Query 025812
Match_columns 247
No_of_seqs 191 out of 1956
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gud_A Imidazole glycerol phos 100.0 3.3E-35 1.1E-39 248.1 10.1 190 2-209 4-206 (211)
2 2iss_D Glutamine amidotransfer 100.0 2.7E-31 9.3E-36 224.2 18.0 187 1-207 21-207 (208)
3 2nv0_A Glutamine amidotransfer 100.0 8.8E-31 3E-35 218.7 19.8 192 1-213 2-193 (196)
4 2ywj_A Glutamine amidotransfer 100.0 5.2E-30 1.8E-34 212.4 18.8 182 1-208 1-184 (186)
5 2abw_A PDX2 protein, glutamina 100.0 1.4E-30 4.8E-35 222.4 15.2 202 1-210 4-216 (227)
6 2ywd_A Glutamine amidotransfer 100.0 5.8E-30 2E-34 212.5 17.8 183 1-208 3-190 (191)
7 1q7r_A Predicted amidotransfer 100.0 1.1E-29 3.8E-34 216.1 17.5 190 1-211 24-213 (219)
8 1ka9_H Imidazole glycerol phos 100.0 7.5E-30 2.6E-34 213.9 12.1 184 1-207 3-200 (200)
9 1gpw_B Amidotransferase HISH; 100.0 4.8E-29 1.7E-33 208.9 13.3 185 1-210 1-200 (201)
10 1jvn_A Glutamine, bifunctional 99.9 9E-28 3.1E-32 229.7 13.8 188 1-207 5-215 (555)
11 3d54_D Phosphoribosylformylgly 99.9 1.5E-26 5E-31 194.9 13.3 180 1-208 3-212 (213)
12 2a9v_A GMP synthase; structura 99.9 1.2E-25 3.9E-30 190.5 9.6 173 1-212 14-204 (212)
13 1wl8_A GMP synthase [glutamine 99.9 1.6E-25 5.5E-30 185.9 10.0 168 1-208 1-187 (189)
14 1qdl_B Protein (anthranilate s 99.9 1E-24 3.5E-29 182.1 12.2 169 1-205 1-193 (195)
15 3l7n_A Putative uncharacterize 99.9 2.3E-24 7.7E-29 185.3 9.6 176 1-210 1-197 (236)
16 1i1q_B Anthranilate synthase c 99.9 1E-22 3.5E-27 169.5 17.6 169 1-208 1-190 (192)
17 2vpi_A GMP synthase; guanine m 99.9 2.8E-24 9.5E-29 182.9 5.7 168 2-208 26-211 (218)
18 3m3p_A Glutamine amido transfe 99.9 9.9E-24 3.4E-28 183.0 8.1 170 1-208 4-192 (250)
19 1o1y_A Conserved hypothetical 99.9 1.4E-23 4.8E-28 180.8 8.8 170 1-210 13-203 (239)
20 3fij_A LIN1909 protein; 11172J 99.9 6.3E-23 2.1E-27 178.2 11.8 176 14-211 32-244 (254)
21 3tqi_A GMP synthase [glutamine 99.9 1.6E-23 5.3E-28 199.3 7.9 167 2-206 12-203 (527)
22 1a9x_B Carbamoyl phosphate syn 99.9 4.7E-22 1.6E-26 181.5 13.8 164 1-210 191-376 (379)
23 3uow_A GMP synthetase; structu 99.9 1.8E-22 6.1E-27 193.0 11.2 195 1-205 8-227 (556)
24 3r75_A Anthranilate/para-amino 99.9 4.9E-22 1.7E-26 192.5 11.3 176 1-212 447-638 (645)
25 2ywb_A GMP synthase [glutamine 99.9 2.1E-22 7.1E-27 190.6 8.3 166 2-208 1-185 (503)
26 1gpm_A GMP synthetase, XMP ami 99.9 9.8E-23 3.3E-27 193.7 5.7 165 1-205 8-199 (525)
27 2w7t_A CTP synthetase, putativ 99.8 7.2E-22 2.5E-26 173.3 6.9 196 2-219 10-266 (273)
