~~~~~~~~~--~~i~gvQFHPE~s~~~---~i~~nfl~~~~~~ 210 (247)
+..|++.+.. ... ++++ ..+++++. .+++|+|||||++.+. .|++||++.|.++
T Consensus 120 ~~~H~~~v~~l~~~~~~la~~~~--~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~~~~~ 184 (184)
T PRK00758 120 WASHADEVKELPDGFEILARSDI--CEVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEICGKY 184 (184)
T ss_pred EeehhhhhhhCCCCCEEEEECCC--CCEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHHHccC
Confidence 4456665422 111 2222 23556553 4599999999997652 6999999887653
No 27
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=2e-23 Score=173.29 Aligned_cols=164 Identities=21% Similarity=0.277 Sum_probs=108.0
Q ss_pred EEEEecC-CChHHHHHHHHhCCCeEEEECCcc-----CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 3 I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
|+|+++. ++..++.++|+++|+++++++... ++.++|+||+|||.....+. ......+...+.++|+||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~-----~~~~~~~~~~~~~~PilG 75 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEE-----DAPRVDPEIFELGVPVLG 75 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCccccccc-----ccchhhHHHHhcCCCEEE
Confidence 5789975 455578999999999998887543 46789999999986533221 011223444556999999
Q ss_pred EehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--e
Q 025812 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~--~ 154 (247)
||+|||+|+.+++ +++.+. ..+++||+.+... ..++++.+++.. +
T Consensus 76 IC~G~Qll~~~~g--------------g~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~~ 122 (181)
T cd01742 76 ICYGMQLIAKALG--------------GKVERG-------------DKREYGKAEIEID------DSSPLFEGLPDEQTV 122 (181)
T ss_pred EcHHHHHHHHhcC--------------CeEEeC-------------CCCcceEEEEEec------CCChhhcCCCCceEE
Confidence 9999999999862 455553 1246677654211 246777777554 4
Q ss_pred EEEEEEeCCC--CCC--CCCCCCcEEEEEee--CCEEEEeeCCCCCCch---HHHHHHH
Q 025812 155 DVLADYPVPS--NKE--NAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFL 204 (247)
Q Consensus 155 ~~~hs~~~~~--~~~--~~~~~~~~~~~~~~--~~i~gvQFHPE~s~~~---~i~~nfl 204 (247)
+..|++.+.. ... .+......+++++. .++||+|||||++.+. .+++||+
T Consensus 123 ~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 123 WMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEcCCccccCcChHHHHHhhC
Confidence 4567776532 221 11111233455553 3899999999998752 6999984
No 28
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=168.64 Aligned_cols=195 Identities=36% Similarity=0.613 Sum_probs=145.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCC--------eEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC-C
Q 025812 2 VVGVLALQGSFNEHIAALKRLGV--------KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-K 72 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~--------~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g-~ 72 (247)
.|+||+.+|.|.+..+.+++.-+ ++..+..++|+.++|+||+|||+++.|..+.+..++.+.+-.++.++ +
T Consensus 13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k 92 (226)
T KOG3210|consen 13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK 92 (226)
T ss_pred EEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc
Confidence 48999999999988888885422 34457788899999999999999988888877778889999999987 9
Q ss_pred cEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC
Q 025812 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~ 152 (247)
|++|.|+||.+|++.+++++. ...-|++++.+|+|+.+|++..||........+-... .+|+..|.+.|....+-+
T Consensus 93 ~~WGTCAGmI~LS~ql~nek~-~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi~~~---~~FpATFIRAPVie~ILD 168 (226)
T KOG3210|consen 93 VTWGTCAGMIYLSQQLSNEKK-LVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFIPHC---NDFPATFIRAPVIEEILD 168 (226)
T ss_pred cceeechhhhhhhhhhcCCcc-hhhhhhheeEEEeeccccchhhhheehhcccccccCc---ccCchhheechhHHHhcC
Confidence 999999999999999876432 3467899999999999999999986443322222111 225566778887766533
Q ss_pred CeEEEEEEeCCCCCCCCCCCC-cEEEEEeeCCEEEEeeCCCCCC-chHHHHHHHHH
Q 025812 153 DVDVLADYPVPSNKENAMPEK-KVIVAVRQGNLLGTAFHPELTA-DTRWHSYFLKM 206 (247)
Q Consensus 153 ~~~~~hs~~~~~~~~~~~~~~-~~~~~~~~~~i~gvQFHPE~s~-~~~i~~nfl~~ 206 (247)
...+...|..+ ..+. ..+++-+++|++++.||||++. +.+|.++|++.
T Consensus 169 ~I~V~~l~~~~------~nG~~~iVAa~Q~~~iL~TSFHPELa~~D~R~HdW~ire 218 (226)
T KOG3210|consen 169 PIHVQVLYKLD------GNGQELIVAAKQKNNILATSFHPELAENDIRFHDWFIRE 218 (226)
T ss_pred chhheEEEEec------CCCcEEEEEEeccCCEeeeecChhhhcccchHHHHHHHH
Confidence 33344444332 1223 3455556799999999999995 55899999875
No 29
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=1.3e-22 Score=170.40 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=111.7
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. +++++|+++|+++.++++.. ++ .++|+||++||+.+..+. ....+.++. ++.++|+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~Pi 75 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPI 75 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCE
Confidence 099999999999 68899999999999988653 23 257999999987654321 122445544 5679999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-- 152 (247)
||||+|+|+|+.+++ +++.+.+ . ..+||..+.. + ..++++.++++
T Consensus 76 LGIC~G~Qlla~~~G--------------G~v~~~~------------~-~~~G~~~~~~---~---~~~~lf~~l~~~~ 122 (191)
T PRK06774 76 LGVCLGHQALGQAFG--------------ARVVRAR------------Q-VMHGKTSAIC---H---SGQGVFRGLNQPL 122 (191)
T ss_pred EEECHHHHHHHHHhC--------------CEEEeCC------------c-ceecceEEEE---e---cCchhhcCCCCCc
Confidence 999999999999962 5665531 1 3346654321 1 24567777644
Q ss_pred CeEEEEEEeCC--C--CC----CCCCCC-C-cEEEEEeeC--CEEEEeeCCCCCCch---HHHHHHHH
Q 025812 153 DVDVLADYPVP--S--NK----ENAMPE-K-KVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 153 ~~~~~hs~~~~--~--~~----~~~~~~-~-~~~~~~~~~--~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
.++++|++.+. . .. +++.+. . ..+++++.. ++||+|||||+..+. +|++||++
T Consensus 123 ~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 123 TVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 46678888762 1 11 123322 1 345555654 899999999984443 69999985
No 30
>CHL00101 trpG anthranilate synthase component 2
Probab=99.89 E-value=2.1e-22 Score=169.07 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=109.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. +++++|+++|+++.+++... ++ ..+|+||++||.....+ ......+.++++.++|+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~Pi 75 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPI 75 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcE
Confidence 199999999998 58899999999999877432 23 46899999998654322 12344555667789999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~ 154 (247)
||||+|||+|+.+++ ++|.+.+ .+++||..... ...++++.++++.+
T Consensus 76 LGIClG~Qlla~~~G--------------g~V~~~~-------------~~~~g~~~~~~------~~~~~l~~~~~~~~ 122 (190)
T CHL00101 76 LGVCLGHQSIGYLFG--------------GKIIKAP-------------KPMHGKTSKIY------HNHDDLFQGLPNPF 122 (190)
T ss_pred EEEchhHHHHHHHhC--------------CEEEECC-------------CcccCceeeEe------eCCcHhhccCCCce
Confidence 999999999999862 6676642 12234332110 12456777776544
Q ss_pred --EEEEEEeCC----CCCC--CCCCCCcEEEEEe--eCC-EEEEeeCCCCCCch---HHHHHHHHH
Q 025812 155 --DVLADYPVP----SNKE--NAMPEKKVIVAVR--QGN-LLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 155 --~~~hs~~~~----~~~~--~~~~~~~~~~~~~--~~~-i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
+.+|++.+. ++.. .+......+++++ +.+ +||+|||||.+.+. .|++||++.
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 123 TATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred EEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 456777652 1111 1111123344554 445 99999999987543 699999874
No 31
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.89 E-value=2.5e-22 Score=169.30 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=111.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----C--CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~--l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. +++++|+++|.++.+++..+ + ..++|+||++||+.+..+. ....+.++. ++.++|+
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~-~~~~~Pv 75 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRY-FAGKIPI 75 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHH-hcCCCCE
Confidence 189999999998 58899999999999887653 1 2368999999987544321 123455554 3578999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~ 154 (247)
||||+|||+|+.+++ ++|.+.+ ..+.||... .. ...+++|.++++.+
T Consensus 76 LGIClG~Qlla~~lG--------------g~V~~~~-------------~~~~G~~~~----i~--~~~~~lf~~~~~~~ 122 (195)
T PRK07649 76 FGVCLGHQSIAQVFG--------------GEVVRAE-------------RLMHGKTSL----MH--HDGKTIFSDIPNPF 122 (195)
T ss_pred EEEcHHHHHHHHHcC--------------CEEeeCC-------------CcccCCeEE----EE--ECCChhhcCCCCCC
Confidence 999999999999962 5666542 122343210 00 02457888876654
Q ss_pred --EEEEEEeCC----CCCC--CCCCCCcEEEEEeeC--CEEEEeeCCCCCCch---HHHHHHHHHHHh
Q 025812 155 --DVLADYPVP----SNKE--NAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLKMMSE 209 (247)
Q Consensus 155 --~~~hs~~~~----~~~~--~~~~~~~~~~~~~~~--~i~gvQFHPE~s~~~---~i~~nfl~~~~~ 209 (247)
..+|++.+. +... .+......+++++.+ ++||+|||||...+. .+++||++.+..
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~~~ 190 (195)
T PRK07649 123 TATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKYSP 190 (195)
T ss_pred EEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHhHh
Confidence 446666542 1111 111122345676644 599999999965443 799999987653
No 32
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=6.7e-22 Score=169.00 Aligned_cols=172 Identities=20% Similarity=0.231 Sum_probs=111.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----C----CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~----l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|||.|+++.+.+. .+.++|++.|+++.+++... + +.++|+|||+||..+..+ . ....++++++.+.+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~-~---~~~~~~i~~~~~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPER-A---GASIDMVRACAAAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhh-c---chHHHHHHHHHhCC
Confidence 8999999987777 57789999999988876432 1 347999999998654321 1 12357889988899
Q ss_pred CcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC
Q 025812 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (247)
Q Consensus 72 ~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~ 151 (247)
+|+||||+|||+|+.+++ +++.+.+ .++.|+... .....+++|.+++
T Consensus 77 ~PiLGIC~G~Qlla~a~G--------------G~v~~~~-------------~~~~g~~~~------v~~~~~~~~~~~~ 123 (214)
T PRK07765 77 TPLLGVCLGHQAIGVAFG--------------ATVDRAP-------------ELLHGKTSS------VHHTGVGVLAGLP 123 (214)
T ss_pred CCEEEEccCHHHHHHHhC--------------CEEeeCC-------------CCccCceeE------EEECCCccccCCC
Confidence 999999999999999973 4555432 112232110 0001234555554
Q ss_pred CC--eEEEEEEeCCC----CCC--CCCCCCcEEEEEeeC--CEEEEeeCCCCCCc---hHHHHHHHHHHHh
Q 025812 152 PD--VDVLADYPVPS----NKE--NAMPEKKVIVAVRQG--NLLGTAFHPELTAD---TRWHSYFLKMMSE 209 (247)
Q Consensus 152 ~~--~~~~hs~~~~~----~~~--~~~~~~~~~~~~~~~--~i~gvQFHPE~s~~---~~i~~nfl~~~~~ 209 (247)
.. ++.+|++.+.+ +.. .+......+++++.+ ++||+|||||.+.+ ..+++||+..|.-
T Consensus 124 ~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~~ 194 (214)
T PRK07765 124 DPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCGW 194 (214)
T ss_pred CccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhcc
Confidence 43 34457776531 111 111122346676644 69999999997533 2799999998853
No 33
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.89 E-value=3.3e-22 Score=167.61 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=107.9
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. ++.++|+++|+++++++... ++ .++|+||++||+.+..+. ....+.+++ ++.++|+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~----~~~~~~l~~-~~~~~Pv 75 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEA----GISLELIRE-FAGKVPI 75 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHc----chHHHHHHH-hcCCCCE
Confidence 199999988888 68899999999998876532 22 248999998876443221 122445554 4678999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~ 154 (247)
||||+|||+|+.+++ +++.+.+ .++.||.... . ...++++.++++.+
T Consensus 76 LGIClG~Qlla~alG--------------g~v~~~~-------------~~~~g~~~~v----~--~~~~~l~~~~~~~~ 122 (189)
T PRK05670 76 LGVCLGHQAIGEAFG--------------GKVVRAK-------------EIMHGKTSPI----E--HDGSGIFAGLPNPF 122 (189)
T ss_pred EEECHHHHHHHHHhC--------------CEEEecC-------------CcccCceeEE----E--eCCCchhccCCCCc
Confidence 999999999999962 4555431 1223432110 0 02456666665443
Q ss_pred --EEEEEEeCCC----CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 155 --DVLADYPVPS----NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 155 --~~~hs~~~~~----~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
+..|++.+.+ ... .+......+++++ +.++||+|||||.+... .|++||+++++
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~~~ 189 (189)
T PRK05670 123 TVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLELAR 189 (189)
T ss_pred EEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHhhC
Confidence 4456666521 111 1111123566665 35799999999986432 69999998864
No 34
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=6.5e-22 Score=165.77 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=107.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
+|.|+++.++|. +++++|+++|+++.++++.+ ++ .++|+||++||+.+..+. ....+.++. ++.++|+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~Pi 75 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPI 75 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCE
Confidence 189999999988 68899999999999887653 22 358999998887544321 122445554 5679999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccC-CCCcceeeeeecCceeeecCCC
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-GGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~-~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
||||+|+|+|+.+++ +++.+.+ .++.|+.. +. ...+++|.+++..
T Consensus 76 LGIClG~Q~la~a~G--------------g~v~~~~-------------~~~~g~~~~v~-------~~~~~l~~~~~~~ 121 (187)
T PRK08007 76 LGVCLGHQAMAQAFG--------------GKVVRAA-------------KVMHGKTSPIT-------HNGEGVFRGLANP 121 (187)
T ss_pred EEECHHHHHHHHHcC--------------CEEEeCC-------------CcccCCceEEE-------ECCCCcccCCCCC
Confidence 999999999999962 5666542 12233211 10 0234566666543
Q ss_pred --eEEEEEEeCCC---CC-C--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHH
Q 025812 154 --VDVLADYPVPS---NK-E--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 154 --~~~~hs~~~~~---~~-~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
+..+|++.+.+ .+ . ++......+++++ ..+++|+|||||...+. .+++||++
T Consensus 122 ~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 122 LTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred cEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 45577776531 11 1 1111234455655 56799999999974433 69999985
No 35
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.89 E-value=2.7e-22 Score=174.07 Aligned_cols=170 Identities=18% Similarity=0.100 Sum_probs=109.9
Q ss_pred CEEEEEecC--CChHHHHHHHHhCCCeEEEECC------ccCCCCCCEEEECCCchh---HHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGEST---TMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~--G~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~lilpGG~~~---~~~~l~~~~~~~~~i~~~~~ 69 (247)
|||.||... +....+.++|++.|.++.++++ +++++++|++|++||..+ ..+++. .+.++|+++++
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~---~~~~~i~~~~~ 84 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIR---REIDWISVPLK 84 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHH---HHHHHHHHHHH
Confidence 789999763 4566888999999999888753 235778999999998532 234543 24688999999
Q ss_pred cCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeee
Q 025812 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (247)
Q Consensus 70 ~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~ 149 (247)
.++|+||||+|+|+|+++++ |+|.+++.| .+++||..+... ...+++..
T Consensus 85 ~~~PvLGIC~G~Qlla~alG--------------G~V~~~~~G-----------~~e~G~~~i~~~------~~~~~~~~ 133 (239)
T PRK06490 85 ENKPFLGICLGAQMLARHLG--------------ARVAPHPDG-----------RVEIGYYPLRPT------EAGRALMH 133 (239)
T ss_pred CCCCEEEECHhHHHHHHHcC--------------CEeecCCCC-----------CCccceEEeEEC------CCcccccC
Confidence 99999999999999999962 566654211 235666543311 12233333
Q ss_pred cCCCeEEEEEEeCC-CCCC--C-CCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHH
Q 025812 150 VGPDVDVLADYPVP-SNKE--N-AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 206 (247)
Q Consensus 150 l~~~~~~~hs~~~~-~~~~--~-~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~ 206 (247)
.+..++..|++... +..+ . ++..+...+...++++||+|||||++. +++++|+..
T Consensus 134 ~~~~~~~~H~d~~~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~~--~~~~~~i~~ 192 (239)
T PRK06490 134 WPEMVYHWHREGFDLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVTR--AMMHRWVVR 192 (239)
T ss_pred CCCEEEEECCccccCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCCH--HHHHHHHHh
Confidence 33344445555421 1122 1 222234443333558999999999995 677777753
No 36
>PLN02347 GMP synthetase
Probab=99.88 E-value=2.7e-22 Score=191.33 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=112.2
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCc---cCCC--CCCEEEECCCchhHHHHHHhhCCHH-HHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLF-PALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~---~~l~--~~d~lilpGG~~~~~~~l~~~~~~~-~~i~~~~~~g~Pi 74 (247)
+|+||++.+.+. ++.++|+++|+.+++++.. +++. ++|+||||||+.+..+. ....+. ..++.+.+.++|+
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~--~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVE--GAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCccccc--CCchhhHHHHHHHHhcCCcE
Confidence 699999977766 7889999999998887543 3343 68999999986433211 000112 2233334568999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC-
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~- 153 (247)
||||+|||+|+.+++ ++|.+.+ .+++||+.+... .++++|.+++..
T Consensus 90 LGIClG~QlLa~alG--------------G~V~~~~-------------~~e~G~~~v~i~------~~~~Lf~~l~~~~ 136 (536)
T PLN02347 90 LGICYGMQLIVQKLG--------------GEVKPGE-------------KQEYGRMEIRVV------CGSQLFGDLPSGE 136 (536)
T ss_pred EEECHHHHHHHHHcC--------------CEEEecC-------------CcccceEEEEEc------CCChhhhcCCCCc
Confidence 999999999999962 5665531 245677754311 256788877543
Q ss_pred ---eEEEEEEeCCC--CC----CCCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHH
Q 025812 154 ---VDVLADYPVPS--NK----ENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 154 ---~~~~hs~~~~~--~~----~~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
+++.|++.+.. .. +++.+ +. +++++ ++++||+|||||++.++ .|++||+..
T Consensus 137 ~~~v~~~Hsd~V~~lP~g~~vlA~s~~-~~-iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ 201 (536)
T PLN02347 137 TQTVWMSHGDEAVKLPEGFEVVAKSVQ-GA-VVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFD 201 (536)
T ss_pred eEEEEEEEEEEeeeCCCCCEEEEEeCC-Cc-EEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHH
Confidence 56678877532 11 12333 23 56665 67899999999998854 699999853
No 37
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.88 E-value=1.4e-21 Score=162.98 Aligned_cols=163 Identities=22% Similarity=0.271 Sum_probs=108.0
Q ss_pred EEEEecCCChH-HHHHHHHhCCCeEEEECCcc------CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 3 VGVLALQGSFN-EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 3 I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|.|+++.++|. .+.++|+++|+++.+++..+ ++.++|+||++||..+..+. ...+.+++++++++|+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence 57899989988 57799999999999886543 35789999998775433211 12455666677899999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccc-cCCCCcceeeeeecCceeeecCCC-
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPD- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw-~~~~~~~~~~~~~~~~l~~~l~~~- 153 (247)
|||+|||+|+.+++ +++.+.+ .+..|| ..+. ...++++.++++.
T Consensus 76 GIC~G~Qlla~~~G--------------g~v~~~~-------------~~~~g~~~~v~-------~~~~~~~~~~~~~~ 121 (184)
T cd01743 76 GVCLGHQAIAEAFG--------------GKVVRAP-------------EPMHGKTSEIH-------HDGSGLFKGLPQPF 121 (184)
T ss_pred EECHhHHHHHHHhC--------------CEEEeCC-------------CCCcCceeEEE-------ECCCccccCCCCCc
Confidence 99999999999962 5565532 122232 2111 1245677776544
Q ss_pred -eEEEEEEeCCCC--C--C--CCCCCCcEEEEEeeC--CEEEEeeCCCCCCch---HHHHHHH
Q 025812 154 -VDVLADYPVPSN--K--E--NAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFL 204 (247)
Q Consensus 154 -~~~~hs~~~~~~--~--~--~~~~~~~~~~~~~~~--~i~gvQFHPE~s~~~---~i~~nfl 204 (247)
++..|++.+... . . .+......+++++.+ ++||+|||||+...+ .+++||+
T Consensus 122 ~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 122 TVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 455677775321 1 1 122223467777754 499999999986543 6999984
No 38
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.88 E-value=7.5e-22 Score=166.48 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=103.2
Q ss_pred EEEEEecCCChHH-HHHHHHhCC-CeEEEECCc---cCC--CCCCEEEECCCchhHHH---HHHhhCCHHHHHHHHHHcC
Q 025812 2 VVGVLALQGSFNE-HIAALKRLG-VKGVEIRKP---DQL--QNVSSLIIPGGESTTMA---RLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 2 ~I~vl~~~G~~~~-~~~~L~~~G-~~v~~~~~~---~~l--~~~d~lilpGG~~~~~~---~l~~~~~~~~~i~~~~~~g 71 (247)
+|+|+++.+++.. +.++++++| ...+++... +++ .+.|++|++||+.+.++ ++. ...+.|++....+
T Consensus 3 ~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~---~~~~~i~~~~~p~ 79 (198)
T COG0518 3 KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLP---REKDLIKDAGVPG 79 (198)
T ss_pred EEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccch---hHHHHHHHhCCCC
Confidence 7999999999885 668999999 544443322 223 35699999999754322 232 3467788877778
Q ss_pred CcEEEEehhHHHHHHhhhcccCC-CcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec
Q 025812 72 KPVWGTCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (247)
Q Consensus 72 ~PilGIC~G~QlL~~~~~~~~~g-~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l 150 (247)
+|+||||+|||+|+.+++..+.. ...+.|+.+.++.. . ++++++++
T Consensus 80 ~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~-~--------------------------------~~~l~~gl 126 (198)
T COG0518 80 KPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTE-G--------------------------------DDPLFAGL 126 (198)
T ss_pred CCEEEEChhHHHHHHHhCCEEeccCCCccceEEEEEec-C--------------------------------ccccccCC
Confidence 88999999999999998532211 11334443333331 0 12344444
Q ss_pred CCCe-EEEEEEeCC----CCCC--C-CCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHH
Q 025812 151 GPDV-DVLADYPVP----SNKE--N-AMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 205 (247)
Q Consensus 151 ~~~~-~~~hs~~~~----~~~~--~-~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~ 205 (247)
+... .+.+|+.+. |..+ . ++..|.+++....+++||+|||||++... +|++||..
T Consensus 127 ~~~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~~~~~gvQFHpEv~~~~~~~~l~nf~~ 191 (198)
T COG0518 127 PDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYGKRAYGVQFHPEVTHEYGEALLENFAH 191 (198)
T ss_pred ccccCccccchhCccccCCCCCEEEecCCCChhhheecCCcEEEEeeeeEEeHHHHHHHHHHhhh
Confidence 3322 233333321 1111 0 12334544444446999999999999954 69999984
No 39
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.87 E-value=2.7e-21 Score=162.13 Aligned_cols=166 Identities=22% Similarity=0.197 Sum_probs=106.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CCC--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. ++++.|+++|+++.++++.. ++. ++|+|||+||+.+..+. . ...+.++++ ++++|+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~Pv 75 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPI 75 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCE
Confidence 199999999999 68899999999998876432 232 47999998886543221 1 125667666 679999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-- 152 (247)
||||+|||+|+.+++ ++|.+.+ +..+.+|..+.. ..++++.++++
T Consensus 76 LGIC~G~Qll~~~~G--------------G~v~~~~------------~~~~g~~~~v~~-------~~~~~~~~l~~~~ 122 (188)
T TIGR00566 76 LGVCLGHQAMGQAFG--------------GDVVRAN------------TVMHGKTSEIEH-------NGAGIFRGLFNPL 122 (188)
T ss_pred EEECHHHHHHHHHcC--------------CEEeeCC------------CccccceEEEEE-------CCCccccCCCCCc
Confidence 999999999999962 5665531 112222332210 13345555533
Q ss_pred CeEEEEEEeCC--CCC--C--CC-CCCCcEEEEEee--CCEEEEeeCCCCCCch---HHHHHHHH
Q 025812 153 DVDVLADYPVP--SNK--E--NA-MPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 153 ~~~~~hs~~~~--~~~--~--~~-~~~~~~~~~~~~--~~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
.+..+|++.+. ..+ . .+ +..+..+++++. .++||+|||||...+. .+++||++
T Consensus 123 ~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 123 TATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHh
Confidence 34557777652 111 1 11 122336667663 3799999999975543 69999985
No 40
>PLN02335 anthranilate synthase
Probab=99.87 E-value=3.7e-21 Score=165.29 Aligned_cols=178 Identities=19% Similarity=0.220 Sum_probs=111.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-C---C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-~---l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
+||+|+++.+.|. ++.++|+++|+++.+++... + + .++|+|||+||+.+..+. ....+.+++ ...++|
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~----~~~~~~~~~-~~~~~P 93 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS----GISLQTVLE-LGPLVP 93 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc----cchHHHHHH-hCCCCC
Confidence 3799999988887 68899999999999887542 1 2 357999998886544321 112334433 345799
Q ss_pred EEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC
Q 025812 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
+||||+|+|+|+.+++ +++.+.+. ...+-+|..+.... . .++++|.+++..
T Consensus 94 iLGIClG~QlLa~alG--------------g~v~~~~~-----------~~~~G~~~~v~~~~-~---~~~~Lf~~l~~~ 144 (222)
T PLN02335 94 LFGVCMGLQCIGEAFG--------------GKIVRSPF-----------GVMHGKSSPVHYDE-K---GEEGLFSGLPNP 144 (222)
T ss_pred EEEecHHHHHHHHHhC--------------CEEEeCCC-----------ccccCceeeeEECC-C---CCChhhhCCCCC
Confidence 9999999999999862 45554321 01111222211000 0 134677777654
Q ss_pred e--EEEEEEeCCCC----C-C--CCCCCCcEEEEEeeC---CEEEEeeCCCCCCch---HHHHHHHHHHHhccc
Q 025812 154 V--DVLADYPVPSN----K-E--NAMPEKKVIVAVRQG---NLLGTAFHPELTADT---RWHSYFLKMMSEVGE 212 (247)
Q Consensus 154 ~--~~~hs~~~~~~----~-~--~~~~~~~~~~~~~~~---~i~gvQFHPE~s~~~---~i~~nfl~~~~~~~~ 212 (247)
+ ..+|++.+.+. . . .+......+++++.. ++||+|||||..... .+++||++.+++.+-
T Consensus 145 ~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~~~~~ 218 (222)
T PLN02335 145 FTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKKES 218 (222)
T ss_pred CEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHHhhcc
Confidence 4 44566655321 1 1 111223446666643 499999999987643 699999998876543
No 41
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.87 E-value=8.2e-21 Score=161.59 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=61.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
-||+|+++.+.|. +++++|+++|++++++++.. ++ .++|+|||+||+.+..+.- ...+.++++. .++|+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~----~~~~li~~~~-~~~Pi 76 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG----NMMALIDRTL-GQIPL 76 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh----HHHHHHHHHh-CCCCE
Confidence 1799999865555 79999999999999887642 33 3679999988765443221 1234554443 58999
Q ss_pred EEEehhHHHHHHhhh
Q 025812 75 WGTCAGLIFLANKAV 89 (247)
Q Consensus 75 lGIC~G~QlL~~~~~ 89 (247)
||||+|+|+|+.+++
T Consensus 77 LGIClG~Qlla~alG 91 (208)
T PRK05637 77 LGICLGFQALLEHHG 91 (208)
T ss_pred EEEcHHHHHHHHHcC
Confidence 999999999999974
No 42
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.87 E-value=1.2e-21 Score=163.91 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=110.0
Q ss_pred EEEecCC-ChHHHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 4 GVLALQG-SFNEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 4 ~vl~~~G-~~~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
.|+++.. ...++.++|+++|.++++++... ++.++|+||++||..+..+ +. ...+.++++.+.++|+|
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~---~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IE---GLIELIREARERKIPIL 76 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HH---HHHHHHHHHHHTTSEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-cc---ccccccccccccceEEE
Confidence 4778754 45589999999999988876432 2678999999998654432 21 23677888888899999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~-- 153 (247)
|||+|||+|+.+++ ++|.+.+ +.++.||+.... ....++++.+.++.
T Consensus 77 GIC~G~Q~la~~~G--------------~~v~~~~------------~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~ 125 (192)
T PF00117_consen 77 GICLGHQILAHALG--------------GKVVPSP------------EKPHHGGNIPIS-----ETPEDPLFYGLPESFK 125 (192)
T ss_dssp EETHHHHHHHHHTT--------------HEEEEEE------------SEEEEEEEEEEE-----EEEEHGGGTTSTSEEE
T ss_pred EEeehhhhhHHhcC--------------Ccccccc------------cccccccccccc-----cccccccccccccccc
Confidence 99999999999973 3544431 134555543110 00113566666554
Q ss_pred eEEEEEEeCCC----CC-C----CCCCCCcEEEEEeeCC-EEEEeeCCCCCCch---HHHHHHHHH
Q 025812 154 VDVLADYPVPS----NK-E----NAMPEKKVIVAVRQGN-LLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 154 ~~~~hs~~~~~----~~-~----~~~~~~~~~~~~~~~~-i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
++..|++.+.+ +. . .+.+++...+....++ ++|+|||||++.+. .+++||+..
T Consensus 126 ~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 126 AYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred cccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCCCCcchhhhheeEe
Confidence 34567776543 11 1 2333344555555554 99999999998875 699999754
No 43
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.87 E-value=6.1e-21 Score=165.29 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=112.6
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEECCc------cCCCCCCEEEECCCchhH------HHHHHhhCCHHHHHHH
Q 025812 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT------MARLAEYHNLFPALRE 66 (247)
Q Consensus 1 m~I~vl~~~G--~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~lilpGG~~~~------~~~l~~~~~~~~~i~~ 66 (247)
|||.|+.... ....+..++++.|.++.++... .++.++|+||++||.... .+++.. ....++|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~-~~~~~~i~~ 79 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDS-KAEQRLINQ 79 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccch-HHHHHHHHH
Confidence 8999998643 2335678889999988765421 145689999999985432 122210 123578999
Q ss_pred HHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCce
Q 025812 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA 146 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l 146 (247)
+++.++|+||||+|+|+|+++++ ++|.+++ .+++||..++.+. .+ ..+|+
T Consensus 80 ~~~~~~PvlGIC~G~Qlla~alG--------------g~V~~~~-------------~~e~G~~~v~lt~-~g--~~d~l 129 (235)
T PRK08250 80 AIKAGKAVIGVCLGAQLIGEALG--------------AKYEHSP-------------EKEIGYFPITLTE-AG--LKDPL 129 (235)
T ss_pred HHHcCCCEEEEChhHHHHHHHhC--------------ceeccCC-------------CCceeEEEEEEcc-cc--ccCch
Confidence 99999999999999999999973 5555432 1356665433211 11 24577
Q ss_pred eeecCCCeEEEEEEeCC---CCCCC---CCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHH
Q 025812 147 VLDVGPDVDVLADYPVP---SNKEN---AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 207 (247)
Q Consensus 147 ~~~l~~~~~~~hs~~~~---~~~~~---~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~ 207 (247)
+..+++.+.+.|++.+. |..+. ++..|..++....+++||+|||||++. .++++|++..
T Consensus 130 ~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~~~--~~~~~~~~~~ 194 (235)
T PRK08250 130 LSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEFTV--EAVELLIAHS 194 (235)
T ss_pred hhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcCCH--HHHHHHHHhc
Confidence 77777777777766532 22221 233355555445678999999999987 4566666543
No 44
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.87 E-value=2.7e-21 Score=189.64 Aligned_cols=170 Identities=13% Similarity=0.162 Sum_probs=117.9
Q ss_pred CEEEEEecCC-ChHHHHHHHHhCCCeEEEECCcc--C---CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQG-SFNEHIAALKRLGVKGVEIRKPD--Q---LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G-~~~~~~~~L~~~G~~v~~~~~~~--~---l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
++|+|+++.. +..++.++|++.|+++.+++... + ..++|+|||+||..+..+ .+..+.|+++++.++|+
T Consensus 517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV 591 (717)
T ss_pred CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence 4799999854 55689999999999998886542 2 256899999776543322 13467888888899999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCccccc-CCCCcceeeeeecCceeeecCCC
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-EGGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~-~~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
||||+|||+|+.++ | ++|.+. +.|++||. .+.. ...+++|.++++.
T Consensus 592 LGICLG~QlLa~a~-----------G---G~V~~~-------------~~p~~G~~~~V~~------~~~~~Lf~~lp~~ 638 (717)
T TIGR01815 592 FGVCLGLQGMVEAF-----------G---GALDVL-------------PEPVHGKASRIRV------LGPDALFAGLPER 638 (717)
T ss_pred EEECHHHHHHhhhh-----------C---CEEEEC-------------CCCeeCcceEEEE------CCCChhhhcCCCC
Confidence 99999999999996 2 566553 35677753 2221 1246788888654
Q ss_pred --eEEEEEEeCCC----CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCC----Cc--hHHHHHHHHHHH
Q 025812 154 --VDVLADYPVPS----NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELT----AD--TRWHSYFLKMMS 208 (247)
Q Consensus 154 --~~~~hs~~~~~----~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s----~~--~~i~~nfl~~~~ 208 (247)
++++|||.+.. ... .+.+....+++++ ..++||+|||||.. +. ..|++||++.+.
T Consensus 639 ~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 639 LTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred CEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHh
Confidence 55678876421 111 1222234577776 46799999999982 22 269999999884
No 45
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.86 E-value=3e-21 Score=167.06 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=106.9
Q ss_pred CEEEEEecC--CChHHHHHHHHhCCCeEEEECCc------cCCCCCCEEEECCCchhH-----HHHHHhhCCHHHHHHHH
Q 025812 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREF 67 (247)
Q Consensus 1 m~I~vl~~~--G~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~lilpGG~~~~-----~~~l~~~~~~~~~i~~~ 67 (247)
|+|.|+... -+..++.++|++.|.++.+++.. .++.++|+||++||.... +.++. .+.+.|+++
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~---~~~~~i~~~ 79 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLA---PEIALLRQR 79 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHH---HHHHHHHHH
Confidence 369999863 35668899999999998887542 245679999999975322 23443 346889999
Q ss_pred HHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCcee
Q 025812 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (247)
Q Consensus 68 ~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~ 147 (247)
++.++|+||||+|+|+|+++++ ++|.+. ..+++||..+..+. .+ ..+|+.
T Consensus 80 ~~~~~PvlGIC~G~Qlla~alG--------------g~V~~~-------------~~~e~G~~~i~~t~-~g--~~~pl~ 129 (234)
T PRK07053 80 LAAGLPTLGICLGAQLIARALG--------------ARVYPG-------------GQKEIGWAPLTLTD-AG--RASPLR 129 (234)
T ss_pred HHCCCCEEEECccHHHHHHHcC--------------CcEecC-------------CCCeEeEEEEEEec-cc--cCChhh
Confidence 9999999999999999999973 344332 12345555432110 00 123442
Q ss_pred eecCCCeEEEEEEeC---CCCCCC---CCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHH
Q 025812 148 LDVGPDVDVLADYPV---PSNKEN---AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 205 (247)
Q Consensus 148 ~~l~~~~~~~hs~~~---~~~~~~---~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~ 205 (247)
++++.+.++|++.+ .|..+. ++..+..++....+++||+|||||++.+ +++.|+.
T Consensus 130 -~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~~~~--~~~~w~~ 190 (234)
T PRK07053 130 -HLGAGTPVLHWHGDTFDLPEGATLLASTPACRHQAFAWGNHVLALQFHPEARED--RFEAWLI 190 (234)
T ss_pred -cCCCcceEEEEeCCEEecCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccCCHH--HHHHHHH
Confidence 34444555554432 122221 2233444444445789999999999874 5666654
No 46
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.86 E-value=1.9e-21 Score=185.41 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=109.0
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCc---cCCCCC--CEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~---~~l~~~--d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
+|+||++.+++. .+.++|+++|+.+++++.. +++.++ |+||||||..+.++. +.....+..++.++|+|
T Consensus 5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~-----~~p~~~~~i~~~~~PvL 79 (511)
T PRK00074 5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEE-----GAPRADPEIFELGVPVL 79 (511)
T ss_pred EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccC-----CCccccHHHHhCCCCEE
Confidence 699999988777 5779999999988776432 345444 999999997654331 11122244556799999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~-- 153 (247)
|||+|||+|+.+++ ++|.+. ..++.||..+... .++++|.+++..
T Consensus 80 GIC~G~QlLa~~lG--------------G~V~~~-------------~~~e~G~~~i~i~------~~~~Lf~~l~~~~~ 126 (511)
T PRK00074 80 GICYGMQLMAHQLG--------------GKVERA-------------GKREYGRAELEVD------NDSPLFKGLPEEQD 126 (511)
T ss_pred EECHHHHHHHHHhC--------------CeEEec-------------CCcccceEEEEEc------CCChhhhcCCCceE
Confidence 99999999999962 455443 1234566543211 245677777544
Q ss_pred eEEEEEEeCCC--CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHH
Q 025812 154 VDVLADYPVPS--NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 154 ~~~~hs~~~~~--~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
++..|++.+.. ... .+......+++++ ++++||+|||||++.++ .|++||+.
T Consensus 127 v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~ 187 (511)
T PRK00074 127 VWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVF 187 (511)
T ss_pred EEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHH
Confidence 44567766532 111 1111123345554 57899999999998864 69999994
No 47
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.86 E-value=2.6e-20 Score=156.77 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-C---C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-~---l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
.|.|+++.++|. ++++.|+++|+++.+++..+ + + .++|+||+.||+.+..+. ....+.++. ++.++|+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~Pi 75 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPI 75 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCE
Confidence 199999999998 68899999999999887542 2 1 247899998886544321 122455554 5789999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC-
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~- 153 (247)
||||+|+|+|+.+++ ++|.+.+ .++.||... .. ...+++|.++++.
T Consensus 76 LGIClG~Qlia~a~G--------------g~v~~~~-------------~~~~G~~~~----~~--~~~~~l~~~~~~~~ 122 (193)
T PRK08857 76 LGVCLGHQAIAQVFG--------------GQVVRAR-------------QVMHGKTSP----IR--HTGRSVFKGLNNPL 122 (193)
T ss_pred EEEcHHHHHHHHHhC--------------CEEEeCC-------------CceeCceEE----EE--ECCCcccccCCCcc
Confidence 999999999999972 4555531 123344210 00 0234566666544
Q ss_pred -eEEEEEEeCC----CCC----CCCC--CC-CcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHH
Q 025812 154 -VDVLADYPVP----SNK----ENAM--PE-KKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 154 -~~~~hs~~~~----~~~----~~~~--~~-~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
+..+|++.+. +.. +++. .+ ...+++++ +.++||+|||||..... .|++||++.
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 123 TVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred EEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 3446776642 111 1122 11 24566655 44899999999987543 699999863
No 48
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.85 E-value=2e-20 Score=158.06 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=122.6
Q ss_pred ChHHHHHHHHhCCCeEEEECCc--cCCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 11 SFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~~~~~--~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
-|.+..++|+++|+++++++++ +++.++|+||||||.++. +++|.+++++.+.|++++++|+|++|||.|+|+|++.
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 3558999999999999999885 567779999999997653 6677655568899999999999999999999999999
Q ss_pred hhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceee-ec-CCCeEEEEEEeCCC-
Q 025812 88 AVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL-DV-GPDVDVLADYPVPS- 164 (247)
Q Consensus 88 ~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~-~l-~~~~~~~hs~~~~~- 164 (247)
+++..+...++||++|+++++.+ +. ++||+.+... .++++.. +. -.+++++++--...
T Consensus 92 ~~d~~g~~~~glGll~~~~~~~~------------~~-~~g~~~~~~~------~~~~~~~~g~~v~G~E~H~g~t~~~~ 152 (198)
T cd03130 92 LDDEEGQSYPMAGVLPGDARMTK------------RL-GLGYREAEAL------GDTLLGKKGTTLRGHEFHYSRLEPPP 152 (198)
T ss_pred hhccCCCEeccccccceeeEEcC------------CC-cccCEEEEee------cCccccCCCCEEEEEeccCcEeecCC
Confidence 97643335789999999998852 23 7888754310 1222211 10 02445554432211
Q ss_pred CC--C---CCCCC-CcEEEEEeeCCEEEEeeCCCCCCchHHHHHHH
Q 025812 165 NK--E---NAMPE-KKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 204 (247)
Q Consensus 165 ~~--~---~~~~~-~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl 204 (247)
.. . ....+ .....++.++|++|++.|-.+..++.++++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~dG~~~~nv~gtY~Hg~f~~n~~~~~~~~ 198 (198)
T cd03130 153 EPDFAATVRRGRGIDGGEDGYVYGNVLASYLHLHWASNPDLAERFV 198 (198)
T ss_pred CcceEEEeccCCCCCCcccEEEECCEEEEEeeeecccCHHHHHHhC
Confidence 11 1 01111 11235677799999999999988888888874
No 49
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.85 E-value=6.3e-21 Score=165.37 Aligned_cols=171 Identities=19% Similarity=0.164 Sum_probs=103.6
Q ss_pred CEEEEEecC----------CChHH-HHHHHHhCCCeEEEECCc-----cCCCCCCEEEECCCchhH---HHHHHhhCCHH
Q 025812 1 MVVGVLALQ----------GSFNE-HIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTT---MARLAEYHNLF 61 (247)
Q Consensus 1 m~I~vl~~~----------G~~~~-~~~~L~~~G~~v~~~~~~-----~~l~~~d~lilpGG~~~~---~~~l~~~~~~~ 61 (247)
-||+||..+ |++.+ +.+.|+..|.++.+++.. .++.++|+||++||..+. .+|+. .+.
T Consensus 2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~---~~~ 78 (237)
T PRK09065 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSE---RTA 78 (237)
T ss_pred CcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHH---HHH
Confidence 059999642 44554 334566678887765432 245789999999986432 34443 247
Q ss_pred HHHHHHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeee
Q 025812 62 PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVF 141 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~ 141 (247)
++|+++++.++|+||||+|+|+|+.+++ ++|.+++. -.+.||..++.+. .+
T Consensus 79 ~~i~~~~~~~~PvlGIC~G~Qlla~alG--------------g~V~~~~~------------g~e~G~~~v~~~~-~~-- 129 (237)
T PRK09065 79 DWLRQAAAAGMPLLGICYGHQLLAHALG--------------GEVGYNPA------------GRESGTVTVELHP-AA-- 129 (237)
T ss_pred HHHHHHHHCCCCEEEEChhHHHHHHHcC--------------CccccCCC------------CCccceEEEEEcc-cc--
Confidence 8899999999999999999999999973 44444321 1234444332110 00
Q ss_pred ecCceeeecCCCe--EEEEEEeCC--CCCC--CC-CCCCcEEEEEe-eCCEEEEeeCCCCCCchHHHHHHHHH
Q 025812 142 IRAPAVLDVGPDV--DVLADYPVP--SNKE--NA-MPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLKM 206 (247)
Q Consensus 142 ~~~~l~~~l~~~~--~~~hs~~~~--~~~~--~~-~~~~~~~~~~~-~~~i~gvQFHPE~s~~~~i~~nfl~~ 206 (247)
..+|+|.++++.+ +.+|++.+. +... .+ +..+. +++++ ++++||+|||||++. .+++.|+..
T Consensus 130 ~~~~l~~~~~~~~~v~~~H~d~v~~lp~~~~~la~s~~~~-iqa~~~~~~i~gvQfHPE~~~--~~~~~~~~~ 199 (237)
T PRK09065 130 ADDPLFAGLPAQFPAHLTHLQSVLRLPPGAVVLARSAQDP-HQAFRYGPHAWGVQFHPEFTA--HIMRAYLRA 199 (237)
T ss_pred ccChhhhcCCccCcEeeehhhhhhhCCCCCEEEEcCCCCC-eeEEEeCCCEEEEEeCCcCCH--HHHHHHHHh
Confidence 1356777666544 445666542 2221 11 12233 45555 457999999999976 456666653
No 50
>PRK05665 amidotransferase; Provisional
Probab=99.84 E-value=1.4e-19 Score=157.15 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=101.2
Q ss_pred CEEEEEecC----------CChHH-HHHHHHhCCC--eEEEEC-----CccCCCCCCEEEECCCchhH---HHHHHhhCC
Q 025812 1 MVVGVLALQ----------GSFNE-HIAALKRLGV--KGVEIR-----KPDQLQNVSSLIIPGGESTT---MARLAEYHN 59 (247)
Q Consensus 1 m~I~vl~~~----------G~~~~-~~~~L~~~G~--~v~~~~-----~~~~l~~~d~lilpGG~~~~---~~~l~~~~~ 59 (247)
|||+||..+ |+|.. +.+.|...+. ++.+++ .|.++.++|++|++||..+. .+|+. .
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~---~ 79 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQ---T 79 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHH---H
Confidence 799999753 45555 5566777774 344443 13356789999999985432 35553 3
Q ss_pred HHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceee
Q 025812 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRG 139 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~ 139 (247)
+.++|+++++.++|+||||+|+|+|+++++ |+|.+++.|. +.|+..+..
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlG--------------G~V~~~~~G~------------e~G~~~~~~----- 128 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLG--------------GKAERASQGW------------GVGIHRYQL----- 128 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhC--------------CEEEeCCCCc------------ccceEEEEe-----
Confidence 578899999999999999999999999973 5665543211 122211110
Q ss_pred eeecCceeeecCCCeEEEEEEeCC----CCCC--C-CCCCCcEEEEEeeCCEEEEeeCCCCCCch
Q 025812 140 VFIRAPAVLDVGPDVDVLADYPVP----SNKE--N-AMPEKKVIVAVRQGNLLGTAFHPELTADT 197 (247)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~hs~~~~----~~~~--~-~~~~~~~~~~~~~~~i~gvQFHPE~s~~~ 197 (247)
....+++...++.+.+++++.+. |..+ . ++..|..++....+++||+|||||++.+.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~ 192 (240)
T PRK05665 129 -AAHAPWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY 192 (240)
T ss_pred -cCCCccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH
Confidence 01234555555556655555431 2222 1 23335555555567899999999999863
No 51
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=5e-20 Score=175.89 Aligned_cols=175 Identities=18% Similarity=0.120 Sum_probs=111.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-------CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-------~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~ 70 (247)
|||.|+++.++|. +++++|+++|++++++++.. ++ .++|+|||+||+.+..+. +....+.+.+..
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~ 76 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG 76 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence 4999999999999 57899999999999887531 22 246799998876544221 222333444456
Q ss_pred CCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec
Q 025812 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (247)
Q Consensus 71 g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l 150 (247)
++|+||||+|||+|+.+++ ++|.+.+ .+.+|+.... .+ ..+++|.++
T Consensus 77 ~iPILGIClG~QlLa~a~G--------------G~V~~~~-------------~~~~G~~~~i---~~---~~~~lf~~~ 123 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYG--------------GYVGQAG-------------EILHGKASSI---EH---DGQAMFAGL 123 (531)
T ss_pred CCCEEEEcHHHHHHHHhcC--------------CEEEeCC-------------ceeeeeEEEE---ee---cCCccccCC
Confidence 9999999999999999973 4554431 1112221100 00 134566666
Q ss_pred CCCe--EEEEEEeCCC--CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHHHHhcccCc
Q 025812 151 GPDV--DVLADYPVPS--NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMSEVGEGT 214 (247)
Q Consensus 151 ~~~~--~~~hs~~~~~--~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~~~~~~~~~ 214 (247)
+..+ ..+|++.+.. ... .+. ....+++++ ..++||+|||||...++ .+++||++.|...++.+
T Consensus 124 ~~~~~v~~~Hs~~v~~lP~~l~vlA~-sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~ 197 (531)
T PRK09522 124 TNPLPVARYHSLVGSNIPAGLTINAH-FNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPT 197 (531)
T ss_pred CCCcEEEEehheecccCCCCcEEEEe-cCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCC
Confidence 5443 4467766532 211 111 123355554 47899999999976654 69999999987555444
No 52
>PRK13566 anthranilate synthase; Provisional
Probab=99.84 E-value=6.1e-20 Score=180.35 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=115.4
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEEEECCcc-----CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~-~~~~~~~L~~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|||+|+++... ...+.++|++.|+++++++... +..++|+||++||.....+ ....+.|+++++.++|+
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI 601 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence 68999998654 4478899999999999887643 2357899999776543221 23568888888999999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccc-cCCCCcceeeeeecCceeeecCCC
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw-~~~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
||||+|||+|+.+++ +++.+. ..+++|| ..+.. ...+++|.++++.
T Consensus 602 LGIClG~QlLa~alG--------------G~V~~~-------------~~~~~G~~~~V~v------~~~~~Lf~~lp~~ 648 (720)
T PRK13566 602 FGVCLGLQAIVEAFG--------------GELGQL-------------AYPMHGKPSRIRV------RGPGRLFSGLPEE 648 (720)
T ss_pred EEEehhHHHHHHHcC--------------CEEEEC-------------CCCccCCceEEEE------CCCCchhhcCCCC
Confidence 999999999999962 555543 2234443 22211 1234677777654
Q ss_pred --eEEEEEEeCCC----CCC--CCCCCCcEEEEEee--CCEEEEeeCCCCCC----ch--HHHHHHHHHHH
Q 025812 154 --VDVLADYPVPS----NKE--NAMPEKKVIVAVRQ--GNLLGTAFHPELTA----DT--RWHSYFLKMMS 208 (247)
Q Consensus 154 --~~~~hs~~~~~----~~~--~~~~~~~~~~~~~~--~~i~gvQFHPE~s~----~~--~i~~nfl~~~~ 208 (247)
++.+|++++.. ... ++......+++++. .++||+|||||... +. .|++||++.|.
T Consensus 649 ~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 649 FTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred CEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 45677765421 111 12222346777764 58999999999733 22 69999999874
No 53
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.83 E-value=7.1e-20 Score=157.82 Aligned_cols=87 Identities=30% Similarity=0.543 Sum_probs=68.4
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECCcc-CCCCCCEEEECCCchhH--H--HHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~-~l~~~d~lilpGG~~~~--~--~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|||+||+++|..+ ++.++|+++|+++.++...+ +++++|+||+|||+... . ..+.+...+.+.|+++.+.++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 8999999998764 68899999999988775443 47899999999986321 1 1122222356789999999999
Q ss_pred EEEEehhHHHHHHh
Q 025812 74 VWGTCAGLIFLANK 87 (247)
Q Consensus 74 ilGIC~G~QlL~~~ 87 (247)
++|||.|+|+|+.+
T Consensus 81 vlgIC~G~QlLa~~ 94 (227)
T TIGR01737 81 VLGICNGFQILVEA 94 (227)
T ss_pred EEEECHHHHHHHHc
Confidence 99999999999986
No 54
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.82 E-value=6.4e-20 Score=153.25 Aligned_cols=167 Identities=22% Similarity=0.184 Sum_probs=105.6
Q ss_pred EEEEEecCCC--hHHHHHHHHhCC---CeEEEECCc-----cCCCCCCEEEECCCchhH----HHHHHhhCCHHHHHHHH
Q 025812 2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT----MARLAEYHNLFPALREF 67 (247)
Q Consensus 2 ~I~vl~~~G~--~~~~~~~L~~~G---~~v~~~~~~-----~~l~~~d~lilpGG~~~~----~~~l~~~~~~~~~i~~~ 67 (247)
||+||..+-. ...+.++|+.+| .++++++.. .++.++|+||++||..+. .+++. .+.+.|+++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~---~~~~~i~~~ 77 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLK---KLKELIRQA 77 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHH---HHHHHHHHH
Confidence 5888876443 357788999999 577766533 246899999999985433 23332 357888999
Q ss_pred HHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCcee
Q 025812 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (247)
Q Consensus 68 ~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~ 147 (247)
+++++|+||||+|+|+|+.+++ +++.+++. -++.||..+.... .. ...+++
T Consensus 78 ~~~~~pilgiC~G~q~l~~~lG--------------G~v~~~~~------------~~~~g~~~v~~~~-~~--~~~~l~ 128 (188)
T cd01741 78 LAAGKPVLGICLGHQLLARALG--------------GKVGRNPK------------GWEIGWFPVTLTE-AG--KADPLF 128 (188)
T ss_pred HHCCCCEEEECccHHHHHHHhC--------------CEEecCCC------------cceeEEEEEEecc-cc--ccCchh
Confidence 9999999999999999999862 45555421 1244554432110 00 124556
Q ss_pred eecCCC--eEEEEEEeCCC--CCC--CC-CCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHH
Q 025812 148 LDVGPD--VDVLADYPVPS--NKE--NA-MPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 204 (247)
Q Consensus 148 ~~l~~~--~~~~hs~~~~~--~~~--~~-~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl 204 (247)
.++++. ++.+|++.+.. ... .+ +..+...+....++++|+||||| ..+++||+
T Consensus 129 ~~~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE----~~~~~~f~ 188 (188)
T cd01741 129 AGLPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE----ERLLRNFL 188 (188)
T ss_pred hcCCCcceEEEEeccChhhCCCCCEEeecCCCCCcceEEecCCEEEEccCch----HHHHhhhC
Confidence 555544 45567766542 111 11 12233333334579999999999 67888884
No 55
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.81 E-value=5.3e-19 Score=175.97 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=62.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEEEECCcc----C-------CCCCCEEEECCCc--hhHHHHHHhhCCHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGE--STTMARLAEYHNLFPALR 65 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~~~~~~~----~-------l~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~ 65 (247)
|+|.++++-++|. +++++|+++ |.+++++++.+ + +..+|+|||++|+ ++..+.+. -..+.|+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~G---i~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIG---ICLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHH---HHHHHHH
Confidence 7899999989988 688999998 99988887653 1 2468999997764 32222221 1244555
Q ss_pred HHHHcCCcEEEEehhHHHHHHhhh
Q 025812 66 EFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 66 ~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
++ .++||||||+|||+|+.+++
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~~G 180 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYVHG 180 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHhcC
Confidence 43 47999999999999999973
No 56
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.81 E-value=1.4e-18 Score=144.37 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=64.4
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEECCcc-----CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|+|+++.+.+ +++++|+++|+++++++... +..++|+||++||..+..+ .. ...+.+++++++++|+|||
T Consensus 1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~-~~---~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPAL-LD---EAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhH-hH---HHHHHHHHHHhCCCCEEEE
Confidence 6899997775 78999999999999876543 2357999999998643211 11 2367788999899999999
Q ss_pred ehhHHHHHHhhh
Q 025812 78 CAGLIFLANKAV 89 (247)
Q Consensus 78 C~G~QlL~~~~~ 89 (247)
|+|+|+|+.+++
T Consensus 76 C~G~Q~l~~~~G 87 (178)
T cd01744 76 CLGHQLLALALG 87 (178)
T ss_pred CHHHHHHHHHcC
Confidence 999999999973
No 57
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.80 E-value=5.9e-19 Score=151.33 Aligned_cols=98 Identities=33% Similarity=0.563 Sum_probs=76.4
Q ss_pred CEEEEEecCCChH--HHHHHHH-hCCCeEEEEC-CccCCCCCCEEEECCCchhH--H--HHHHhhCCHHHHHHHHHHcCC
Q 025812 1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIR-KPDQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~-~~G~~v~~~~-~~~~l~~~d~lilpGG~~~~--~--~~l~~~~~~~~~i~~~~~~g~ 72 (247)
|||+||.++|..+ ++.++|+ .+|+++..+. .+.+++++|+||+|||+... . ..+.....+.++|+++.++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 8999999999885 5789999 8999887664 44578899999999985421 1 112222345788999999999
Q ss_pred cEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeec
Q 025812 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF 110 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~ 110 (247)
|++|||.|+|+|+++ |++++++.++.
T Consensus 81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~ 106 (219)
T PRK03619 81 PVLGICNGFQILTEA------------GLLPGALTRNA 106 (219)
T ss_pred EEEEECHHHHHHHHc------------CCCCCeEEEcC
Confidence 999999999999986 66777777764
No 58
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.80 E-value=2.6e-18 Score=169.80 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=111.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-C--CeEEEECCcc-------CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-G--VKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G--~~v~~~~~~~-------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
|||+||++.++|. +++++|++. | ++++++++.. ++..+|+|||+||+...... . ....++++++
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~--~---~~~i~~~i~~ 80 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA--Q---DMGIISELWE 80 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch--h---hhHHHHHHHH
Confidence 6899999988888 788999997 3 5666665432 24579999998775432110 0 1223333333
Q ss_pred c----CCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCc
Q 025812 70 M----GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (247)
Q Consensus 70 ~----g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~ 145 (247)
. ++|+||||+|+|+|+.+++ +++.+.+ .+++||... +. ....+
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~G--------------G~v~~~~-------------~~~hG~~~~----v~--~~~~~ 127 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQG--------------ADISRLP-------------TPKHGQVYE----MH--TNDAA 127 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcC--------------CEEEECC-------------CCCcCeEEE----EE--ECCcc
Confidence 2 5999999999999999862 5555532 233444210 00 02345
Q ss_pred eeeecCC-CeEEEEEEeCCCC--C---C--CC-CCCCcEEEEEe--eCCEEEEeeCCCCCCc----hHHHHHHHHHHHhc
Q 025812 146 AVLDVGP-DVDVLADYPVPSN--K---E--NA-MPEKKVIVAVR--QGNLLGTAFHPELTAD----TRWHSYFLKMMSEV 210 (247)
Q Consensus 146 l~~~l~~-~~~~~hs~~~~~~--~---~--~~-~~~~~~~~~~~--~~~i~gvQFHPE~s~~----~~i~~nfl~~~~~~ 210 (247)
+|.+++. .+..+|++.+... + . ++ +..+..+++++ +.++||+|||||.... ..|++||++++..+
T Consensus 128 lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~ 207 (742)
T TIGR01823 128 IFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAFIN 207 (742)
T ss_pred ccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHHHh
Confidence 6666542 4567899876431 1 1 11 22234566654 6789999999998543 26999999999888
Q ss_pred ccCc
Q 025812 211 GEGT 214 (247)
Q Consensus 211 ~~~~ 214 (247)
.+.+
T Consensus 208 ~~~~ 211 (742)
T TIGR01823 208 NVKT 211 (742)
T ss_pred hhhc
Confidence 7554
No 59
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.80 E-value=3.4e-18 Score=155.72 Aligned_cols=162 Identities=18% Similarity=0.290 Sum_probs=101.7
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+|+|+++ |-..+++++|++.|+++++++... ++ .++|+|||+||+.+..+.. ...+.+++++++ +|+||
T Consensus 169 ~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----~~~~~i~~~~~~-~PvlG 242 (354)
T PRK12838 169 HVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----PYLPEIKKLISS-YPILG 242 (354)
T ss_pred EEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH----HHHHHHHHHhcC-CCEEE
Confidence 6899998 766789999999999999886432 23 3689999999875432211 235678888766 99999
Q ss_pred EehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe--
Q 025812 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV-- 154 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~-- 154 (247)
||+|+|+|+.+++ +++.+.+. .|.|.+ +|+........
T Consensus 243 IClG~QlLa~a~G--------------g~v~kl~~-------------gh~G~~-------------hpV~~~~~~~~~~ 282 (354)
T PRK12838 243 ICLGHQLIALALG--------------ADTEKLPF-------------GHRGAN-------------HPVIDLTTGRVWM 282 (354)
T ss_pred ECHHHHHHHHHhC--------------CEEecCCC-------------CccCCc-------------eEEEECCCCeEEE
Confidence 9999999999973 44444321 122211 01100000000
Q ss_pred -EEEEEEeCCCC----C--C-CC-CCCCcEEEEEe--eCCEEEEeeCCCCCCch----HHHHHHHHHHHh
Q 025812 155 -DVLADYPVPSN----K--E-NA-MPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMSE 209 (247)
Q Consensus 155 -~~~hs~~~~~~----~--~-~~-~~~~~~~~~~~--~~~i~gvQFHPE~s~~~----~i~~nfl~~~~~ 209 (247)
...|++.+... . . +. +..+..+++++ +.++||+|||||....+ .+|++|++++++
T Consensus 283 ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 283 TSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred eccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 11344443211 1 0 11 11234577776 45699999999986643 599999999864
No 60
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.80 E-value=2.6e-18 Score=156.74 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=63.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CCC--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+|+|+++ |.-.+++++|+++|+++++++... ++. .+|+|||+||+.+.. .+. ...+.++++++ ++|+||
T Consensus 175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG 248 (358)
T TIGR01368 175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG 248 (358)
T ss_pred EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence 6999998 777789999999999999886543 232 359999999864431 121 23567888876 999999
Q ss_pred EehhHHHHHHhhh
Q 025812 77 TCAGLIFLANKAV 89 (247)
Q Consensus 77 IC~G~QlL~~~~~ 89 (247)
||+|+|+|+.+++
T Consensus 249 IClG~QlLa~a~G 261 (358)
T TIGR01368 249 ICLGHQLLALAFG 261 (358)
T ss_pred ECHHHHHHHHHhC
Confidence 9999999999973
No 61
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.80 E-value=1.1e-18 Score=151.68 Aligned_cols=172 Identities=22% Similarity=0.239 Sum_probs=100.3
Q ss_pred CE-EEEEecCCC----hHHHHHHHHhCCCe---EEEECC------ccCCCCCCEEEECCCchhH-------HHHHHhhC-
Q 025812 1 MV-VGVLALQGS----FNEHIAALKRLGVK---GVEIRK------PDQLQNVSSLIIPGGESTT-------MARLAEYH- 58 (247)
Q Consensus 1 m~-I~vl~~~G~----~~~~~~~L~~~G~~---v~~~~~------~~~l~~~d~lilpGG~~~~-------~~~l~~~~- 58 (247)
|| |+||...-. -.++.+++++.|.. +++++. +.+++++|+||++||..+. .+|+....
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~ 80 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEA 80 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHH
Confidence 65 888886221 13567888888864 444321 1256789999999985321 34443211
Q ss_pred CHHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCccee
Q 025812 59 NLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFR 138 (247)
Q Consensus 59 ~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~ 138 (247)
.+.+.++.+++.++|+||||+|||+|+.+++ ++|.+. .| +++||..++.+. .
T Consensus 81 ~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~G--------------G~V~~~-~g------------~e~G~~~v~l~~-~ 132 (242)
T PRK07567 81 ELSGLLDEVVARDFPFLGACYGVGTLGHHQG--------------GVVDRT-YG------------EPVGAVTVSLTD-A 132 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEchhHHHHHHHcC--------------CEEecC-CC------------CcCccEEEEECC-c
Confidence 1234566666899999999999999999973 455441 11 234444332110 0
Q ss_pred eeeecCceeeecCCCeEEE--EEEeCC--CCCC--C-CCCCCcEEEEEe-eCCEEEEeeCCCCCCchHHHHHHHH
Q 025812 139 GVFIRAPAVLDVGPDVDVL--ADYPVP--SNKE--N-AMPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLK 205 (247)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~--hs~~~~--~~~~--~-~~~~~~~~~~~~-~~~i~gvQFHPE~s~~~~i~~nfl~ 205 (247)
+ ..+|+|..++..+.++ |++.+. +..+ . ++..+. +++++ .+++||+|||||++.+ ++..++.
T Consensus 133 g--~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~~vlA~s~~~~-vqa~~~~~~~~gvQfHPE~~~~--~~~~~~~ 202 (242)
T PRK07567 133 G--RADPLLAGLPDTFTAFVGHKEAVSALPPGAVLLATSPTCP-VQMFRVGENVYATQFHPELDAD--GLKTRID 202 (242)
T ss_pred c--CCChhhcCCCCceEEEeehhhhhhhCCCCCEEEEeCCCCC-EEEEEeCCCEEEEEeCCcCCHH--HHHHHHH
Confidence 0 1356777776666554 554432 2222 1 122233 45555 5689999999999874 3444443
No 62
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.79 E-value=8.2e-18 Score=154.33 Aligned_cols=83 Identities=14% Similarity=0.321 Sum_probs=63.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
+||+|+++ |--.+++++|+++|++++++++.. ++ .++|+|||+||+.+.. .+. .+.+.++++++.++|+|
T Consensus 193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~-~~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPS-AIH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChh-HHH---HHHHHHHHHHhCCCCEE
Confidence 47999998 555579999999999999886543 23 3689999988754331 111 23567777777789999
Q ss_pred EEehhHHHHHHhh
Q 025812 76 GTCAGLIFLANKA 88 (247)
Q Consensus 76 GIC~G~QlL~~~~ 88 (247)
|||+|||+|+.++
T Consensus 268 GIClGhQlLa~a~ 280 (382)
T CHL00197 268 GICMGHQILSLAL 280 (382)
T ss_pred EEcHHHHHHHHHh
Confidence 9999999999997
No 63
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.79 E-value=8.5e-19 Score=160.53 Aligned_cols=187 Identities=18% Similarity=0.289 Sum_probs=138.5
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCcc--CCC-CCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCc
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD--QLQ-NVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~--~l~-~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
||||-. +-. |.++++.|+++|++++.+++.. +++ ++|+|+||||+|+. .++|..++.+.+.|+++.+.|+|
T Consensus 247 rIAVA~-D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~p 325 (451)
T COG1797 247 RIAVAR-DAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKP 325 (451)
T ss_pred eEEEEe-cchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCc
Confidence 688877 343 4489999999999999999876 466 69999999999987 57788777789999999999999
Q ss_pred EEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC--
Q 025812 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-- 151 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~-- 151 (247)
++|.|.|+++|++.+++..+..++|+|++|+.+.+.. ++...|+...+.. .++++. ..+
T Consensus 326 iyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~------------Rl~~lGY~~~~~~------~d~~~~-~~G~~ 386 (451)
T COG1797 326 IYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTK------------RLQALGYREAEAV------DDTLLL-RAGEK 386 (451)
T ss_pred eEEecccceeehhheeccCCceeeeeeeeccchhhhh------------hhhccceeEEEec------CCcccc-cCCce
Confidence 9999999999999998876667899999999987752 2233454432210 122232 111
Q ss_pred -CCeEEEEEEeCCCC---CC-C---CCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 152 -PDVDVLADYPVPSN---KE-N---AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 152 -~~~~~~hs~~~~~~---~~-~---~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
.+.+|++|.-.... ++ . .........+++.+|++|++.|-++.+++.++++|++.|+
T Consensus 387 irGHEFHyS~~~~~~~~~~a~~~~~g~g~~~~~~G~~~gnv~asY~H~H~~s~~~~~~~~v~~~~ 451 (451)
T COG1797 387 IRGHEFHYSRLITEEDAEPAFRVRRGDGIDNGRDGYRSGNVLASYLHLHFASNPAFAARFVAAAR 451 (451)
T ss_pred eeeeeeeeeecccCCcCceeeeeecccCccccccceeeCCeEEEEEeeecccCHHHHHHHHHhhC
Confidence 24567777653221 11 1 1111124678899999999999999999999999998763
No 64
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.79 E-value=9.9e-18 Score=153.08 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=65.1
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
+||+|+++ |...+++++|+++|+++++++... ++ .++|+|||+||+.+..+ +. ...+.++++++.++|+|
T Consensus 178 ~~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~-~~---~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAA-LD---YAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHH-HH---HHHHHHHHHHHcCCeEE
Confidence 37999997 666789999999999999887543 23 26899999988643321 11 23678888888899999
Q ss_pred EEehhHHHHHHhh
Q 025812 76 GTCAGLIFLANKA 88 (247)
Q Consensus 76 GIC~G~QlL~~~~ 88 (247)
|||+|+|+|+.++
T Consensus 253 GIClG~QlLa~a~ 265 (360)
T PRK12564 253 GICLGHQLLALAL 265 (360)
T ss_pred EECHHHHHHHHHh
Confidence 9999999999997
No 65
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.78 E-value=3.1e-18 Score=144.27 Aligned_cols=106 Identities=25% Similarity=0.399 Sum_probs=87.9
Q ss_pred EEEEec--CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchh--HHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 3 VGVLAL--QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 3 I~vl~~--~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~--~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
|+|+.+ .||+.++.+++++.|+++++++..+++.++|+||||||... .+.+++ +..+.+.|++++++|+|+||||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence 467776 48999999999999999999998888889999999998632 234433 3468899999999999999999
Q ss_pred hhHHHHHHhhhcccCC----CcccccceeeEEEee
Q 025812 79 AGLIFLANKAVGQKLG----GQELVGGLDCTVHRN 109 (247)
Q Consensus 79 ~G~QlL~~~~~~~~~g----~~~~LG~l~g~v~~~ 109 (247)
+|+|+|++.+.+..+. ..+++|++|+++++.
T Consensus 80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~~ 114 (194)
T cd01750 80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEFG 114 (194)
T ss_pred HHHHHhhhhccCCCCcccCCCcccccccceEEEec
Confidence 9999999999654321 268999999999875
No 66
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.77 E-value=9.2e-18 Score=160.94 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred EEEEecCCChH-HHHHHHHhCCCe-EEEECCcc----CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 3 VGVLALQGSFN-EHIAALKRLGVK-GVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 3 I~vl~~~G~~~-~~~~~L~~~G~~-v~~~~~~~----~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|.|+++.++|. ++++.|+++|.+ +.++.+.. ++ .++|+||++||+.+..+. ....+.++. ++.++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~----~~~~~li~~-~~~~~Pv 76 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA----GISVEVIRH-FSGKVPI 76 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC----CccHHHHHH-hhcCCCE
Confidence 89999999988 688999999996 66654322 22 357999999987654321 112455554 4679999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC-
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~- 153 (247)
||||+|||+|+.+++ +++.+.+ .++.||.... . ...+++|.++++.
T Consensus 77 LGIClG~QlLa~a~G--------------g~V~~~~-------------~~~~G~~~~v----~--~~~~~lf~~~~~~~ 123 (534)
T PRK14607 77 LGVCLGHQAIGYAFG--------------GKIVHAK-------------RILHGKTSPI----D--HNGKGLFRGIPNPT 123 (534)
T ss_pred EEEcHHHHHHHHHcC--------------CeEecCC-------------ccccCCceeE----E--ECCCcchhcCCCCc
Confidence 999999999999962 4554431 1223432210 0 1234566666543
Q ss_pred -eEEEEEEeCC----CCCC--CCCCCCcEEEEEee--CCEEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 154 -VDVLADYPVP----SNKE--NAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 154 -~~~~hs~~~~----~~~~--~~~~~~~~~~~~~~--~~i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
++.+|++.+. +... .+......+++++. .++||+|||||...+. .|++||++.+.
T Consensus 124 ~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 124 VATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred EEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 3456776552 1111 11112234666664 3699999999986543 69999999775
No 67
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.76 E-value=2.6e-17 Score=147.04 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=107.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+|+++++ |--.++++.|.+.|+++++++... ++ .++|+|+|+-|+.+. +.+. ...+.|+++++..+|++|
T Consensus 181 ~Vv~iD~-GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~---~~i~~ik~l~~~~iPifG 255 (368)
T COG0505 181 HVVVIDF-GVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLD---YAIETIKELLGTKIPIFG 255 (368)
T ss_pred EEEEEEc-CccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHH---HHHHHHHHHhccCCCeEE
Confidence 5788886 777899999999999999987543 33 478999997765433 1221 236789999988889999
Q ss_pred EehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEE
Q 025812 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV 156 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~ 156 (247)
||+|||+|+.+++ +++.+.++ -|.|-| +|..+-....+++
T Consensus 256 ICLGHQllalA~G--------------a~T~KmkF-------------GHrG~N-------------hPV~dl~tgrv~I 295 (368)
T COG0505 256 ICLGHQLLALALG--------------AKTYKMKF-------------GHRGAN-------------HPVKDLDTGRVYI 295 (368)
T ss_pred EcHHHHHHHHhcC--------------Cceeeccc-------------CCCCCC-------------cCcccccCCeEEE
Confidence 9999999999963 44444332 222221 1111000111121
Q ss_pred ---EEEEeCCCCC--C----C-CCCCCcEEEEEe--eCCEEEEeeCCCCCCch----HHHHHHHHHHHhccc
Q 025812 157 ---LADYPVPSNK--E----N-AMPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMSEVGE 212 (247)
Q Consensus 157 ---~hs~~~~~~~--~----~-~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~----~i~~nfl~~~~~~~~ 212 (247)
-|.|.+.+++ . + .+-.+..+++++ ..+++.+|||||.++.+ .+|+.|++++++.+.
T Consensus 296 TSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 296 TSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred EecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 2444443221 0 0 011223445554 55799999999999976 599999999987654
No 68
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.75 E-value=5.4e-18 Score=149.87 Aligned_cols=76 Identities=22% Similarity=0.414 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCeEEEECCc---cC----CCCCCEEEECCCchhH--HHHHHhhCCHHHHHHHHHHcC--CcEEEEehhHH
Q 025812 14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMG--KPVWGTCAGLI 82 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---~~----l~~~d~lilpGG~~~~--~~~l~~~~~~~~~i~~~~~~g--~PilGIC~G~Q 82 (247)
++++++++.|++++++..+ ++ ++.+|+|++|||..+. ..+++..+.+.+...+..++| +|+||||+|+|
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q 103 (273)
T cd01747 24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFE 103 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH
Confidence 6889999999997765433 22 5789999999985322 222322112333333333334 89999999999
Q ss_pred HHHHhhh
Q 025812 83 FLANKAV 89 (247)
Q Consensus 83 lL~~~~~ 89 (247)
+|+.+++
T Consensus 104 lL~~~~g 110 (273)
T cd01747 104 LLTYLTS 110 (273)
T ss_pred HHHHHhC
Confidence 9999874
No 69
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.75 E-value=5.8e-17 Score=152.56 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=124.9
Q ss_pred EEEEEecCC-C--hHHHHHHHHhCCCeEEEECCc--cCCCCCCEEEECCCchhHH-HHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQG-S--FNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G-~--~~~~~~~L~~~G~~v~~~~~~--~~l~~~d~lilpGG~~~~~-~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
||||...+- | |.+.++.|++.|++++.+++. ++++++|+|+||||+++.+ ..+..++.+.+.|++++++|+|+|
T Consensus 246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~ 325 (449)
T TIGR00379 246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY 325 (449)
T ss_pred EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence 688888542 2 247789999999999999885 4678999999999998764 355555678999999999999999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceee-ec-CCC
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL-DV-GPD 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~-~l-~~~ 153 (247)
|||.|+|+|++.+.+.. +..+|+|++|+++++.+. . ...|+...+. . .+.++.. +. -.+
T Consensus 326 g~CgG~~~L~~~i~~~~-g~~~~~Gllp~~t~~~~~---~---------~~~gy~~~~~---~---~~~~~~~~g~~~~G 386 (449)
T TIGR00379 326 GECGGLMYLSQSLDNFE-GQIFMVGMLPTAATMTGR---V---------QGLGYVQAEV---V---NDCLILWQGEKFRG 386 (449)
T ss_pred EEcHHHHHHHhhhcCCC-CceeceeeeeeEEEEcCC---c---------ccccceEEEE---e---cCccccCCCCEEEE
Confidence 99999999999997643 334999999999987531 1 1112111000 0 0111110 00 012
Q ss_pred eEEEEEEeCC-CCCC---C--CCCCC-cEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 154 VDVLADYPVP-SNKE---N--AMPEK-KVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 154 ~~~~hs~~~~-~~~~---~--~~~~~-~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
++|++|.... +.+. . ...+. ....++.++|++|++.|-.+..++.+.++|++.|+
T Consensus 387 hEfH~~~~~~~~~~~~~~~~~~g~g~~~~~dG~~~~nv~gsY~H~~~~~np~~~~~~l~~~~ 448 (449)
T TIGR00379 387 HEFHYSRMTKLPNAQFAYRVERGRGIIDQLDGICVGSVLASYLHLHAGSVPKFAAAFVAFAK 448 (449)
T ss_pred EecCCccCcCCCCcceEEEeccCCCCCCceeEEEeCCEEEEeeeeeCCcCHHHHHHHHHHhh
Confidence 3443332110 0000 0 01111 11257778999999999999888899999998875
No 70
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.74 E-value=1.3e-17 Score=139.91 Aligned_cols=139 Identities=25% Similarity=0.373 Sum_probs=90.8
Q ss_pred HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECCCchhHHH--------HH-----HhhCCHHHHHHHHHHcCCc
Q 025812 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMA--------RL-----AEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpGG~~~~~~--------~l-----~~~~~~~~~i~~~~~~g~P 73 (247)
+++++|+++|+++++++... .+..+|+||||||.+.... ++ .......+.++++++.++|
T Consensus 23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P 102 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP 102 (189)
T ss_pred HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence 68899999999998887653 2468999999998532111 00 0000125678888889999
Q ss_pred EEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC
Q 025812 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
+||||+|+|+|+.+++ +++.+.+ .+. .| ++..+..++++
T Consensus 103 ilgiC~G~Q~l~~~~G--------------g~v~~~~------------~v~--~~-------------H~~~v~~~~~~ 141 (189)
T cd01745 103 ILGICRGMQLLNVALG--------------GTLYQDI------------RVN--SL-------------HHQAIKRLADG 141 (189)
T ss_pred EEEEcchHHHHHHHhC--------------CeEEcCC------------cee--ch-------------HHHHHhhcCCC
Confidence 9999999999999972 4554321 000 01 11112234556
Q ss_pred eEEEEEEeCCCCCCCCCCCCcEEEEEee---CCEEEEeeCCCCCCc--h---HHHHHHH
Q 025812 154 VDVLADYPVPSNKENAMPEKKVIVAVRQ---GNLLGTAFHPELTAD--T---RWHSYFL 204 (247)
Q Consensus 154 ~~~~hs~~~~~~~~~~~~~~~~~~~~~~---~~i~gvQFHPE~s~~--~---~i~~nfl 204 (247)
+.++++.. ...+++++. .+++|+|||||.+.. . .+|++|+
T Consensus 142 ~~vla~~~-----------d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 142 LRVEARAP-----------DGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred CEEEEECC-----------CCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 67766532 234566654 489999999999775 2 6888884
No 71
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.74 E-value=2.4e-17 Score=139.30 Aligned_cols=98 Identities=31% Similarity=0.512 Sum_probs=78.3
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECCcc-CCC-CCCEEEECCCchh--H--HHHHHhhCCHHHHHHHHHHcCC
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGEST--T--MARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~-~l~-~~d~lilpGG~~~--~--~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
||||||.++|+.+ +...+++++|++++.+.-.+ .+. ++|+|++|||++. . ..+++....+.+.+++++++|+
T Consensus 3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~ 82 (231)
T COG0047 3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK 82 (231)
T ss_pred ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence 7999999999877 67899999999888665433 456 7999999998642 1 1233333456789999999999
Q ss_pred cEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeec
Q 025812 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF 110 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~ 110 (247)
|+||||.|+|+|..+ |++|+..++|.
T Consensus 83 ~vLGICNGfQiL~e~------------gLlPGal~~N~ 108 (231)
T COG0047 83 PVLGICNGFQILSEA------------GLLPGALTRNE 108 (231)
T ss_pred eEEEEcchhHHHHHc------------CcCCcceecCC
Confidence 999999999999954 78888888874
No 72
>PRK00784 cobyric acid synthase; Provisional
Probab=99.73 E-value=1.1e-16 Score=152.20 Aligned_cols=181 Identities=19% Similarity=0.252 Sum_probs=122.3
Q ss_pred EEEEEecCC--ChHHHHHHHHh-CCCeEEEECCccCCCCCCEEEECCCchhHHH-HHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 2 VVGVLALQG--SFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 2 ~I~vl~~~G--~~~~~~~~L~~-~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~-~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
||||..++- || +.+++|++ .|++++++++++++.++|+||||||+++... .+.+++++.+.|++++++|+|+|||
T Consensus 253 ~i~v~~~~~a~~f-~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~ 331 (488)
T PRK00784 253 RIAVIRLPRISNF-TDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGI 331 (488)
T ss_pred EEEEEeCCCcCCc-cChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEE
Confidence 799999653 45 67788987 9999999999888899999999999765422 2334567899999999999999999
Q ss_pred ehhHHHHHHhhhcccC-----CCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC
Q 025812 78 CAGLIFLANKAVGQKL-----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~-----g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~ 152 (247)
|+|+|+|++.+.+..+ +..+|+|++++++++.+. + ..|..... +. .....+ .
T Consensus 332 C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~~~~--~-----------~~g~~~~~---~~---~~g~~~----~ 388 (488)
T PRK00784 332 CGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVFEPE--K-----------TLRQVTGL---LL---GSGAPV----S 388 (488)
T ss_pred CHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEecCc--e-----------EEccEEEE---Ec---CCCceE----E
Confidence 9999999999964322 224899999999987531 0 11111000 00 000001 1
Q ss_pred CeEEEEEEeCC-CC--CC-CCCCCCcEEEEEee--CCEEEEeeCCCCCCchHHHHHHHHHHHh
Q 025812 153 DVDVLADYPVP-SN--KE-NAMPEKKVIVAVRQ--GNLLGTAFHPELTADTRWHSYFLKMMSE 209 (247)
Q Consensus 153 ~~~~~hs~~~~-~~--~~-~~~~~~~~~~~~~~--~~i~gvQFHPE~s~~~~i~~nfl~~~~~ 209 (247)
+++|++|.... .. +. ....+ . ..++.. +|++|++.|..+.. +.+.++|++.|+.
T Consensus 389 GhEfH~s~~~~~~~~~~~~~~~~g-~-~~G~~~~~~nv~atY~H~~~~n-p~~~~~~l~~~~~ 448 (488)
T PRK00784 389 GYEIHMGRTTGPALARPFLRLDDG-R-PDGAVSADGRVFGTYLHGLFDN-DAFRRALLNWLGA 448 (488)
T ss_pred EEEecCcEeeCCCCCcCcEEecCC-C-cCceEecCCCEEEEeeeeccCC-HHHHHHHHHHHHH
Confidence 34554443211 11 10 00001 1 255666 99999999998865 8999999999975
No 73
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.72 E-value=1.8e-16 Score=149.30 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=124.8
Q ss_pred EEEEEecCC---ChHHHHHHHHhCCCeEEEECCc--cCCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQG---SFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G---~~~~~~~~L~~~G~~v~~~~~~--~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
||||...+- .|.+.++.|++.|++++.+++. +++.++|+||||||+++. ...+..+..+.+.|++++++|+|++
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~ 326 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY 326 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence 688888652 2346789999999999999863 458899999999998764 2445556678899999999999999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceee-ec-CCC
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL-DV-GPD 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~-~l-~~~ 153 (247)
|||.|+|+|++.+.+..+...+++|++|.++++.+.. ...|+..... . .+.++.. +. -.+
T Consensus 327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~~~~~------------~~~g~~~~~~---~---~~~~~~~~g~~i~G 388 (451)
T PRK01077 327 AECGGLMYLGESLEDADGERHPMVGLLPGEASMTKRL------------QALGYREAEA---L---EDTLLGKAGERLRG 388 (451)
T ss_pred EEcHHHHHHHhhhcCCCCCeeecccccceeEEEcCCc------------ccccceEEEe---e---cCCcCCCCCCEEEE
Confidence 9999999999999775444568999999998775310 0111110000 0 0011100 00 012
Q ss_pred eEEEEEEeCCC--CCC---CCCCCCc-EEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHh
Q 025812 154 VDVLADYPVPS--NKE---NAMPEKK-VIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 209 (247)
Q Consensus 154 ~~~~hs~~~~~--~~~---~~~~~~~-~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~ 209 (247)
++++++..... .+. ....+.. ...++.++|++|++.|..+..++.+.++|++.|+.