28 1l9x_A Gamma-glutamyl hydrolas 99.8 6.9E-20 2.3E-24 163.8 12.0 86 2-89 32-142 (315)
29 2vxo_A GMP synthase [glutamine 99.8 3.2E-19 1.1E-23 174.1 9.2 164 2-204 31-211 (697)
30 2v4u_A CTP synthase 2; pyrimid 99.8 1.3E-19 4.3E-24 160.3 3.9 85 1-90 26-138 (289)
31 1vco_A CTP synthetase; tetrame 99.7 9.5E-18 3.3E-22 159.2 7.8 77 9-90 313-403 (550)
32 3nva_A CTP synthase; rossman f 99.6 7.3E-16 2.5E-20 144.6 7.0 84 2-90 295-398 (535)
33 2vdj_A Homoserine O-succinyltr 99.6 1.1E-14 3.6E-19 129.2 11.3 162 1-196 36-241 (301)
34 2h2w_A Homoserine O-succinyltr 99.6 1.7E-14 5.7E-19 128.3 12.2 171 1-207 48-262 (312)
35 1s1m_A CTP synthase; CTP synth 99.6 3.1E-15 1.1E-19 141.9 7.7 77 9-90 302-391 (545)
36 1fy2_A Aspartyl dipeptidase; s 99.5 3.2E-14 1.1E-18 121.5 6.5 107 2-109 33-157 (229)
37 3ugj_A Phosphoribosylformylgly 99.4 9.1E-13 3.1E-17 135.5 12.6 86 1-87 1048-1152(1303)
38 3l4e_A Uncharacterized peptida 99.3 1.2E-12 4E-17 110.2 6.4 107 2-109 29-161 (206)
39 1oi4_A Hypothetical protein YH 99.0 4.9E-10 1.7E-14 92.7 8.6 85 1-87 24-134 (193)
40 3l18_A Intracellular protease 99.0 1.4E-09 4.7E-14 87.6 8.4 85 1-87 3-111 (168)
41 2rk3_A Protein DJ-1; parkinson 98.8 1.4E-08 4.8E-13 83.9 8.6 85 2-87 5-115 (197)
42 2ab0_A YAJL; DJ-1/THIJ superfa 98.8 2.1E-08 7.2E-13 83.5 9.0 85 2-87 4-116 (205)
43 4e08_A DJ-1 beta; flavodoxin-l 98.8 3.4E-08 1.1E-12 81.2 10.1 85 2-87 7-116 (190)
44 2vrn_A Protease I, DR1199; cys 98.8 1.6E-08 5.6E-13 82.8 7.9 86 1-87 10-124 (190)
45 2fex_A Conserved hypothetical 98.7 4.8E-08 1.6E-12 80.1 9.8 83 2-87 3-110 (188)
46 4hcj_A THIJ/PFPI domain protei 98.7 1E-08 3.6E-13 83.9 5.4 83 3-87 11-117 (177)
47 3er6_A Putative transcriptiona 98.7 3.6E-08 1.2E-12 82.5 6.9 86 2-87 10-124 (209)
48 3efe_A THIJ/PFPI family protei 98.6 1E-07 3.5E-12 79.9 7.5 83 2-87 7-121 (212)
49 3ot1_A 4-methyl-5(B-hydroxyeth 98.6 1E-07 3.5E-12 79.6 7.4 85 2-87 11-121 (208)
50 3mgk_A Intracellular protease/ 98.6 7E-08 2.4E-12 80.9 6.2 85 1-87 5-113 (211)
51 3noq_A THIJ/PFPI family protei 98.5 1.3E-07 4.6E-12 80.3 7.2 84 2-87 7-113 (231)
52 3f5d_A Protein YDEA; unknow pr 98.5 1.9E-07 6.4E-12 78.1 7.2 82 2-87 5-109 (206)
53 3cne_A Putative protease I; st 98.5 1.1E-07 3.7E-12 76.9 5.3 87 1-87 3-120 (175)
54 3uk7_A Class I glutamine amido 98.5 3.5E-07 1.2E-11 83.3 8.7 84 2-87 14-137 (396)
55 3uk7_A Class I glutamine amido 98.5 3.5E-07 1.2E-11 83.4 8.5 84 2-87 207-330 (396)