T Consensus 389 ~E~H~g~~~~~~~~~~~~~~~~~g~~~~~dG~~~~nv~gtY~H~~f~~n~~~~~~~l~~~~~ 450 (451)
T PRK01077 389 HEFHYSTLETPEEAPLYRVRDADGRPLGEEGYRRGNVLASYLHLHFASNPDAAARFLAACRR 450 (451)
T ss_pred ECCCceEeeCCCCCccEEEEeCCCCCCcCCeEEeCCEEEEEeEeecccCHHHHHHHHHHHhh
Confidence 34444332110 010 0001110 12466679999999999988788999999998864
No 74
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.72 E-value=1.7e-16 Score=146.29 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=62.4
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+|+++++ |+..++++.|+++|+++++++... ++ .++|+|||+||+.+.. .+. ...+.+++++ .++|+||
T Consensus 242 ~IvviD~-G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~---~~ie~ik~l~-~~iPIlG 315 (415)
T PLN02771 242 HVIAYDF-GIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVP---YAVETVKELL-GKVPVFG 315 (415)
T ss_pred EEEEECC-ChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-Hhh---HHHHHHHHHH-hCCCEEE
Confidence 6888886 888999999999999999987543 22 3689999988864331 111 1355666665 4899999
Q ss_pred EehhHHHHHHhh
Q 025812 77 TCAGLIFLANKA 88 (247)
Q Consensus 77 IC~G~QlL~~~~ 88 (247)
||+|||+|+.++
T Consensus 316 ICLGhQlLa~Al 327 (415)
T PLN02771 316 ICMGHQLLGQAL 327 (415)
T ss_pred EcHHHHHHHHhc
Confidence 999999999997
No 75
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.70 E-value=4.2e-16 Score=145.50 Aligned_cols=181 Identities=20% Similarity=0.188 Sum_probs=120.8
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECC--ccCCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~--~~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
||||-. +-. |.+.++.|+++ ++++.+++ ++++.++|+|+||||+++. .++|.++ ...+.|++++++|+|+
T Consensus 235 ~iavA~-D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n-~~~~~i~~~~~~G~pi 311 (433)
T PRK13896 235 TVAVAR-DAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADS-PALDELADRAADGLPV 311 (433)
T ss_pred eEEEEE-cCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhC-CcHHHHHHHHHCCCcE
Confidence 678776 333 44888999999 99999998 4457899999999999875 3566654 3459999999999999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceee-ec-CC
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL-DV-GP 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~-~l-~~ 152 (247)
+|||.|+|+|++.+.+..+...+|+|++|+++++.+. ....|+...+.. .++++.. +. -.
T Consensus 312 ~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m~~r------------~~~lGy~~~~~~------~~~~~~~~G~~i~ 373 (433)
T PRK13896 312 LGECGGLMALAESLTTTDGDTHEMAGVLPADVTMQDR------------YQALDHVELRAT------DDTLTAGAGETLR 373 (433)
T ss_pred EEEehHHHHhhccccCCCCCEecccceeeEEEEEccc------------eeEEEeEEEEEc------cCccccCCCCeEE
Confidence 9999999999999976544457999999999987531 112232211100 0111110 00 02
Q ss_pred CeEEEEEEeC-CCCCC---C--CCCCC--cEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHH
Q 025812 153 DVDVLADYPV-PSNKE---N--AMPEK--KVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 206 (247)
Q Consensus 153 ~~~~~hs~~~-~~~~~---~--~~~~~--~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~ 206 (247)
+++|++|... +.... . ...+. .+ .++.++|++|++.|..+..+ ++++|++.
T Consensus 374 GhEfHys~~~~~~~~~~~~~~~~g~g~~~~~-dG~~~~nv~asY~H~hf~~~--~~~~f~~~ 432 (433)
T PRK13896 374 GHEFHYSSATVGSDARFAFDVERGDGIDGEH-DGLTEYRTLGTYAHVHPESG--AFDRFLEA 432 (433)
T ss_pred EEeeeCeEEECCCCCceEEEeccCCCCCCcc-cEEEECCEEEEehhhcCCch--HHHHHHhh
Confidence 4555555422 11111 0 01111 12 67778999999999999775 88888764
No 76
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.70 E-value=2.6e-16 Score=138.05 Aligned_cols=85 Identities=33% Similarity=0.569 Sum_probs=66.1
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECCc------cCCCCCCEEEECCCch--hHH-------HHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGES--TTM-------ARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~------~~l~~~d~lilpGG~~--~~~-------~~l~~~~~~~~~ 63 (247)
|||+||.++|..+ +..++|+++|+++.++... .+++++|+|++|||+. +.. ..+. ..+.+.
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~--~~l~~~ 81 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK--AVLRKD 81 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH--HHHHHH
Confidence 6999999999765 6789999999998876531 2477899999999852 111 1221 123478
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHh
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
|++++++++|+||||.|+|+|+++
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHHC
Confidence 999999999999999999999985
No 77
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.69 E-value=4.6e-16 Score=136.29 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCeEEEECCc----cC----CCCCCEEEECCCchhH----H------HHHHhhC--CHHHHHHHHHHcCCc
Q 025812 14 EHIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT----M------ARLAEYH--NLFPALREFVKMGKP 73 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~----~~----l~~~d~lilpGG~~~~----~------~~l~~~~--~~~~~i~~~~~~g~P 73 (247)
.++++++.+|..++++... +. ++.+|+||++||..+. + .+....+ ...++|+.++++++|
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~P 109 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIP 109 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCC
Confidence 4778999999887776632 11 3569999999974211 1 0000001 124688888999999
Q ss_pred EEEEehhHHHHHHhhh
Q 025812 74 VWGTCAGLIFLANKAV 89 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~ 89 (247)
+||||+|+|+|+.+++
T Consensus 110 ILGICrG~Qllnva~G 125 (254)
T PRK11366 110 IFAICRGLQELVVATG 125 (254)
T ss_pred EEEECHhHHHHHHHhC
Confidence 9999999999999973
No 78
>PRK06186 hypothetical protein; Validated
Probab=99.66 E-value=1.3e-16 Score=136.82 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=60.5
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC------eEEEECCc-----cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G~------~v~~~~~~-----~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~ 66 (247)
+||++. ...+|.|+.++|+.+|. ++.+++.. ..|+++|+|++|||+..- -. .+.+..++.
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r--g~---~Gki~ai~~ 77 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR--ND---DGALTAIRF 77 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc--cH---hHHHHHHHH
Confidence 677776 25789999999999864 33444432 247789999999998632 11 245788899
Q ss_pred HHHcCCcEEEEehhHHHHHHhh
Q 025812 67 FVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~~ 88 (247)
+.++++|+||||+|||++.-.+
T Consensus 78 Are~~iP~LGIClGmQ~avIe~ 99 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEY 99 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHH
Confidence 9999999999999999855443
No 79
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=129.29 Aligned_cols=176 Identities=17% Similarity=0.272 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCeEEEECCc---cC----CCCCCEEEECCCch---hHH--------HHHHhhCCH--HHHHHHHHHcCCc
Q 025812 14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGES---TTM--------ARLAEYHNL--FPALREFVKMGKP 73 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---~~----l~~~d~lilpGG~~---~~~--------~~l~~~~~~--~~~i~~~~~~g~P 73 (247)
.++++...+|.-+.++... ++ ++..|+||++||.+ ..+ .....+++. ..+||+++++++|
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iP 109 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIP 109 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCC
Confidence 5677777788776666522 22 46789999999831 111 001111232 4689999999999
Q ss_pred EEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec-CC
Q 025812 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GP 152 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l-~~ 152 (247)
+||||.|+|+|..+++... ...+...++...+.. +. .++..-+. ++ ...+..+..+ ++
T Consensus 110 ILgICRG~QllNVa~GGtL---~q~i~~~~~~~~H~~----------~~-~~~~~~H~-----V~--i~~~s~La~i~g~ 168 (243)
T COG2071 110 ILGICRGLQLLNVALGGTL---YQDISEQPGHIDHRQ----------PN-PVHIESHE-----VH--IEPGSKLAKILGE 168 (243)
T ss_pred EEEEccchHHHHHHhcCee---ehhhhcccccccccC----------CC-CcccceeE-----EE--ecCCccHHHhcCc
Confidence 9999999999999984211 111111111111100 00 00000000 11 0122222222 32
Q ss_pred CeEEEEEEeCCCC----CC---CCCCCCcEEEEEe---eCCEEEEeeCCCCCCch-----HHHHHHHHHHHhc
Q 025812 153 DVDVLADYPVPSN----KE---NAMPEKKVIVAVR---QGNLLGTAFHPELTADT-----RWHSYFLKMMSEV 210 (247)
Q Consensus 153 ~~~~~hs~~~~~~----~~---~~~~~~~~~~~~~---~~~i~gvQFHPE~s~~~-----~i~~nfl~~~~~~ 210 (247)
.-..++|++.... +. ++...++.+.|++ +..++|+|||||+..+. .||++|++.|+.+
T Consensus 169 ~~~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 169 SEFMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred cceeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 2144677765321 10 1222245566665 35799999999976643 5999999998765
No 80
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.63 E-value=9e-15 Score=117.82 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=105.8
Q ss_pred EEEEecCCChH-HHHHHH-HhCCCeEEEECCcc----CC--CCCCEEEE-CC-CchhHHHHHHhhCCH-HHHHHHHHHcC
Q 025812 3 VGVLALQGSFN-EHIAAL-KRLGVKGVEIRKPD----QL--QNVSSLII-PG-GESTTMARLAEYHNL-FPALREFVKMG 71 (247)
Q Consensus 3 I~vl~~~G~~~-~~~~~L-~~~G~~v~~~~~~~----~l--~~~d~lil-pG-G~~~~~~~l~~~~~~-~~~i~~~~~~g 71 (247)
|.++++-.+|. ++.++| -+.|+.+.++++++ ++ .+.+.|++ || |.+.. .+. .+.|+++ ...
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~D-------sGIs~~~i~~f-~~~ 92 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQD-------SGISLQTVLEL-GPL 92 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCcc-------ccchHHHHHHh-CCC
Confidence 67788777777 778888 67799999998875 23 36777777 66 65531 222 4556554 467
Q ss_pred CcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecC
Q 025812 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (247)
Q Consensus 72 ~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~ 151 (247)
+|+||+|.|.|+++++++ +++.+.+++ +- +.+..++.+-+- ....+|++++
T Consensus 93 iP~fGvCMGlQCi~e~fG--------------Gkv~~a~~~--i~-HGK~S~i~~D~~------------~~~G~f~g~~ 143 (223)
T KOG0026|consen 93 VPLFGVCMGLQCIGEAFG--------------GKIVRSPFG--VM-HGKSSMVHYDEK------------GEEGLFSGLS 143 (223)
T ss_pred CceeeeehhhhhhhhhhC--------------cEEeccCcc--ee-eccccccccCCc------------cccccccCCC
Confidence 999999999999999973 344443210 00 001111211110 1235677776
Q ss_pred CC--eEEEEEEeCCCC--C-----CCCCCCCcEEEEEeeC---CEEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 152 PD--VDVLADYPVPSN--K-----ENAMPEKKVIVAVRQG---NLLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 152 ~~--~~~~hs~~~~~~--~-----~~~~~~~~~~~~~~~~---~i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
.+ +.++||.....+ + .++...++.+++.|.+ ++-|+|||||.--+. .+++||++...
T Consensus 144 q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~ 215 (223)
T KOG0026|consen 144 NPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVE 215 (223)
T ss_pred CCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhcc
Confidence 65 456888874321 1 1233345677887743 488999999954432 69999998764
No 81
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.62 E-value=4.6e-15 Score=139.95 Aligned_cols=97 Identities=26% Similarity=0.436 Sum_probs=70.4
Q ss_pred CEEEEEecCCChHHHHHHHHhCCC---eEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGV---KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~---~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|||+||+.+|.+. +++.+|. +++.+++++++.++|+||||||.......+. ..+.+.|+++ |+|+|||
T Consensus 1 m~iGvlal~sv~~----al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGI 71 (476)
T PRK06278 1 MEIGLLDIKGSLP----CFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGI 71 (476)
T ss_pred CEEEEEehhhHHH----HHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEE
Confidence 8999999877664 4666654 4444788889999999999998532222221 2445556555 9999999
Q ss_pred ehhHHHHHHhhhcccC----CCcccccceeeEE
Q 025812 78 CAGLIFLANKAVGQKL----GGQELVGGLDCTV 106 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~----g~~~~LG~l~g~v 106 (247)
|+|||+|++.+.+... +..++||++|++.
T Consensus 72 CgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~ 104 (476)
T PRK06278 72 CSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEF 104 (476)
T ss_pred cHHHHhcccccccCcccccccccCccceeeeee
Confidence 9999999999865322 2367999999874
No 82
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.60 E-value=1.2e-14 Score=137.46 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=62.8
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCCe------EEEECCc--------cCCCCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLGVK------GVEIRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G~~------v~~~~~~--------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
+||++. ...+|.|+.++|+.+|+. +.++..+ +.+.++|+||+|||+.+. .. .+..+.
T Consensus 290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~--~~---~g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER--GI---EGKILA 364 (533)
T ss_pred EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc--cc---ccHHHH
Confidence 678776 256889999999999752 3333322 246789999999997642 11 245778
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHhhh
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
++.+.++++|+||||+|||+|+.++.
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~G 390 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFA 390 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhc
Confidence 88888899999999999999999874
No 83
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=99.58 E-value=1.9e-14 Score=117.43 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=64.4
Q ss_pred cCCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhh-----cccCCCcccccceeeEE
Q 025812 33 DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV 106 (247)
Q Consensus 33 ~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~-----~~~~g~~~~LG~l~g~v 106 (247)
+.++++|+||||||+++. ...+.++..+.+.|++++++|+||+|||.|+|+|++.+. +..+...+++|++|+++
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 457899999999998865 344555678999999999999999999999999999997 33223478999999999
Q ss_pred Eee
Q 025812 107 HRN 109 (247)
Q Consensus 107 ~~~ 109 (247)
++.
T Consensus 83 ~~~ 85 (158)
T PF07685_consen 83 TME 85 (158)
T ss_pred EEc
Confidence 875
No 84
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.57 E-value=4.2e-14 Score=134.02 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=112.1
Q ss_pred EEEEEecCC--ChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhH--HHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 2 ~I~vl~~~G--~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~--~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
+|||..++- ||. ..+.|+..- .+.+.+.++++.++|+||||||+++. +.+++ ++++.+.|++++++|+|+|||
T Consensus 249 ~Iav~~~~~~~nf~-~~~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~-~~~~~~~i~~~~~~G~pvlgi 325 (475)
T TIGR00313 249 RIGVVRLPRISNFT-DFEPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALK-QSGFAEEILDFAKEGGIVIGI 325 (475)
T ss_pred EEEEEcCCcccCcc-ChHHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHH-hcChHHHHHHHHHcCCcEEEE
Confidence 789988654 444 557777762 44445555678899999999998654 33443 467899999999999999999
Q ss_pred ehhHHHHHHhhhccc-----CCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec-C
Q 025812 78 CAGLIFLANKAVGQK-----LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-G 151 (247)
Q Consensus 78 C~G~QlL~~~~~~~~-----~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l-~ 151 (247)
|.|||+|++.+.+.. .+..+++|++|+++++.+. + ..|....+ ...+. .+. -
T Consensus 326 CgG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~~~~--~-----------~~g~~~~~--------~~~~~-~g~~~ 383 (475)
T TIGR00313 326 CGGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYFGED--K-----------ITKQSQGR--------VEGNN-RGETV 383 (475)
T ss_pred cHHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEEcCC--c-----------EEEEEEEE--------EecCC-CCCeE
Confidence 999999999986532 2246899999999887531 0 01211000 00000 000 0
Q ss_pred CCeEEEEEEeCCCC-C-CC-CCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHh
Q 025812 152 PDVDVLADYPVPSN-K-EN-AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 209 (247)
Q Consensus 152 ~~~~~~hs~~~~~~-~-~~-~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~ 209 (247)
.+++++++.-.... + .. ..++. ....+|++|++.|. +..++.+.+.|++.++.
T Consensus 384 ~G~E~H~g~t~~~~~pl~~~~~~G~----~~~~g~v~GtYlHg-l~~n~~~~~~~l~~~~~ 439 (475)
T TIGR00313 384 KGYEIHEGFTRSKEKPLFKIERFGN----CGNDGNAWGTYLHG-LFENYEFRRYIINLLRK 439 (475)
T ss_pred EEEeeeceEECCCCcCceeccCCCc----cCCCCCEEEEeeee-ccCCHHHHHHHHHHHHH
Confidence 23445444321100 0 00 00111 01247999999999 66677899999998875
No 85
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.56 E-value=2.2e-14 Score=124.49 Aligned_cols=85 Identities=27% Similarity=0.471 Sum_probs=65.5
Q ss_pred EEEEecCCChH--HHHHHHHhCCCeEEEECCcc------CCCCCCEEEECCCchh--HHH--HHHhhCC-HHHHHHHHHH
Q 025812 3 VGVLALQGSFN--EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGEST--TMA--RLAEYHN-LFPALREFVK 69 (247)
Q Consensus 3 I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~------~l~~~d~lilpGG~~~--~~~--~l~~~~~-~~~~i~~~~~ 69 (247)
|+||.++|+.+ ++.++|++.|+++++++..+ +++++|+||||||+.. ... .....+. +.+.|+++.+
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~ 80 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE 80 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence 68999999766 78999999999988775432 4678999999998532 111 0001122 5788999999
Q ss_pred cCCcEEEEehhHHHHHHh
Q 025812 70 MGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 70 ~g~PilGIC~G~QlL~~~ 87 (247)
+++|+||||.|+|+|+++
T Consensus 81 ~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 81 RGGLVLGICNGFQILVEL 98 (238)
T ss_pred CCCeEEEECcHHHHHHHc
Confidence 999999999999999986
No 86
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.55 E-value=8.7e-14 Score=131.55 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=61.3
Q ss_pred EEEEEec----CCChHHHHHHHHhCCC----eEE--EECCcc-------CCCCCCEEEECCCchhHHHHHHhhCCHHHHH
Q 025812 2 VVGVLAL----QGSFNEHIAALKRLGV----KGV--EIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~----~G~~~~~~~~L~~~G~----~v~--~~~~~~-------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i 64 (247)
+||++.- ..+|.++.++|+.+|+ ++. ++..++ .+.++|+|++|||+.+.. . .+..+.+
T Consensus 291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai 365 (525)
T TIGR00337 291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI 365 (525)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence 5777762 3578899999999997 222 233221 256799999999975421 1 2456778
Q ss_pred HHHHHcCCcEEEEehhHHHHHHhhh
Q 025812 65 REFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 65 ~~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
+.+.+.++|+||||+|||+|+.++.
T Consensus 366 ~~a~e~~iP~LGIClG~Qll~i~~g 390 (525)
T TIGR00337 366 KYARENNIPFLGICLGMQLAVIEFA 390 (525)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHHHH
Confidence 8888899999999999999998874
No 87
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.54 E-value=4.8e-14 Score=120.79 Aligned_cols=76 Identities=22% Similarity=0.438 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECCCc-hh-----------HHHHHHhhCCH--HHHHHHHHHcCC
Q 025812 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGE-ST-----------TMARLAEYHNL--FPALREFVKMGK 72 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpGG~-~~-----------~~~~l~~~~~~--~~~i~~~~~~g~ 72 (247)
+++++++++|+.++++.... -++.+|+|+||||. +- ........++. ..+++.+.++++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~ 107 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK 107 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999886552 15789999999986 20 00111111122 356777777899
Q ss_pred cEEEEehhHHHHHHhhh
Q 025812 73 PVWGTCAGLIFLANKAV 89 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~ 89 (247)
|+||||.|||+|..+++
T Consensus 108 PilGICrG~Q~lnv~~G 124 (217)
T PF07722_consen 108 PILGICRGMQLLNVAFG 124 (217)
T ss_dssp -EEEETHHHHHHHHHCC
T ss_pred CEEEEcHHHHHHHHHhC
Confidence 99999999999999874
No 88
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.53 E-value=6.8e-14 Score=122.60 Aligned_cols=87 Identities=33% Similarity=0.474 Sum_probs=62.2
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECC------ccCCCCCCEEEECCCch--hH------H-HHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGES--TT------M-ARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~------~~~l~~~d~lilpGG~~--~~------~-~~l~~~~~~~~~ 63 (247)
.||+||.++|+.+ +...+|+..|+++..+.. +.+++++|+|+||||+. +. + ..+..+..+.+.
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 3899999999876 688999999999887632 24689999999999853 11 1 122222467899
Q ss_pred HHHHHHc-CCcEEEEehhHHHHHHh
Q 025812 64 LREFVKM-GKPVWGTCAGLIFLANK 87 (247)
Q Consensus 64 i~~~~~~-g~PilGIC~G~QlL~~~ 87 (247)
|++++++ |+++||||-|+|+|.+.
T Consensus 82 i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 82 IREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHHHHhcCCCeEEEEchHhHHHHHh
Confidence 9999998 99999999999999965
No 89
>PLN02327 CTP synthase
Probab=99.50 E-value=2.2e-13 Score=129.18 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=60.3
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC------eEEEECCc------------------cCCCCCCEEEECCCchhHHHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G~------~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~~ 53 (247)
+||++. ...+|.|+.++|+.+|+ ++.++... +.+.++|+|++|||+.+. .
T Consensus 299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~--~ 376 (557)
T PLN02327 299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDR--G 376 (557)
T ss_pred EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCc--c
Confidence 677776 25678999999998874 33344321 126789999999997532 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhh
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
. .+....++.+.+.++|+||||+|||+++..+.
T Consensus 377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefa 409 (557)
T PLN02327 377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFA 409 (557)
T ss_pred c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHH
Confidence 1 23466777777899999999999999998873
No 90
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.49 E-value=2.3e-13 Score=125.96 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=59.8
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC------eEEEECCcc-------CCCC-CCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKPD-------QLQN-VSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G~------~v~~~~~~~-------~l~~-~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
+||++. ...+|.|+.++|+.+|+ ++.++...+ .+.. +|+|++|||+..- -. .+.+..
T Consensus 290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R--G~---eGkI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR--GV---EGKIAA 364 (533)
T ss_pred EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC--ch---HHHHHH
Confidence 577765 36789999999999985 334454321 1333 8999999998631 11 134677
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
++-+.++++|+||||+|||+..-.+
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~ 389 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEF 389 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHH
Confidence 8888889999999999999988655
No 91
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.47 E-value=8.5e-14 Score=127.21 Aligned_cols=83 Identities=23% Similarity=0.449 Sum_probs=58.8
Q ss_pred EEEEEecCCChHHHH-HHHHhCCCeEEEECC--c-cCC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRK--P-DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~-~~L~~~G~~v~~~~~--~-~~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
+|+||++..+|..++ +.+|++-+...+++- + ..+ -.+.++||+||+.+.++.-+ ..+...| ++-++|+|
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dA--P~~dp~i---f~~~vpvL 92 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDA--PSFDPAI---FELGVPVL 92 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcC--CCCChhH---hccCCcce
Confidence 699999988999765 789998876555432 2 233 36789999999765543211 2233333 34589999
Q ss_pred EEehhHHHHHHhhh
Q 025812 76 GTCAGLIFLANKAV 89 (247)
Q Consensus 76 GIC~G~QlL~~~~~ 89 (247)
|||+|||+|+...+
T Consensus 93 GICYGmQ~i~~~~G 106 (552)
T KOG1622|consen 93 GICYGMQLINKLNG 106 (552)
T ss_pred eehhHHHHHHHHhC
Confidence 99999999999864
No 92
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.45 E-value=1.7e-12 Score=112.52 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=58.0
Q ss_pred EEEEEec----CCChHHHHHHHHhC----CCeEEE--ECCc--------cCCCCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 2 VVGVLAL----QGSFNEHIAALKRL----GVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~----~G~~~~~~~~L~~~----G~~v~~--~~~~--------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
+||++.- ..+|.++.++|+.. +.++.+ +..+ +.+.++|+||++||+... .+ .+..+.
T Consensus 2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~---~~~~~~ 76 (235)
T cd01746 2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GV---EGKILA 76 (235)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--ch---hhHHHH
Confidence 6777652 24566777777664 344443 3321 235789999999986432 12 134677
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHhhhc
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~~~~ 90 (247)
++.+.+.++|+||||+|+|+|+.+++.
T Consensus 77 i~~~~~~~~PvlGIClG~Q~l~~~~g~ 103 (235)
T cd01746 77 IKYARENNIPFLGICLGMQLAVIEFAR 103 (235)
T ss_pred HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence 888888999999999999999998853
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.43 E-value=5.4e-12 Score=123.62 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=62.4
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCccCC--CCCCEEEECCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l--~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
||++++ -|-..+.++.|...|+++.++....++ .++|+|+|..|+ |+..+.+ .+.+++.++.++|++||
T Consensus 174 ~I~aiD-cG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~------v~~vr~lL~~~~PvfGI 246 (1435)
T KOG0370|consen 174 RILAID-CGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLL------VQNVRELLESNVPVFGI 246 (1435)
T ss_pred EEEEcc-cCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHH------HHHHHHHHhCCCCeEEE
Confidence 466666 366778899999999999998765544 489999998864 4444433 45667777778999999
Q ss_pred ehhHHHHHHhh
Q 025812 78 CAGLIFLANKA 88 (247)
Q Consensus 78 C~G~QlL~~~~ 88 (247)
|+|||+|+.+.
T Consensus 247 ClGHQllA~Aa 257 (1435)
T KOG0370|consen 247 CLGHQLLALAA 257 (1435)
T ss_pred ehhhHHHHHhh
Confidence 99999999997
No 94
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.7e-12 Score=107.95 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=62.0
Q ss_pred EEEEEec----------CCChHH-HHHHHHhCCCeEEEE---C----CccCCCCCCEEEECCCchh---HHHHHHhhCCH
Q 025812 2 VVGVLAL----------QGSFNE-HIAALKRLGVKGVEI---R----KPDQLQNVSSLIIPGGEST---TMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~----------~G~~~~-~~~~L~~~G~~v~~~---~----~~~~l~~~d~lilpGG~~~---~~~~l~~~~~~ 60 (247)
|||++.. -|+|.+ .+..|.+-|.....+ + ..+|++++|+++|+|+..+ ..+|+.+ +
T Consensus 6 r~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~K---L 82 (245)
T KOG3179|consen 6 RIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKK---L 82 (245)
T ss_pred eEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHH---H
Confidence 5777653 255665 457788877654432 2 2347999999999997432 2467653 6
Q ss_pred HHHHHHHHHcCCcEEEEehhHHHHHHhhhc
Q 025812 61 FPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~QlL~~~~~~ 90 (247)
...+++.....++++|||+|||+++++.+.
T Consensus 83 cs~~kkld~mkkkvlGICFGHQiiara~Gg 112 (245)
T KOG3179|consen 83 CSFVKKLDFMKKKVLGICFGHQIIARAKGG 112 (245)
T ss_pred HHHHHHHHhhccceEEEeccHHHHHHhhCC
Confidence 777888878889999999999999999754
No 95
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.37 E-value=3.3e-11 Score=107.59 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCCCEEEECCCchh-----HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccC--CCcccccceeeEEEe
Q 025812 36 QNVSSLIIPGGEST-----TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL--GGQELVGGLDCTVHR 108 (247)
Q Consensus 36 ~~~d~lilpGG~~~-----~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~--g~~~~LG~l~g~v~~ 108 (247)
.++|++||+|+.-+ ..++..+-..+.++++ +..+|+||||.|+|+++.++.+..+ .+.++.|++.-++..
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~ 174 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLD 174 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcC
Confidence 47999999998533 1121211112334444 3589999999999999999843110 111233322211100
Q ss_pred eccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEEeCC--------CCCC--C-CCCCCcEEE
Q 025812 109 NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVP--------SNKE--N-AMPEKKVIV 177 (247)
Q Consensus 109 ~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~~~--------~~~~--~-~~~~~~~~~ 177 (247)
..+|++.++++.+..-||.... +... . .+..++..+
T Consensus 175 ---------------------------------~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~ 221 (302)
T PRK05368 175 ---------------------------------PHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYL 221 (302)
T ss_pred ---------------------------------CCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEE
Confidence 1356666666666666665321 1111 1 222344444
Q ss_pred EE-eeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 178 AV-RQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 178 ~~-~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
.. ++++++++|+|||+..+ .+.+...+.+.
T Consensus 222 ~~~~~~r~~~vQgHPEYd~~-tL~~EY~RD~~ 252 (302)
T PRK05368 222 FASKDKREVFVTGHPEYDAD-TLAQEYFRDLG 252 (302)
T ss_pred EEeCCCCEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 43 35679999999999975 35555555543
No 96
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.31 E-value=3.3e-11 Score=101.35 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHhCCCeEEEEC--Ccc--CCCCCCEEEECCCchhHHHHHHhh-CCHHHHHHHHHHcCCcEEEEehhHHH
Q 025812 9 QGSFNEHIAALKRLGVKGVEIR--KPD--QLQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 9 ~G~~~~~~~~L~~~G~~v~~~~--~~~--~l~~~d~lilpGG~~~~~~~l~~~-~~~~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.||..-+.+..+++|+++.++. -.+ +.+++|.+++.||.+.+.+-..+. ....+.|+++++.|+|+|+||.|.|+
T Consensus 20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql 99 (250)
T COG3442 20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL 99 (250)
T ss_pred CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh
Confidence 4777788899999998877643 222 336899999999976543222221 22357899999999999999999999
Q ss_pred HHHhhhcccCCCcccccceeeEEE
Q 025812 84 LANKAVGQKLGGQELVGGLDCTVH 107 (247)
Q Consensus 84 L~~~~~~~~~g~~~~LG~l~g~v~ 107 (247)
|+++++...+....+||+++....
T Consensus 100 LG~yY~~a~G~ri~GlGiLd~~T~ 123 (250)
T COG3442 100 LGQYYETASGTRIDGLGILDHYTE 123 (250)
T ss_pred ccceeecCCCcEeecccceeeeec
Confidence 999998766566789999987665
No 97
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.5e-11 Score=110.86 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=97.5
Q ss_pred EEEEEecCCChH-HHHHHHHhC-CCeEE-EECCc----c---C---CCCCCEEEE-CC-CchhHHHHHHhhCCH-HHHHH
Q 025812 2 VVGVLALQGSFN-EHIAALKRL-GVKGV-EIRKP----D---Q---LQNVSSLII-PG-GESTTMARLAEYHNL-FPALR 65 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~-G~~v~-~~~~~----~---~---l~~~d~lil-pG-G~~~~~~~l~~~~~~-~~~i~ 65 (247)
++..++.-.+|+ +++++|... |...+ ++... + + ...+|.|++ || |.|...+.. +. .+.+.
T Consensus 16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~----gI~~rl~~ 91 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADI----GICLRLLL 91 (767)
T ss_pred eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHH----HHHHHHHH
Confidence 467777667777 778888876 44433 33322 1 2 245999999 66 555222221 11 22222
Q ss_pred HHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCc
Q 025812 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (247)
Q Consensus 66 ~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~ 145 (247)
+. +.+|+||||+|+|.|+-+- | +.|.+.+ .|.+|-.. . .+ .+++-
T Consensus 92 ~~--~~iPilGICLGfQal~l~h-----------G---A~v~~~n-------------~p~HGrvs--~--i~--~~~~~ 136 (767)
T KOG1224|consen 92 EC--RDIPILGICLGFQALGLVH-----------G---AHVVHAN-------------EPVHGRVS--G--IE--HDGNI 136 (767)
T ss_pred hc--CCCceeeeehhhHhHhhhc-----------c---cceecCC-------------Ccccceee--e--EE--ecCcE
Confidence 22 4799999999999999763 1 4444321 12222110 0 00 02344
Q ss_pred eeeecC----C--CeEEEEEEeCCCCC------CCCCCC-C-cEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHH
Q 025812 146 AVLDVG----P--DVDVLADYPVPSNK------ENAMPE-K-KVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 146 l~~~l~----~--~~~~~hs~~~~~~~------~~~~~~-~-~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
+|.+++ . +..++||.++.+.+ .++.+. + ...+.+. +.+-||+|||||.-... .+++||+..
T Consensus 137 ~f~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~l 216 (767)
T KOG1224|consen 137 LFSGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLDL 216 (767)
T ss_pred EEccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHHh
Confidence 555653 2 34568999875432 122222 2 3555554 56799999999976653 799999987
Q ss_pred HHhcc
Q 025812 207 MSEVG 211 (247)
Q Consensus 207 ~~~~~ 211 (247)
.-.+-
T Consensus 217 t~~~n 221 (767)
T KOG1224|consen 217 TVNYN 221 (767)
T ss_pred hccCc
Confidence 65443
No 98
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.30 E-value=1.1e-10 Score=109.15 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=85.2
Q ss_pred EEEEEecC--CChHHHHHHHHhC-CCeEEEECCccCCCCCCEEEECCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 2 VVGVLALQ--GSFNEHIAALKRL-GVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 2 ~I~vl~~~--G~~~~~~~~L~~~-G~~v~~~~~~~~l~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+|+|+.++ -||.++ +.|+.. ++++.++++..++.++|++||||.- -..+.++++ .++.+.|.++++++.|++|
T Consensus 253 ~Iav~~lp~isNFtD~-dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG 330 (486)
T COG1492 253 RIAVIRLPRISNFTDF-DPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG 330 (486)
T ss_pred EEEEecCCCccccccc-hhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence 58888874 466655 555555 8999999999999999999999973 334677765 6888999999999999999
Q ss_pred EehhHHHHHHhhhccc--C---CCcccccceeeEEEee
Q 025812 77 TCAGLIFLANKAVGQK--L---GGQELVGGLDCTVHRN 109 (247)
Q Consensus 77 IC~G~QlL~~~~~~~~--~---g~~~~LG~l~g~v~~~ 109 (247)
||.|+|+|++.+.+.. . +..++||+++.++...
T Consensus 331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~~ 368 (486)
T COG1492 331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCFA 368 (486)
T ss_pred EcchHHhhhhhhcCcccccCcccccCCccceEEEEEec
Confidence 9999999999997732 1 2357999999988765
No 99
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.28 E-value=5.3e-11 Score=122.36 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=67.6
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC--Cc-------------cCCCCCCEEEECCCch--hHH-------HHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGES--TTM-------ARL 54 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~~-------------~~l~~~d~lilpGG~~--~~~-------~~l 54 (247)
|||+||.++|+.+ +...+++++|+++..+. +. .+|.++|+|++|||++ +.. ..+
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 6899999999887 67899999998876543 21 2468899999999863 111 122
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+..+.+.+++++++++++||||.|+|+|.+.
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 333457889999999999999999999999975
No 100
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=99.24 E-value=3.3e-10 Score=103.62 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=119.1
Q ss_pred CEEEEEecCCC----hHHHHHHHHhC---CCeEEEECCcc-----CCCCCCEEEECCCchhHH-HHHHhhCCHHHHHHHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRKPD-----QLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREF 67 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~---G~~v~~~~~~~-----~l~~~d~lilpGG~~~~~-~~l~~~~~~~~~i~~~ 67 (247)
|+|.|.+-.|. +...++.|++. .+.|..+.... ...++++||+|||.+..+ ..|.. .-.+.||++
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~--~g~~~Ir~f 78 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNG--EGNRRIRQF 78 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhCh--HHHHHHHHH
Confidence 89999998773 44666777763 35666554221 246799999999976443 22321 236799999
Q ss_pred HHcCCcEEEEehhHHHHHHhhhcccCC------CcccccceeeEEEeec-cCCccccccccccCCcccccC--CCCccee
Q 025812 68 VKMGKPVWGTCAGLIFLANKAVGQKLG------GQELVGGLDCTVHRNF-FGSQIQSFEAELSVPALASQE--GGPETFR 138 (247)
Q Consensus 68 ~~~g~PilGIC~G~QlL~~~~~~~~~g------~~~~LG~l~g~v~~~~-~g~~~~~~~~~~~v~~~Gw~~--~~~~~~~ 138 (247)
+++|.-.||||+|.++-+..++..+++ +...|++++|..+-.. .|..+.+- ...+...+-|+. ..+..+.
T Consensus 79 V~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se-~Gara~~l~~~~~~~~~~~~~ 157 (367)
T PF09825_consen 79 VENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSE-SGARAVKLKVNDSQAVPSEFS 157 (367)
T ss_pred HHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCC-CCeEeEEEEecCCCCCCceeE
Confidence 999999999999999999887654432 2357888888764321 12222111 001111122221 1223466
Q ss_pred eeeecCceeeec---CCCeEEEEEEeCCCCCC-CCCCCCcEEEEEeeCCEEEEeeCCCCCC
Q 025812 139 GVFIRAPAVLDV---GPDVDVLADYPVPSNKE-NAMPEKKVIVAVRQGNLLGTAFHPELTA 195 (247)
Q Consensus 139 ~~~~~~~l~~~l---~~~~~~~hs~~~~~~~~-~~~~~~~~~~~~~~~~i~gvQFHPE~s~ 195 (247)
.||+..+.|.+. +.+++++++|.+..+.. .......+.+.+.+|.++.+.+|||+++
T Consensus 158 ~yynGG~~Fv~~~~~~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~vGkG~aiLsG~HpE~~~ 218 (367)
T PF09825_consen 158 SYYNGGGVFVDADKYDKNVEVLARYEDDLDVPGGEGKAAVVYCKVGKGRAILSGPHPEFSP 218 (367)
T ss_pred EEECCceEEeCccccCCCeEEEEEEecCCCCCCCCCCcEEEEEEeCCceEEEEecccccCh
Confidence 778888888654 25789999998643211 0011112344466899999999999863
No 101
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.19 E-value=5.9e-11 Score=108.66 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=58.6
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC------eEEEECCc--c----------------CCCCCCEEEECCCchhHHHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP--D----------------QLQNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G~------~v~~~~~~--~----------------~l~~~d~lilpGG~~~~~~~ 53 (247)
+||++. +..+|.|+.++|+.+.+ ++.++... + .+..+|+|++|||+..- -
T Consensus 300 ~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--G 377 (585)
T KOG2387|consen 300 RIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--G 377 (585)
T ss_pred EEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--c
Confidence 577765 25688899999998864 44444321 0 25679999999998642 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
. .+++.+++-+.++++|+||||+|||+..-.+
T Consensus 378 v---eG~i~Aak~ARen~iP~LGiCLGmQ~AvIEf 409 (585)
T KOG2387|consen 378 V---EGKILAAKWARENKIPFLGICLGMQLAVIEF 409 (585)
T ss_pred h---hHHHHHHHHHHhcCCCeEeeehhhhHHHHHH
Confidence 1 2446667777789999999999999977544
No 102
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=99.11 E-value=3.3e-10 Score=96.67 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=80.4
Q ss_pred EEEEEecCCC-----hHHHHHHHHhC-CCeEEEEC-----C-ccCCCCCCEEEECCCc-hhHHHHHHhhCCHHHHHHHHH
Q 025812 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGE-STTMARLAEYHNLFPALREFV 68 (247)
Q Consensus 2 ~I~vl~~~G~-----~~~~~~~L~~~-G~~v~~~~-----~-~~~l~~~d~lilpGG~-~~~~~~l~~~~~~~~~i~~~~ 68 (247)
||+++-.... ..++.++++++ |++++.+. . .+.+.++|+|++|||. ...+..+++ ..+.+.|++++
T Consensus 33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~ 111 (212)
T cd03146 33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL 111 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence 5777775332 33678899999 99988775 2 3457899999999984 344677765 58888999999
Q ss_pred HcCCcEEEEehhHHHHHHhhhc-----ccC-CCcccccceeeEEEee
Q 025812 69 KMGKPVWGTCAGLIFLANKAVG-----QKL-GGQELVGGLDCTVHRN 109 (247)
Q Consensus 69 ~~g~PilGIC~G~QlL~~~~~~-----~~~-g~~~~LG~l~g~v~~~ 109 (247)
++|+|++|+|+|+|+++..+.. ... ...++||++++.+..+
T Consensus 112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~pH 158 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICPH 158 (212)
T ss_pred HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccCC
Confidence 9999999999999999995211 111 2467999999877665
No 103
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.08 E-value=8.6e-10 Score=114.35 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=67.5
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC--C----ccCCCCCCEEEECCCch--hH-------HHHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGES--TT-------MARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~----~~~l~~~d~lilpGG~~--~~-------~~~l~~~~~~~~~ 63 (247)
|||+||.++|+.+ +...+|+.+|+++..+. + ...|.++++|++|||+. +. ...+..+..+.+.
T Consensus 1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206 1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence 5899999999877 67899999998876543 2 13478999999999863 11 1233334456788
Q ss_pred HHHHHH-cCCcEEEEehhHHHHHHh
Q 025812 64 LREFVK-MGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 64 i~~~~~-~g~PilGIC~G~QlL~~~ 87 (247)
++++++ .++++||||.|+|+|.+.
T Consensus 1118 ~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1118 FQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHc
Confidence 999995 599999999999999975
No 104
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.06 E-value=9.2e-10 Score=114.60 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=67.2
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC--Cc----cCCCCCCEEEECCCch--hHH-------HHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP----DQLQNVSSLIIPGGES--TTM-------ARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~~----~~l~~~d~lilpGG~~--~~~-------~~l~~~~~~~~~ 63 (247)
+||+||.++|+.+ +...+|+.+|+++..+. +. ..++++++|++|||+. +.+ ..+..+..+.+.
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 5899999999877 67899999998876554 21 2478999999999853 111 123334567888
Q ss_pred HHHHH-HcCCcEEEEehhHHHHHHh
Q 025812 64 LREFV-KMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 64 i~~~~-~~g~PilGIC~G~QlL~~~ 87 (247)
+++++ +.++++||||.|+|+|++.
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~ 1160 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNL 1160 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHH
Confidence 99999 6899999999999999954
No 105
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.96 E-value=4.7e-09 Score=109.56 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=66.6
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC--Cc----cCCCCCCEEEECCCch--hHH-------HHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP----DQLQNVSSLIIPGGES--TTM-------ARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~~----~~l~~~d~lilpGG~~--~~~-------~~l~~~~~~~~~ 63 (247)
+||+||.++|+.+ +...+|+.+|+++..+. +. ..|.++++|++|||+. +.. ..+..+..+.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence 5899999999877 67899999999876543 21 2488999999999853 211 122223456788
Q ss_pred HHHHH-HcCCcEEEEehhHHHHHHh
Q 025812 64 LREFV-KMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 64 i~~~~-~~g~PilGIC~G~QlL~~~ 87 (247)
+++++ +.++++||||.|+|+|.+.