56 3l3b_A ES1 family protein; ssg 98.5 4E-07 1.4E-11 78.1 8.0 85 2-87 25-167 (242)
57 3ewn_A THIJ/PFPI family protei 98.4 6.4E-07 2.2E-11 77.3 8.1 86 1-87 24-133 (253)
58 3gra_A Transcriptional regulat 98.4 3.9E-07 1.3E-11 75.8 5.9 82 2-87 7-117 (202)
59 4gdh_A DJ-1, uncharacterized p 98.3 1.1E-06 3.9E-11 72.5 8.0 85 1-86 5-122 (194)
60 1u9c_A APC35852; structural ge 98.3 6.6E-07 2.3E-11 75.1 6.4 85 2-87 7-138 (224)
61 3fse_A Two-domain protein cont 98.3 1.3E-06 4.5E-11 79.1 8.5 84 2-87 12-121 (365)
62 1vhq_A Enhancing lycopene bios 98.3 9.5E-07 3.3E-11 74.9 6.6 87 2-88 8-150 (232)
63 3ej6_A Catalase-3; heme, hydro 98.3 7.8E-07 2.7E-11 86.0 6.6 87 2-88 539-647 (688)
64 3ttv_A Catalase HPII; heme ori 98.2 5.8E-07 2E-11 87.5 4.6 85 1-88 601-709 (753)
65 1sy7_A Catalase 1; heme oxidat 98.2 5.4E-06 1.8E-10 81.0 9.3 86 1-87 535-644 (715)
66 3n7t_A Macrophage binding prot 98.2 2.9E-06 1E-10 72.8 6.6 51 36-87 104-154 (247)
67 1rw7_A YDR533CP; alpha-beta sa 98.1 3.2E-06 1.1E-10 72.1 4.8 75 12-87 31-147 (243)
68 2iuf_A Catalase; oxidoreductas 98.0 4E-06 1.4E-10 81.2 5.4 87 1-87 530-648 (688)
69 3kkl_A Probable chaperone prot 98.0 7E-06 2.4E-10 70.3 6.3 51 36-87 97-147 (244)
70 3bhn_A THIJ/PFPI domain protei 97.9 4.8E-06 1.6E-10 71.0 3.8 82 2-87 22-128 (236)
71 1n57_A Chaperone HSP31, protei 97.7 2.6E-05 8.8E-10 68.4 4.9 51 36-87 144-194 (291)
72 3en0_A Cyanophycinase; serine 97.7 3.5E-05 1.2E-09 67.7 5.2 107 2-109 58-194 (291)
73 2gk3_A Putative cytoplasmic pr 95.9 0.015 5E-07 49.7 6.7 72 7-78 37-125 (256)
74 1z0s_A Probable inorganic poly 94.4 0.054 1.8E-06 47.0 5.6 69 1-80 30-100 (278)
75 4e5v_A Putative THUA-like prot 91.9 0.79 2.7E-05 39.5 9.1 61 14-81 24-96 (281)
76 2i2c_A Probable inorganic poly 90.8 0.37 1.3E-05 41.2 5.9 64 1-81 1-71 (272)
77 3rht_A (gatase1)-like protein; 87.4 1.1 3.6E-05 38.3 6.1 72 2-78 6-86 (259)
78 1u0t_A Inorganic polyphosphate 86.6 1.9 6.4E-05 37.4 7.5 69 2-80 6-108 (307)
79 2an1_A Putative kinase; struct 85.1 0.75 2.6E-05 39.4 4.1 69 2-80 7-96 (292)
80 2zuv_A Lacto-N-biose phosphory 83.7 1.2 4.3E-05 42.9 5.2 63 15-79 473-544 (759)
81 3tty_A Beta-GAL, beta-galactos 83.1 3.1 0.00011 40.2 7.9 59 13-78 428-486 (675)
82 1t0b_A THUA-like protein; treh 82.1 2.2 7.4E-05 36.1 5.7 60 16-80 38-106 (252)
83 2pjk_A 178AA long hypothetical 78.9 6.7 0.00023 31.2 7.3 47 1-47 16-91 (178)
84 3iwt_A 178AA long hypothetical 77.9 4.6 0.00016 31.8 6.1 47 1-47 16-91 (178)
85 1eiw_A Hypothetical protein MT 77.6 4.8 0.00016 29.7 5.6 57 12-78 17-74 (111)