T Consensus 1116 ~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1116 FEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHh
Confidence 88877 5799999999999999986
No 106
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=87.18 Aligned_cols=85 Identities=22% Similarity=0.466 Sum_probs=55.6
Q ss_pred EEEEecCCC-------------h--HHHHHHHHhCCCeEEEEC--Ccc-----CCCCCCEEEECCCchh--HHHHHHhhC
Q 025812 3 VGVLALQGS-------------F--NEHIAALKRLGVKGVEIR--KPD-----QLQNVSSLIIPGGEST--TMARLAEYH 58 (247)
Q Consensus 3 I~vl~~~G~-------------~--~~~~~~L~~~G~~v~~~~--~~~-----~l~~~d~lilpGG~~~--~~~~l~~~~ 58 (247)
|+||..+|. + .++++.++..|++|+.+. .++ .++-..++|+|||-.. .+-.+.+
T Consensus 55 IGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvk-- 132 (340)
T KOG1559|consen 55 IGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVK-- 132 (340)
T ss_pred eEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHH--
Confidence 788887552 1 278899999999998764 333 2567899999999321 1212211
Q ss_pred CHHHHHHHHHHcC--CcEEEEehhHHHHHHhhh
Q 025812 59 NLFPALREFVKMG--KPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 59 ~~~~~i~~~~~~g--~PilGIC~G~QlL~~~~~ 89 (247)
.+.....+..+.| .|++|||+|+.+|+-.+.
T Consensus 133 kifnk~le~nDaGehFPvyg~CLGFE~lsmiIS 165 (340)
T KOG1559|consen 133 KIFNKVLERNDAGEHFPVYGICLGFELLSMIIS 165 (340)
T ss_pred HHHHHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence 1222233333333 899999999999997763
No 107
>PHA03366 FGAM-synthase; Provisional
Probab=98.84 E-value=2.7e-08 Score=103.91 Aligned_cols=87 Identities=24% Similarity=0.260 Sum_probs=66.7
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC--Cc---cCCCCCCEEEECCCchh--H-------HHHHHhhCCHHHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP---DQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPAL 64 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~~---~~l~~~d~lilpGG~~~--~-------~~~l~~~~~~~~~i 64 (247)
.||+||.++|+.+ +..++++++|+++..+. +. ..++++++|++|||+.. . +..+..+..+.+.+
T Consensus 1029 prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~ 1108 (1304)
T PHA03366 1029 HRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDAL 1108 (1304)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHH
Confidence 3899999999877 67899999999877654 21 23889999999998531 1 12233344567889
Q ss_pred HHHHH-cCCcEEEEeh-hHHHHHHh
Q 025812 65 REFVK-MGKPVWGTCA-GLIFLANK 87 (247)
Q Consensus 65 ~~~~~-~g~PilGIC~-G~QlL~~~ 87 (247)
+++++ .++++||||- |+|+|++.
T Consensus 1109 ~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1109 LRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 99995 5999999998 99999975
No 108
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.81 E-value=1.6e-08 Score=78.02 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=55.9
Q ss_pred EEEEEecCCChH----HHHHHHHhCCCeEEEECCcc----CC-CCCCEEEECCC-chhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 2 VVGVLALQGSFN----EHIAALKRLGVKGVEIRKPD----QL-QNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 2 ~I~vl~~~G~~~----~~~~~L~~~G~~v~~~~~~~----~l-~~~d~lilpGG-~~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
+|+|.+-+|... ++.+.|+..- .+..++..+ .+ .++|.||+||| +.+.+..|.. .+ .+.|++++++|
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g 77 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPGGADLPYCRALNG-KG-NRRIRNFVRNG 77 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECCCChHHHHHHHHh-hC-cHHHHHHHHCC
Confidence 477887777433 4455555433 344433221 22 48999999998 5566777865 35 88999999999
Q ss_pred CcEEEEehhHHHH
Q 025812 72 KPVWGTCAGLIFL 84 (247)
Q Consensus 72 ~PilGIC~G~QlL 84 (247)
+|+||||+|..+.
T Consensus 78 ~p~LGIClGAy~a 90 (114)
T cd03144 78 GNYLGICAGAYLA 90 (114)
T ss_pred CcEEEEecCccce
Confidence 9999999999886
No 109
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.70 E-value=1.7e-07 Score=81.19 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=80.7
Q ss_pred EEEEEecCC---C----hHHHHHHHHhCCCeEEEECCccC----CCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQG---S----FNEHIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G---~----~~~~~~~L~~~G~~v~~~~~~~~----l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~ 69 (247)
||+++-.-+ + +....++++++|+++..++..++ +.++|+|+++||.... +..++ +.++.+.|+++++
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~-~~gl~~~l~~~~~ 111 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLY-ERGLLAPIREAVK 111 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHH-HCCcHHHHHHHHH
Confidence 577776533 3 22577899999999988877666 7899999999997644 44554 4688999999999
Q ss_pred cCCcEEEEehhHHHHHHhhhccc------CCCcccccceeeEEEee
Q 025812 70 MGKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVHRN 109 (247)
Q Consensus 70 ~g~PilGIC~G~QlL~~~~~~~~------~g~~~~LG~l~g~v~~~ 109 (247)
+|+|++|+|+|..+++..+.... .....+||+++..+..+
T Consensus 112 ~G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~pH 157 (233)
T PRK05282 112 NGTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQINPH 157 (233)
T ss_pred CCCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeeccc
Confidence 99999999999999998764211 11246889888766554
No 110
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.67 E-value=1.3e-07 Score=77.06 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=63.4
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHhh
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~~ 57 (247)
||+||.++|. +....+.|++.|+++.+++.. +++ .++|.|++|||... ..+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence 6899998884 446778999999988766421 112 25899999998542 222223
Q ss_pred CCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 58 ~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+.++|+++.++++|+.+||.|.++|+++
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 357889999999999999999999999976
No 111
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.66 E-value=1.7e-07 Score=97.50 Aligned_cols=86 Identities=27% Similarity=0.285 Sum_probs=65.8
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEEC--Cc---cCCCCCCEEEECCCch--hH-------HHHHHhhCCHHHHHH
Q 025812 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP---DQLQNVSSLIIPGGES--TT-------MARLAEYHNLFPALR 65 (247)
Q Consensus 2 ~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~~---~~l~~~d~lilpGG~~--~~-------~~~l~~~~~~~~~i~ 65 (247)
||+||.++|+.+ +...+++++|+++..+. +. ..++++++|+++||+. +. ...+..+..+.+.++
T Consensus 931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739 931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence 699999999877 68899999999877654 21 2467899999999753 11 122333345678899
Q ss_pred HHHH-cCCcEEEEeh-hHHHHHHh
Q 025812 66 EFVK-MGKPVWGTCA-GLIFLANK 87 (247)
Q Consensus 66 ~~~~-~g~PilGIC~-G~QlL~~~ 87 (247)
++++ .++++||||- |+|+|++.
T Consensus 1011 ~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1011 TFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHhCCCceEEEeCcHHHHHHHHc
Confidence 9995 5999999997 99999985
No 112
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.62 E-value=2.2e-07 Score=79.69 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=64.4
Q ss_pred CEEEEEec-----CCC----hHHHHHHHHhCCCeEEEECCc---------------------------------c-----
Q 025812 1 MVVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP---------------------------------D----- 33 (247)
Q Consensus 1 m~I~vl~~-----~G~----~~~~~~~L~~~G~~v~~~~~~---------------------------------~----- 33 (247)
+||+|+.. +|. +....+.|++.|++++++++. .
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 28988875 553 446779999999998876421 1
Q ss_pred CCCCCCEEEECCCchhH--H-------HHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 34 QLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 34 ~l~~~d~lilpGG~~~~--~-------~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
+.++||+|++|||.... + +.++.+..+.+.++++.++|+|+.+||.|.++|+.++
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 13479999999995321 1 2233344578899999999999999999999998864
No 113
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.59 E-value=2.4e-07 Score=75.32 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=63.3
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc-c-------------------CC--CCCCEEEECCCchhHHHHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-D-------------------QL--QNVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-~-------------------~l--~~~d~lilpGG~~~~~~~l~ 55 (247)
||+||.++|- +....+.|++.|+++.+++.. . +. .++|.|++|||.. ...+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~--~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTN--PDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCC--hhhhc
Confidence 6899998884 445678899999998876533 1 11 2579999999863 12232
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 33456889999999999999999999999976
No 114
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.55 E-value=4.3e-07 Score=75.22 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=62.4
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc----------------------------------cCC--CCCCEE
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQL--QNVSSL 41 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~----------------------------------~~l--~~~d~l 41 (247)
||+|+.++|. +....+.|++.|+++.+++.. +++ .++|+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 6889888774 446778999999988876421 012 257999
Q ss_pred EECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 42 ilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
++|||... ..+..+..+.++|+++.+.++|+.+||.|.++|+.+
T Consensus 81 iv~GG~~~--~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 81 VIPGGRAP--EYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred EEcCCCCh--hhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 99998632 122222346789999999999999999999999986
No 115
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.53 E-value=8.2e-07 Score=70.58 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=65.4
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
+||+||.++|. +..+.+.|+..|+++.+++.. ++. .++|.||+|||.... ..+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~-~~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA-FALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH-HHHcc
Confidence 58999999884 446788999999998876531 122 258999999985432 12223
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++|+.+||.|..+|+++
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 3457899999999999999999999999987
No 116
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.50 E-value=6.7e-07 Score=65.30 Aligned_cols=81 Identities=31% Similarity=0.476 Sum_probs=59.2
Q ss_pred EEEEecCCCh----HHHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 3 VGVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 3 I~vl~~~G~~----~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|+..++.. ....+.++..++++.+++... +..++|+|++|||........ ....+.+.+++..+++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~ 79 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAG 79 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcC
Confidence 3556655543 478899999999998886543 256899999999854321110 1123578888988889
Q ss_pred CcEEEEehhHHHH
Q 025812 72 KPVWGTCAGLIFL 84 (247)
Q Consensus 72 ~PilGIC~G~QlL 84 (247)
+|++|+|.|+|++
T Consensus 80 ~~i~~~c~g~~~l 92 (115)
T cd01653 80 KPILGICLGAQLL 92 (115)
T ss_pred CEEEEECchhHhH
Confidence 9999999999999
No 117
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3.6e-06 Score=71.13 Aligned_cols=184 Identities=21% Similarity=0.200 Sum_probs=106.9
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCC---eEEEECCc-----cCCCCCCEEEECCCchhHHH-HHHhhCCHHHHHHHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGV---KGVEIRKP-----DQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREF 67 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~---~v~~~~~~-----~~l~~~d~lilpGG~~~~~~-~l~~~~~~~~~i~~~ 67 (247)
|+|.|..-.|. +.+.++.|+..-. .+..+.-. ...+...+||+|||.+-.+- .+. .-..+.|..+
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~--g~g~a~i~~y 78 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQ--GLGTARIKNY 78 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhc--chhhhhHHHH
Confidence 88999887774 3344555555432 33333211 13356789999999764332 221 1125688999
Q ss_pred HHcCCcEEEEehhHHHHHHhhhcccCC-----CcccccceeeEEEeec-cCCcccccc----ccccCCcccccCCCCcce
Q 025812 68 VKMGKPVWGTCAGLIFLANKAVGQKLG-----GQELVGGLDCTVHRNF-FGSQIQSFE----AELSVPALASQEGGPETF 137 (247)
Q Consensus 68 ~~~g~PilGIC~G~QlL~~~~~~~~~g-----~~~~LG~l~g~v~~~~-~g~~~~~~~----~~~~v~~~Gw~~~~~~~~ 137 (247)
+++|.-+||||+|...=+...+...+. +...|+++||++.--. .|..+.|.. ..+.++.+- ...
T Consensus 79 vk~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~GP~y~gF~Y~S~~GaRaa~l~~~d~~------~~~ 152 (253)
T COG4285 79 VKEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTARGPAYAGFSYNSESGARAAPLKFNDFL------GDC 152 (253)
T ss_pred HhcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccCCCccCCccccCcccceeeeeeeCCCc------cce
Confidence 999999999999998877766554332 2357888888764211 011111110 011222110 113
Q ss_pred eeeeecCceeeec--CCCeEEEEEEeCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCc
Q 025812 138 RGVFIRAPAVLDV--GPDVDVLADYPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTAD 196 (247)
Q Consensus 138 ~~~~~~~~l~~~l--~~~~~~~hs~~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~ 196 (247)
+.+|+....|.+. -+++.+.++|.+.+... +...-..+.++++.-+-.|||..+.
T Consensus 153 ~~~FNGG~~F~~aE~~~~v~I~ArY~e~~~~p----AAIV~~~vgkG~vvLsGpH~Ey~p~ 209 (253)
T COG4285 153 YAYFNGGGYFEDAENYPNVEIEARYEELPGKP----AAIVSCTVGKGLVVLSGPHPEYLPE 209 (253)
T ss_pred EEEEcCceEEeccCCCCCcEEEEehhcCCCCc----eeEEEEEecCccEEEecCChhhchh
Confidence 5566777777654 34678888887533210 0122334568999999999998764
No 118
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.41 E-value=1.9e-06 Score=69.57 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=62.6
Q ss_pred EEEEecCCC----hHHHHHHHHhCCCeEEEECCc-------------------cCC--CCCCEEEECCCchhHHHHHHhh
Q 025812 3 VGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (247)
Q Consensus 3 I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-------------------~~l--~~~d~lilpGG~~~~~~~l~~~ 57 (247)
|+||.++|. +....+.|+..|+++.+++.. ++. .++|.|++|||.... ..+.++
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence 578888774 446778999999887765421 122 579999999986211 223334
Q ss_pred CCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 58 ~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+.++|+++.++++++.+||.|..+|+++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 457889999999999999999999999987
No 119
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.38 E-value=2.1e-06 Score=71.46 Aligned_cols=85 Identities=27% Similarity=0.416 Sum_probs=64.4
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc---------------------cCC--CCCCEEEECCC-chhHHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGG-ESTTMA 52 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~---------------------~~l--~~~d~lilpGG-~~~~~~ 52 (247)
|||+|+.++|. +....+.|+++|.++.++... +++ +++|+|++||| ....
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~-- 80 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPE-- 80 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchh--
Confidence 48999998884 557789999999977654211 123 38999999999 4322
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+..+.++++++.+.++|+.+||.|.++|..+
T Consensus 81 ~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 81 YLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred hccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 22212357889999999999999999999999987
No 120
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.33 E-value=1.6e-06 Score=60.47 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=56.1
Q ss_pred EEEecCCCh----HHHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 4 ~vl~~~G~~----~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
+++..++.. ....+.+++.++++.++.... +..++|++|+|||........ ......+.+++..++++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGK 80 (92)
T ss_pred EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCC
Confidence 455544432 477899999999888775432 256899999999864332110 11235778888888899
Q ss_pred cEEEEehhHHHH
Q 025812 73 PVWGTCAGLIFL 84 (247)
Q Consensus 73 PilGIC~G~QlL 84 (247)
|++|+|.|.|++
T Consensus 81 ~i~~~~~g~~~~ 92 (92)
T cd03128 81 PVLGICLGAQLL 92 (92)
T ss_pred EEEEEecccccC
Confidence 999999999874
No 121
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.32 E-value=3.5e-06 Score=69.27 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=62.2
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEE--ECC----c---------------cC--CCCCCEEEECCCchhHHHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVE--IRK----P---------------DQ--LQNVSSLIIPGGESTTMARL 54 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~--~~~----~---------------~~--l~~~d~lilpGG~~~~~~~l 54 (247)
||+||.++|. +....+.|+..|.++.+ ++. + ++ ..++|.|++|||.... ..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~ 79 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL 79 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence 6899999884 44677889998876654 431 1 01 3468999999985321 222
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 223356889999999999999999999999987
No 122
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=98.25 E-value=1.1e-05 Score=68.62 Aligned_cols=107 Identities=22% Similarity=0.227 Sum_probs=76.1
Q ss_pred EEEEEecCC-----ChHHHHHHHHhCCCeEEEECCc-----c----CCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHH
Q 025812 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP-----D----QLQNVSSLIIPGGESTT-MARLAEYHNLFPALRE 66 (247)
Q Consensus 2 ~I~vl~~~G-----~~~~~~~~L~~~G~~v~~~~~~-----~----~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~ 66 (247)
||+++.... ....+.++++++|++++.+... + .+.++|+|+++||.... +..+++ +++.+.|++
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~~~~~i~~ 109 (210)
T cd03129 31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRE-TPLLDAILK 109 (210)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHh-CChHHHHHH
Confidence 577776533 3446789999999987754321 1 36899999999996543 555654 567788888
Q ss_pred HHHcCCcEEEEehhHHHHHHh--hhcccCC-----CcccccceeeEEEee
Q 025812 67 FVKMGKPVWGTCAGLIFLANK--AVGQKLG-----GQELVGGLDCTVHRN 109 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~--~~~~~~g-----~~~~LG~l~g~v~~~ 109 (247)
.+.+|+|+.|+|+|.++++.. ......+ ...+||++++.+..+
T Consensus 110 ~~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~pH 159 (210)
T cd03129 110 RVARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIIDPH 159 (210)
T ss_pred HHHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeECCC
Confidence 888999999999999999985 2221111 346889888777665
No 123
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.21 E-value=4.3e-06 Score=69.33 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=59.9
Q ss_pred EEEEecCCC----hHHHHHHHHhCC-------CeEEEECCc------------------cCCCCCCEEEECCCchhHHHH
Q 025812 3 VGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 3 I~vl~~~G~----~~~~~~~L~~~G-------~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~~ 53 (247)
|+||.++|. +....+.|+.++ +++.+++.. ++..++|.|++|||.... .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~ 78 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G 78 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence 567777773 446677888776 666665421 134579999999985421 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+..+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 2223456889999999999999999999999987
No 124
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.21 E-value=1.3e-05 Score=67.18 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=61.4
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECC------c-----------c----CC--CCCCEEEECCCchhHHHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK------P-----------D----QL--QNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~------~-----------~----~l--~~~d~lilpGG~~~~~~~ 53 (247)
|||+||.++|. +....+.|++.|+++.+++. + + ++ +++|.|++|||.... ..
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~ 81 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC 81 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence 48999998884 55678899999987766431 1 0 12 368999999985321 12
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHH
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~ 86 (247)
+..+..+.++|+++.++++++.+||.|..+|..
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 222234688999999999999999999987554
No 125
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.14 E-value=1.4e-05 Score=66.67 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=40.8
Q ss_pred CCCCCEEEECCCchhHHH-HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 35 LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 35 l~~~d~lilpGG~~~~~~-~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..++|.|++|||...... .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 468999999997432111 23333457889999999999999999999999986
No 126
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.13 E-value=1.1e-05 Score=69.05 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=56.5
Q ss_pred hHHHHHHHHhCCCeEEEECCc---------------------------------c-----CCCCCCEEEECCCchh--HH
Q 025812 12 FNEHIAALKRLGVKGVEIRKP---------------------------------D-----QLQNVSSLIIPGGEST--TM 51 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~---------------------------------~-----~l~~~d~lilpGG~~~--~~ 51 (247)
+....+.|++.|++++++++. . ++++||+|+||||... .+
T Consensus 19 l~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l 98 (213)
T cd03133 19 AVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNL 98 (213)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhh
Confidence 446778999999998886531 1 1246999999999532 12
Q ss_pred HHH-------HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 52 ARL-------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 52 ~~l-------~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
..+ +.+..+.+.++++.++|+|+.+||.|.++|+.+.
T Consensus 99 ~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 99 SDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred hhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 111 1223468899999999999999999999999864
No 127
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.13 E-value=5.8e-06 Score=67.82 Aligned_cols=82 Identities=28% Similarity=0.364 Sum_probs=58.9
Q ss_pred EEEEecCCC----hHHHHHHHHhC-CCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHhh
Q 025812 3 VGVLALQGS----FNEHIAALKRL-GVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (247)
Q Consensus 3 I~vl~~~G~----~~~~~~~L~~~-G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~~ 57 (247)
|+|+.++|- +....+.|++. ++++.+++.. +++ .++|.|++|||..... . .+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~--~-~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN--P-EA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCccccc--C-Cc
Confidence 578887773 44667888876 6777665421 123 4689999999853211 1 12
Q ss_pred CCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 58 ~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+.++|+++.++++++.+||.|.++|+++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 346789999999999999999999999987
No 128
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.12 E-value=9e-06 Score=70.38 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCeEEEECCc----------------------------------------c--CCCCCCEEEECCCchhH
Q 025812 13 NEHIAALKRLGVKGVEIRKP----------------------------------------D--QLQNVSSLIIPGGESTT 50 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~----------------------------------------~--~l~~~d~lilpGG~~~~ 50 (247)
....+.|++.|+++++++.. + +.++||+|++|||...
T Consensus 28 ~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~- 106 (231)
T cd03147 28 LHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGT- 106 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCch-
Confidence 35678999999999886531 0 1357999999999643
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 51 MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 51 ~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+..+..+.+.|+++.++++|+.+||.|.++|..+
T Consensus 107 ~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 107 LFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 2334444457889999999999999999999999976
No 129
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.11 E-value=7.5e-06 Score=67.47 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=61.0
Q ss_pred EEEEecCC----ChHHHHHHHHhCC-----CeEEEECCc------------------cCCCCCCEEEECCCchhHHHHHH
Q 025812 3 VGVLALQG----SFNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 3 I~vl~~~G----~~~~~~~~L~~~G-----~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~~l~ 55 (247)
|+||.++| .+....+.|+.++ +++.+++.. ++..++|.||+|||... ..+.
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~--~~~~ 78 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGT--RALV 78 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcch--hhhc
Confidence 56777777 3456778888887 887776421 12347999999998532 1233
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+.++|+++.++++++.++|.|..+|+++
T Consensus 79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred cCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 33456889999999999999999999999976
No 130
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.05 E-value=2.3e-05 Score=77.83 Aligned_cols=86 Identities=24% Similarity=0.223 Sum_probs=66.6
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc---------------cCC-----CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP---------------DQL-----QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~---------------~~l-----~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+||..+|. +..+.++|++.|+.+.+++.. ..+ ..+|+|++|||.... ..+..
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~ 676 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD 676 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence 58999999884 446789999999988876531 012 258999999986432 33433
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.+.+++|.+||.|.++|+.+
T Consensus 677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 3457889999999999999999999999986
No 131
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=98.01 E-value=1.8e-05 Score=65.55 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 35 l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..++|.||+|||.... +..+..+.++|+++.++++.+.++|.|..+|+++
T Consensus 62 ~~~~D~liipgg~~~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGAR---RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCcc---ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 4579999999985422 2233456889999999999999999999999986
No 132
>PRK04155 chaperone protein HchA; Provisional
Probab=98.01 E-value=3.5e-05 Score=68.78 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=42.1
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
++||+|+||||... +..|.++..+.+.|+++.++++|+.+||.|.++|..+
T Consensus 146 ~dYDaV~iPGG~g~-~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGA-LIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCch-HHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 58999999999653 3445555667889999999999999999999987765
No 133
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.96 E-value=3e-05 Score=67.17 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=41.1
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
++||+|++|||... +..|..+..+.+.++++.++|+|+-+||.|.+.|..+
T Consensus 95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999543 3345445567889999999999999999999988765
No 134
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.65 E-value=3.4e-05 Score=61.78 Aligned_cols=52 Identities=33% Similarity=0.597 Sum_probs=39.9
Q ss_pred CCCCCEEEECCCchhHHHHHHhh-CCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 35 LQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 35 l~~~d~lilpGG~~~~~~~l~~~-~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+||+||+|||.... ..|..+ ..+.++|+++.++++|+.+||.|..+|+.+
T Consensus 35 ~~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4579999999997632 344312 357889999999999999999999999987
No 135
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.63 E-value=0.00044 Score=61.80 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=74.5
Q ss_pred CEEEEEecCCChHHHH-HHHHhCC---C--eEEEECCc-------------------cCC--CCCCEEEECCCchhHHH-
Q 025812 1 MVVGVLALQGSFNEHI-AALKRLG---V--KGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA- 52 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~-~~L~~~G---~--~v~~~~~~-------------------~~l--~~~d~lilpGG~~~~~~- 52 (247)
+||+||+..=+-.... +.++-++ . ++..+... +++ ..+|++|++|.+.+.++
T Consensus 35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F 114 (298)
T PF04204_consen 35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF 114 (298)
T ss_dssp EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence 4799999876655433 3444444 3 33333211 123 47999999997543221
Q ss_pred ----HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCC--CcccccceeeEEEeeccCCccccccccccCCc
Q 025812 53 ----RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLG--GQELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (247)
Q Consensus 53 ----~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g--~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~ 126 (247)
...+ +.+.+.-+.+.-.+.|.||.|.|......-+..+. ..+..|+++.++..
T Consensus 115 e~V~YW~E---l~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~~------------------ 173 (298)
T PF04204_consen 115 EEVDYWDE---LTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVLD------------------ 173 (298)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-------------------
T ss_pred ccCCcHHH---HHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeeccC------------------
Confidence 1111 12222222235789999999999955544221100 12344444433221
Q ss_pred ccccCCCCcceeeeeecCceeeecCCCeEEEEEEeCCC-------CCC----CCCCCCc-EEEEEeeCCEEEEeeCCCCC
Q 025812 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPS-------NKE----NAMPEKK-VIVAVRQGNLLGTAFHPELT 194 (247)
Q Consensus 127 ~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~~~~-------~~~----~~~~~~~-~~~~~~~~~i~gvQFHPE~s 194 (247)
.++||++++.+.+..=||-+..- .+. ..+...+ ....-+.++-+=++-|||..
T Consensus 174 ---------------~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd 238 (298)
T PF04204_consen 174 ---------------PDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYD 238 (298)
T ss_dssp ---------------SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--
T ss_pred ---------------CCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccC
Confidence 13455555544444444443210 000 0111222 33444566788889999998
Q ss_pred CchHHHHHHHHHHH
Q 025812 195 ADTRWHSYFLKMMS 208 (247)
Q Consensus 195 ~~~~i~~nfl~~~~ 208 (247)
.+ .+.+...+.+.
T Consensus 239 ~~-TL~~EY~RD~~ 251 (298)
T PF04204_consen 239 AD-TLAKEYRRDLA 251 (298)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHh
Confidence 86 45666665554
No 136
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.61 E-value=0.00014 Score=62.48 Aligned_cols=51 Identities=33% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+++|+|++|||.... ..+..+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 89 ~~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 378999999986421 122223357889999999999999999999999987
No 137
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=97.60 E-value=0.00021 Score=57.74 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=65.0
Q ss_pred HHHHHHHhCCCeEEEECCcc--------CCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHH
Q 025812 14 EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~--------~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL 84 (247)
.+.++++++|+++..+.... .+.++|+|++.||.+.. +..+++ +++.+.|++++++|+++.|+-+|..++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 56789999999987765332 25789999999996544 566654 789999999999999999999999998
Q ss_pred HHhhhccc-CC-----CcccccceeeEEEee
Q 025812 85 ANKAVGQK-LG-----GQELVGGLDCTVHRN 109 (247)
Q Consensus 85 ~~~~~~~~-~g-----~~~~LG~l~g~v~~~ 109 (247)
+..+.... .. ...+||+++..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~gLgl~~~~i~pH 113 (154)
T PF03575_consen 83 GPSIETDSDSDDVELTNYDGLGLLPFVIIPH 113 (154)
T ss_dssp SSBSCCGTTCCGCCECESB---SSSSEEETS
T ss_pred cCceeecCcCCcccCCCCCcCCCCCCEeECC
Confidence 77653221 01 124788888776644
No 138
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.53 E-value=0.00034 Score=63.09 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=56.4
Q ss_pred EEEEEecCCC----hHHHHHHHHhC----C---CeEEEECCc------------------cCCCCCCEEEECCCchhHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRL----G---VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMA 52 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~----G---~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~ 52 (247)
+|+|+-++|- +...++.|+.. + +++.+++.. ++.+++|.||+|||......
T Consensus 11 ~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~~~~ 90 (322)
T PRK09393 11 LVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGPDAP 90 (322)
T ss_pred EEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCccccc
Confidence 7999999984 33445555332 1 244443211 13568999999998532111
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+.++|++..++++++.+||.|..+|+++
T Consensus 91 ---~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 91 ---VPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred ---CCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 12346889999999999999999999999987
No 139
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=97.49 E-value=0.0001 Score=59.89 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=39.0
Q ss_pred CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 34 ~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..++|.||+|||... .....+..+.++|++..++++++.++|.|..+|+++
T Consensus 58 ~~~~~D~lvvpg~~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGF--DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STTH--HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCCc--hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 3568999999998761 111122245788888888999999999999999987
No 140
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.42 E-value=0.00011 Score=61.02 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=34.1
Q ss_pred CCCCCEEEECCCchhHH-----HHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhh
Q 025812 35 LQNVSSLIIPGGESTTM-----ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 35 l~~~d~lilpGG~~~~~-----~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
..++|++|++|.+-+.+ +...+-..+.++.+ +..+|+|++|.|+|+...+..
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~---~~v~stl~iCWgaqaal~~~y 116 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAK---THVTSTLFSCWAAMAALYYFY 116 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHc
Confidence 46899999999754221 11111112233433 468999999999999988873
No 141
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.18 E-value=0.0016 Score=55.77 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=48.9
Q ss_pred HHHHHHhCCCeEEEECCc-------------------cC--CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 15 HIAALKRLGVKGVEIRKP-------------------DQ--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~-------------------~~--l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
..+.|++.|+++++.... .| -+.||.+|||||-+- .+.|++.....+.+++..+.|++
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g-~e~L~~~~~v~~lvK~q~~~gkL 102 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPG-AETLSECEKVVDLVKEQAESGKL 102 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchh-hhhhhhcHHHHHHHHHHHhcCCe
Confidence 368999999999887521 01 157999999999431 13344333456889999999999
Q ss_pred EEEEehhH
Q 025812 74 VWGTCAGL 81 (247)
Q Consensus 74 ilGIC~G~ 81 (247)
+..||.|-
T Consensus 103 IaaICaap 110 (247)
T KOG2764|consen 103 IAAICAAP 110 (247)
T ss_pred EEEeecch
Confidence 99999997
No 142
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.09 E-value=0.0037 Score=55.72 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=47.7
Q ss_pred CEEEEEecCCChH----HHHHHHHhCCCe--EEEECCc-------------------cCC--CCCCEEEECCCchhHHH-
Q 025812 1 MVVGVLALQGSFN----EHIAALKRLGVK--GVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA- 52 (247)
Q Consensus 1 m~I~vl~~~G~~~----~~~~~L~~~G~~--v~~~~~~-------------------~~l--~~~d~lilpGG~~~~~~- 52 (247)
+||+||...=+-. .+.+.|...... ++.+... +++ ..+||+|++|.+-+.++
T Consensus 36 L~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~F 115 (300)
T TIGR01001 36 LEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPF 115 (300)
T ss_pred eeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCc
Confidence 4899999854433 344555444433 4433211 123 57999999997543221
Q ss_pred ----HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 53 ----RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 53 ----~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
...+ +.+.+.-.-+.-...|.||.|.|......
T Consensus 116 eeV~YW~E---l~~I~dwsk~~v~Stl~iCWaAqAaLy~~ 152 (300)
T TIGR01001 116 EDVAYWEE---LTEIMEWSKHNVTSTMFICWAAQAGLKYF 152 (300)
T ss_pred ccCCcHHH---HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 1111 12222222225689999999999966655
No 143
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=97.01 E-value=0.0046 Score=52.90 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=63.8
Q ss_pred EEEEEecCC-----ChHHHHHHHHhCCCe-EEEECCc-----------cCCCCCCEEEECCCchhH-HHHHHhhCCHHHH
Q 025812 2 VVGVLALQG-----SFNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~~G-----~~~~~~~~L~~~G~~-v~~~~~~-----------~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~ 63 (247)
||+++...+ ....+.++++++|++ +..+... +.+.++|+|++.||.... ++.++ ++++.+.
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~-~t~l~~~ 109 (217)
T cd03145 31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALG-GTPLLDA 109 (217)
T ss_pred cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHc-CChHHHH
Confidence 688887643 133577899999985 4443221 126789999999996543 45554 3578889
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
|++++++|.|+.|+-+|..+++..+
T Consensus 110 l~~~~~~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHcCCEEEEccHHHHhhhhcc
Confidence 9999999999999999999998864
No 144
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=96.90 E-value=0.0049 Score=53.98 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=72.3
Q ss_pred EEEEEecC-CC----hHHHHHHHHhCCCe-EEEEC--Ccc---------CCCCCCEEEECCCchhH-HHHHHhhCCHHHH
Q 025812 2 VVGVLALQ-GS----FNEHIAALKRLGVK-GVEIR--KPD---------QLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~~-G~----~~~~~~~L~~~G~~-v~~~~--~~~---------~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~ 63 (247)
||+|+-.- +. .....++++++|++ +.++. +.+ .+.++|+|++.||.... .+.++ ++++.+.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~-~t~l~~~ 108 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLG-DTPLLDR 108 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHc-CCcHHHH
Confidence 68888652 22 22566789999984 44433 211 26789999999996543 45554 4678899
Q ss_pred HHHHHHcCCcEEEEehhHHHHHHhhhcc-------cCC---CcccccceeeEEE
Q 025812 64 LREFVKMGKPVWGTCAGLIFLANKAVGQ-------KLG---GQELVGGLDCTVH 107 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~QlL~~~~~~~-------~~g---~~~~LG~l~g~v~ 107 (247)
|++++++|.|+.|+-+|..+++..+... ... -..+||+++..+.
T Consensus 109 l~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi 162 (250)
T TIGR02069 109 LRKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI 162 (250)
T ss_pred HHHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence 9999999999999999999998766321 001 1257888887653
No 145
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=96.66 E-value=0.0051 Score=44.39 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=37.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||| +-++.++.++|++.|++++...+..++..+|++|+.|-
T Consensus 3 kIAV---E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 3 KIAV---EEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ 44 (80)
T ss_pred eEEe---cCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence 5666 56788999999999999999998888999999999994
No 146
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0064 Score=51.75 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=57.5
Q ss_pred HHHHHHHhCCCeEEEEC---C-ccC----CCCCCEEEECCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHH
Q 025812 14 EHIAALKRLGVKGVEIR---K-PDQ----LQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~---~-~~~----l~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL 84 (247)
...++|+.+|+++.-++ + .++ +.+.|.|+++||.. ..+..++ +.++.+.||+.+++|+|++|+-+|..+-
T Consensus 53 k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lk-e~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 53 KVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELK-ETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHH-HhCcHHHHHHHHHcCCceEEeccCceee
Confidence 46789999999887543 2 223 45699999999953 3344554 4789999999999999999999998887
Q ss_pred HHhhh
Q 025812 85 ANKAV 89 (247)
Q Consensus 85 ~~~~~ 89 (247)
+..+.
T Consensus 132 ~p~I~ 136 (224)
T COG3340 132 GPTIE 136 (224)
T ss_pred cCcee
Confidence 76653
No 147
>PRK03094 hypothetical protein; Provisional
Probab=96.36 E-value=0.01 Score=42.69 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=35.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|||| +-++.++.++|++.|++|+.+.++.+...+|++|++|
T Consensus 3 kIaV---E~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG 43 (80)
T PRK03094 3 KIGV---EQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTG 43 (80)
T ss_pred eEEe---ecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeC
Confidence 5666 4578889999999999999988888889999999999
No 148
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.025 Score=56.88 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=57.0
Q ss_pred EEEEEecCCCh--HHHHHHHHhCCCeEEEEC---Cc---cCCCCCCEEEECCCchhH--H----HHHH---hhCCHHHHH
Q 025812 2 VVGVLALQGSF--NEHIAALKRLGVKGVEIR---KP---DQLQNVSSLIIPGGESTT--M----ARLA---EYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~~G~~--~~~~~~L~~~G~~v~~~~---~~---~~l~~~d~lilpGG~~~~--~----~~l~---~~~~~~~~i 64 (247)
|||||..+|.. .+...++..+|+++.-+. -. ..++++-+|+++||+..+ + .|.+ -+.+.....
T Consensus 1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence 79999998854 478899999998765332 11 246889999999996522 1 1211 111223333
Q ss_pred HHHHH-cCCcEEEEehhHHHHHHh
Q 025812 65 REFVK-MGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 65 ~~~~~-~g~PilGIC~G~QlL~~~ 87 (247)
.++.. ++.--||||.|-|+|++.
T Consensus 1140 ~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHhcCCCceeeecccHhHHHHHh
Confidence 33333 567789999999999975
No 149
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=95.30 E-value=0.027 Score=51.24 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=37.0
Q ss_pred CCCCCEEEECCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 35 LQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 35 l~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
...+|.+++.||.. +..... +.+.++|++..+.|.++-|||.|..+|+++
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~---~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNA---PALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cCcceEEEEecCCCcccccch---HHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 34588888866532 211110 135789999999999999999999999988
No 150
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.73 E-value=0.18 Score=45.14 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=49.0
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--------------------cCC-CCCCEEEECCCchhHHHH
Q 025812 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------------DQL-QNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 1 m~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------------~~l-~~~d~lilpGG~~~~~~~ 53 (247)
|||+|+...+. ...+.++|++.|+++.+-... +++ .++|.+|.-||..+.+.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~- 79 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFLR- 79 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHHH-
Confidence 99999987654 335677899999988763310 122 25899999888765432
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
..+.+...++|+|||=.|.
T Consensus 80 ---------aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 80 ---------TATYVGNSNIPILGINTGR 98 (292)
T ss_pred ---------HHHHhcCCCCCEEEEecCC
Confidence 2344444689999998875
No 151
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.32 E-value=0.32 Score=39.83 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=39.8
Q ss_pred CCCCEEEECCCchhH--HHHH-------HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhh
Q 025812 36 QNVSSLIIPGGESTT--MARL-------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 36 ~~~d~lilpGG~~~~--~~~l-------~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~ 89 (247)
+++|.||+|||+..+ +..+ +-+.++..+.+.+.+.|+|+=-||...-+|...++
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g 146 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC
Confidence 578999999987532 1111 11234566778888899999999999999998874
No 152
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.25 E-value=0.26 Score=43.85 Aligned_cols=70 Identities=24% Similarity=0.242 Sum_probs=48.6
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEECCc------------cCC--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKP------------DQL--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 1 m~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~------------~~l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
|||+|+...+. ...+.++|++.|.++.+.... .++ .++|.+|.-||..+.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL--------- 71 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL--------- 71 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence 99999988774 335778899999988875311 011 3689999988876543
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
+.++ ....+.|++||=.|.
T Consensus 72 -~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 72 -RIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -HHHH-hcCCCCeEEEEeCCC
Confidence 2233 334589999999886
No 153
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.82 E-value=0.53 Score=42.48 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=47.1
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEECCc-----------------------cCC-CCCCEEEECCCchhH
Q 025812 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTT 50 (247)
Q Consensus 1 m~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-----------------------~~l-~~~d~lilpGG~~~~ 50 (247)
|+|+|+...+. ...+.++|++.|+++.+.... .++ .++|.+|.-||..+.
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTl 81 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTV 81 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHH
Confidence 25999987664 235677899999988764320 122 258999998887654
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 51 ~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
+ ...+.+...++|+|||=.|
T Consensus 82 L----------~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 82 L----------SAARQLAPCGIPLLTINTG 101 (305)
T ss_pred H----------HHHHHhcCCCCcEEEEeCC
Confidence 3 2334444568999999876
No 154
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=91.95 E-value=0.47 Score=40.21 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=40.5
Q ss_pred HHHHHHH-hCCCeEEEECCcc-----CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 14 EHIAALK-RLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 14 ~~~~~L~-~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+.+.|+ ..++++++..+++ .|+++|+||+.....+.+.. ...+.|++++++|++++++..+.
T Consensus 23 ~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-----~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 23 ALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-----EQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-----HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred HHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-----HHHHHHHHHHHcCCCEEEEcccc
Confidence 3556777 5688888876643 47899999995532211111 12567889999999999999443
No 155
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=91.21 E-value=1.3 Score=36.29 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=52.5
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECCc--c--CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH-
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP--D--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~~--~--~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~- 69 (247)
||+.|+-- +|+-.. ++..|++.|..+.+.+.. . +++++|.+||.-+.. +..+. +.+..+++++.+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~--~~h~~--~~~~~Fv~k~~e~ 76 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIR--YGHFH--EAVQSFVKKHAEA 76 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchh--hhhhH--HHHHHHHHHHHHH
Confidence 88888764 677663 456788999988876432 2 678999999976532 12221 123456666665
Q ss_pred -cCCcEEEEehhHH
Q 025812 70 -MGKPVWGTCAGLI 82 (247)
Q Consensus 70 -~g~PilGIC~G~Q 82 (247)
+.+|.-.+|.+.-
T Consensus 77 L~~kP~A~f~vnl~ 90 (175)
T COG4635 77 LSTKPSAFFSVNLT 90 (175)
T ss_pred HhcCCceEEEeehh
Confidence 5899999998753
No 156
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.00 E-value=1.3 Score=39.58 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=46.8
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCeEEEECCc-----------cCC-CCCCEEEECCCchhHHHHHHhhCCHHHHH
Q 025812 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~-----------~~l-~~~d~lilpGG~~~~~~~l~~~~~~~~~i 64 (247)
||+|+...+. ...+.++|++.|+++.+-... .++ .++|.+|.-||..+.+ ...
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~aa 81 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SLC 81 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HHH
Confidence 6999987653 124567788889888764321 222 3689999888776543 233
Q ss_pred HHHHHcCCcEEEEehhH
Q 025812 65 REFVKMGKPVWGTCAGL 81 (247)
Q Consensus 65 ~~~~~~g~PilGIC~G~ 81 (247)
+.+...++|+|||=.|.
T Consensus 82 ~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 82 RKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 44445689999998875
No 157
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=90.77 E-value=1.2 Score=36.75 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=42.5
Q ss_pred CEEEEEec--CCChHHHHHHHHhC---CCeEEEECCc----cCCCCCCEEEECCCc--hhHHHHHHhhCCHHHHHHHHH-
Q 025812 1 MVVGVLAL--QGSFNEHIAALKRL---GVKGVEIRKP----DQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV- 68 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~~---G~~v~~~~~~----~~l~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~~~~- 68 (247)
|||+|+-. .||-..+++++.+. |.++.+++.. .++.++|.||+.++. ...... +.+++++..
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~~ 74 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHAT 74 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHHH
Confidence 88888775 58877665544332 5666654322 257789999997742 111111 122222221
Q ss_pred -HcCCcEEEEehh
Q 025812 69 -KMGKPVWGTCAG 80 (247)
Q Consensus 69 -~~g~PilGIC~G 80 (247)
-+++|+.-+|.|
T Consensus 75 ~l~~K~v~~F~v~ 87 (177)
T PRK11104 75 QLNQMPSAFFSVN 87 (177)
T ss_pred HhCCCeEEEEEec
Confidence 158898888888
No 158
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.70 E-value=1.9 Score=38.77 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=47.0
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc-------------------cCC-CCCCEEEECCCchhHHHHHH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-------------------DQL-QNVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-------------------~~l-~~~d~lilpGG~~~~~~~l~ 55 (247)
||+|+...+. ...+.++|++.|+++.+.... .++ ..+|.+|.-||..+.+.
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~--- 83 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLS--- 83 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHHH---
Confidence 5999987654 235677899999988764210 122 25899999888765432
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
..+.+...++|+|||=.|.
T Consensus 84 -------aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 84 -------VAREIAPRAVPIIGINQGH 102 (296)
T ss_pred -------HHHHhcccCCCEEEEecCC
Confidence 2334444689999999885
No 159
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=90.55 E-value=1.5 Score=34.83 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=44.0
Q ss_pred hHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 12 FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
+....++|.+.|+++.+++...++.+++.||+|.-.... + ...+.|++++++|.-++.
T Consensus 28 ~~~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~-~------~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 28 ALALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLS-D------ATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCC-H------HHHHHHHHHHHCCCEEEE
Confidence 336778999999999999877788999999999853211 1 235788899998875554
No 160
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.51 E-value=1.3 Score=39.19 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=42.5
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH--cCC
Q 025812 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK 72 (247)
Q Consensus 1 m~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~--~g~ 72 (247)
|||+|+.. .. ...+.++|++.|+++ +..++|.+|.-||..+.+. .++.+.. .++
T Consensus 1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~-------~~~~~Dlvi~iGGDGT~L~----------a~~~~~~~~~~i 62 (265)
T PRK04885 1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFIL-------DEKNPDIVISVGGDGTLLS----------AFHRYENQLDKV 62 (265)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCcc-------CCcCCCEEEEECCcHHHHH----------HHHHhcccCCCC
Confidence 89999976 33 224556777788772 1246899999888765432 3344443 489
Q ss_pred cEEEEehhH
Q 025812 73 PVWGTCAGL 81 (247)
Q Consensus 73 PilGIC~G~ 81 (247)
|++||=.|.
T Consensus 63 PilGIN~G~ 71 (265)
T PRK04885 63 RFVGVHTGH 71 (265)
T ss_pred eEEEEeCCC
Confidence 999998775
No 161
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.45 E-value=1.8 Score=38.81 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=47.2
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--------------cCC-CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|+|+...+. ...+.++|++.|+++.+-... .++ .++|.+|.-||..+.+.
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~-------- 78 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLG-------- 78 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHH--------
Confidence 5999987664 235677898999987764321 122 35899999888765432
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
..+.+...++|++||=.|.
T Consensus 79 --aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 79 --AARVLARYDIKVIGINRGN 97 (292)
T ss_pred --HHHHhcCCCCeEEEEECCC
Confidence 2233334579999999887
No 162
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.19 E-value=1.8 Score=39.11 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=47.1
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc-----------------------cCC-CCCCEEEECCCchhHH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM 51 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-----------------------~~l-~~~d~lilpGG~~~~~ 51 (247)
+|+|+...+. ...+.++|++.|+++.+.... +++ +++|.+|.-||..+.+
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 86 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL 86 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence 5999987664 235677899999987764311 122 3589999988876543
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 52 ~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
. ..+.+...++|+|||=.|.
T Consensus 87 ~----------aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 87 R----------AAELARAADVPVLGVNLGH 106 (306)
T ss_pred H----------HHHHhccCCCcEEEEecCC
Confidence 2 2344445689999998774
No 163
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.00 E-value=1.8 Score=38.75 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=47.5
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--------------cCC-CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|+|+...+. ...++++|++.|+++.+.... +++ +.+|.+|.-||..+.+
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l--------- 77 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML--------- 77 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence 4899887664 346778899999987664321 122 3589999988876543
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
+.++.+...+.|+|||=.|.
T Consensus 78 -~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 78 -GIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -HHHHHhcCCCCCEEEEcCCC
Confidence 33344444689999998875
No 164
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=89.43 E-value=1.2 Score=37.62 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
....++|.++|+.+.+++..+++++|..||+|.-.- ++. ...+.|++++++|..++..+
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~--l~~-----~~~~~L~~yV~~GG~li~~~ 91 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYI--LSP-----EFAERLRAYVENGGTLILTP 91 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC----H-----HH---HHHHHT-SS-EEE-T
T ss_pred HHHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEE--ECh-----HHHHHHHHHHHCCCEEEEEc
Confidence 356789999999999999888999999999998432 110 13567889999876666443
No 165
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.42 E-value=2.1 Score=37.56 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=46.3
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
||++|+.-+.... .+.+.|.+.|.++.+..... ...++|.+|.-||..+.+.. ++.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~a----------~~~~---~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLKA----------AKKV---GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHHHH----------HHHc---CCCEEE
Confidence 9999997655433 56678888888766543322 23578999998887654332 2333 899999
Q ss_pred EehhH
Q 025812 77 TCAGL 81 (247)
Q Consensus 77 IC~G~ 81 (247)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 98775
No 166
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.32 E-value=1.9 Score=42.31 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=48.1
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEECCc---------------cCCCCCCEEEECCCchhHHHHHHhhCC
Q 025812 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKP---------------DQLQNVSSLIIPGGESTTMARLAEYHN 59 (247)
Q Consensus 1 m~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~---------------~~l~~~d~lilpGG~~~~~~~l~~~~~ 59 (247)
|||+|+...+. ...+.++|++.|.++.+.... .++.++|.+|.-||..+.+
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-------- 362 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL-------- 362 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence 78999987664 225677888899887764210 1234689999988876543
Q ss_pred HHHHHHHHHHcCCcEEEEehhH
Q 025812 60 LFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC~G~ 81 (247)
...+.+...++|+|||=.|.
T Consensus 363 --~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 363 --RASKLVNGEEIPIICINMGT 382 (569)
T ss_pred --HHHHHhcCCCCCEEEEcCCC
Confidence 23344445689999998774
No 167
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.81 E-value=2.9 Score=37.65 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=45.5
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc----------cCC-CCCCEEEECCCchhHHHHHHhhCCHHHHH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~----------~~l-~~~d~lilpGG~~~~~~~l~~~~~~~~~i 64 (247)
||+++.++|. ...+.++|++.|+++.+.... ... ..+|.+|.-||..+... .+
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~----------~~ 74 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLA----------AA 74 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHH----------HH
Confidence 5888888774 224667888899997764321 112 35899999888775432 22
Q ss_pred HHHHHcCCcEEEEeh
Q 025812 65 REFVKMGKPVWGTCA 79 (247)
Q Consensus 65 ~~~~~~g~PilGIC~ 79 (247)
+.+...++|++||=.
T Consensus 75 ~~~~~~~~pv~gin~ 89 (305)
T PRK02645 75 RHLAPHDIPILSVNV 89 (305)
T ss_pred HHhccCCCCEEEEec
Confidence 333346899999987
No 168
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.15 E-value=4.8 Score=33.95 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=48.6
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEE-EECCcc-----------------------CCCCCCEEEEC-C-CchhHHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGV-EIRKPD-----------------------QLQNVSSLIIP-G-GESTTMAR 53 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~-~~~~~~-----------------------~l~~~d~lilp-G-G~~~~~~~ 53 (247)
||||||.-.|...+ +++-....|.+|+ +++++. ++...|.||.. | +.++....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHH
Confidence 99999999999985 6677888899887 455431 34567888873 2 21222111
Q ss_pred HHhhCCHHHHHHHHHHc-CCcEEEEehhHH
Q 025812 54 LAEYHNLFPALREFVKM-GKPVWGTCAGLI 82 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~-g~PilGIC~G~Q 82 (247)
..+ -.+.|-+.+++ +.|-|=+-.|.-
T Consensus 81 ~~k---~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 81 HSK---SIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred HHH---HHHHHHHHHhhcCCeeEEEEcCcc
Confidence 111 13444444544 777777776643
No 169
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.80 E-value=0.86 Score=35.91 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=25.0
Q ss_pred cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH--cCCcEEEEeh
Q 025812 33 DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGKPVWGTCA 79 (247)
Q Consensus 33 ~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~--~g~PilGIC~ 79 (247)
+++.++|.+++-||-. |+.+. .-.+.+|+.++ .++|+.|+|+
T Consensus 81 e~~n~aDvvVLlGGLa--MP~~g---v~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLA--MPKIG---VTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccc--cCcCC---CCHHHHHHHHHhcCCCceEEeeH
Confidence 4567899999988842 11110 01233344444 4678999996
No 170
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=84.74 E-value=0.69 Score=40.46 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=64.6
Q ss_pred HHHHHHhCCCe-EEEE--CCcc---------CCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 15 HIAALKRLGVK-GVEI--RKPD---------QLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 15 ~~~~L~~~G~~-v~~~--~~~~---------~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
+++.++.+|++ +.++ ++.+ .+.++++|++.||.+.. ..-++ ++.+.+.|++.+..|.-+-|.-+|.
T Consensus 72 y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lk-dTpl~~~ir~r~r~G~avgGTSAGA 150 (293)
T COG4242 72 YIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLK-DTPLMAAIRQRVRRGIAVGGTSAGA 150 (293)
T ss_pred hhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeecc-CCHHHHHHHHHHhcCceecccccch
Confidence 34588888974 3333 3332 25789999999996532 23333 4678899999999999999999999
Q ss_pred HHHHHhhhccc-----CCC-----cccccceeeEEEe
Q 025812 82 IFLANKAVGQK-----LGG-----QELVGGLDCTVHR 108 (247)
Q Consensus 82 QlL~~~~~~~~-----~g~-----~~~LG~l~g~v~~ 108 (247)
.+|+..+...- +.. ..+||++++.+..
T Consensus 151 avM~~~mi~~g~s~~~pn~~~v~m~~glg~lp~~ivD 187 (293)
T COG4242 151 AVMSDHMIVAGDSGEYPNRELVDMGFGLGFLPGVIVD 187 (293)
T ss_pred hhcCCceEeccCCCCCCCcchhhhccccccccceeee
Confidence 99998764311 111 2578888887654
No 171
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.64 E-value=7.4 Score=34.53 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=41.3
Q ss_pred CEEEEEecCCCh------HHHHHHHHhCCCeEEEECCc-----------cCCCCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~------~~~~~~L~~~G~~v~~~~~~-----------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
|||+|+...+.- ..+.++| +.|+++.+.... .++ ++|.+|.-||..+.+...
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a~--------- 69 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRTL--------- 69 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHHH---------
Confidence 999999876541 2455666 458877664321 112 689999988876543322
Q ss_pred HHHHHHcCCcEEEEehh
Q 025812 64 LREFVKMGKPVWGTCAG 80 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G 80 (247)
+.+ ..|+|||=.|
T Consensus 70 -~~~---~~PilGIN~G 82 (271)
T PRK01185 70 -QRA---KGPILGINMG 82 (271)
T ss_pred -HHc---CCCEEEEECC
Confidence 221 3599999877
No 172
>PRK09271 flavodoxin; Provisional
Probab=84.51 E-value=8.4 Score=30.96 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred CEEEEEec--CCChH----HHHHHHHhCCCeEEEECC--------ccCCCCCCEEEECC-----C-chhHHHHHHhhCCH
Q 025812 1 MVVGVLAL--QGSFN----EHIAALKRLGVKGVEIRK--------PDQLQNVSSLIIPG-----G-ESTTMARLAEYHNL 60 (247)
Q Consensus 1 m~I~vl~~--~G~~~----~~~~~L~~~G~~v~~~~~--------~~~l~~~d~lilpG-----G-~~~~~~~l~~~~~~ 60 (247)
|||.|+-. .||-. .+.+.|+..|.++.+... ..++.++|.|+|+- | .++.+.. +
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~------f 74 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKR------F 74 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHH------H
Confidence 89888775 47755 355677788988765431 12455789998844 2 2322222 2
Q ss_pred HHHHHHHHHcCCcEEEEehh
Q 025812 61 FPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G 80 (247)
.+.+++...+++++.-++.|
T Consensus 75 ~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 75 IAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHhccCCeEEEEecC
Confidence 34444433356666666554
No 173
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.11 E-value=5.5 Score=37.92 Aligned_cols=30 Identities=27% Similarity=0.051 Sum_probs=26.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
|||+|+....+=.+.++.|.+.|+++.+.+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence 689999998777899999999999998875
No 174
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.69 E-value=5.9 Score=35.53 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=46.5
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--------------cCC-CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|+|+...+. ...+.++|++.|+++.+.... .++ +.+|.+|.-||..+.+..
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~------- 78 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGA------- 78 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHH-------
Confidence 5999987664 235667888889987764321 112 258899888887654322
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
++.+...+.|++||=.|.
T Consensus 79 ---~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 79 ---ARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHhcCCCCCEEEEeCCc
Confidence 233334689999998875
No 175
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.79 E-value=4.5 Score=32.00 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=33.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECCc-----------------------------cCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRKP-----------------------------DQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~-----------------------------~~l~~~d~lilpGG~ 47 (247)
|||+|+...|++. ++...|...+. ++..++.. +++.++|.+|++.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 8999999879888 45566666553 55554321 356889999999885
No 176
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.28 E-value=6.5 Score=34.66 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=39.0
Q ss_pred CEEEEEecCCChH-HHHHHHHh----CCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKR----LGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~----~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
||.++++.+-.-. ++.+.|++ .+. ..+++|.+|.-||..+.+ ..++.+...++|++
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPil 61 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKVV 61 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcEE
Confidence 8999999544322 34443433 321 235689999988876543 33344545789999
Q ss_pred EEehhH
Q 025812 76 GTCAGL 81 (247)
Q Consensus 76 GIC~G~ 81 (247)
||=.|.
T Consensus 62 GIN~G~ 67 (259)
T PRK00561 62 GINTGH 67 (259)
T ss_pred EEecCC
Confidence 998774
No 177
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=80.51 E-value=3 Score=24.90 Aligned_cols=26 Identities=8% Similarity=0.314 Sum_probs=16.2
Q ss_pred CEEEEEecCCChH-----------HHHHHHHhCCCeE
Q 025812 1 MVVGVLALQGSFN-----------EHIAALKRLGVKG 26 (247)
Q Consensus 1 m~I~vl~~~G~~~-----------~~~~~L~~~G~~v 26 (247)
||||||....|+. .+.+.++++|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 8999999755432 3457788888765
No 178
>PRK06756 flavodoxin; Provisional
Probab=79.52 E-value=8.6 Score=30.25 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=29.8
Q ss_pred CEEEEEec--CCChH----HHHHHHHhCCCeEEEECC-----ccCCCCCCEEEEC
Q 025812 1 MVVGVLAL--QGSFN----EHIAALKRLGVKGVEIRK-----PDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~----~~~~~L~~~G~~v~~~~~-----~~~l~~~d~lilp 44 (247)
|||.|+-. -||-. .+.+.|++.|+++.+++. ..++.++|.|++.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~g 56 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILG 56 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEE
Confidence 68888876 46655 345666777888776542 1356789999985
No 179
>PLN02929 NADH kinase
Probab=79.10 E-value=7.3 Score=35.15 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCeEEEECCc---cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 13 NEHIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~---~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
..+.+.|++.|+++..+... ..+.++|.+|.-||..+.+. ..+.+ ..++|++||=.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~----------aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQ----------ASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHH----------HHHHc-CCCCcEEEEECC
Confidence 35678999999998765332 23578999999888765432 22333 568999999988
No 180
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=79.09 E-value=15 Score=29.86 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEEEecCC--------ChHHHHHHHHhCCCeEEEE---CCc-c-------C---CCCCCEEEECCCc
Q 025812 2 VVGVLALQG--------SFNEHIAALKRLGVKGVEI---RKP-D-------Q---LQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G--------~~~~~~~~L~~~G~~v~~~---~~~-~-------~---l~~~d~lilpGG~ 47 (247)
||+|+.... |-..+..+|++.|+++..+ .+. + + ..++|.||.+||.
T Consensus 6 rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 6 RIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred EEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 677876432 3346778899999987643 332 1 1 2469999999974
No 181
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=78.72 E-value=5.7 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEE---CCcc---------CCCCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVEI---RKPD---------QLQNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~~---------~l~~~d~lilpGG~ 47 (247)
.+...|++.|+++... .+.. .+.++|.||.+||.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~ 76 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGT 76 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 5778899999987743 3221 13579999999974
No 182
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=78.28 E-value=10 Score=33.09 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=45.4
Q ss_pred EEEEEecCCCh-------------HHHHHHHHhCCCeEEEECC-ccCC-CCCCEEEECCCchhHHHHHHhhCCHHHHHHH
Q 025812 2 VVGVLALQGSF-------------NEHIAALKRLGVKGVEIRK-PDQL-QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 2 ~I~vl~~~G~~-------------~~~~~~L~~~G~~v~~~~~-~~~l-~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~ 66 (247)
+|+++.-.|.. ..+.+.|++. +++..++. ..++ +++|.||+.|-... +.. .-...|.+
T Consensus 148 ~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~~IP~~~d~Lvi~~P~~~-ls~-----~e~~~l~~ 220 (271)
T PF09822_consen 148 KVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANEEIPDDADVLVIAGPKTD-LSE-----EELYALDQ 220 (271)
T ss_pred eEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcccccCCCCCEEEEECCCCC-CCH-----HHHHHHHH
Confidence 57777755544 4788999999 98888765 3456 78999999874221 100 01467788
Q ss_pred HHHcCCcEE
Q 025812 67 FVKMGKPVW 75 (247)
Q Consensus 67 ~~~~g~Pil 75 (247)
|+++|.++|
T Consensus 221 yl~~GG~ll 229 (271)
T PF09822_consen 221 YLMNGGKLL 229 (271)
T ss_pred HHHcCCeEE
Confidence 888887754
No 183
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=78.18 E-value=5.7 Score=33.17 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=30.2
Q ss_pred CEEEEEecC--CChH----HHHHHHHh-CCCeEEEECCc------------------------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKR-LGVKGVEIRKP------------------------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~-~G~~v~~~~~~------------------------~~l~~~d~lilpG 45 (247)
|||+|+.++ ||.. .+.+.+++ .|+++++++-+ +++.++|+|||.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 77 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT 77 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe
Confidence 589999864 5544 35566766 78888765421 2456899998843
No 184
>PRK06703 flavodoxin; Provisional
Probab=78.12 E-value=8.7 Score=30.33 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=28.8
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECCc----cCCCCCCEEEE
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP----DQLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~~----~~l~~~d~lil 43 (247)
|||.|+-. .||-.. +.+.|+..|+++.+.+.. .++.++|.|+|
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEE
Confidence 57777775 466543 445667778887765422 25778999988
No 185
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=77.25 E-value=21 Score=26.92 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=43.8
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
||.|+...++.. .+...|.++|.++....+.+ .+.+-|.+|+-. |.... ..+.++.+.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~---------~~~~~~~a~~ 72 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE---------LLNLLPHLKR 72 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 567777655543 45566777888877664332 234567777643 43321 2455666777
Q ss_pred cCCcEEEEehh
Q 025812 70 MGKPVWGTCAG 80 (247)
Q Consensus 70 ~g~PilGIC~G 80 (247)
+|.|+++|+..
T Consensus 73 ~g~~vi~iT~~ 83 (128)
T cd05014 73 RGAPIIAITGN 83 (128)
T ss_pred CCCeEEEEeCC
Confidence 89999999964
No 186
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=75.82 E-value=12 Score=33.51 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=42.4
Q ss_pred EEEEEecC-C-ChHHHHHHHHhCC--CeEEEECCc-------c----------CC---CCCCEEEE--CCCchhHHHHHH
Q 025812 2 VVGVLALQ-G-SFNEHIAALKRLG--VKGVEIRKP-------D----------QL---QNVSSLII--PGGESTTMARLA 55 (247)
Q Consensus 2 ~I~vl~~~-G-~~~~~~~~L~~~G--~~v~~~~~~-------~----------~l---~~~d~lil--pGG~~~~~~~l~ 55 (247)
||||+.-+ | .+.++++.+++.+ +++.+++.. . .. ..+|.||| +||..+.+..+.
T Consensus 16 ~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN 95 (319)
T PF02601_consen 16 RIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFN 95 (319)
T ss_pred EEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccC
Confidence 79999954 3 3557888888875 455555432 0 11 25899988 667654433332
Q ss_pred hhCCHHHHHHHHHHcCCcEE
Q 025812 56 EYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~Pil 75 (247)
+ ....+..++...||+
T Consensus 96 ~----e~varai~~~~~Pvi 111 (319)
T PF02601_consen 96 D----EEVARAIAASPIPVI 111 (319)
T ss_pred h----HHHHHHHHhCCCCEE
Confidence 1 344555556788865
No 187
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.61 E-value=14 Score=32.64 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=41.6
Q ss_pred EEEEEecCCCh-----HHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH-cCCcEE
Q 025812 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-MGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~-----~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~-~g~Pil 75 (247)
+|+|+.....- ..+.++|++.|.++..- ..++|.+|.-||..+.+. ..+.+.. +..|++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~-----~~~~D~vi~lGGDGT~L~----------a~~~~~~~~~~pil 68 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH-----PKNANIIVSIGGDGTFLQ----------AVRKTGFREDCLYA 68 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC-----CCCccEEEEECCcHHHHH----------HHHHhcccCCCeEE
Confidence 57777754431 13556788889877642 256899999888765433 2233333 378999
Q ss_pred EEeh-h
Q 025812 76 GTCA-G 80 (247)
Q Consensus 76 GIC~-G 80 (247)
||=. |
T Consensus 69 gIn~~G 74 (264)
T PRK03501 69 GISTKD 74 (264)
T ss_pred eEecCC
Confidence 9988 6
No 188
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.61 E-value=19 Score=26.29 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=46.8
Q ss_pred EEEEec-CCChHHHHHHHHhCCCeEEEE------CCc-----cCCCCCCEEEECCCchh-HHHHHHhhCCHHHHHHH-HH
Q 025812 3 VGVLAL-QGSFNEHIAALKRLGVKGVEI------RKP-----DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALRE-FV 68 (247)
Q Consensus 3 I~vl~~-~G~~~~~~~~L~~~G~~v~~~------~~~-----~~l~~~d~lilpGG~~~-~~~~l~~~~~~~~~i~~-~~ 68 (247)
|+|+.- +.....+.+.+++.|++...+ ... ..+.++|.||++=++-+ .+ ...+++ +-
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~---------~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNA---------MWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHH---------HHHHHHHHH
Confidence 556553 345668889999999999988 111 24678899988544321 11 112222 23
Q ss_pred HcCCcEEEEe-hhHHHHHHhh
Q 025812 69 KMGKPVWGTC-AGLIFLANKA 88 (247)
Q Consensus 69 ~~g~PilGIC-~G~QlL~~~~ 88 (247)
+.++|++-.= .|..-|-+++
T Consensus 73 k~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 73 KYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred HcCCcEEEECCCCHHHHHHHH
Confidence 3589977554 5666665554
No 189
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=74.56 E-value=17 Score=34.29 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=48.4
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCc---------------------cCCCCCCEEEECCCchh---HHHHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGEST---TMARLA 55 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~lilpGG~~~---~~~~l~ 55 (247)
++|.|+...++=.+ +.++|.+.|++|...+.. +.+.++|.||++-|.+. .....+
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 36899998877667 799999999998876521 11346899998665321 122222
Q ss_pred hhCC-----HHHHHHHHHHcCCcEEEEehh
Q 025812 56 EYHN-----LFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 56 ~~~~-----~~~~i~~~~~~g~PilGIC~G 80 (247)
+ .+ -.+++.++.. ..|+.||..-
T Consensus 88 ~-~~i~i~~~~e~~~~~~~-~~~~I~ITGT 115 (461)
T PRK00421 88 E-LGIPVVRRAEMLAELMR-FRTSIAVAGT 115 (461)
T ss_pred H-CCCcEEeHHHHHHHHHc-cCcEEEEECC
Confidence 1 12 1344444443 4689999854
No 190
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=74.44 E-value=11 Score=30.07 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=29.7
Q ss_pred CEEEEEecCC-------------C--hHHH----HHHHHhCCCeEEEECCcc----------CCCCCCEEEE-CCCch
Q 025812 1 MVVGVLALQG-------------S--FNEH----IAALKRLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (247)
Q Consensus 1 m~I~vl~~~G-------------~--~~~~----~~~L~~~G~~v~~~~~~~----------~l~~~d~lil-pGG~~ 48 (247)
|||.||.-++ + +.++ .+..+++|+++..+.+.. ...++|++|+ ||++.
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~t 78 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYT 78 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGG
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhc
Confidence 8999998543 2 3334 345555678888775432 1356999999 99864
No 191
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=74.42 E-value=6.1 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=31.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCc---------------------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~lilpG 45 (247)
|||+|+. .|++. ++.++|++.|+++.-+... +.+.++|.++|.=
T Consensus 11 l~I~iIG-aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 11 LKIGIIG-AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV 76 (127)
T ss_dssp -EEEEEC-TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S
T ss_pred cEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe
Confidence 7899999 58887 7889999999998765321 1146789999963
No 192
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=73.71 E-value=9.1 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=29.6
Q ss_pred CEEEEEec--CCChHH----HHHHHHhC-CCeEEEECCc------------------------cCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRL-GVKGVEIRKP------------------------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~-G~~v~~~~~~------------------------~~l~~~d~lilpG 45 (247)
|||+|+-. .||... +.+.+++. |+++++++.+ +++.++|+||+.-
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS 76 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT 76 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe
Confidence 68988886 466554 34456555 8888765422 2346789999954
No 193
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=73.35 E-value=11 Score=33.41 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCe-----EEEEC--------Cc-----------cCC--CCCCEEEECCCchhH----
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVK-----GVEIR--------KP-----------DQL--QNVSSLIIPGGESTT---- 50 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~-----v~~~~--------~~-----------~~l--~~~d~lilpGG~~~~---- 50 (247)
||+||...=+-. .=.+.|+-+|.. ++.++ ++ +++ .++||+|++|.+-+.
T Consensus 37 ~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve~l~fe 116 (307)
T COG1897 37 KILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVELLPFE 116 (307)
T ss_pred eeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCCcccccCch
Confidence 688888755433 333566666753 33221 11 122 479999999964221
Q ss_pred -HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 51 -MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 51 -~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
.+...+-..+.++-+. .=.-.|-||.|.|.--..+
T Consensus 117 eV~YW~el~~I~eWskt---~V~STl~ICWgaqAaly~~ 152 (307)
T COG1897 117 EVAYWEELKQIFEWSKT---HVTSTLHICWGAQAALYYF 152 (307)
T ss_pred hhhhHHHHHHHHHHHhh---cchhhhhhHHHHHHHHHHH
Confidence 1111110112233332 2256789999999876665
No 194
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=73.19 E-value=8.7 Score=36.19 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=32.5
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECCcc---------CCCCCCEEEECCC
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKPD---------QLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~~~---------~l~~~d~lilpGG 46 (247)
|||+|+... | |-..+.+.|++.|+++.. +.+.. -+..+|.||++||
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGG 68 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGG 68 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999763 3 333577889999998763 33321 1357999999997
No 195
>PRK03673 hypothetical protein; Provisional
Probab=73.08 E-value=9.5 Score=35.76 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=31.6
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCC
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG 46 (247)
||++|+... | |-.-+.+.|++.|+++... .+. + -+..+|.||++||
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCC
Confidence 688888863 2 2335678899999987643 332 1 1357999999996
No 196
>PRK06444 prephenate dehydrogenase; Provisional
Probab=72.65 E-value=9 Score=32.29 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=31.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCccCCCCCCEEEEC
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~l~~~d~lilp 44 (247)
|||+|+.-.|.... +.+.|++.|+.+. +.++|.+||.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------~~~~DlVila 38 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------IKKADHAFLS 38 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------ECCCCEEEEe
Confidence 89999998788884 6789999999976 4789999996
No 197
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.80 E-value=14 Score=32.81 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCeEEEECCc--------------cCC-CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 13 NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
..+.++|++.|+++.+-... +++ ..+|.+|.-||..+.+. ..+.+...++|+|||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~----------aa~~~~~~~~PilgI 72 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDGNMLG----------RARVLAKYDIPLIGI 72 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcHHHHH----------HHHHhccCCCcEEEE
Confidence 45678899999988764321 222 25899999888765432 234444468999999
Q ss_pred ehh
Q 025812 78 CAG 80 (247)
Q Consensus 78 C~G 80 (247)
=.|
T Consensus 73 n~G 75 (272)
T PRK02231 73 NRG 75 (272)
T ss_pred eCC
Confidence 877
No 198
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=71.63 E-value=16 Score=32.11 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=31.5
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECC-ccC--------CCCCCEEEECCC
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRK-PDQ--------LQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~-~~~--------l~~~d~lilpGG 46 (247)
|+.+||... | |..-+.+.|.+.|+++.. +.+ +++ .+.+|.||++||
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 566777652 3 445688999999997764 333 221 356999999997
No 199
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=71.08 E-value=22 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=28.2
Q ss_pred CEEEEEec--CCChHHH----HHHHHhCCCeEE-EECC------ccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNEH----IAALKRLGVKGV-EIRK------PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~----~~~L~~~G~~v~-~~~~------~~~l~~~d~lilpG 45 (247)
|||.|+-. .||-..+ .+.|+..|+++. +++. +.++.++|.|||.-
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGT 58 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEc
Confidence 88888775 4775544 455556677775 2221 12456789998854
No 200
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=70.34 E-value=25 Score=28.31 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=30.3
Q ss_pred CEEEEEecCC---------------ChHHHHHHH----HhCCCeEEEECCcc----------CCCCCCEEEE-CCCch
Q 025812 1 MVVGVLALQG---------------SFNEHIAAL----KRLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (247)
Q Consensus 1 m~I~vl~~~G---------------~~~~~~~~L----~~~G~~v~~~~~~~----------~l~~~d~lil-pGG~~ 48 (247)
|||.||.-+. ++.++.+.+ +++|+++..+.+.. ..+++|++|| ||++.
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 7888887432 344554444 44588888775431 1246899999 88764
No 201
>PRK00549 competence damage-inducible protein A; Provisional
Probab=69.31 E-value=12 Score=35.24 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=32.1
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECCc-c--------CCCCCCEEEECCC
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~~-~--------~l~~~d~lilpGG 46 (247)
||++||... | |-..+.+.|++.|+++.. +.+. + -..++|.||++||
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGG 68 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGG 68 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCC
Confidence 888888752 3 233577899999998764 3332 1 1357899999996
No 202
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=69.17 E-value=27 Score=27.58 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=41.8
Q ss_pred CEEEEEecCCChHHHHHHHHhC---CC--eEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRL---GV--KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~---G~--~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
++|||+.. ..+...++.++.. |- .+..+++..++..||.|++..+....... .+ +.+ .+.|+|
T Consensus 28 ~~icv~g~-~~~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~~~~~~~---------i~-~~~-~~~~vL 95 (145)
T PF13689_consen 28 FRICVLGD-DPFAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSESSQLPE---------IL-RKL-PGKPVL 95 (145)
T ss_pred eEEEEECC-hHHHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCChHHHHH---------HH-Hhc-CCCceE
Confidence 36888884 3355444444321 32 34445566678999999998876533221 22 222 488999
Q ss_pred EEehhHH
Q 025812 76 GTCAGLI 82 (247)
Q Consensus 76 GIC~G~Q 82 (247)
=|+-+-.
T Consensus 96 tIsd~~~ 102 (145)
T PF13689_consen 96 TISDGEG 102 (145)
T ss_pred EEECCCC
Confidence 9987644
No 203
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=69.12 E-value=16 Score=29.86 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=41.4
Q ss_pred hHHHHHHHHhCCCeEEE---ECCcc---------CCCCCCEEEECCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 12 FNEHIAALKRLGVKGVE---IRKPD---------QLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~---~~~~~---------~l~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
-..+.++|++.|+++.. +.+.. -++.+|.||.+||.. +..+. ..+.+++++ ++++.+.=
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~------t~ea~~~~~--~~~l~~~~ 92 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDL------TREAVAKAF--GRPLVLDE 92 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCCh------HHHHHHHHh--CCCcccCH
Confidence 34677899999998764 33321 135789999999742 11111 134555554 66666666
Q ss_pred hhHHHHHHhh
Q 025812 79 AGLIFLANKA 88 (247)
Q Consensus 79 ~G~QlL~~~~ 88 (247)
--.+.|-+.+
T Consensus 93 e~~~~i~~~~ 102 (170)
T cd00885 93 EALERIEARF 102 (170)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 204
>PRK06242 flavodoxin; Provisional
Probab=68.92 E-value=20 Score=27.95 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=30.5
Q ss_pred CEEEEEecC---CChHHHHHHHHh-CCCeEEEECC--ccCCCCCCEEEECC
Q 025812 1 MVVGVLALQ---GSFNEHIAALKR-LGVKGVEIRK--PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~---G~~~~~~~~L~~-~G~~v~~~~~--~~~l~~~d~lilpG 45 (247)
||+.|+-+. ||-..+++.+.+ +++++..+.. ..++.++|.||+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~ 51 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGS 51 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeC
Confidence 888777763 787777776644 4666554432 23578999999965
No 205
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=67.66 E-value=15 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred hHHHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCCc
Q 025812 12 FNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG~ 47 (247)
-..+.++|++.|+++... .+. + .++++|.||.+||.
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~ 68 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGT 68 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCC
Confidence 335678899999987654 222 1 13569999999974
No 206
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=67.32 E-value=26 Score=30.43 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=41.0
Q ss_pred EEEEEe-cCCChH-HHHHHHHhCCCeEEEECC-------------cc---------CCCCCCEEEECCC-chhHHHHHHh
Q 025812 2 VVGVLA-LQGSFN-EHIAALKRLGVKGVEIRK-------------PD---------QLQNVSSLIIPGG-ESTTMARLAE 56 (247)
Q Consensus 2 ~I~vl~-~~G~~~-~~~~~L~~~G~~v~~~~~-------------~~---------~l~~~d~lilpGG-~~~~~~~l~~ 56 (247)
||+|+. |...+. .+.++|++.|++++-+.. ++ +..++|+|++++. ... .+.
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt-~~v--- 197 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRA-ATC--- 197 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh-HHH---
Confidence 788888 455555 477899999999875421 11 1357899999873 332 121
Q ss_pred hCCHHHHHHHHHHcCCcEEEE
Q 025812 57 YHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGI 77 (247)
.+.+.+. -|+|++-.
T Consensus 198 ----i~~lE~~--lGkPVlsS 212 (239)
T TIGR02990 198 ----AQRIEQA--IGKPVVTS 212 (239)
T ss_pred ----HHHHHHH--HCCCEEEH
Confidence 2333332 38999864
No 207
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=67.27 E-value=37 Score=29.82 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=32.6
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEECC--cc-------CC--CCCCEEEECCCchhH
Q 025812 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------QL--QNVSSLIIPGGESTT 50 (247)
Q Consensus 1 m~I~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~l--~~~d~lilpGG~~~~ 50 (247)
+|++|+.++ |+ ...+.+.|++.|.++.+... .. +. .++|.||+-||..+.
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 278888886 64 22567788899988765432 21 11 357899998876543
No 208
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=66.87 E-value=39 Score=27.19 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=30.5
Q ss_pred CEEEEEecCC---------------ChHHHHHHH----HhCCCeEEEECCcc----------CCCCCCEEEE-CCCch
Q 025812 1 MVVGVLALQG---------------SFNEHIAAL----KRLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (247)
Q Consensus 1 m~I~vl~~~G---------------~~~~~~~~L----~~~G~~v~~~~~~~----------~l~~~d~lil-pGG~~ 48 (247)
|||.||.-+. ++.++.+.+ ++.|.++..+.+.. ...++|++|| ||++.
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 5788887432 344555444 44588888775421 1246899999 88864
No 209
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=66.81 E-value=30 Score=32.53 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCeEEEEC---Cc-c--------CCCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~lilpGG~~ 48 (247)
-+..+|++.|++++... +. + -+.++|.||.+||.+
T Consensus 207 ~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S 253 (404)
T COG0303 207 MLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVS 253 (404)
T ss_pred HHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCcc
Confidence 57789999999887543 22 1 145799999999854
No 210
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=66.77 E-value=27 Score=33.85 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=44.2
Q ss_pred EEEEEecCCC------hHHHHHHHH-hCCCeEEEECCc--------------------cC---C-CCCCEEEECCCchhH
Q 025812 2 VVGVLALQGS------FNEHIAALK-RLGVKGVEIRKP--------------------DQ---L-QNVSSLIIPGGESTT 50 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~-~~G~~v~~~~~~--------------------~~---l-~~~d~lilpGG~~~~ 50 (247)
+|+|+...+. ...+.++|+ ..|+++.+-... .+ + .++|.+|.-||..+.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDGTl 275 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTV 275 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcHHH
Confidence 6888887664 235667787 477777653210 11 2 358999998887654
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 51 ~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
+. ..+.+...+.|||||=.|
T Consensus 276 L~----------Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 276 LW----------AASMFKGPVPPVVPFSMG 295 (508)
T ss_pred HH----------HHHHhccCCCcEEEEeCC
Confidence 32 233444467999999866
No 211
>PRK01215 competence damage-inducible protein A; Provisional
Probab=65.73 E-value=25 Score=31.01 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=30.5
Q ss_pred EEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECCc-cC--------CCCCCEEEECCCc
Q 025812 2 VVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~~-~~--------l~~~d~lilpGG~ 47 (247)
|++|+... | |-..+.+.|++.|+++.. +.+. ++ +..+|.||++||.
T Consensus 5 ~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 5 FAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred EEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 77887753 2 233577889999998753 3332 21 3468999999973
No 212
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=65.63 E-value=14 Score=32.85 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.0
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+||.-+-+.. .+.+++++.|+++..+..
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~ 34 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDP 34 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEeh
Confidence 9999999655533 588999999999988763
No 213
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.40 E-value=34 Score=31.91 Aligned_cols=29 Identities=10% Similarity=-0.109 Sum_probs=25.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
|||.|+...++=.++++.|+ .|++|...+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEc
Confidence 89999999877669999999 999988775
No 214
>PRK03670 competence damage-inducible protein A; Provisional
Probab=65.26 E-value=18 Score=31.72 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=31.0
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEEE---CCcc--------C-CC-CCCEEEECCC
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKPD--------Q-LQ-NVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~~---~~~~--------~-l~-~~d~lilpGG 46 (247)
|+++||... | |...+.+.|++.|+++..+ .+.. . +. .+|.||++||
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGG 69 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGG 69 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCC
Confidence 788888752 2 3345778899999987643 3321 1 23 4799999997
No 215
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=64.57 E-value=12 Score=33.11 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=44.3
Q ss_pred EEEEEecCCC------hHHHHHHHHhC-CCeEEEECC-------------------------------cc--CCCCCCEE
Q 025812 2 VVGVLALQGS------FNEHIAALKRL-GVKGVEIRK-------------------------------PD--QLQNVSSL 41 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~-G~~v~~~~~-------------------------------~~--~l~~~d~l 41 (247)
||+|+.++.. ...+.++|++. +..+..-.. .. ...++|.+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 7999998773 33678899988 655544110 00 13689999
Q ss_pred EECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 42 ilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
|.-||..+.+.. .+.+...+.|++||=.|.
T Consensus 81 i~lGGDGT~L~~----------~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 81 IVLGGDGTFLRA----------ARLFGDYDIPILGINTGT 110 (285)
T ss_dssp EEEESHHHHHHH----------HHHCTTST-EEEEEESSS
T ss_pred EEECCCHHHHHH----------HHHhccCCCcEEeecCCC
Confidence 998887654322 233333589999998774
No 216
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=63.71 E-value=19 Score=28.66 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=24.6
Q ss_pred hHHHHHHHHhCCCeEEEE---CCc-cC--------CC--CCCEEEECCCc
Q 025812 12 FNEHIAALKRLGVKGVEI---RKP-DQ--------LQ--NVSSLIIPGGE 47 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~---~~~-~~--------l~--~~d~lilpGG~ 47 (247)
-.-+.++|++.|+++... .+. ++ ++ .+|.||.+||.
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 71 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGT 71 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 335778899999987643 332 11 23 69999999974
No 217
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=63.48 E-value=22 Score=30.46 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCeEEEE--CCcc------CCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 14 EHIAALKRLGVKGVEI--RKPD------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~--~~~~------~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+...|++.|++|++. .+++ .|.++|+||+-+ +.+. +.. ...+.+.+++++|+-++|+=.|+
T Consensus 27 ~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~-l~~-----eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 27 TIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDE-VKD-----EIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCc-CCH-----HHHHHHHHHHHcCCCEEEECCCc
Confidence 4668999999998843 2322 478999999833 2111 110 12456788899999999998776
No 218
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=63.16 E-value=19 Score=31.81 Aligned_cols=42 Identities=26% Similarity=0.262 Sum_probs=30.6
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCeEEEECCcc-------CCCCCCEEEE
Q 025812 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEIRKPD-------QLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G----------~~~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lil 43 (247)
|||+||-- | +-..+.++|++.|++++.+.... .+.++|.++.
T Consensus 1 ~~v~v~~g-g~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLMG-GVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEeC-CCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 89999983 3 13368899999999998876443 2356897765
No 219
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=60.98 E-value=65 Score=23.83 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred EEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cch
Q 025812 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GES 48 (247)
Q Consensus 2 ~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~~ 48 (247)
|+.|..+....+ .+...|++.|++.+- +.+++|.+|+-- +..
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~-----~~e~AD~iiiNTC~V~ 48 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVD-----DPEEADVIIINTCTVR 48 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeec-----ccccCCEEEEEcCCCC
Confidence 577888865433 367889999987652 236889999944 643
No 220
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.74 E-value=43 Score=31.67 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=42.6
Q ss_pred EEEEEecC-CC-hHHHHHHHHhCC--CeEEEECCcc-----------------CCCCCCEEEE--CCCchhHHHHHHhhC
Q 025812 2 VVGVLALQ-GS-FNEHIAALKRLG--VKGVEIRKPD-----------------QLQNVSSLII--PGGESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~-G~-~~~~~~~L~~~G--~~v~~~~~~~-----------------~l~~~d~lil--pGG~~~~~~~l~~~~ 58 (247)
||||+.-+ |. +.++++.+++.. +++.+++..- ...++|.||+ +||.-+.+-.+.+
T Consensus 131 ~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~-- 208 (432)
T TIGR00237 131 RVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFND-- 208 (432)
T ss_pred EEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCc--
Confidence 79999953 43 558888888764 5666655320 1234899988 6665544322221
Q ss_pred CHHHHHHHHHHcCCcEE
Q 025812 59 NLFPALREFVKMGKPVW 75 (247)
Q Consensus 59 ~~~~~i~~~~~~g~Pil 75 (247)
.+..+..++..+||+
T Consensus 209 --e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 209 --EKVARAIFLSKIPII 223 (432)
T ss_pred --HHHHHHHHcCCCCEE
Confidence 244555555688876
No 221
>PRK05569 flavodoxin; Provisional
Probab=60.06 E-value=19 Score=27.89 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=28.6
Q ss_pred EEEEEecC--CChHHH----HHHHHhCCCeEEEECCc----cCCCCCCEEEECC
Q 025812 2 VVGVLALQ--GSFNEH----IAALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~--G~~~~~----~~~L~~~G~~v~~~~~~----~~l~~~d~lilpG 45 (247)
||.|+-+. ||-..+ .+.+++.|+++.+.+.. .++.++|+|+|.-
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGS 56 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEEC
Confidence 77777764 565544 45555578887765432 2567899999943
No 222
>PLN02727 NAD kinase
Probab=59.84 E-value=31 Score=35.83 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=45.3
Q ss_pred EEEEEecCCC-----hHHHHHHHHhC-CCeEEEECCc---------------------cCC-CCCCEEEECCCchhHHHH
Q 025812 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIRKP---------------------DQL-QNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 2 ~I~vl~~~G~-----~~~~~~~L~~~-G~~v~~~~~~---------------------~~l-~~~d~lilpGG~~~~~~~ 53 (247)
+|+|+.-.+. ...+.++|.+. |+++.+-... .++ ..+|.+|.-||..+.+.
T Consensus 680 tVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLr- 758 (986)
T PLN02727 680 TVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILH- 758 (986)
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHH-
Confidence 6888886554 22567888887 8877652111 112 25899999888765432
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
..+.+...+.|||||=+|.
T Consensus 759 ---------Aar~~~~~~iPILGINlGr 777 (986)
T PLN02727 759 ---------ASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ---------HHHHhcCCCCCEEEEeCCC
Confidence 3344444689999998774
No 223
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=57.69 E-value=48 Score=31.55 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=43.5
Q ss_pred EEEEEecC-CC-hHHHHHHHHhCC--CeEEEECCc-----------------cCCCCCCEEEE--CCCchhHHHHHHhhC
Q 025812 2 VVGVLALQ-GS-FNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLII--PGGESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~-G~-~~~~~~~L~~~G--~~v~~~~~~-----------------~~l~~~d~lil--pGG~~~~~~~l~~~~ 58 (247)
+|||+.-+ |. ..++++.+++.- +++.+++.. ....++|.||+ +||.-+.+=.+.+
T Consensus 137 ~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNd-- 214 (440)
T COG1570 137 KIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFND-- 214 (440)
T ss_pred eEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccCh--
Confidence 69999853 44 448888888773 566665532 13467999999 5565433211211
Q ss_pred CHHHHHHHHHHcCCcEE
Q 025812 59 NLFPALREFVKMGKPVW 75 (247)
Q Consensus 59 ~~~~~i~~~~~~g~Pil 75 (247)
....|...+..+||.
T Consensus 215 --E~vaRAi~~s~iPvI 229 (440)
T COG1570 215 --EIVARAIAASRIPVI 229 (440)
T ss_pred --HHHHHHHHhCCCCeE
Confidence 245566666789976
No 224
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.93 E-value=60 Score=28.77 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=32.2
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEECC--cc-------C--CCCCCEEEECCCchhH
Q 025812 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------Q--LQNVSSLIIPGGESTT 50 (247)
Q Consensus 1 m~I~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~--l~~~d~lilpGG~~~~ 50 (247)
||+.++.++ |+ ...+.+.|++.|.++.++.. +. + ...+|.||+.||..+.
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 478887773 32 22577889999988765432 21 1 2467999998876543
No 225
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=56.90 E-value=53 Score=30.93 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=41.7
Q ss_pred EEEEEecC-CC-hHHHHHHHHhCC--CeEEEECCcc--------------CCC--CCCEEEE--CCCchhHHHHHHhhCC
Q 025812 2 VVGVLALQ-GS-FNEHIAALKRLG--VKGVEIRKPD--------------QLQ--NVSSLII--PGGESTTMARLAEYHN 59 (247)
Q Consensus 2 ~I~vl~~~-G~-~~~~~~~L~~~G--~~v~~~~~~~--------------~l~--~~d~lil--pGG~~~~~~~l~~~~~ 59 (247)
||||+.-+ |. +.++.+.+++.. +++.+++..- .+. .+|.||| +||.-+.+-.+.+
T Consensus 137 ~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~--- 213 (438)
T PRK00286 137 RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFND--- 213 (438)
T ss_pred EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc---
Confidence 79999953 43 557888777774 5666665321 122 2799988 6675443322221
Q ss_pred HHHHHHHHHHcCCcEE
Q 025812 60 LFPALREFVKMGKPVW 75 (247)
Q Consensus 60 ~~~~i~~~~~~g~Pil 75 (247)
.+.++..++..+||+
T Consensus 214 -e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 214 -EAVARAIAASRIPVI 228 (438)
T ss_pred -HHHHHHHHcCCCCEE
Confidence 345555555788976
No 226
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.80 E-value=46 Score=31.63 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=22.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||+|+...-+=.+..+.|.+.|+++++.+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence 68888874344578899999999988765
No 227
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=56.45 E-value=36 Score=28.62 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=29.0
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCe---E--EEECCcc--------C-C--CCCCEEEECCCc
Q 025812 1 MVVGVLALQG----------SFNEHIAALKRLGVK---G--VEIRKPD--------Q-L--QNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G----------~~~~~~~~L~~~G~~---v--~~~~~~~--------~-l--~~~d~lilpGG~ 47 (247)
||++||.... |-..+..+|++.|++ + .++++.. + + .++|.||.+||.
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 4788886532 233577889999653 2 2333321 1 2 269999999974
No 228
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=55.91 E-value=42 Score=27.25 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=41.2
Q ss_pred cCCChHHHHHHHHhC-CC-eEEEECCccC-CCCCCEEEECCCchh--HHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 8 LQGSFNEHIAALKRL-GV-KGVEIRKPDQ-LQNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 8 ~~G~~~~~~~~L~~~-G~-~v~~~~~~~~-l~~~d~lilpGG~~~--~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
--||..-+.+++.+. +. ++..+....+ +.++|.|+++.+.+. ... .+.++|++.-.+.+-++|+|..
T Consensus 7 ~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~------~~~~fl~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDK------DMKEFLKKLKGKKVALFGTAGA 78 (160)
T ss_pred CCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCH------HHHHHHHHccCCeEEEEEecCC
Confidence 468988888777664 65 5555554444 889999999875321 111 1234455543356677788854
No 229
>PRK09267 flavodoxin FldA; Validated
Probab=55.82 E-value=38 Score=27.11 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=27.9
Q ss_pred CEEEEEec--CCChHHHHHHHHhC-C-CeEEEEC--C--ccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKRL-G-VKGVEIR--K--PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~~-G-~~v~~~~--~--~~~l~~~d~lilpG 45 (247)
|||+|+-. .||...+.+.+.+. + .++.++. . ..++.++|.||+..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~~~d~vi~g~ 54 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGI 54 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHhhCCEEEEEe
Confidence 68988876 47777766655443 2 2334332 2 23567899999964
No 230
>PRK10949 protease 4; Provisional
Probab=54.99 E-value=40 Score=33.53 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCCCEEEE----CCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh-----hHHHHHHhh
Q 025812 36 QNVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA-----GLIFLANKA 88 (247)
Q Consensus 36 ~~~d~lil----pGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~-----G~QlL~~~~ 88 (247)
++..+||| |||.....+.+ .+.|+++.+.+||+.+-+. |.++++.+.
T Consensus 363 ~~vkaVvLrInSpGGs~~ase~i------~~~i~~~r~~gKPVvas~~~~aASggY~iA~aa 418 (618)
T PRK10949 363 PKVKAIVLRVNSPGGSVTASEVI------RAELAAARAAGKPVVVSMGGMAASGGYWISTPA 418 (618)
T ss_pred CCCcEEEEEecCCCCcHHHHHHH------HHHHHHHHhcCCcEEEEECCCCccHHHHHHHhc
Confidence 45667777 67765443333 4556565567999998553 556666654
No 231
>PRK12359 flavodoxin FldB; Provisional
Probab=54.89 E-value=33 Score=28.24 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=29.1
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCCe-EEEEC----CccCCCCCCEEEEC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGVK-GVEIR----KPDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~~-v~~~~----~~~~l~~~d~lilp 44 (247)
|||+|+-. -||-..+++.+.+ +|.+ +.++. .++++.++|.||+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD~iIlG 52 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILG 52 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHccCCEEEEE
Confidence 99999886 4777777776644 4653 23322 12357789999984
No 232
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=54.51 E-value=62 Score=28.68 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=44.4
Q ss_pred CEEEEEecCCCh------HHHHHHHHhCCCeEEEECCcc------------CCCCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKPD------------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 1 m~I~vl~~~G~~------~~~~~~L~~~G~~v~~~~~~~------------~l~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
|+|+|..-...- ..+...++..+.++....... +.+.+|.++.-||..+.+ .
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL----------~ 70 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTLL----------R 70 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHHHH----------H
Confidence 678777765542 246677777777766543211 124688888888765433 2
Q ss_pred HHHHHHHcCCcEEEEehh
Q 025812 63 ALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 63 ~i~~~~~~g~PilGIC~G 80 (247)
..+.+.+.++|++||=.|
T Consensus 71 ~~~~~~~~~~pilgin~G 88 (281)
T COG0061 71 AARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHhccCCCCEEEEeCC
Confidence 334444567999999998
No 233
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.38 E-value=70 Score=30.11 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=24.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||.|+...|.=.+.+++|.+.|++|...+
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D 39 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWD 39 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEC
Confidence 68999987776677999999999887765
No 234
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=54.27 E-value=42 Score=31.53 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=42.4
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEECC---------------------ccCCCCCCEEEECCCchhH---HHHHHh-
Q 025812 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRK---------------------PDQLQNVSSLIIPGGESTT---MARLAE- 56 (247)
Q Consensus 3 I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~---------------------~~~l~~~d~lilpGG~~~~---~~~l~~- 56 (247)
|.++...|.=-+ +.+.|.+.|++|...+. ++.+.++|.||.+-|.+.. ....++
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 556666555444 77888888887766542 1124468999986653211 222211
Q ss_pred hCC---HHHHHHHHHHcCCcEEEEehh
Q 025812 57 YHN---LFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 57 ~~~---~~~~i~~~~~~g~PilGIC~G 80 (247)
... -.+++.++.. ..|+.||..-
T Consensus 82 ~i~v~~~~el~~~~~~-~~~~IaITGT 107 (448)
T TIGR01082 82 GIPVIRRAEMLAELMR-FRHSIAVAGT 107 (448)
T ss_pred CCceEeHHHHHHHHHh-cCcEEEEECC
Confidence 111 1345545443 5688888754
No 235
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.45 E-value=47 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=22.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||+|+...+.=.++.+.|.+.|++|...+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence 68888876555588888999998877665
No 236
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=53.45 E-value=25 Score=33.77 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=47.5
Q ss_pred CEEEEEecCCCh--HHHHHHHHhCCCeEEEECCcc--C-CCCCCEEEECCCc----hhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKPD--Q-LQNVSSLIIPGGE----STTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~--~~~~~~L~~~G~~v~~~~~~~--~-l~~~d~lilpGG~----~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|||.|++-.-++ +.+++.|...|++++++.-.. - ..+.+.|+|++.. ...|.+.- ......+.+ +.+
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~G--Ta~valvAn--a~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVG--TACVALVAN--AFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcc--hHHHHHHhc--ccC
Confidence 577888853333 367899999999888765332 1 3567778887631 12232210 112223332 358
Q ss_pred CcEEEEehhHHHH
Q 025812 72 KPVWGTCAGLIFL 84 (247)
Q Consensus 72 ~PilGIC~G~QlL 84 (247)
+|+|-.|--+-+.
T Consensus 462 VPVlVCCE~yKF~ 474 (556)
T KOG1467|consen 462 VPVLVCCEAYKFH 474 (556)
T ss_pred CCEEEEechhhhh
Confidence 9999999776543
No 237
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=53.35 E-value=54 Score=32.01 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=43.0
Q ss_pred EEEEEecCCCh-----HHHHHHHHhCCCeEEEECC----------ccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHH
Q 025812 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRK----------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 2 ~I~vl~~~G~~-----~~~~~~L~~~G~~v~~~~~----------~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~ 66 (247)
+|+++.-.|.. ..+.+.|+ .++++..++. +++|.++|+||+.+-..+ +.. .-...|.+
T Consensus 185 ~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~-ls~-----~e~~~Ldq 257 (552)
T TIGR03521 185 RIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEA-FSE-----REKYILDQ 257 (552)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCcc-CCH-----HHHHHHHH
Confidence 58888876643 35667777 6777765432 223458999999873211 100 01467789
Q ss_pred HHHcCCcEEEE
Q 025812 67 FVKMGKPVWGT 77 (247)
Q Consensus 67 ~~~~g~PilGI 77 (247)
|+.+|.++|-.
T Consensus 258 fl~~GG~ll~~ 268 (552)
T TIGR03521 258 YIMNGGKALFL 268 (552)
T ss_pred HHHcCCeEEEE
Confidence 99988886643
No 238
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=52.89 E-value=38 Score=30.10 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.8
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECCc---------------c-CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP---------------D-QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~---------------~-~l~~~d~lilpG 45 (247)
++|+||. |+.. .+.+.|.+.|+++..+-.+ + .+.++|.||+|=
T Consensus 2 ~~~~v~g--gd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 2 IHIAVIG--GDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred cEEEEEc--ccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECC
Confidence 4688887 6655 6889999999998876332 1 257899999953
No 239
>PRK05568 flavodoxin; Provisional
Probab=52.55 E-value=33 Score=26.49 Aligned_cols=44 Identities=7% Similarity=0.148 Sum_probs=28.5
Q ss_pred EEEEEec--CCChHH----HHHHHHhCCCeEEEECCcc----CCCCCCEEEECC
Q 025812 2 VVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKPD----QLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~~~----~l~~~d~lilpG 45 (247)
+|.|+-+ .||-.. +.+.+++.|++++++...+ ++.++|.|+|.-
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGS 56 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEEC
Confidence 4666665 466554 4455566788877764322 567899999954
No 240
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=51.93 E-value=19 Score=31.44 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=27.8
Q ss_pred CCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 34 ~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
+++++|.+|.-||..+.+ ..++.+...++|+|||=.|.
T Consensus 22 ~~~~~Dlvi~iGGDGTlL----------~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDGFML----------QTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCHHHH----------HHHHHhcCCCCeEEEEeCCC
Confidence 556789999988876543 33455555689999998775
No 241
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=51.91 E-value=37 Score=32.08 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG~~ 48 (247)
.+...|++.|+++... .+. + -++++|.||++||..
T Consensus 224 ~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 224 MLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred HHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 4667899999987643 222 1 135799999999753
No 242
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=51.58 E-value=31 Score=30.71 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=34.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc--C----CCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD--Q----LQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~--~----l~~~d~lilpG 45 (247)
|||+|+- -|+.. .+.+.|.+.|.+|.++.... + +.++|.||+.=
T Consensus 5 m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~v 55 (308)
T PRK14619 5 KTIAILG-AGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAV 55 (308)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEEC
Confidence 8999998 58888 67899999999998774321 2 46889988853
No 243
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=51.45 E-value=15 Score=33.01 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=25.8
Q ss_pred CCCCCEEEE-CCCc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 35 l~~~d~lil-pGG~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
+.++|.||| ||+. -+....|. ..-|++++++ .|+.+||
T Consensus 180 I~~AD~IIlGPgsp~TSI~P~Ll-----VpgIreAL~~-a~vV~Vs 219 (297)
T TIGR01819 180 IRKEDNILIGPSNPITSIGPILS-----LPGIREALRD-KKVVAVS 219 (297)
T ss_pred HHhCCEEEECCCccHHHhhhhcC-----chhHHHHHHc-CCEEEEc
Confidence 568899999 5553 34444442 4556666665 9999999
No 244
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=51.18 E-value=52 Score=29.76 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh-----hHHHHHHh
Q 025812 44 PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA-----GLIFLANK 87 (247)
Q Consensus 44 pGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~-----G~QlL~~~ 87 (247)
|||...+.+.+ .+.|++..+++ |+.-.+. |-++++.+
T Consensus 108 PGG~v~as~~i------~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~a 149 (317)
T COG0616 108 PGGSVVASELI------ARALKRLRAKK-PVVVSVGGYAASGGYYIALA 149 (317)
T ss_pred cCCchhHHHHH------HHHHHHHhhcC-CEEEEECCeecchhhhhhcc
Confidence 88876444433 45677776667 9998754 44555544
No 245
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=51.03 E-value=26 Score=29.75 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCeEEEECC-------c---cCCCCCCEEEECC-Cch------hHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 025812 14 EHIAALKRLGVKGVEIRK-------P---DQLQNVSSLIIPG-GES------TTMARLAEYHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~-------~---~~l~~~d~lilpG-G~~------~~~~~l~~~~~~~~~i~~~~~~g~PilG 76 (247)
.++++||.-++++..... | +.+..+|+|||+- |.. +..-..+-..+.++.|++++++|.-+|-
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 578999999988886532 2 2467899999965 421 1111111123457899999999877666
Q ss_pred Ee
Q 025812 77 TC 78 (247)
Q Consensus 77 IC 78 (247)
|.
T Consensus 116 iG 117 (254)
T COG5426 116 IG 117 (254)
T ss_pred Ec
Confidence 54
No 246
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=50.58 E-value=1.3e+02 Score=25.20 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+++++.|+.+.++....+ + ..+|+||+...
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 466788999999888754311 1 37999999654
No 247
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=50.09 E-value=60 Score=32.49 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=47.1
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEEC-----C-c---------cCCCCCCEEEECCC--chhHHHHHHhhCCHHHH
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPGG--ESTTMARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-----~-~---------~~l~~~d~lilpGG--~~~~~~~l~~~~~~~~~ 63 (247)
|+|.|-...+.-..+.+.|+..|++++.+. + + .++.+||.||++-. ....++.+
T Consensus 4 ~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l--------- 74 (656)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARL--------- 74 (656)
T ss_pred CEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHH---------
Confidence 789999987777889999999999887642 1 1 24678999999753 22222222
Q ss_pred HHHHHHcCCcEEEEehhHH
Q 025812 64 LREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~Q 82 (247)
+...-.+.|++.|.-+--
T Consensus 75 -~~~~~~~~~i~AVG~~Ta 92 (656)
T PRK06975 75 -DAIWPHALPVAVVGPGSV 92 (656)
T ss_pred -HhhCccCCeEEEECHHHH
Confidence 111114678887775544
No 248
>PRK07116 flavodoxin; Provisional
Probab=49.64 E-value=38 Score=27.08 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=16.8
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCCeE
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGVKG 26 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~~v 26 (247)
||+.|+-+ .||-..+++.+.+ ++.++
T Consensus 3 ~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~ 31 (160)
T PRK07116 3 NKTLVAYFSATGTTKKVAEKLAEVTGADL 31 (160)
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhcCCe
Confidence 68888777 4777766665554 35544
No 249
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.43 E-value=97 Score=26.20 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCeEEEECCccC-------C-----CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~-------l-----~~~d~lilpGG 46 (247)
.+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 466788889999887643211 1 37899999653
No 250
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.30 E-value=60 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
+|+|+.....=.+.++.|...|+++.+.+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCD 42 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 56666654433356677888888777654
No 251
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=49.06 E-value=48 Score=28.17 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=34.1
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC------cc----CC-CCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD----QL-QNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~~----~l-~~~d~lilpG 45 (247)
|+|.|-...+.-..+.+.|++.|+++..+.. +. .+ ..+|.||++-
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS 56 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTS 56 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEEC
Confidence 8999999888878888999999998876531 11 13 3479999974
No 252
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.33 E-value=80 Score=29.56 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=45.2
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCcc------C-------------------CCCCCEEEECCCchh---HHHH
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD------Q-------------------LQNVSSLIIPGGEST---TMAR 53 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~------~-------------------l~~~d~lilpGG~~~---~~~~ 53 (247)
+|+|+...+.=.+..+.|.+.|+++...+... . +.++|.||.+-|.+. .+..
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~~ 86 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEA 86 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHHH
Confidence 68888875554567889999999877654210 0 136888988665331 1222
Q ss_pred HHh-hCCH---HHHHHHHHHc-CCcEEEEehh
Q 025812 54 LAE-YHNL---FPALREFVKM-GKPVWGTCAG 80 (247)
Q Consensus 54 l~~-~~~~---~~~i~~~~~~-g~PilGIC~G 80 (247)
.++ .... .+++.+..+. +.|+.||..-
T Consensus 87 a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT 118 (445)
T PRK04308 87 FKQNGGRVLGDIELLADIVNRRGDKVIAITGS 118 (445)
T ss_pred HHHcCCcEEEhHHHHHHhhhcCCCCEEEEECC
Confidence 221 1111 3445554432 4688888753
No 253
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.09 E-value=67 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.027 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||.|+...|.=.+++++|.+.|+++...+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 57788776665578888888888766654
No 254
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=46.23 E-value=1.6e+02 Score=24.96 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=46.2
Q ss_pred CEEEEEec-C-CChHHHHHHHHhCC--CeEE-EECCccC---C-----CCCCEEEE-CCCchhHHHHHHhhCCHHHHHHH
Q 025812 1 MVVGVLAL-Q-GSFNEHIAALKRLG--VKGV-EIRKPDQ---L-----QNVSSLII-PGGESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 1 m~I~vl~~-~-G~~~~~~~~L~~~G--~~v~-~~~~~~~---l-----~~~d~lil-pGG~~~~~~~l~~~~~~~~~i~~ 66 (247)
|||+||.- . .|+++++++++.-. +++. ++++..+ + ....-.++ ...+++. +. +.+.|.+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r-~~------~d~~l~~ 73 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSR-EA------FDRALVE 73 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCH-HH------HHHHHHH
Confidence 79999983 2 37889999998432 4554 3444322 1 13333444 5555432 11 2344556
Q ss_pred HHHcCCcEEEEehhHHHHH
Q 025812 67 FVKMGKPVWGTCAGLIFLA 85 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~ 85 (247)
.+++-.|=|=+|+|++-+-
T Consensus 74 ~l~~~~~dlvvLAGyMrIL 92 (200)
T COG0299 74 ALDEYGPDLVVLAGYMRIL 92 (200)
T ss_pred HHHhcCCCEEEEcchHHHc
Confidence 6666788899999987543
No 255
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=45.87 E-value=2.8 Score=33.67 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=20.5
Q ss_pred CCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 38 VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 38 ~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
+|.|++.||-....-.... .+..+.|.+.. .+.+.|||+
T Consensus 81 ~D~vVlmGGLAMP~~~v~~-e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTP-EDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp EEEEEEEGGGGSTTTS--H-HHHHHHHHHHE--EEEEEEEEE
T ss_pred CCEEEEEcccccCCCCCCH-HHHHHHHHHhC--cCCEEEEeh
Confidence 8999999984211000000 01234444443 444999997
No 256
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.37 E-value=60 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCeEEEE---CCccC-----C-CCCCEEEECC
Q 025812 14 EHIAALKRLGVKGVEI---RKPDQ-----L-QNVSSLIIPG 45 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~~~-----l-~~~d~lilpG 45 (247)
-+.++|++.|++++.. .++++ + ++.|.|.+++
T Consensus 31 via~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 3568999999998863 34432 1 4678888876
No 257
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=45.27 E-value=1.6e+02 Score=24.77 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=26.7
Q ss_pred EEEEEec--CCChH-----HHHHHHHhC---CC--eEEEECCccC------------CCCCCEEEECCC
Q 025812 2 VVGVLAL--QGSFN-----EHIAALKRL---GV--KGVEIRKPDQ------------LQNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~--~G~~~-----~~~~~L~~~---G~--~v~~~~~~~~------------l~~~d~lilpGG 46 (247)
||||+.. +..|. .+.+++++. |. ++.+.....+ -.++|+||+...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6777763 22232 345777788 87 4455543211 148999999653
No 258
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=45.23 E-value=49 Score=30.81 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEEEC---Cc-c--------CCCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~lilpGG~~ 48 (247)
.+...|++.|+++.... +. + -++++|.||.+||..
T Consensus 199 ~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 199 MLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred HHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 46678999999877542 22 1 134699999999753
No 259
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=45.19 E-value=22 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=24.5
Q ss_pred CEEEEEecCC----ChHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G----~~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||.|-.-+| .+..+.++|++.|++|.++.+.
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~ 36 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPD 36 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEES
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 8999888777 4668999998888999987543
No 260
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=44.80 E-value=33 Score=31.43 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCeEEEECCc---cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 14 EHIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
.+.+.|.+.|++...++.. .++..+|.+|--||..+-+-. . -+.+++.+||+||
T Consensus 79 ~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~A--a--------srv~~~~~PViGv 135 (395)
T KOG4180|consen 79 FCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLA--A--------SRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeeh--h--------hhhhccCCceeee
Confidence 4567788889987766432 357889999998876543111 0 1245578999998
No 261
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.62 E-value=85 Score=29.77 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||+|+...-+=.+.++.|.+ |+++++++
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D 35 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYD 35 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEEC
Confidence 67888864444577788885 99988775
No 262
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=43.98 E-value=42 Score=28.18 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=33.3
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC------c--------cCCCCCCEEEECCC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------P--------DQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~--------~~l~~~d~lilpGG 46 (247)
|||.|......-..+.+.|++.|+++..++. + ..+.++|.||++-.
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~ 61 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSK 61 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECH
Confidence 5788888655556788999999998875421 1 13568999999753
No 263
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=43.84 E-value=1.4e+02 Score=27.33 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=50.9
Q ss_pred CEEEEEe-cCCC---hHHHHHHHHhCCCeEEEECC-cc------CCCCCCEEEECC-CchhHHHHHHhhCCHHHHHHHHH
Q 025812 1 MVVGVLA-LQGS---FNEHIAALKRLGVKGVEIRK-PD------QLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFV 68 (247)
Q Consensus 1 m~I~vl~-~~G~---~~~~~~~L~~~G~~v~~~~~-~~------~l~~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~ 68 (247)
|||-|=. ++-. |.++++.|++.|.++.++.. .+ +.-+++...++. | .+....+.........+.+.+
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~~~~R~~~l~~~~ 79 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-DSLYGKLLESIERQYKLLKLI 79 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7876644 3444 44889999999999987643 22 234788898877 4 222222211000112333444
Q ss_pred HcCCcEEEEehhHHHHHHh
Q 025812 69 KMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 69 ~~g~PilGIC~G~QlL~~~ 87 (247)
.+-+|=+.||.|-...++.
T Consensus 80 ~~~~pDv~is~~s~~a~~v 98 (335)
T PF04007_consen 80 KKFKPDVAISFGSPEAARV 98 (335)
T ss_pred HhhCCCEEEecCcHHHHHH
Confidence 4568988998887666644
No 264
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=43.68 E-value=11 Score=31.23 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHH-HHHHHHHcCCcEEEEehhHHHHH
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFP-ALREFVKMGKPVWGTCAGLIFLA 85 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~-~i~~~~~~g~PilGIC~G~QlL~ 85 (247)
+.|.+|+|| +++..-.+|-.-.++.+ .+.++-..+.+.+|+|+-.|++-
T Consensus 109 ~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q~~~ 159 (182)
T PRK10333 109 RLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVE 159 (182)
T ss_pred cCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeEEeC
Confidence 469999999 77644233322234433 34433222345799999998864
No 265
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=42.92 E-value=65 Score=26.98 Aligned_cols=62 Identities=21% Similarity=0.511 Sum_probs=34.1
Q ss_pred EEEEEecCCCh----HHHHHHHHhCCCeEEEECCccCCCCCCEEEE----CCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 2 VVGVLALQGSF----NEHIAALKRLGVKGVEIRKPDQLQNVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 2 ~I~vl~~~G~~----~~~~~~L~~~G~~v~~~~~~~~l~~~d~lil----pGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
+|+|+..+|.. ..+.+.|+++.. -+++.+|+| |||....... +.+.|+++- .++|
T Consensus 1 ~v~vi~i~g~i~~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s~Gg~~~~~~~------l~~~i~~~~-~~kp 63 (207)
T TIGR00706 1 TIAILPVSGAIAVSPEDFDKKIKRIKD----------DKSIKALLLRINSPGGTVVASEE------IYEKLKKLK-AKKP 63 (207)
T ss_pred CEEEEEEEEEEecCHHHHHHHHHHHhh----------CCCccEEEEEecCCCCCHHHHHH------HHHHHHHhc-CCCC
Confidence 47888877755 355666665531 123455555 4443322222 344555543 5899
Q ss_pred EEEEehh
Q 025812 74 VWGTCAG 80 (247)
Q Consensus 74 ilGIC~G 80 (247)
+.+.|-|
T Consensus 64 via~v~g 70 (207)
T TIGR00706 64 VVASMGG 70 (207)
T ss_pred EEEEECC
Confidence 9976644
No 266
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=42.77 E-value=49 Score=27.43 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhCCCeEEEECC----------c---cCCCCCCEEEECC-CchhHHHHH-HhhCCHHHHHHHHHHcCCcEE
Q 025812 11 SFNEHIAALKRLGVKGVEIRK----------P---DQLQNVSSLIIPG-GESTTMARL-AEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~~~~----------~---~~l~~~d~lilpG-G~~~~~~~l-~~~~~~~~~i~~~~~~g~Pil 75 (247)
++..+..+|.+.+.++..+.. . +++.+||.|||.. +..+.+... .. ...+.|++++++|.-++
T Consensus 28 ~v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~--~~~~~l~~yV~~GGgLl 105 (177)
T PF07090_consen 28 GVDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSP--NQLELLADYVRDGGGLL 105 (177)
T ss_dssp SSHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----H--HHHHHHHHHHHTT-EEE
T ss_pred ChHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCH--HHHHHHHHHHHhCCEEE
Confidence 455678899999998876532 2 3478999999987 433221000 11 23678999999877654
Q ss_pred EEehhHH
Q 025812 76 GTCAGLI 82 (247)
Q Consensus 76 GIC~G~Q 82 (247)
-| .|.+
T Consensus 106 mi-gG~~ 111 (177)
T PF07090_consen 106 MI-GGPR 111 (177)
T ss_dssp EE--STT
T ss_pred EE-eChh
Confidence 44 3433
No 267
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=42.65 E-value=72 Score=30.78 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=29.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE-CCccCCCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKPDQLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~~~l~~~d~lil 43 (247)
|||+|+. +..|. ++...|+..|.+++.+ ..|+.-...|.|-+
T Consensus 1 mkiaiig-qs~fg~~vy~~lrk~gheiv~vftipdk~g~~d~l~~ 44 (881)
T KOG2452|consen 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGL 44 (881)
T ss_pred CeeEEec-hhhhhHHHHHHHHhcCceEEEEEEecCCCCCcCcccc
Confidence 9999998 55555 7889999999998754 33443344555544
No 268
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.30 E-value=41 Score=26.79 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-----------------------------C----CCCCCEEEECCCc
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----------------------------Q----LQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-----------------------------~----l~~~d~lilpGG~ 47 (247)
||+|+. .|+.. .+...|.+.|.+|.++...+ | ++++|.||+.= +
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav-P 78 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV-P 78 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc-c
Confidence 788998 68887 57788999998888764320 1 34567666632 1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 48 ~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
....+ .+.+.|+.++..+.+++..+-|+
T Consensus 79 s~~~~------~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 79 SQAHR------EVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GGGHH------HHHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHH------HHHHHHhhccCCCCEEEEecCCc
Confidence 11122 13455666667788888877776
No 269
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.05 E-value=60 Score=29.31 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEECCcc---CCCCCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHH
Q 025812 11 SFNEHIAALKRLGVKGVEIRKPD---QLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~~~~~~---~l~~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~Q 82 (247)
+-....+.|++.|.+++++.+.+ -+.++|.++++. +.-.. ..+-...+......-+.+.++|++..|--+=
T Consensus 158 eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~n-G~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 158 EGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILAN-GALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred hHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecC-CcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 44467899999999988776654 246788888876 31100 0110111222333344457999998886543
No 270
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=40.64 E-value=1.5e+02 Score=25.33 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=23.6
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||++++ ..||+..+.+.++.+ .-.++|.+|+.|-
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~-----------~~~~~D~vv~~GD 40 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLA-----------PETGADAIVLIGN 40 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHH-----------hhcCCCEEEECCC
Confidence 6888887 578887766666533 1135788888883
No 271
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.53 E-value=2.2e+02 Score=24.36 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=36.8
Q ss_pred EEEEEecC--CChH-----HHHHHHHhCCCeEEEE-CCc---c-------C--CCCCCEEEECCCchhHHHHHHhhCCHH
Q 025812 2 VVGVLALQ--GSFN-----EHIAALKRLGVKGVEI-RKP---D-------Q--LQNVSSLIIPGGESTTMARLAEYHNLF 61 (247)
Q Consensus 2 ~I~vl~~~--G~~~-----~~~~~L~~~G~~v~~~-~~~---~-------~--l~~~d~lilpGG~~~~~~~l~~~~~~~ 61 (247)
||+|+... ..+. .+.+.+++.|+.+.++ ... + . -..+|++|+.+...+.. .
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~---------~ 71 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVST---------A 71 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhh---------h
Confidence 67777632 2222 3457788899998754 221 1 1 14789999965322111 1
Q ss_pred HHHHHHHHcCCcEEEE
Q 025812 62 PALREFVKMGKPVWGT 77 (247)
Q Consensus 62 ~~i~~~~~~g~PilGI 77 (247)
+.++++.+.++|+..+
T Consensus 72 ~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 72 AAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 2334444567787643
No 272
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=39.49 E-value=72 Score=32.06 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=37.8
Q ss_pred HHHHhCCCeEEEECCcc-----CCCCCCEEEECCCchhH----HHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 17 AALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 17 ~~L~~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~----~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
++|.=+-++|..++-.+ -+++.|.||=.|...++ ..|. +..+.+.|++++++|.-++|++-
T Consensus 475 E~LSG~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~SGG~~W~--d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 475 ECLSGMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWSGGDVWT--NPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred HHhcCCCeeEEEecHHHHhhcCCCcCCcEEEecCcccccccCccccC--CHHHHHHHHHHHHcCCeEEEEEC
Confidence 33333334666665332 24688988888843222 1222 23467899999999999998883
No 273
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=39.42 E-value=60 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEEE---CCcc--------C-CCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVEI---RKPD--------Q-LQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~~--------~-l~~~d~lilpGG~~ 48 (247)
.+...|++.|++++.. .+.. + ..++|.||.+||..
T Consensus 208 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 3667899999987643 3321 1 35799999999753
No 274
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=39.34 E-value=16 Score=29.98 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHH-HHHHHHHcCCcEEEEehhHHHHHH
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFP-ALREFVKMGKPVWGTCAGLIFLAN 86 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~-~i~~~~~~g~PilGIC~G~QlL~~ 86 (247)
+.|.+|+|| +++..-.+|-.-.++.+ .+.. .....+.+|+|+-.|++..
T Consensus 115 ~idlvivP~lafD~~G~RLG~GgGyYDR~L~~-~~~~~~~igv~~~~q~~~~ 165 (181)
T TIGR02727 115 EIDLIIVPGVAFDRRGYRLGYGGGYYDRFLAN-LKGKTVVVGLAFDFQLVDE 165 (181)
T ss_pred cCCEEEeCceEEcCCCccccCCcchHHHHHHh-cccCCCEEEEEecceeeCc
Confidence 459999999 77654334433334443 3333 2223448999988888653
No 275
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=39.04 E-value=49 Score=26.94 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=31.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilp 44 (247)
|||.+++.+-... .+...|+..|+++..+.+.++ -..+|.+++-
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild 51 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVD 51 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEE
Confidence 8998888655444 577889999998887766442 1468988884
No 276
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=38.91 E-value=28 Score=31.74 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=26.5
Q ss_pred CCCCCEEEE-CCCc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 35 l~~~d~lil-pGG~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
+.++|.|++ ||+. .+.++.|.- .++.+.|++ ...|++++|.
T Consensus 187 I~~AD~IviGPgSl~TSIlP~Lll-p~I~eaLr~---~~ap~i~v~n 229 (323)
T COG0391 187 IKEADLIVIGPGSLFTSILPILLL-PGIAEALRE---TVAPIVYVCN 229 (323)
T ss_pred HHhCCEEEEcCCccHhhhchhhch-hHHHHHHHh---CCCCEEEecc
Confidence 578999999 7663 344444421 234556655 5789999994
No 277
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=38.68 E-value=2.2e+02 Score=23.27 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=38.4
Q ss_pred EEEEecC--CChH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 3 VGVLALQ--GSFN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 3 I~vl~~~--G~~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
|+|+... ..+. .+.+++++.|.++.+.....+ + ..+|++|+.+..++.. .
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~----------~- 70 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDE----------L- 70 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchH----------H-
Confidence 6666643 2222 456677788998887654321 1 4789999977544321 1
Q ss_pred HHHHHHcCCcEEEE
Q 025812 64 LREFVKMGKPVWGT 77 (247)
Q Consensus 64 i~~~~~~g~PilGI 77 (247)
++.+.+.++|+..+
T Consensus 71 ~~~~~~~~ipvv~~ 84 (264)
T cd06267 71 LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHcCCCEEEe
Confidence 34444567887665
No 278
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=37.91 E-value=1.3e+02 Score=21.97 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=31.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCc----------------cCCCCCCEEEECCCchh
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP----------------DQLQNVSSLIIPGGEST 49 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~----------------~~l~~~d~lilpGG~~~ 49 (247)
+|.|+. .|+.. .-++.|.+.|++++++++. +++..++.++...+.++
T Consensus 9 ~vlVvG-gG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 9 RVLVVG-GGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp EEEEEE-ESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred EEEEEC-CCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence 455555 46666 4568888899999988654 14677888888766543
No 279
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=37.83 E-value=1.6e+02 Score=24.82 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 20 SIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 567888889999998754311 1 46999999653
No 280
>PRK11778 putative inner membrane peptidase; Provisional
Probab=37.67 E-value=1.2e+02 Score=27.86 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=25.1
Q ss_pred CEEEE----CCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE----Ee-hhHHHHHHhh
Q 025812 39 SSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWG----TC-AGLIFLANKA 88 (247)
Q Consensus 39 d~lil----pGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilG----IC-~G~QlL~~~~ 88 (247)
|+|++ |||.....+.. ...|+++.+.++|+.. +| -|.++|+.+.
T Consensus 124 ~aVvLridSpGG~v~~s~~a------~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA 176 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLA------ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA 176 (330)
T ss_pred CeEEEEEeCCCCchhHHHHH------HHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC
Confidence 66766 77764433322 1224444457899887 44 5566666553
No 281
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.43 E-value=1.6e+02 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=23.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
+|+|+...+.=.++.++|++.|+++..++
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVD 33 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEe
Confidence 68999987666689999999999877554
No 282
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.09 E-value=2.5e+02 Score=23.48 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCeEEEECCcc----------C--CCCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPD----------Q--LQNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~----------~--l~~~d~lilpGG 46 (247)
.+.+.+++.|+++.++.... . -..+|++|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 20 GVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45577888899988765431 1 157999998653
No 283
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=36.99 E-value=78 Score=26.12 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=39.9
Q ss_pred EEEEEecCCC-----h-----HHHHHHHHhCCCeE---EEECCcc---------CCCC-CCEEEECCCchhHHHHHHhhC
Q 025812 2 VVGVLALQGS-----F-----NEHIAALKRLGVKG---VEIRKPD---------QLQN-VSSLIIPGGESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~G~-----~-----~~~~~~L~~~G~~v---~~~~~~~---------~l~~-~d~lilpGG~~~~~~~l~~~~ 58 (247)
+|+|+..+.. . ..+.++|++.|.++ .++++.. .+.+ +|.++..||..-.-+ .
T Consensus 9 ~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~R-----D 83 (169)
T COG0521 9 RIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPR-----D 83 (169)
T ss_pred eEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCC-----c
Confidence 4677765432 2 25789999999876 3444432 1233 899999997431100 0
Q ss_pred CHHHHHHHHHHcCCc
Q 025812 59 NLFPALREFVKMGKP 73 (247)
Q Consensus 59 ~~~~~i~~~~~~g~P 73 (247)
-..+.++..+++.+|
T Consensus 84 vTpEA~~~~~dKeip 98 (169)
T COG0521 84 VTPEATRPLFDKEIP 98 (169)
T ss_pred CCHHHHHHHHhccCC
Confidence 124566677777777
No 284
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=36.85 E-value=2.5e+02 Score=23.50 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=37.6
Q ss_pred EEEEEec--CCChH-----HHHHHHHhCCCeEEEECC-----cc-------CC--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLAL--QGSFN-----EHIAALKRLGVKGVEIRK-----PD-------QL--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~--~G~~~-----~~~~~L~~~G~~v~~~~~-----~~-------~l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
||||+.. +..+- .+.+++++.|+++.+... +. .+ ..+|++|+.+...+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--------- 71 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNL--------- 71 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHh---------
Confidence 5777774 22222 355788888999887531 11 01 4689998865332211
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025812 61 FPALREFVKMGKPVWGT 77 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGI 77 (247)
.+.++.+.+.+.|+..+
T Consensus 72 ~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 72 VPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 11233444568888765
No 285
>PLN02688 pyrroline-5-carboxylate reductase
Probab=36.82 E-value=1.2e+02 Score=25.95 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=43.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC----eEEEE-CC-c-----------------cC-CCCCCEEEECCCchhHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV----KGVEI-RK-P-----------------DQ-LQNVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~----~v~~~-~~-~-----------------~~-l~~~d~lilpGG~~~~~~~l~ 55 (247)
|||+++- -|+.. .+.+.|.+.|. ++.++ +. + .+ +.++|.||+.= .+.....+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~v- 77 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDV- 77 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHH-
Confidence 8999998 48888 57788888887 66555 21 1 01 24678777754 23222221
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhHH
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~Q 82 (247)
.+.+......+..++-++.|..
T Consensus 78 -----l~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 78 -----LTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred -----HHHHHhhcCCCCEEEEecCCCc
Confidence 2233344445666776666643
No 286
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=36.71 E-value=2e+02 Score=22.85 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=38.2
Q ss_pred CEEEEEec--CCChH-----HHHHHHHhCCCe---EEEECCcc------------CCCCCCEEEECC----CchhHHHHH
Q 025812 1 MVVGVLAL--QGSFN-----EHIAALKRLGVK---GVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (247)
Q Consensus 1 m~I~vl~~--~G~~~-----~~~~~L~~~G~~---v~~~~~~~------------~l~~~d~lilpG----G~~~~~~~l 54 (247)
|||+|+.- .-.+. ...+.|++.|++ +.++..|- +-.++|++|--| |....++.+
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v 80 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYV 80 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHH
Confidence 68888873 22222 345678888875 33444331 114699888877 433223333
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 025812 55 AEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~Pil 75 (247)
... -.....+-.++.++|+.
T Consensus 81 ~~~-v~~gl~~~sl~~~~PV~ 100 (138)
T TIGR00114 81 ADE-AAKGIADLALDYDKPVI 100 (138)
T ss_pred HHH-HHHHHHHHHhhhCCCEE
Confidence 221 11223333444577764
No 287
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.66 E-value=66 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=24.7
Q ss_pred hHHHHHHHHhCCCeEEE---ECCc-c--------CCCCCCEEEECCCc
Q 025812 12 FNEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGGE 47 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~---~~~~-~--------~l~~~d~lilpGG~ 47 (247)
-..+.+.|++.|+++.. +.+. + .+.++|.||..||.
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~ 67 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGT 67 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34678899999997653 3322 1 13568999999974
No 288
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.43 E-value=2.6e+02 Score=23.48 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=38.9
Q ss_pred EEEEEecCC--C-hH-----HHHHHHHhCCCeEEEECCcc-C----------C--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQG--S-FN-----EHIAALKRLGVKGVEIRKPD-Q----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G--~-~~-----~~~~~L~~~G~~v~~~~~~~-~----------l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
||+|+...- + +. .+.+++++.|.++.+..... + + ..+|++|+.....+..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~--------- 71 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDAL--------- 71 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh---------
Confidence 577766322 2 22 45577777899988764322 1 1 4689999965332111
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 025812 61 FPALREFVKMGKPVWGTC 78 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC 78 (247)
.+.++++.+.++|++-+.
T Consensus 72 ~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 72 DPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 123344445678887774
No 289
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=36.42 E-value=1.5e+02 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=21.3
Q ss_pred CEEEEEecCC--C------hHHHHHHHHhCC--CeEEEEC
Q 025812 1 MVVGVLALQG--S------FNEHIAALKRLG--VKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G--~------~~~~~~~L~~~G--~~v~~~~ 30 (247)
|||+|..+-| | +.++++.|++.. +++++++
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S 40 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMS 40 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 8999998754 3 347888888875 6666553
No 290
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.08 E-value=2.3e+02 Score=22.77 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=43.1
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc--CCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD--QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~--~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
||.|+...++.. .+...|...|..+..+.+.. .+.+-|.+|+-. |.... ..+.++.+.+.|.|+
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~---------~i~~~~~ak~~g~~i 105 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSS---------VVNAAEKAKKAGAKV 105 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 577777655533 45566777898887765432 345667776632 44321 234556666789999
Q ss_pred EEEeh
Q 025812 75 WGTCA 79 (247)
Q Consensus 75 lGIC~ 79 (247)
++|+.
T Consensus 106 I~IT~ 110 (179)
T cd05005 106 VLITS 110 (179)
T ss_pred EEEEC
Confidence 99984
No 291
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=36.07 E-value=71 Score=28.00 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=29.3
Q ss_pred EEEEEecCC----------ChHHHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQG----------SFNEHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G----------~~~~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
||+|+. .| +...+.++|++.|+++..+....+ ..++|.++.
T Consensus 6 ~v~~~~-g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~ 62 (304)
T PRK01372 6 KVAVLM-GGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFN 62 (304)
T ss_pred EEEEEe-CCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEE
Confidence 789888 22 234788999999999988754332 236898876
No 292
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=36.04 E-value=2.3e+02 Score=22.72 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=45.1
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc--CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD--QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~--~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
+|-++...++.. .+...|.+.|..+....+.. .+.+-|.+|+ +- |.... ..+.++.+.++|.|+
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~---------~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETES---------LVTVAKKAKEIGATV 102 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 466666544433 45566777898877664432 3556677766 33 44321 244555666789999
Q ss_pred EEEeh-hHHHHHH
Q 025812 75 WGTCA-GLIFLAN 86 (247)
Q Consensus 75 lGIC~-G~QlL~~ 86 (247)
++|+. ..--|++
T Consensus 103 i~IT~~~~s~la~ 115 (179)
T TIGR03127 103 AAITTNPESTLGK 115 (179)
T ss_pred EEEECCCCCchHH
Confidence 99995 3333443
No 293
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=35.75 E-value=1.4e+02 Score=26.77 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=28.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECC----------------------------ccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRK----------------------------PDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~----------------------------~~~l~~~d~lilpGG~ 47 (247)
|||+|+.- |++. ++...|...|. ++..++. .+++.++|.+|++.|.
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 47888875 7766 34455555554 4444321 1246789999998874
No 294
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.56 E-value=66 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.6
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEECC
Q 025812 3 VGVLALQGSFNEHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~G~~v~~~~~ 31 (247)
+++++-+|+|..++..|++.|.+|..+..
T Consensus 109 ~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 109 VALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred EEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 56677788999999999999999988754
No 295
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=35.50 E-value=1.2e+02 Score=25.15 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=23.5
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=+-..-+. .+.++|++.|++|+-+.+
T Consensus 1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGT 34 (171)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8998777555433 688999999999886654
No 296
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.33 E-value=2.7e+02 Score=23.29 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=28.6
Q ss_pred EEEEEecC-CC--hH----HHHHHHHhCCCeEEEECC-----cc-------CC--CCCCEEEECCC
Q 025812 2 VVGVLALQ-GS--FN----EHIAALKRLGVKGVEIRK-----PD-------QL--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~--~~----~~~~~L~~~G~~v~~~~~-----~~-------~l--~~~d~lilpGG 46 (247)
||||+..+ .+ +. .+.+++++.|+.+.+... ++ .+ ..+|++|+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 68887743 22 22 455778889999888642 11 11 37899999654
No 297
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=35.28 E-value=59 Score=28.51 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=47.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC-----c---------cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHH
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK-----P---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~-----~---------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~ 66 (247)
++|+|-.....-..+.+.|++.|++++.+.. . .++.++|.||+.-.. ..+.+.. +. .++
T Consensus 19 ~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~N--AV~~~~~---~~-~~~- 91 (266)
T PRK08811 19 WTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPA--AVRAAHR---LL-PLQ- 91 (266)
T ss_pred CEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHH--HHHHHHH---Hh-ccc-
Confidence 3677777666667899999999998875432 1 135689999997522 1122111 00 011
Q ss_pred HHHcCCcEEEEehhHHHHHHh
Q 025812 67 FVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~ 87 (247)
.-.+.|+++|.-+-.-..+.
T Consensus 92 -~~~~~~~~AVG~~TA~aL~~ 111 (266)
T PRK08811 92 -RPARAHWLSVGEGTARALQA 111 (266)
T ss_pred -CccCCeEEEECHHHHHHHHH
Confidence 11478888887655444333
No 298
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=35.11 E-value=73 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=27.0
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|+|+|+. .+|++..+.+.|++++.+ .+.|.||+.|
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~----------~~~D~li~lG 36 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFD----------PAKDTLWLVG 36 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCC----------CCCCEEEEeC
Confidence 8887777 699999999999987542 2457777777
No 299
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=34.83 E-value=1.7e+02 Score=23.35 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=27.9
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCCC---eEEEECCcc------------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGS--FN-----EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~--~~-----~~~~~L~~~G~---~v~~~~~~~------------~l~~~d~lilpG 45 (247)
+||+|+.-.=| +. ...+.|++.|+ ++.++.-|. +-.++|++|.-|
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALG 70 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEE
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEec
Confidence 38999885333 22 34678888887 555544331 124699888776
No 300
>PRK09273 hypothetical protein; Provisional
Probab=34.78 E-value=55 Score=27.99 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=23.1
Q ss_pred CEEEEEecCCC-------hHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGS-------FNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~-------~~~~~~~L~~~G~~v~~~~ 30 (247)
||||++....+ +..+.++|+..|++|.-+.
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G 37 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYG 37 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeC
Confidence 99999996432 3367889999999988654
No 301
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=34.53 E-value=3e+02 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGVE 28 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~~ 28 (247)
|||+|+...|... .+++.+.+. +++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elva 31 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVA 31 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 7999999778877 466777654 667654
No 302
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=34.46 E-value=53 Score=25.19 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=24.1
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||++++ ..++...+.++++.+ .++|.+|+.|-
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~-------------~~~d~vi~~GD 34 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI-------------NEPDFVIILGD 34 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH-------------TTESEEEEES-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh-------------cCCCEEEECCC
Confidence 8999998 467777766777655 23788999985
No 303
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=34.39 E-value=44 Score=30.23 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=24.7
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEe
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTC 78 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC 78 (247)
+.++|.||| ||+ +.+....|. ..-|+++++ ..-|+.+||
T Consensus 181 I~~AD~IVlGPgsp~TSI~P~Ll-----VpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 181 IEDADLVIIGPSNPVTSIGPILA-----LPGIREALRDKKAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHHhhhhcc-----chhHHHHHHhCCCCEEEEc
Confidence 568899999 655 334444442 344555554 456999999
No 304
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=34.20 E-value=69 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG~~ 48 (247)
.+...|++.|+++... .+. + -++++|.||.+||..
T Consensus 398 ~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 398 TIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 4778899999987643 332 1 135799999999753
No 305
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=33.94 E-value=87 Score=26.84 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=47.3
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|||.|+.-+=+... +..+|+..|+++....+.++ -. +|.||+==+.|. ++-+ .+.+.||+......|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~-~dG~----~~~~~iR~~~~~~~P 74 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPD-LDGL----ELCRRLRAKKGSGPP 74 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECCCCC-CCHH----HHHHHHHhhcCCCCc
Confidence 78999986555654 66899999999999886532 13 999998222221 1111 124455544335688
Q ss_pred EEEEehh
Q 025812 74 VWGTCAG 80 (247)
Q Consensus 74 ilGIC~G 80 (247)
|+-+..-
T Consensus 75 Ii~Lta~ 81 (229)
T COG0745 75 IIVLTAR 81 (229)
T ss_pred EEEEECC
Confidence 9988865
No 306
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=33.81 E-value=2e+02 Score=23.77 Aligned_cols=29 Identities=31% Similarity=0.032 Sum_probs=18.9
Q ss_pred CEEEEEec---CCChH-----HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLAL---QGSFN-----EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~---~G~~~-----~~~~~L~~~G~~v~~~ 29 (247)
|||.++.- .+++. .+.+.+++.|++++.+
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~i 37 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHW 37 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEE
Confidence 89988873 22322 3456667789888765
No 307
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=33.68 E-value=1.8e+02 Score=27.05 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=43.1
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECC--------------------------ccCCCCCCEEEECCCchh--H-HH
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK--------------------------PDQLQNVSSLIIPGGEST--T-MA 52 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~--------------------------~~~l~~~d~lilpGG~~~--~-~~ 52 (247)
||.|+...|.=.++++.|.+.|++|...+. ++.+.++|.||.+-|.+. . +.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 466677665544777888888877665431 111345788888665321 1 22
Q ss_pred HHHhhCC-----HHHHHHHHHHcCCcEEEEehhH
Q 025812 53 RLAEYHN-----LFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 53 ~l~~~~~-----~~~~i~~~~~~g~PilGIC~G~ 81 (247)
+.++ .+ -.+++.++. +.|++||..-+
T Consensus 81 ~a~~-~~i~i~~~~e~~~~~~--~~~~I~VTGT~ 111 (433)
T TIGR01087 81 AAAK-RGIPVVGDIELFLRLV--PLPVVAITGTN 111 (433)
T ss_pred HHHH-CCCcEEEHHHHHHhhc--CCCEEEEECCC
Confidence 2221 12 134444443 67889988665
No 308
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=33.42 E-value=1.5e+02 Score=27.77 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=46.1
Q ss_pred EEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|+.|..+....+ .+...|++.|++.+. +.+++|.+|+.- +.....++ +..+.++++.+.+.++.
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~-----~~~~aD~viinTC~v~~~a~~-----~~~~~i~~~~~~~~~vv 70 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTP-----NYEDADYVIVNTCGFIEDARQ-----ESIDTIGELADAGKKVI 70 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECC-----CcccCCEEEEeCCCccchHHH-----HHHHHHHHHHhcCCCEE
Confidence 467777755433 467889999987552 345789999965 54322111 12455667666676655
Q ss_pred EEehhHHHHHHhh
Q 025812 76 GTCAGLIFLANKA 88 (247)
Q Consensus 76 GIC~G~QlL~~~~ 88 (247)
-..-..|+..+.+
T Consensus 71 vgGc~a~~~pee~ 83 (430)
T TIGR01125 71 VTGCLVQRYKEEL 83 (430)
T ss_pred EECCccccchHHH
Confidence 5544566655543
No 309
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=32.67 E-value=37 Score=30.71 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=25.6
Q ss_pred CCCCCEEEE-CCCc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 35 l~~~d~lil-pGG~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
+.++|.||| ||.+ .+....|. ..-|++++ ...|+.+||
T Consensus 183 I~~AD~IiiGPgnp~TSI~P~L~-----v~gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 183 IEEADAVIIGPSNPVTSIGPILA-----VPGIREAL-TEAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHhhchhcc-----chhHHHHH-hCCCEEEEc
Confidence 567899999 5553 33344432 45566766 688999998
No 310
>PRK13055 putative lipid kinase; Reviewed
Probab=32.59 E-value=2.7e+02 Score=25.12 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=30.6
Q ss_pred EEEEEecC--CC------hHHHHHHHHhCCCeEEEEC---Ccc-------C--CCCCCEEEECCCchh
Q 025812 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIR---KPD-------Q--LQNVSSLIIPGGEST 49 (247)
Q Consensus 2 ~I~vl~~~--G~------~~~~~~~L~~~G~~v~~~~---~~~-------~--l~~~d~lilpGG~~~ 49 (247)
|+.|+.++ |+ ...+.+.|++.|.++.++. .+. + ...+|.||+.||..+
T Consensus 4 r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 4 RARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 78888874 43 2256788999998866432 211 1 135789988887554
No 311
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=32.57 E-value=63 Score=27.82 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=32.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC-----C-c---------cCCCCCCEEEECC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-----~-~---------~~l~~~d~lilpG 45 (247)
+|.|-.....-..+.+.|++.|+++..++ + + .++.++|.||++-
T Consensus 5 ~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS 63 (255)
T PRK05752 5 RLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVS 63 (255)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEEC
Confidence 67777766666688999999999887542 1 1 2467899999975
No 312
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.54 E-value=1.2e+02 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=22.4
Q ss_pred CEEEEEecCCChH-HHHHHHHh-CCCeEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKR-LGVKGVE 28 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~-~G~~v~~ 28 (247)
|||+|..+.|... .+++++.+ -+.++.-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~ 30 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVG 30 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEE
Confidence 8999999989988 47777777 6777663
No 313
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=32.27 E-value=1.2e+02 Score=27.43 Aligned_cols=48 Identities=31% Similarity=0.345 Sum_probs=30.8
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCeEEEE---CCc-c-------C-CCC-CCEEEECCCch
Q 025812 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D-------Q-LQN-VSSLIIPGGES 48 (247)
Q Consensus 1 m~I~vl~~~G----------~~~~~~~~L~~~G~~v~~~---~~~-~-------~-l~~-~d~lilpGG~~ 48 (247)
+|++|+.... |-..+...|++.|+++... .+. + + +++ +|.||++||..
T Consensus 160 ~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 160 LRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred CEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 3788887522 1225678899999987642 322 1 1 234 89999999753
No 314
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=32.22 E-value=1.4e+02 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=23.4
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=+-..-+. .+.++|+..|++|+-+.+
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGT 34 (171)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8988877555443 688999999999876543
No 315
>PRK13054 lipid kinase; Reviewed
Probab=32.21 E-value=2e+02 Score=25.43 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=30.6
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCeEEEECC--ccC---------CCCCCEEEECCCchh
Q 025812 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRK--PDQ---------LQNVSSLIIPGGEST 49 (247)
Q Consensus 2 ~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~--~~~---------l~~~d~lilpGG~~~ 49 (247)
|+.++.++.. +..+.+.|++.|.++.+... +.+ ...+|.||+-||..+
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 6777666432 44677889999988765432 211 246799988887544
No 316
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.08 E-value=2.7e+02 Score=23.14 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEE-CCccC------------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 14 EHIAALKRLGVKGVEI-RKPDQ------------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~-~~~~~------------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
.+.+++++.|+++.++ ....+ -..+|+||+....++. +.+.++++.++|+|+..+=..
T Consensus 19 g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~---------~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 19 GAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS---------LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT---------THHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH---------HHHHHHHHhhcCceEEEEecc
Confidence 4567888899998885 32211 1579999985533221 134455666789998885433
No 317
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=32.03 E-value=93 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=19.9
Q ss_pred CEEEEEec----CCChH----HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLAL----QGSFN----EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~----~G~~~----~~~~~L~~~G~~v~~~~ 30 (247)
|||.++.- .||.. .+++.+++.|+++++++
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~ 38 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIR 38 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEE
Confidence 66644442 46644 56778888999988754
No 318
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.80 E-value=1.5e+02 Score=20.30 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.7
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEECCccCCCC
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKPDQLQN 37 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~~l~~ 37 (247)
|+=.++.|+.+.. ...+.|++.|.++++++.|.++..
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~ 39 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISA 39 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccC
Confidence 5456777777655 456899999999999999988743
No 319
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=31.71 E-value=91 Score=26.58 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.2
Q ss_pred EEEEEecCC--ChHHHHHHHHhCCCeEEEECCcc----------CCCCCCEEEEC
Q 025812 2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRKPD----------QLQNVSSLIIP 44 (247)
Q Consensus 2 ~I~vl~~~G--~~~~~~~~L~~~G~~v~~~~~~~----------~l~~~d~lilp 44 (247)
||+||...- +...+.+++++.|+++.++...+ .+..+|.++.-
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r 55 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVR 55 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEe
Confidence 689998743 34468899999999988775432 13457887763
No 320
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.49 E-value=3e+02 Score=22.73 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+++++.|+.+.++....+ + .++|++|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 466788889999877653321 1 37899999554
No 321
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.31 E-value=2.4e+02 Score=25.48 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=29.3
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCC--eEE----------------------EE---CC---ccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGV--KGV----------------------EI---RK---PDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~--~v~----------------------~~---~~---~~~l~~~d~lilpGG~ 47 (247)
|||+|+...|++.+ +...|...+. ++. +. .+ .+++.++|.+|++.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 78888886587773 4455554442 222 11 11 2457889999998874
No 322
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=31.26 E-value=1e+02 Score=24.73 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=31.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpG 45 (247)
|+|.|++.+..+. .+.+.|+..|+++....+..+ -..+|.+++--
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~ 52 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDL 52 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEEC
Confidence 7898888655555 467888888988877655321 24689988843
No 323
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.25 E-value=1.8e+02 Score=27.58 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=31.7
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEEEECC-cc--CCCCCCEEEECC
Q 025812 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRK-PD--QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~-~~~~~~~L~~~G~~v~~~~~-~~--~l~~~d~lilpG 45 (247)
|||+|++-+=+ -.++...|...|.+...+.. +. ...++|.+++.+
T Consensus 1 ~~l~viADD~TGatdvas~l~~~G~~t~~~~~v~~~~~~~~~davvi~~ 49 (413)
T COG3395 1 MKLGVIADDLTGATDVASFLVKNGLRTVLVLDVPTVRLFDEVDAVVIAL 49 (413)
T ss_pred CceEEeecccccchHHHHHHHhcCCceeeeecCCcccccccCCEEEEec
Confidence 78999983211 12677889999998776543 22 346899999988
No 324
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.18 E-value=1.5e+02 Score=26.35 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHhCCCeEEEECCccC----CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 9 QGSFNEHIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 9 ~G~~~~~~~~L~~~G~~v~~~~~~~~----l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
+|....+.+.++ .+.++.+....++ +..+|.+|.++|.. .+-++...|+|++.++.
T Consensus 221 ~g~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~--------------~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 221 KGDLEEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAGAS--------------TVAELAAAGLPAILVPL 280 (357)
T ss_pred CCcHHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCCHH--------------HHHHHHHhCCCEEEecC
Confidence 444444554554 5544333322111 34667776665532 22345557999999985
No 325
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=31.11 E-value=1.6e+02 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=23.6
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=+-..-+. .+.++|++.|++|+-+.+
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T TIGR01119 1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGT 34 (171)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCC
Confidence 8988777555333 688999999999886654
No 326
>PRK09004 FMN-binding protein MioC; Provisional
Probab=30.99 E-value=1.2e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=28.1
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECC--ccCCCCCCEEEE
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--PDQLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~--~~~l~~~d~lil 43 (247)
.||.|+-- .||-.. +.+.+++.|.++.+++. ++++.+.|.+|+
T Consensus 2 ~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~ 52 (146)
T PRK09004 2 ADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLI 52 (146)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEE
Confidence 07877753 466553 45677778988876643 345777887766
No 327
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.98 E-value=2e+02 Score=27.40 Aligned_cols=29 Identities=24% Similarity=-0.006 Sum_probs=23.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
+|+|+...+.=.++.++|.+.|++|...+
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVAD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEc
Confidence 68899887665678999999999887654
No 328
>PRK06851 hypothetical protein; Provisional
Probab=30.36 E-value=1.4e+02 Score=27.70 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=32.2
Q ss_pred EEEEEec-CCCh-----HHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 2 VVGVLAL-QGSF-----NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~-~G~~-----~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
++.||.- +|.= ..+.+.+.+.|.+|..+..+.|-...|+||+|.
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~ 80 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPE 80 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecC
Confidence 5666663 5542 256667888899999887776667889999987
No 329
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=30.29 E-value=93 Score=26.73 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=47.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEEC-----C----c---cCCCCCCEEEECCCc--hhHHHHHHhhCCHHHHHHH
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K----P---DQLQNVSSLIIPGGE--STTMARLAEYHNLFPALRE 66 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-----~----~---~~l~~~d~lilpGG~--~~~~~~l~~~~~~~~~i~~ 66 (247)
|+|.|......-..+...|+..|+++..++ + + .++..+|.|+++-.. ....+.+... + ++
T Consensus 2 ~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~-~-----~~ 75 (248)
T COG1587 2 MRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQ-G-----LD 75 (248)
T ss_pred cEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhh-c-----cc
Confidence 789999987666678999999999766543 1 1 135568999997532 1112222110 0 01
Q ss_pred HHHcCCcEEEEehhHHHHHHh
Q 025812 67 FVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~ 87 (247)
.-.+.++++|.-.-.-..+.
T Consensus 76 -~~~~~~i~aVG~~Ta~~l~~ 95 (248)
T COG1587 76 -ALKNKKIAAVGEKTAEALRK 95 (248)
T ss_pred -ccccCeEEEEcHHHHHHHHH
Confidence 11468888887554444444
No 330
>PRK07308 flavodoxin; Validated
Probab=30.29 E-value=1.9e+02 Score=22.44 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=27.0
Q ss_pred EEEEEec--CCChHH----HHHHHHhCCCeEEEECC----ccCCCCCCEEEE
Q 025812 2 VVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK----PDQLQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~----~~~l~~~d~lil 43 (247)
||.|+-. .||-.. +.+.|++.|.++.+... +.++.++|.||+
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~ 54 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIV 54 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEE
Confidence 5666654 577554 44566777887766532 234678899988
No 331
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=30.14 E-value=2e+02 Score=25.92 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=44.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE-CCc-c----------------C-CCCCCEEEECCCchhHHHHHHhhCCH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKP-D----------------Q-LQNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~-~----------------~-l~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
|+|+|+.. |+.. ++.+.|++.|.++++. +.. + + +.++|.|++.=-....... +
T Consensus 4 kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~------v 76 (314)
T TIGR00465 4 KTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEV------Y 76 (314)
T ss_pred CEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHH------H
Confidence 58999984 7776 6888999999876543 211 0 1 2457777774211111111 1
Q ss_pred HHHHHHHHHcCCcEEEEehhHHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.+.|+..+..+ .++.++.|.-+
T Consensus 77 ~~ei~~~l~~g-~iVs~aaG~~i 98 (314)
T TIGR00465 77 EAEIQPLLKEG-KTLGFSHGFNI 98 (314)
T ss_pred HHHHHhhCCCC-cEEEEeCCccH
Confidence 23344444334 59999999875
No 332
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.13 E-value=2.2e+02 Score=29.20 Aligned_cols=77 Identities=8% Similarity=-0.023 Sum_probs=45.7
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEECCcc---------------------CCCCCCEEEECCCchh---HHHHHHh
Q 025812 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD---------------------QLQNVSSLIIPGGEST---TMARLAE 56 (247)
Q Consensus 2 ~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~---------------------~l~~~d~lilpGG~~~---~~~~l~~ 56 (247)
+|.|+...|.=.+ +++.|.+.|++|...+... .+.++|.||.+-|.+. .....++
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 3888888776555 4899999999988765210 1346888888555321 1222211
Q ss_pred hCC-----HHHHHHHHHHcCCcEEEEehh
Q 025812 57 YHN-----LFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 57 ~~~-----~~~~i~~~~~~g~PilGIC~G 80 (247)
.+ -.+++.+.. +.+|++||..-
T Consensus 86 -~gi~v~~~~el~~~~~-~~~~~IaITGT 112 (809)
T PRK14573 86 -RGNRLVHRAELLAELM-QEQISILVSGS 112 (809)
T ss_pred -CCCcEEeHHHHHHHHH-cCCCEEEEECC
Confidence 12 134444443 35689999854
No 333
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=29.80 E-value=2.4e+02 Score=26.62 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.7
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilp 44 (247)
|||.|..+....+ .+...|++.|++++- +.+++|.+|+-
T Consensus 8 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-----~~~~aD~ivin 51 (440)
T PRK14862 8 PKIGFVSLGCPKALVDSERILTQLRAEGYEISP-----SYDGADLVIVN 51 (440)
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECC-----CcccCCEEEEe
Confidence 5789999866433 467889999987662 24579999994
No 334
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.78 E-value=2.3e+02 Score=20.91 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=40.8
Q ss_pred EEEEEecCCChH---HHHHHHHhCC-CeEEEECCc------cCCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLG-VKGVEIRKP------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G-~~v~~~~~~------~~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
||.++...++.. .....|.+.+ ..+...... ..+.+-|.+|+-- |.... ..+.++.+.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e---------~~~~~~~a~~ 71 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETAD---------TLAALRLAKE 71 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHH---------HHHHHHHHHH
Confidence 466666554444 4556777776 666654421 1234567665522 44321 2455566667
Q ss_pred cCCcEEEEehh
Q 025812 70 MGKPVWGTCAG 80 (247)
Q Consensus 70 ~g~PilGIC~G 80 (247)
+|.|+++|+.-
T Consensus 72 ~g~~vi~iT~~ 82 (126)
T cd05008 72 KGAKTVAITNV 82 (126)
T ss_pred cCCeEEEEECC
Confidence 89999999964
No 335
>PRK10481 hypothetical protein; Provisional
Probab=29.48 E-value=2.6e+02 Score=24.13 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=40.1
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEEC-Cc-----c-------CC--CCCCEEEECC-CchhHHHHHHhhCCHHHHH
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIR-KP-----D-------QL--QNVSSLIIPG-GESTTMARLAEYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~-~~-----~-------~l--~~~d~lilpG-G~~~~~~~l~~~~~~~~~i 64 (247)
||+|+.. +.......+.+...|.+++... ++ + .+ ..+|.|++.+ |+...+ .+.+
T Consensus 131 riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~---------~~~l 201 (224)
T PRK10481 131 QVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRH---------RDLL 201 (224)
T ss_pred eEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHH---------HHHH
Confidence 6888883 5666666666666699877532 11 1 12 4799999966 776422 2233
Q ss_pred HHHHHcCCcEEEEe
Q 025812 65 REFVKMGKPVWGTC 78 (247)
Q Consensus 65 ~~~~~~g~PilGIC 78 (247)
++. -|+|++-.+
T Consensus 202 e~~--lg~PVI~~n 213 (224)
T PRK10481 202 QKA--LDVPVLLSN 213 (224)
T ss_pred HHH--HCcCEEcHH
Confidence 333 388987544
No 336
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=29.28 E-value=2.7e+02 Score=22.71 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=38.3
Q ss_pred CEEEEEec--CCChH-----HHHHHHHhCCC---eEEEECCcc------------CCCCCCEEEECC----CchhHHHHH
Q 025812 1 MVVGVLAL--QGSFN-----EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (247)
Q Consensus 1 m~I~vl~~--~G~~~-----~~~~~L~~~G~---~v~~~~~~~------------~l~~~d~lilpG----G~~~~~~~l 54 (247)
+||+|+.- ...+. ...+.|++.|+ ++.+++-|- .-.+||++|.-| |....++.+
T Consensus 11 ~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V 90 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV 90 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence 37887773 33333 23568888884 345554441 124699988877 433333443
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 025812 55 AEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~Pil 75 (247)
... -.....+-.++.++|+.
T Consensus 91 ~~~-v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 91 AQA-VIDGLMRVQLDTEVPVF 110 (158)
T ss_pred HHH-HHHHHHHHHhccCCCEE
Confidence 221 11223333344678864
No 337
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=29.13 E-value=1.1e+02 Score=30.04 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG~ 47 (247)
.+..+|++.|+++... .+. + .++++|.||++||.
T Consensus 210 ~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGt 255 (546)
T PRK14497 210 YLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGT 255 (546)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCc
Confidence 3556699999987643 322 1 13579999999974
No 338
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.85 E-value=3.8e+02 Score=23.10 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=43.7
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
+|.|+....+.. .+...|.+.|..+....+.. .+.+-|.+|+-. |.... ..+.++.+.+
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~---------~~~~~~~ak~ 200 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRE---------LNLAADEALR 200 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHH---------HHHHHHHHHH
Confidence 567777654433 45567788898877654432 355667766632 44321 2445566667
Q ss_pred cCCcEEEEehh
Q 025812 70 MGKPVWGTCAG 80 (247)
Q Consensus 70 ~g~PilGIC~G 80 (247)
+|.|+++|+.-
T Consensus 201 ~ga~iI~IT~~ 211 (278)
T PRK11557 201 VGAKVLAITGF 211 (278)
T ss_pred cCCCEEEEcCC
Confidence 89999999864
No 339
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=28.51 E-value=56 Score=29.63 Aligned_cols=42 Identities=19% Similarity=0.439 Sum_probs=26.5
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEehhH
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTCAGL 81 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC~G~ 81 (247)
+.++|.||+ ||+ +.+.++.|. .+-|+++++ ..-|...||--|
T Consensus 170 I~~ADlIvlgPGSlyTSIiPnLl-----v~gI~eAI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 170 IREADLIILGPGSLYTSIIPNLL-----VPEIAEALRESKAPKVYVCNLM 214 (310)
T ss_pred HHhCCEEEECCCcCHHHhchhcC-----chhHHHHHHhCCCCEEEEeCCC
Confidence 568999999 666 344455442 233444443 468999999743
No 340
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=28.51 E-value=88 Score=31.33 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCeEEEECCcc-----CCCCCCEEEECCCchhH----HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 14 EHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~-----~l~~~d~lilpGG~~~~----~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
-++++|.=+-++|..++-.+ -++++|.||=.|...++ ..|.. ..+...||+++.+|.-++||+
T Consensus 469 GilEaLSGlp~dV~FISFdDi~~~gi~~didViINaGdA~TA~SGG~~W~d--~~iv~~lr~fV~~GGGfIGVG 540 (716)
T PF09508_consen 469 GILEALSGLPFDVEFISFDDIRENGILEDIDVIINAGDAGTAWSGGENWKD--PKIVTALREFVYNGGGFIGVG 540 (716)
T ss_dssp HHHHHHHTSSSEEEEEEHHHHHHH-S-TT--EEEEEESTTSTTT-GGGGG---HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhcCCCceeEEecHHHHhhcCCcccCCEEEecCcccccccCccccCC--HHHHHHHHHHHHcCCCEEEcC
Confidence 34455554456777776432 35789999988732211 11221 245789999999999999997
No 341
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=28.34 E-value=1.5e+02 Score=29.23 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCCEEEE----CCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe-----hhHHHHHHhh
Q 025812 37 NVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC-----AGLIFLANKA 88 (247)
Q Consensus 37 ~~d~lil----pGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC-----~G~QlL~~~~ 88 (247)
+..+|+| |||...+.+.+ .+.|+++.+.++|+..-+ .|..+|+.+.
T Consensus 346 ~VkaIVLrinSpGGs~~ase~i------~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aa 400 (584)
T TIGR00705 346 DIKAVVLRINSPGGSVFASEII------RRELARAQARGKPVIVSMGAMAASGGYWIASAA 400 (584)
T ss_pred CceEEEEEecCCCCCHHHHHHH------HHHHHHHHhCCCcEEEEECCccccHHHHHHHhC
Confidence 4567766 67754333333 345555556789998764 3345555544
No 342
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=28.32 E-value=3.4e+02 Score=23.11 Aligned_cols=70 Identities=10% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
||-|+....+.. .+...|.+.|..+..+.+.. .+.+-|.+|+ +- |.... ..+.++.+.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~---------~~~~~~~a~~ 72 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLE---------LLNLIPHLKR 72 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 466666543332 45567778898877654322 3455677665 22 44321 2455666777
Q ss_pred cCCcEEEEehh
Q 025812 70 MGKPVWGTCAG 80 (247)
Q Consensus 70 ~g~PilGIC~G 80 (247)
+|.|+++||..
T Consensus 73 ~g~~ii~iT~~ 83 (268)
T TIGR00393 73 LSHKIIAFTGS 83 (268)
T ss_pred cCCcEEEEECC
Confidence 89999999964
No 343
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=28.18 E-value=1.1e+02 Score=16.69 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=20.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~ 31 (247)
|+|.+++.+-... .+.+.++..|.++....+
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 32 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATD 32 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCC
Confidence 6777777543443 566788888887666554
No 344
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=28.09 E-value=3.6e+02 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEEC--Cc-c------C--CCCCCEEEECCCchh
Q 025812 14 EHIAALKRLGVKGVEIR--KP-D------Q--LQNVSSLIIPGGEST 49 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~--~~-~------~--l~~~d~lilpGG~~~ 49 (247)
.+.+.|++.|.+..... .. + + ...+|.||..||..+
T Consensus 24 ~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 24 EVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred HHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 67889999999876542 22 1 1 247899999887543
No 345
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=27.94 E-value=1.2e+02 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCeEEEE---CCc-cC--------CCCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~~--------l~~~d~lilpGG~ 47 (247)
.+...|++.|+++... .+. +. ++++|.||.+||.
T Consensus 217 ~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~ 262 (633)
T PRK14498 217 TLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGT 262 (633)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCC
Confidence 5678899999987643 322 11 2479999999974
No 346
>PLN02522 ATP citrate (pro-S)-lyase
Probab=27.89 E-value=3.1e+02 Score=27.40 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEE---EECCcc--------------CCCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGV---EIRKPD--------------QLQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~---~~~~~~--------------~l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|+|++=+|++. ++.+++.+.|.-+. -+-+.. +-++.+.|++-| |.++ +.+
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e--------~~f 240 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDE--------YSL 240 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhH--------HHH
Confidence 488999889888 67788998876332 222221 114667777754 4332 123
Q ss_pred HHHHHHHHHcCCcEEEEehhHHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.+.+++.. .+|||.+.|.|-.-
T Consensus 241 ~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 241 VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHhc-CCCCEEEEeccCCC
Confidence 55666654 68999999988744
No 347
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.89 E-value=2.7e+02 Score=20.98 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=27.7
Q ss_pred EEEEEec---CCChH-HHHHHHHhCCCeEEEECCcc-------------CC-CCCCEEEECCC
Q 025812 2 VVGVLAL---QGSFN-EHIAALKRLGVKGVEIRKPD-------------QL-QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~---~G~~~-~~~~~L~~~G~~v~~~~~~~-------------~l-~~~d~lilpGG 46 (247)
+|||+.. .+.+. -+++.|++.|+++..+++.. +. ...|.+++.-.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC
Confidence 5788875 35565 47788999999988876531 22 46788877543
No 348
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.86 E-value=3e+02 Score=21.55 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=30.2
Q ss_pred EEEEEecCCChH-----HHHHHHHhCCCeEEEECC---ccCC------CCCCEEEECC
Q 025812 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRK---PDQL------QNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~---~~~l------~~~d~lilpG 45 (247)
||.+-..+|+.+ -+..+|+..|++++.... ++++ .++|.|.++-
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 455555677665 345789999999998643 2222 4789998876
No 349
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=27.86 E-value=1.2e+02 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=22.0
Q ss_pred CCChHHHHH----HHHhCCCeEEEEC---CccCCCCCCEEEECCC
Q 025812 9 QGSFNEHIA----ALKRLGVKGVEIR---KPDQLQNVSSLIIPGG 46 (247)
Q Consensus 9 ~G~~~~~~~----~L~~~G~~v~~~~---~~~~l~~~d~lilpGG 46 (247)
.||-..+++ .|...+..+.+.. ...++.++|.||+.++
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gsp 52 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSP 52 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEE
Confidence 566554444 4443333333333 2246889999999875
No 350
>PRK15029 arginine decarboxylase; Provisional
Probab=27.66 E-value=1.3e+02 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=32.4
Q ss_pred CEEEEEecCCC---------hHHHHHHHHhCCCeEEEECCccC----C---CCCCEEEE
Q 025812 1 MVVGVLALQGS---------FNEHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~---------~~~~~~~L~~~G~~v~~~~~~~~----l---~~~d~lil 43 (247)
|||.|++-+-. ...+...|+..|+++..+.+.++ + ..+|++|+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL 59 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF 59 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE
Confidence 89988885442 44688999999999998876542 2 35898887
No 351
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=27.36 E-value=14 Score=30.29 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHc---CCcEEEEehhHHHHH
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKM---GKPVWGTCAGLIFLA 85 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~---g~PilGIC~G~QlL~ 85 (247)
..|.+|+|| +++..-.+|-.-.++.|........ ..+.+|+|+-.|++-
T Consensus 117 ~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~~~~~~~~igl~~~~q~~~ 169 (186)
T PF01812_consen 117 EIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPPGRKKPLKIGLAFDFQIVD 169 (186)
T ss_dssp G-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS-SS--EEEEEE-GGGEES
T ss_pred cCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhcccCCCeEEEEeehhheeC
Confidence 689999999 6653322222223343322233333 578999999988755
No 352
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=27.32 E-value=3.9e+02 Score=23.23 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=41.7
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
+|.|+...++.. .+...|.+.|..+..+.+.. .+.+-|.+|+ +- |.... +.+.++.+.+
T Consensus 142 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~---------~~~~~~~ak~ 212 (292)
T PRK11337 142 QRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSD---------VIEAVELAKK 212 (292)
T ss_pred eEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 466777644432 34566778898887765432 2456676655 33 43321 1344555666
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
.|.|+++|+.
T Consensus 213 ~g~~ii~IT~ 222 (292)
T PRK11337 213 NGAKIICITN 222 (292)
T ss_pred CCCeEEEEeC
Confidence 8999999984
No 353
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.27 E-value=2.4e+02 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=22.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
+|.|+...+.=.+.++.|.+.|++|...+
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVID 36 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEc
Confidence 58888887766676788999999887654
No 354
>PRK06851 hypothetical protein; Provisional
Probab=27.19 E-value=1.9e+02 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
.+.+.+.+.|.++.++..+-+.++.|+||||.
T Consensus 233 ~i~~~a~~~G~~v~~~hC~~dPdslD~viIPe 264 (367)
T PRK06851 233 KIAKAAEERGFDVEVYHCGFDPDSLDMVIIPE 264 (367)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcceEEecc
Confidence 56777888899999998888778899999998
No 355
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=26.94 E-value=2e+02 Score=27.54 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred EEEEEecCC-----ChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCc
Q 025812 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G-----~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~ 47 (247)
+|||+++.+ .+..+.+.+++.|++.++.+. .+|+--|+.+.-||.
T Consensus 187 ~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~-~~L~y~~g~L~~~~~ 236 (445)
T PF14403_consen 187 NIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDP-RDLEYRDGRLYAGGR 236 (445)
T ss_pred cEEEEecccCCccchHHHHHHHHHHcCCceEecCh-HHceecCCEEEECCE
Confidence 589999865 355788999999999887644 455555555555664
No 356
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=26.84 E-value=68 Score=29.06 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=26.4
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEehhH
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTCAGL 81 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC~G~ 81 (247)
+.++|.||+ ||+ +.+....|. .+-|+++++ ..-|...||--+
T Consensus 172 I~~ADlIvlgPGSlyTSI~P~Ll-----v~gi~eAi~~s~a~kV~V~ni~ 216 (309)
T cd07044 172 IEKADNIVIGPGSLYTSILPNIS-----VPGIREALKKTXAKKVYVSNIX 216 (309)
T ss_pred HHhCCEEEECCCcCHHHhhhhcC-----cHhHHHHHHhcCCCeEEECCCC
Confidence 568899999 666 344455442 334444444 356899999663
No 357
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=26.80 E-value=1.3e+02 Score=24.36 Aligned_cols=44 Identities=9% Similarity=-0.036 Sum_probs=31.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilp 44 (247)
|+|.|++.+-... .+...|+..|+.+....+..+ -..+|.+++-
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild 51 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILD 51 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEE
Confidence 8998888655555 467788889998777665432 2468998873
No 358
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.68 E-value=4.2e+02 Score=22.89 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=37.2
Q ss_pred EEEEEecC--CChH-----HHHHHHHh--CCCeEEEECCcc----------CC--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQ--GSFN-----EHIAALKR--LGVKGVEIRKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~--G~~~-----~~~~~L~~--~G~~v~~~~~~~----------~l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
||+|+... ..|. .+.+++++ .|+.+.+..... .+ ..+|++|+....++..
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~--------- 71 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA--------- 71 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH---------
Confidence 57766642 2222 45677777 677777654321 11 4799999854322111
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025812 61 FPALREFVKMGKPVWGT 77 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGI 77 (247)
.+.++++.+.++|+.-+
T Consensus 72 ~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 72 QTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 23344555568887654
No 359
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=26.50 E-value=2.9e+02 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCeEEEECCcc----------CC--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~----------~l--~~~d~lilpGG 46 (247)
.+.+++++.|+.+++..... .+ ..+|++|+...
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45678888999988864321 11 46899998543
No 360
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=26.48 E-value=49 Score=26.37 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=41.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC-Cc-----c-----------CCCCCCEEEECCCchhHHHHHHhhCCHHHHH
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-KP-----D-----------QLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-~~-----~-----------~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i 64 (247)
||+++- .+..+++.|++.+.++.++. ++ . -++.+|.++++|..-- +.. .+.|
T Consensus 13 ~V~~VG---~f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlv-------N~T-i~~i 81 (147)
T PF04016_consen 13 KVGMVG---YFQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLV-------NGT-IDDI 81 (147)
T ss_dssp EEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCC-------TTT-HHHH
T ss_pred EEEEEc---CcHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeee-------cCC-HHHH
Confidence 566665 46667888988899988874 22 0 1578999999995310 111 2333
Q ss_pred HHHHHcCCcEEEEehhHHHHHHhh
Q 025812 65 REFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 65 ~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
.+...+++++.=+.-..++.-..+
T Consensus 82 L~~~~~~~~vil~GpS~~~~P~~l 105 (147)
T PF04016_consen 82 LELARNAREVILYGPSAPLHPEAL 105 (147)
T ss_dssp HHHTTTSSEEEEESCCGGS-GGGG
T ss_pred HHhCccCCeEEEEecCchhhHHHH
Confidence 333334555554444445554443
No 361
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=26.38 E-value=71 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=29.9
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCcc-CCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~-~l~~~d~lilpG 45 (247)
|||+|+. ..|++..+.+.|+.+++...- ... .-.+.|.||+.|
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~--~~~~~~~~~d~lv~lG 45 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKR--VGTVTHPEGRRAVFVG 45 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCcccc--CccccCCCCCEEEEEC
Confidence 8998887 699999999999998764210 000 011368888888
No 362
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.27 E-value=3.5e+02 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=29.9
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEEC-CCc
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIP-GGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilp-GG~ 47 (247)
|||.|..+....+ .+...|++.|++.+- +.+++|.+|+- =+.
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~-----~~~~ADi~iiNTC~v 48 (440)
T PRK14334 1 MKAHIITYGCQMNEYDTHLVESELVSLGAEIVD-----SVDEADFVLVNTCAV 48 (440)
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-----CcccCCEEEEeccce
Confidence 7899999866433 467889889987652 24578999993 354
No 363
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=26.27 E-value=51 Score=27.70 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCH-HHHHHHHHHc---CC-cEEEEehhHHHHH
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNL-FPALREFVKM---GK-PVWGTCAGLIFLA 85 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~-~~~i~~~~~~---g~-PilGIC~G~QlL~ 85 (247)
.+|++|+|| +++..-.++-.-.+. .+.++++... .+ -.+|+|+=-|++.
T Consensus 128 ~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI~~ 182 (200)
T KOG3093|consen 128 PLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILS 182 (200)
T ss_pred cceEEEecccccchhhhhccCCcchHHHHHHHHHHhccccCchhhhhhhhHhhcc
Confidence 479999999 776543444333333 3456655542 33 4579999999877
No 364
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.15 E-value=4.3e+02 Score=24.14 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=42.9
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--cC--------CCCCCEEEECCCchhHHHHHHhhCCHHHHHH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--DQ--------LQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--~~--------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~ 65 (247)
+|+|+-.+|. +..+.+.++..|.+++....+ .| ..+.|.+++|=.... .. .....+.
T Consensus 161 ~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i-~s------~~~~l~~ 233 (322)
T COG2984 161 SIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI-VS------AIESLLQ 233 (322)
T ss_pred eEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH-HH------HHHHHHH
Confidence 6889988886 225667888899998865432 11 368899999853211 11 1233455
Q ss_pred HHHHcCCcEEE
Q 025812 66 EFVKMGKPVWG 76 (247)
Q Consensus 66 ~~~~~g~PilG 76 (247)
.+.+.++|+++
T Consensus 234 ~a~~~kiPli~ 244 (322)
T COG2984 234 VANKAKIPLIA 244 (322)
T ss_pred HHHHhCCCeec
Confidence 55557888765
No 365
>PRK10342 glycerate kinase I; Provisional
Probab=26.11 E-value=59 Score=30.35 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=25.5
Q ss_pred cCCCCCCEEEECC-C-chh--HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 33 DQLQNVSSLIIPG-G-EST--TMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 33 ~~l~~~d~lilpG-G-~~~--~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
+.++++| |||+| | .+. .+.+ -.....+.+.+.++|++.||.-.
T Consensus 280 ~~l~~AD-LVITGEG~~D~QTl~GK-----~p~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 280 EHIHDCT-LVITGEGRIDSQSIHGK-----VPIGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred HHhccCC-EEEECCCcCcccccCCc-----cHHHHHHHHHHhCCCEEEEeccc
Confidence 3467889 56666 6 332 2221 12344455555799999999753
No 366
>PRK06455 riboflavin synthase; Provisional
Probab=25.97 E-value=3.6e+02 Score=21.91 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=27.5
Q ss_pred CEEEEEecCCC---hH-HHHHHHHhCC--CeEEEECCcc------------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGS---FN-EHIAALKRLG--VKGVEIRKPD------------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~---~~-~~~~~L~~~G--~~v~~~~~~~------------~l~~~d~lilpG 45 (247)
|||+|++..=| .. ..++.|++.| .++.++.-|- +-..||++|--|
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG 64 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALG 64 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 58999884212 11 3457788844 5665555442 114699998877
No 367
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=25.88 E-value=2.9e+02 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+++++.|+.+.++....+ + ..+|+||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 566788889999887653211 1 37899999764
No 368
>PHA02239 putative protein phosphatase
Probab=25.76 E-value=3.6e+02 Score=23.14 Aligned_cols=37 Identities=11% Similarity=0.408 Sum_probs=25.5
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||+++. ..|++..+.+.|+....+ ....|.||+.|-
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~---------~~~~d~li~lGD 38 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNE---------RKPEETIVFLGD 38 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhc---------CCCCCEEEEecC
Confidence 8887777 589998888888765321 122577888873
No 369
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=25.64 E-value=4.4e+02 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=18.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGV 27 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~ 27 (247)
|||+|+.. |++. .+++.+.+. +.++.
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~ 29 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVD 29 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEE
Confidence 69999998 8877 455666654 45544
No 370
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.60 E-value=3e+02 Score=20.76 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=32.7
Q ss_pred EEEEEecCCChHH-----HHHHHHhCCCeEEEECC---ccC------CCCCCEEEECCCchhHHHH
Q 025812 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRK---PDQ------LQNVSSLIIPGGESTTMAR 53 (247)
Q Consensus 2 ~I~vl~~~G~~~~-----~~~~L~~~G~~v~~~~~---~~~------l~~~d~lilpGG~~~~~~~ 53 (247)
||.+-..+|+.+. +...|+..|++++.... +++ -.++|.+.+++...+..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~ 66 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTL 66 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHH
Confidence 3444445676552 35689999999987643 222 1478999999864433333
No 371
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.45 E-value=1e+02 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred CEEEEEecC----CChH----HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQ----GSFN----EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~----G~~~----~~~~~L~~~G~~v~~~~ 30 (247)
|||+||.-. |+-. .+.+.+++.|+++++++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~ 38 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVID 38 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999852 3322 45677777799988764
No 372
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.37 E-value=1.8e+02 Score=22.31 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCeEEEECCccCCCCCCEEEECC--CchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG--G~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
.+.++|++.|.++-.+++-.+ +|.+++=| |...... .+....++++++ +.|++
T Consensus 18 ~l~~~l~~~~~~v~~~kp~~~---~d~vliEGaGg~~~p~~---~~~~~~d~~~~~---~~~vl 72 (134)
T cd03109 18 ILARALKEKGYRVAPLKPVQT---YDFVLVEGAGGLCVPLK---EDFTNADVAKEL---NLPAI 72 (134)
T ss_pred HHHHHHHHCCCeEEEEecCCC---CCEEEEECCCccccCCC---CCCCHHHHHHHh---CCCEE
Confidence 478999999999998876554 89999944 5322111 112345666654 55553
No 373
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=25.32 E-value=1.4e+02 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=30.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilp 44 (247)
|+|.|++.+-.+. .+...|+..|..+..+.+..+ -..+|.+++-
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd 51 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLD 51 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEE
Confidence 7898888655555 467889989988776655432 1357888773
No 374
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=25.28 E-value=2.9e+02 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV 24 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~ 24 (247)
|||+|+.-.|-.. .+++.|.+.+.
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCC
Confidence 6899999888887 78899988665
No 375
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=25.27 E-value=1.6e+02 Score=23.67 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=31.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilp 44 (247)
|+|.|++.+-.+. .+...|+..|..+....+..+ -..+|.+++-
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d 51 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILD 51 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEE
Confidence 8998888665555 466788888987776655432 2468998883
No 376
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=25.15 E-value=1.5e+02 Score=27.71 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred CCCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHc--CCcEEEEe----hhHHHHHHhh
Q 025812 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKM--GKPVWGTC----AGLIFLANKA 88 (247)
Q Consensus 36 ~~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~--g~PilGIC----~G~QlL~~~~ 88 (247)
.....|+++| |+|+... ..+|++..+. +.|+++.| .|+.+++.+-
T Consensus 233 ~~~~cILITgKGyPD~aT--------R~fL~~L~~~~p~lPv~~LvD~DP~Gi~I~~tYk 284 (384)
T PLN00060 233 NHIPCILITAKGYPDLAT--------RFILHRLSQTFPNLPILALVDWNPAGLAILCTYK 284 (384)
T ss_pred hhCCEEEEecCCCCCHHH--------HHHHHHHHHhcCCCCEEEEECCCcchHHHHHHhh
Confidence 3457899999 9986432 2344444443 79999998 7999988874
No 377
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.94 E-value=2.5e+02 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.9
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 3 VGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
|+|+...|.=.++++.|.+.|++|...+
T Consensus 9 ~~v~G~G~sG~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 9 HIVVGLGKTGLSVVRFLARQGIPFAVMD 36 (448)
T ss_pred EEEEeecHhHHHHHHHHHhCCCeEEEEe
Confidence 6677766655568888888888776654
No 378
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=24.93 E-value=5.4e+02 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLG 23 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G 23 (247)
|||.|+...|.=.++++.|-+.+
T Consensus 1 m~i~viGvGg~G~niv~~l~~~~ 23 (349)
T cd02202 1 MRVLIIGVGQAGGRIVDALNRHD 23 (349)
T ss_pred CEEEEEEeCCcHHHHHHHHHHhC
Confidence 99999999877667778777766
No 379
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=24.90 E-value=5.1e+02 Score=23.30 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=46.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE-E---CCc-------------cCCCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE-I---RKP-------------DQLQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~-~---~~~-------------~~l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|+|++-+|+.. ++.+.|.+.|.=... + -++ ++-++.+.|++-| |..+. + .
T Consensus 147 ~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe-~-------A 218 (293)
T COG0074 147 NIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEE-E-------A 218 (293)
T ss_pred ceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHH-H-------H
Confidence 489999999988 788999988763221 1 111 1124678888866 44322 1 1
Q ss_pred HHHHHHHHHcCCcEEEEehhHHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.++|++ ...+||+.+-=+|...
T Consensus 219 A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 219 AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHH-hccCCCEEEEEeccCC
Confidence 456666 3346999998777543
No 380
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.88 E-value=3e+02 Score=22.96 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCeEEEECCcc----------CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 14 EHIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~----------~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
.+.+++++.|+.+.+..... .+ ..+|++|+.+...+... ...+.++++.+.+.|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH------ADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc------chhHHHHHHHhCCCCEEEE
Confidence 46678888999987654321 11 47899998653211100 0123344445567787655
No 381
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=24.83 E-value=5.4e+02 Score=23.48 Aligned_cols=82 Identities=18% Similarity=0.076 Sum_probs=46.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECC-----cc----------CC--CCCCEEEECCC--chhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK-----PD----------QL--QNVSSLIIPGG--ESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~-----~~----------~l--~~~d~lilpGG--~~~~~~~l~~~~~~~~ 62 (247)
+|+|... ..-..+.+.|++.|++++.++. .. .+ .++|.||++-. ....++++.+ .++..
T Consensus 13 rIlvtr~-~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l~~-~~~~~ 90 (381)
T PRK07239 13 TVGVTAA-RRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAADG-WGLAD 90 (381)
T ss_pred EEEEecc-CCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHHHH-cCChH
Confidence 6888874 3556788999999999876431 11 12 46999999753 2222333332 12212
Q ss_pred HHHHHHHcCCcEEEEehhHHHHHH
Q 025812 63 ALREFVKMGKPVWGTCAGLIFLAN 86 (247)
Q Consensus 63 ~i~~~~~~g~PilGIC~G~QlL~~ 86 (247)
.+.+.. .+.++++|.-+---..+
T Consensus 91 ~~~~~l-~~~~i~aVG~~Ta~aL~ 113 (381)
T PRK07239 91 ELLEAL-SSARLLARGPKATGAIR 113 (381)
T ss_pred HHHHHH-cCCeEEEECccHHHHHH
Confidence 222222 47888888755444333
No 382
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.80 E-value=3e+02 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=22.7
Q ss_pred HHHHHHhCCCeEEEEC---CccC------CCCCCEEEECCC
Q 025812 15 HIAALKRLGVKGVEIR---KPDQ------LQNVSSLIIPGG 46 (247)
Q Consensus 15 ~~~~L~~~G~~v~~~~---~~~~------l~~~d~lilpGG 46 (247)
+...|+..|++|+... ++++ -.++|.+.+++-
T Consensus 22 v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCc
Confidence 4578999999998643 2222 157899999983
No 383
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=24.74 E-value=1.1e+02 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=25.9
Q ss_pred CEEEEEecC--CChH---HHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQ--GSFN---EHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~--G~~~---~~~~~L~~~G~~v~~~~~~ 32 (247)
|||+++..+ |.+. .+.++|++.|++|+++..+
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 899999875 4444 6789999999999987665
No 384
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.69 E-value=4.3e+02 Score=22.49 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
.+.+++++.|+.+.+.....+ + ..+|++|+.+...+.. .+.++++.+.++|+..+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~---------~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 20 NFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEAL---------ASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhH---------HHHHHHHHHCCCCEEEE
Confidence 566788889999888754311 1 4799999865432211 12233444567887655
No 385
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.55 E-value=46 Score=26.00 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCeEEEE---CCc-c--------CCCCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~lilpGG~ 47 (247)
.+.++|++.|+++... .+. + .++++|.||..||.
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~ 66 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGT 66 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSS
T ss_pred HHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCc
Confidence 5778999999987643 322 2 13578999999863
No 386
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=24.54 E-value=1.7e+02 Score=26.91 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=34.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~------~l~~~d~lilpG 45 (247)
|+|+|+.--|.+. ++..+|++.|.++..+.... .+.++|.||+.-
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilav 150 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSV 150 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeC
Confidence 4799987448887 78899999999988775321 146799999975
No 387
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.49 E-value=4.1e+02 Score=22.06 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=27.8
Q ss_pred EEEEEecC--CChH-----HHHHHHHh-CCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQ--GSFN-----EHIAALKR-LGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~--G~~~-----~~~~~L~~-~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
||+|+..+ ..|. .+.+++++ .|+++.+.....+ + ..+|++|+.+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 47776632 2222 46677888 8999887643211 1 37899998653
No 388
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.27 E-value=3e+02 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=29.1
Q ss_pred EEEEecCCChH-----HHHHHHHhCCCeEEEECC---ccC------CCCCCEEEECCC
Q 025812 3 VGVLALQGSFN-----EHIAALKRLGVKGVEIRK---PDQ------LQNVSSLIIPGG 46 (247)
Q Consensus 3 I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~---~~~------l~~~d~lilpGG 46 (247)
|.+-..+|+.+ -+...|+..|++++.... +++ -.++|.|.++..
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 44444566655 356899999999976532 122 147899999875
No 389
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=24.01 E-value=3.6e+02 Score=21.23 Aligned_cols=57 Identities=26% Similarity=0.296 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 9 ~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
.|.-.+....|.++|.++..+. +|.+++.|..+. .+. ..+.++.+.+.+.|++-=..
T Consensus 36 GG~~~n~a~~l~~LG~~~~~~~-------~~~v~i~~~~~~-~~~------~~~~~~~~~~~~~~v~~D~~ 92 (196)
T cd00287 36 GGGAANVAVALARLGVSVTLVG-------ADAVVISGLSPA-PEA------VLDALEEARRRGVPVVLDPG 92 (196)
T ss_pred CCcHHHHHHHHHHCCCcEEEEE-------ccEEEEecccCc-HHH------HHHHHHHHHHcCCeEEEeCC
Confidence 4667788899999999988877 899999885432 111 12334444445777654444
No 390
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.79 E-value=3.1e+02 Score=20.44 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=38.6
Q ss_pred EEEEEecCCChH---HHHHHHHhC-CCeEEEECCc-------cCCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRL-GVKGVEIRKP-------DQLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFV 68 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~-G~~v~~~~~~-------~~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~ 68 (247)
||-++....+.. .....+++. |..+....+. ..+.+-|.+|+ +- |.... ..+.++.+.
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~---------~~~~~~~a~ 71 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKE---------TVAAAKFAK 71 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChH---------HHHHHHHHH
Confidence 355666544433 455677776 5666554322 12445577655 33 44321 234455666
Q ss_pred HcCCcEEEEeh
Q 025812 69 KMGKPVWGTCA 79 (247)
Q Consensus 69 ~~g~PilGIC~ 79 (247)
++|.|+++|+.
T Consensus 72 ~~g~~vi~iT~ 82 (120)
T cd05710 72 EKGATVIGLTD 82 (120)
T ss_pred HcCCeEEEEEC
Confidence 67999999985
No 391
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=23.56 E-value=5e+02 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=18.1
Q ss_pred CEEEEEecCCChH-HHHHHHHh--CCCeEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKR--LGVKGVE 28 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~--~G~~v~~ 28 (247)
|||+|+.. |... .+.+.|.. .++++..
T Consensus 7 irIGIIG~-G~IG~~~a~~L~~~~~~~el~a 36 (271)
T PRK13302 7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSA 36 (271)
T ss_pred eEEEEECc-cHHHHHHHHHHHhcCCCeEEEE
Confidence 58999996 6665 45666665 3677653
No 392
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.49 E-value=2.7e+02 Score=26.19 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=29.7
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cc
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~ 47 (247)
|||.|..+....+ .+...|.+.|++.+- +.+++|.+|+-- +.
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~-----~~~~aDviiiNTC~v 48 (437)
T PRK14331 1 MKYYIKTFGCQMNFNDSEKIKGILQTLGYEPAD-----DWEEADLILVNTCTI 48 (437)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-----CcccCCEEEEeCcce
Confidence 8999999966433 467888889976542 235689999933 53
No 393
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=23.38 E-value=3.5e+02 Score=22.54 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCcEEEEehhH
Q 025812 62 PALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC~G~ 81 (247)
+.|+.+...++|+.+.+-|+
T Consensus 61 ~~l~~~~~~~kpVia~v~g~ 80 (211)
T cd07019 61 AELAAARAAGKPVVVSAGGA 80 (211)
T ss_pred HHHHHHHhCCCCEEEEECCe
Confidence 44555555699999876444
No 394
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=23.17 E-value=4.5e+02 Score=22.00 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCeEEEECCcc----CCCCCCEEEECC
Q 025812 14 EHIAALKRLGVKGVEIRKPD----QLQNVSSLIIPG 45 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~----~l~~~d~lilpG 45 (247)
.+.+++++.|+.+.+..... ....+|++|+.+
T Consensus 25 gi~~~~~~~g~~~~~~~~~~~~~~~~~~vdgii~~~ 60 (270)
T cd01544 25 GIEKRAQELGIELTKFFRDDDLLEILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHcCCEEEEEeccchhHHhccCcCEEEEec
Confidence 45678888999988765422 235789999865
No 395
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=23.14 E-value=3.4e+02 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=21.9
Q ss_pred CEEEEEecCCC--------hHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGS--------FNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~--------~~~~~~~L~~~G~~v~~~~ 30 (247)
.+|+|++..+. +..-++.|+..|+++++-.
T Consensus 1 d~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~ 38 (308)
T cd07062 1 DTIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGP 38 (308)
T ss_pred CeEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEec
Confidence 47999997543 3345688999999988753
No 396
>PRK09453 phosphodiesterase; Provisional
Probab=22.92 E-value=1.5e+02 Score=23.85 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=22.9
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|||+|++ ..|++..+.+.++.+- -.++|.||+.|
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~-----------~~~~d~ii~lG 35 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFA-----------QSGADWLVHLG 35 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHH-----------hcCCCEEEEcc
Confidence 9999999 4788765555444331 13577888877
No 397
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=22.87 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
.+|++|+.= |..+. +-+++.+.|.+++..|+|+|=.=
T Consensus 93 ~~DLlivNkFGk~Ea-----~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 93 GADLLIVNKFGKQEA-----EGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred CCCEEEEcccHHhhh-----cCCCHHHHHHHHHHCCCCEEEEE
Confidence 366666654 32221 23567888888888899987443
No 398
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.81 E-value=3.1e+02 Score=26.19 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEE-CCCchhHHHHHHhhCCHHHHHHHHHHcC---
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLII-PGGESTTMARLAEYHNLFPALREFVKMG--- 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lil-pGG~~~~~~~l~~~~~~~~~i~~~~~~g--- 71 (247)
|||.|..+....+ .+...|+..|++ .. .++.+++|.+|+ +=+..+..+ ......|+++.+.+
T Consensus 3 ~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~-~~---~~~~~eADvviiNTC~V~~~a~-----~k~~~~i~~~~~~~p~~ 73 (437)
T COG0621 3 KKVYIETLGCQMNLYDSERMAGLLEAAGYE-EL---VEDPEEADVVIINTCAVREKAE-----QKVRSAIGELKKLKPDA 73 (437)
T ss_pred ceEEEEecCCCccHHHHHHHHHHHHHcCCc-cc---cCCcccCCEEEEecCeeeehHH-----HHHHHHHHHHHHhCCCC
Confidence 5899999976544 366889999987 22 234457999999 335322111 12345566666655
Q ss_pred CcEEEEehhHHH
Q 025812 72 KPVWGTCAGLIF 83 (247)
Q Consensus 72 ~PilGIC~G~Ql 83 (247)
+-+.+=|++-+-
T Consensus 74 ~iiVtGC~aq~~ 85 (437)
T COG0621 74 KIIVTGCLAQAE 85 (437)
T ss_pred EEEEeCCccccC
Confidence 334444555544
No 399
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=22.70 E-value=4.4e+02 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+++++.|+++.+.....+ + ..+|++|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 455788889999887643211 1 47999999764
No 400
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.52 E-value=2.6e+02 Score=25.21 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=23.7
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
.+++|||-| |....-. .+.+.|+++.++|+||.-.
T Consensus 235 ~~~GlVl~~~G~Gn~p~------~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 235 GAKGLVLEGTGAGNVPP------DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCEEEEEeeCCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 579999966 4322111 1467788888899998876
No 401
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=22.39 E-value=1.8e+02 Score=28.17 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=29.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCC--eEEEEC-------Ccc---------C-----CCCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGV--KGVEIR-------KPD---------Q-----LQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~--~v~~~~-------~~~---------~-----l~~~d~lilpG 45 (247)
|||.++.-.=....+.++++..++ +|.+.. ++. . +..||.|++||
T Consensus 1 m~il~vTG~lA~~~v~~~~~~~~~~~~V~~~~v~VAA~~tp~~i~~~l~~~~~~~~~~~~yD~ilvpG 68 (499)
T TIGR00284 1 MKVLLITGRLAKGLIEGILKESDQEAEVIVLNVHVAGMLSTKTIAKILKSRRDLLERARSVDILLIPG 68 (499)
T ss_pred CeEEEEcchhhHHHHHHHHhcCCCceEEEEcCCeEEEecCHHHHHHHhhcccccccccCCCcEEEeCC
Confidence 899998844455567788887666 443322 111 1 23589999999
No 402
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.36 E-value=3.7e+02 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
.+.+.+++.|+.+.+.....+ + ..+|++|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 466788889999888654321 1 36899998653
No 403
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=22.21 E-value=60 Score=30.01 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.1
Q ss_pred EEeeCCCCCCchHHHHHHHHHHHhcccCcc
Q 025812 186 GTAFHPELTADTRWHSYFLKMMSEVGEGTS 215 (247)
Q Consensus 186 gvQFHPE~s~~~~i~~nfl~~~~~~~~~~~ 215 (247)
-.++|||.+.+ .++.+|++.|.++|--.|
T Consensus 77 p~~wkPe~~~D-~~~lqfCk~CqgYKapRS 105 (414)
T KOG1314|consen 77 PLGWKPENPKD-EMFLQFCKKCQGYKAPRS 105 (414)
T ss_pred CCCCCCCCChh-HHHHHHHhhccCcCCCcc
Confidence 45899999987 588999999999887655
No 404
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.10 E-value=1.9e+02 Score=25.39 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=36.8
Q ss_pred CChHHHHHHHHhCCCeEEEECCc----------cC----------CCCCCEEEECC---CchhHHHHHHhhCCHHHHHHH
Q 025812 10 GSFNEHIAALKRLGVKGVEIRKP----------DQ----------LQNVSSLIIPG---GESTTMARLAEYHNLFPALRE 66 (247)
Q Consensus 10 G~~~~~~~~L~~~G~~v~~~~~~----------~~----------l~~~d~lilpG---G~~~~~~~l~~~~~~~~~i~~ 66 (247)
++..+++++-+++|+++.++.+- .+ ...+|+||++| |.+..++. .+.+|+
T Consensus 125 ~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~-------l~~vr~ 197 (254)
T PF03437_consen 125 GCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEK-------LKRVRE 197 (254)
T ss_pred ccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHH-------HHHHHh
Confidence 45667888888899987664321 01 23589999999 33333333 234455
Q ss_pred HHHcCCcEEEEehh
Q 025812 67 FVKMGKPVWGTCAG 80 (247)
Q Consensus 67 ~~~~g~PilGIC~G 80 (247)
.. +.|+| +..|
T Consensus 198 ~~--~~PVl-vGSG 208 (254)
T PF03437_consen 198 AV--PVPVL-VGSG 208 (254)
T ss_pred cC--CCCEE-EecC
Confidence 44 38887 4444
No 405
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=21.92 E-value=1.5e+02 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=22.9
Q ss_pred CEEEEEecCC----ChHHHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G----~~~~~~~~L~~~G~~v~~~~~ 31 (247)
|+|.|-.-+| .+..+.++|++.| +|.++.+
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP 34 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG-EVTVVAP 34 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC-CEEEEeC
Confidence 8998777677 3557889999988 8877644
No 406
>PRK08818 prephenate dehydrogenase; Provisional
Probab=21.90 E-value=2.3e+02 Score=26.25 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=33.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEEEECCcc--------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGVEIRKPD--------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~~~~~~~--------~l~~~d~lilpG 45 (247)
++|+|+...|-+. ++.++|++. +.++..++..+ .+.++|.||+.=
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeC
Confidence 4899999878887 788999975 77776554311 256899999963
No 407
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.69 E-value=4e+02 Score=23.89 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=10.4
Q ss_pred CCCCCCEEEECCC
Q 025812 34 QLQNVSSLIIPGG 46 (247)
Q Consensus 34 ~l~~~d~lilpGG 46 (247)
++.++|.+|++-|
T Consensus 68 ~~~~adivvitaG 80 (312)
T cd05293 68 VTANSKVVIVTAG 80 (312)
T ss_pred HhCCCCEEEECCC
Confidence 5678999999665
No 408
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=21.60 E-value=2.6e+02 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+.++++...++|+.+.+-|+
T Consensus 56 ~~~i~~~~~~~kpvia~v~g~ 76 (208)
T cd07023 56 YREIRRLRKAKKPVVASMGDV 76 (208)
T ss_pred HHHHHHHHhcCCcEEEEECCc
Confidence 445666555699999866543
No 409
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.43 E-value=2.7e+02 Score=26.15 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=28.2
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEECCccCCCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~~~l~~~d~lilp 44 (247)
|||.|..+....+ .+...|++.|++.+. . .+++|.+++.
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~--~---~~~aDlvvin 44 (434)
T PRK14330 1 MKFYIKTFGCQMNENDSETMAGLLKKEGFEPAS--N---PEEADVVIIN 44 (434)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHCcCEECC--C---cccCCEEEEE
Confidence 8999999866433 467888888887542 2 2468999994
No 410
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=21.32 E-value=5.3e+02 Score=22.14 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=27.4
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEE-CCcc----------CC--CCCCEEEECCC
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEI-RKPD----------QL--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~-~~~~----------~l--~~~d~lilpGG 46 (247)
+|+|+... .+ +. .+.+++++.|+.+.++ .... .+ ..+|+||+.+.
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 47766632 22 22 4567788889998875 2211 11 46899999753
No 411
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=21.32 E-value=2.8e+02 Score=20.15 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhCCCeEEE-ECC--cc-------------CCCCCCEEEECCC
Q 025812 11 SFNEHIAALKRLGVKGVE-IRK--PD-------------QLQNVSSLIIPGG 46 (247)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~-~~~--~~-------------~l~~~d~lilpGG 46 (247)
+|....+.|+..|..|+- ... ++ .|..||.|++.+|
T Consensus 17 ~f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~g 68 (92)
T PF14359_consen 17 AFNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPG 68 (92)
T ss_pred HHHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCC
Confidence 355788999999977662 111 21 1468999988655
No 412
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=1.6e+02 Score=24.18 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.1
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEECCc
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (247)
+|++++-+|+|..+++++++.|.++.++...
T Consensus 113 ~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~ 143 (181)
T COG1432 113 TIVLFSGDGDFIPLVEAARDKGKRVEVAGIE 143 (181)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCEEEEEecC
Confidence 4677777899999999999999999987644
No 413
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=21.22 E-value=1.4e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.8
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~ 29 (247)
|||+|-.-...+. .+.+.|++.|+++.-+
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDF 32 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHCCCEEEec
Confidence 8999988655443 5789999999998753
No 414
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.21 E-value=58 Score=29.96 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=26.6
Q ss_pred CCCCEEEECCC-chhH---HHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 36 QNVSSLIIPGG-ESTT---MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 36 ~~~d~lilpGG-~~~~---~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
.+.|.||+.|- +++. ...+. .+.+.+++..+.++|++.|=+=
T Consensus 39 ~~vD~vliAGDlFd~~~Ps~~a~~---~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNPSPRALK---LFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred ccCCEEEEccccccCCCCCHHHHH---HHHHHHHHhccCCCcEEEecCC
Confidence 35699999994 3321 12221 2456777776679999988653
No 415
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=21.08 E-value=55 Score=27.65 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHH-HHHHHH----Hc---CCcEEEEehhHHHHH
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFP-ALREFV----KM---GKPVWGTCAGLIFLA 85 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~-~i~~~~----~~---g~PilGIC~G~QlL~ 85 (247)
+.|++|+|| +++..-.+|-.-.++.+ .|.++- .. ..+.+|+|+=.|++-
T Consensus 131 ~iDliiVP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~ 188 (211)
T PLN02812 131 PLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILD 188 (211)
T ss_pred CCCEEEeCceEECCCCCcCcCCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeEC
Confidence 458999999 77643223322233333 333321 11 134899999888864
No 416
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=20.94 E-value=30 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.0
Q ss_pred EEEEehhHHHHHHh
Q 025812 74 VWGTCAGLIFLANK 87 (247)
Q Consensus 74 ilGIC~G~QlL~~~ 87 (247)
..|.|+|.|+|..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T PF09075_consen 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp S--TTTTTHHHHTT
T ss_pred ccccccchhhhhhc
Confidence 46889999998755
No 417
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=20.94 E-value=2e+02 Score=23.36 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=31.0
Q ss_pred EEEEEecCCCh-HH-HHHHHHhCCCeEEEECC-ccC----CCCCCEEEECCCc
Q 025812 2 VVGVLALQGSF-NE-HIAALKRLGVKGVEIRK-PDQ----LQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G~~-~~-~~~~L~~~G~~v~~~~~-~~~----l~~~d~lilpGG~ 47 (247)
+|.|+.. |.. .. +.++|.+.|+++.++.. .++ +.++|.||..=|.
T Consensus 46 ~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 46 KVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred EEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCC
Confidence 5777775 654 55 88999999998766543 222 5789999884443
No 418
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=20.86 E-value=5.6e+02 Score=22.55 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
+|-|+....+.. .+...|.++|..+..+.+.. .+.+-|.+|+ +. |.... ..+.++.+.+
T Consensus 44 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~---------~~~~~~~ak~ 114 (321)
T PRK11543 44 KVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKE---------LDLIIPRLED 114 (321)
T ss_pred cEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHH---------HHHHHHHHHH
Confidence 466777554443 45677788898877665432 2445577666 33 44321 2455566667
Q ss_pred cCCcEEEEeh-hHHHHHHhh
Q 025812 70 MGKPVWGTCA-GLIFLANKA 88 (247)
Q Consensus 70 ~g~PilGIC~-G~QlL~~~~ 88 (247)
+|.|+++|+. +.--|++..
T Consensus 115 ~g~~vI~iT~~~~s~la~~a 134 (321)
T PRK11543 115 KSIALLAMTGKPTSPLGLAA 134 (321)
T ss_pred cCCeEEEEECCCCChhHHhC
Confidence 8999999996 445566543
No 419
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=20.85 E-value=2.1e+02 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.4
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
+||+|+. ..|++..+.+.|++++.+ ...|-||+-|
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~----------~~~D~li~lG 52 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFD----------PWRDLLISVG 52 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCC----------cccCEEEEcC
Confidence 3677777 589999999999987543 2457777777
No 420
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.82 E-value=2.9e+02 Score=20.71 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=24.6
Q ss_pred cCCChHH----HHHHHHhCCCeEEEECCc----cCCCCCCEEEECC
Q 025812 8 LQGSFNE----HIAALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (247)
Q Consensus 8 ~~G~~~~----~~~~L~~~G~~v~~~~~~----~~l~~~d~lilpG 45 (247)
..||-.. +.+.++..|+++.+.+.. .++.++|.||+.-
T Consensus 8 ~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgs 53 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGC 53 (140)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEc
Confidence 3566553 445666778887765432 3567899999854
No 421
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.82 E-value=1.7e+02 Score=20.59 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=42.6
Q ss_pred EEEEecCCChH-HHHHHHHhCCC-eEEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 3 VGVLALQGSFN-EHIAALKRLGV-KGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 3 I~vl~~~G~~~-~~~~~L~~~G~-~v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|.|++.+-... .+.++|+..|+ ++..+.+..+ -..+|.+++--..+.. +.+ .+.+.|++.. ...|+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~-~~~----~~~~~i~~~~-~~~~i 74 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDG-DGL----ELLEQIRQIN-PSIPI 74 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSS-BHH----HHHHHHHHHT-TTSEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccc-ccc----cccccccccc-ccccE
Confidence 45566443444 56689999999 8888877653 1468999986532211 111 1234454443 57888
Q ss_pred EEEe
Q 025812 75 WGTC 78 (247)
Q Consensus 75 lGIC 78 (247)
+.++
T Consensus 75 i~~t 78 (112)
T PF00072_consen 75 IVVT 78 (112)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8888
No 422
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=20.80 E-value=2.6e+02 Score=22.26 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=28.7
Q ss_pred CCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe----hhHHHHHHhh
Q 025812 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTC----AGLIFLANKA 88 (247)
Q Consensus 37 ~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC----~G~QlL~~~~ 88 (247)
..+.++++| |+++...+ .+.+.|.+.. +.|+++.| .|.+++....
T Consensus 23 ~~~~ilit~kG~P~~~tr-----~~l~~L~~~~--~~~~~~l~D~DP~Gi~I~~~y~ 72 (160)
T cd00223 23 RNNCILITGKGYPDRATR-----RFLRRLHEEL--DLPVYILVDGDPYGISILLTYK 72 (160)
T ss_pred cCCEEEEEcCCcCCHHHH-----HHHHHHHHhh--CCCEEEEECCCcchhhhhHHHH
Confidence 346677766 88854221 2334443332 89999998 7888888764
No 423
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.70 E-value=1.2e+02 Score=26.61 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.3
Q ss_pred CEEEEEec---CCC---hHHHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLAL---QGS---FNEHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~---~G~---~~~~~~~L~~~G~~v~~~~~ 31 (247)
|||+++.+ .|. ..++.+.|.+.|.++.++..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~ 37 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITS 37 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEec
Confidence 89999987 342 44788999999999987643
No 424
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=20.70 E-value=1.5e+02 Score=25.42 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=42.8
Q ss_pred CEEEEEecC----------CC---hHHHHHHHHhCCCeEEEECCccCCCCCCEEEE-CCCchh---HHHHHHhhCCHHHH
Q 025812 1 MVVGVLALQ----------GS---FNEHIAALKRLGVKGVEIRKPDQLQNVSSLII-PGGEST---TMARLAEYHNLFPA 63 (247)
Q Consensus 1 m~I~vl~~~----------G~---~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lil-pGG~~~---~~~~l~~~~~~~~~ 63 (247)
|||+++... |. ...+.++|.+.|.++.++....+-......-. +..... ..... .......
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRA--EAEALAL 78 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHh--hHHHHHH
Confidence 999998732 21 34788999999999998765443211111111 111110 00010 0112345
Q ss_pred HHHHHHcCCcEEEEehhHHH
Q 025812 64 LREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 64 i~~~~~~g~PilGIC~G~Ql 83 (247)
+++.+.+..|-+-.|.+...
T Consensus 79 ~~~~~~~~~~Divh~~~~~~ 98 (335)
T cd03802 79 AERALAAGDFDIVHNHSLHL 98 (335)
T ss_pred HHHHHhcCCCCEEEecCccc
Confidence 66666666677777765444
No 425
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=20.57 E-value=1.2e+02 Score=23.04 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 3 VGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
|.+++-+++|..+++.|++.|.++.++.
T Consensus 99 ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 99 IVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp EEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 5666677889999999999999888764
No 426
>PRK13337 putative lipid kinase; Reviewed
Probab=20.54 E-value=4.3e+02 Score=23.28 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=30.6
Q ss_pred EEEEEecC--CC------hHHHHHHHHhCCCeEEEECC--ccC-------C--CCCCEEEECCCchh
Q 025812 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PDQ-------L--QNVSSLIIPGGEST 49 (247)
Q Consensus 2 ~I~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~~-------l--~~~d~lilpGG~~~ 49 (247)
|+.|+.++ |+ ...+.+.|++.|.++.++.. ..+ + +.+|.||+-||..+
T Consensus 3 r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 69 (304)
T PRK13337 3 RARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGT 69 (304)
T ss_pred eEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCH
Confidence 68777763 43 22567789999988765432 211 1 35788988887544
No 427
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=20.53 E-value=1.4e+02 Score=25.07 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=37.8
Q ss_pred CEEEEEec-CCChHHHHHHHHhCCCeEEEECCc----cCCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKP----DQLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~----~~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|||+|+.- +-.+..+++.+...- ....... -.+...+.+++ +| |...+.-.+ ..++.++--+-.-
T Consensus 1 ~~i~ii~A~~~E~~~l~~~~~~~~--~~~~~~~~~~~g~~~g~~v~v~~tG~G~~~aa~~~------~~li~~~~~~~ii 72 (230)
T PRK05584 1 MKIGIIGAMEEEVTLLLDKLENAQ--TITLAGREFYTGTLHGHEVVLVLSGIGKVAAALTA------TILIEHFKVDAVI 72 (230)
T ss_pred CeEEEEccCHHHHHHHHHHhhccc--eEecCCcEEEEEEECCEEEEEEECCcCHHHHHHHH------HHHHHhcCCCEEE
Confidence 89999884 334555555555321 1111111 13455566666 66 544321111 2334443334567
Q ss_pred EEEEehhHH
Q 025812 74 VWGTCAGLI 82 (247)
Q Consensus 74 ilGIC~G~Q 82 (247)
..|+|.++.
T Consensus 73 ~~G~aG~l~ 81 (230)
T PRK05584 73 NTGVAGGLA 81 (230)
T ss_pred EEEecCCCC
Confidence 889999973
No 428
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=20.50 E-value=2e+02 Score=23.78 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=25.2
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
+||+|++ ..|++..+.+.++..+.. .+.|.+++.|
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~----------~~~d~~~~~G 36 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFD----------PARDRLISVG 36 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCC----------CCCCEEEEeC
Confidence 5788877 589999998888876432 2356677666
No 429
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=20.29 E-value=2.5e+02 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=32.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCc------cCCCCCCEEEECCC
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~------~~l~~~d~lilpGG 46 (247)
|||++......-.+ ..+.++..++++...+.+ +.+.++|++++.+.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 54 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLKDYDGVTTMQF 54 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCCHHHHHHhCCCCEEEEecC
Confidence 79999998776554 557888888877765432 13568999888653
No 430
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=20.21 E-value=1.8e+02 Score=23.28 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=23.4
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=+-.+-+. .+.++|++.|++++-+.+
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~ 34 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTE 34 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8998877555433 688999999999876543
No 431
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=20.12 E-value=1.8e+02 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.5
Q ss_pred CEEEEEecCC----ChHHHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G----~~~~~~~~L~~~G~~v~~~~~ 31 (247)
|+|.|-.-+| .+..+.++|+..| +|.++.+
T Consensus 6 M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP 39 (257)
T PRK13932 6 PHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAP 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcC
Confidence 7887776666 3568889999887 8877654
No 432
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=20.09 E-value=3e+02 Score=25.75 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc-----CCCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----QLQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-----~l~~~d~lil 43 (247)
||+|+. .|... .++++++++|++++.+.+.. .+..+|-.+.
T Consensus 4 kili~g-~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~ 50 (449)
T TIGR00514 4 KILIAN-RGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVC 50 (449)
T ss_pred eEEEeC-CCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEE
Confidence 788885 67766 68899999999999875432 1345676544
No 433
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=20.06 E-value=1.2e+02 Score=27.49 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=25.7
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEehhH
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTCAGL 81 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC~G~ 81 (247)
+.++|.||+ ||+ +.+.++.|. ..-|+++++ ..-|..-||--+
T Consensus 173 I~~AD~Iv~gPGSlyTSI~P~Ll-----v~gI~eAi~~s~a~kV~v~N~~ 217 (308)
T cd07187 173 IEEADLIVYGPGSLYTSILPNLL-----VKGIAEAIRASKAPKVYICNLM 217 (308)
T ss_pred HHhCCEEEECCCccHHHhhhhcC-----chhHHHHHHhCCCCEEEEecCC
Confidence 568899999 666 344455442 333444444 457888888643
No 434
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=20.05 E-value=5.8e+02 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=17.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhC--CCeEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL--GVKGV 27 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~--G~~v~ 27 (247)
|||+|+.. |+.. .+.+.|.+. ++++.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv 30 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELY 30 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEE
Confidence 69999996 7776 466777665 35544
Done!