86 3kbq_A Protein TA0487; structu 76.4 1.4 4.9E-05 35.2 2.6 47 1-47 4-72 (172)
87 1y5e_A Molybdenum cofactor bio 73.8 4 0.00014 32.1 4.6 47 1-47 14-82 (169)
88 3eag_A UDP-N-acetylmuramate:L- 71.4 16 0.00053 31.6 8.3 30 1-30 5-35 (326)
89 2raf_A Putative dinucleotide-b 71.4 22 0.00075 28.4 8.8 72 1-81 20-93 (209)
90 4hv4_A UDP-N-acetylmuramate--L 70.8 16 0.00053 33.7 8.6 77 2-80 24-130 (494)
91 1f4p_A Flavodoxin; electron tr 70.6 7.8 0.00027 28.9 5.5 44 1-44 1-55 (147)
92 3hly_A Flavodoxin-like domain; 70.3 6.9 0.00024 30.1 5.2 45 1-45 1-59 (161)
93 2pln_A HP1043, response regula 70.2 16 0.00056 26.0 7.1 77 1-88 19-105 (137)
94 3ff4_A Uncharacterized protein 68.5 25 0.00085 26.0 7.8 82 2-83 6-117 (122)
95 1mkz_A Molybdenum cofactor bio 68.2 5 0.00017 31.7 4.0 47 1-47 11-79 (172)
96 2x0j_A Malate dehydrogenase; o 67.9 16 0.00055 31.4 7.5 46 1-47 1-79 (294)
97 3pzy_A MOG; ssgcid, seattle st 67.7 3.7 0.00013 32.3 3.1 47 1-47 8-76 (164)
98 1yt5_A Inorganic polyphosphate 66.5 2.9 9.9E-05 35.2 2.4 68 1-80 1-73 (258)
99 3f6r_A Flavodoxin; FMN binding 66.1 12 0.00041 27.8 5.7 44 1-44 2-56 (148)
100 3dfu_A Uncharacterized protein 65.5 5.2 0.00018 33.4 3.8 44 1-45 7-51 (232)
101 2dc1_A L-aspartate dehydrogena 64.7 34 0.0012 27.7 8.7 45 1-46 1-59 (236)
102 3b6i_A Flavoprotein WRBA; flav 64.3 8.8 0.0003 30.0 4.8 44 1-44 2-75 (198)
103 2is8_A Molybdopterin biosynthe 62.3 3 0.0001 32.6 1.6 47 1-47 2-72 (164)
104 3lwz_A 3-dehydroquinate dehydr 61.4 32 0.0011 26.8 7.3 47 2-48 9-85 (153)
105 2hqr_A Putative transcriptiona 61.0 21 0.00072 28.0 6.6 78 1-88 1-87 (223)
106 2ohh_A Type A flavoprotein FPR 60.9 12 0.00043 32.7 5.6 45 1-45 257-315 (404)
107 3lk7_A UDP-N-acetylmuramoylala 60.4 19 0.00065 32.5 6.9 29 2-30 11-39 (451)
108 3nep_X Malate dehydrogenase; h 59.8 26 0.00089 30.3 7.4 46 1-47 1-79 (314)
109 3l49_A ABC sugar (ribose) tran 58.8 49 0.0017 26.8 8.8 67 2-77 7-92 (291)
110 2a5l_A Trp repressor binding p 58.6 11 0.00039 29.4 4.5 44 1-44 6-78 (200)
111 3n8k_A 3-dehydroquinate dehydr 58.3 8.8 0.0003 30.5 3.6 48 1-48 29-106 (172)
112 3soz_A ORF 245 protein, cytopl 58.2 9.8 0.00033 32.0 4.2 65 14-78 37-118 (248)
113 3l6u_A ABC-type sugar transpor 57.6 63 0.0022 26.1 9.3 68 2-78 10-96 (293)
114 3pfn_A NAD kinase; structural 57.3 35 0.0012 30.4 7.8 69 2-80 40-141 (365)
115 1jg7_A BGT, DNA beta-glucosylt 57.2 11 0.00036 31.8 4.1 44 1-44 1-65 (351)
116 4b4o_A Epimerase family protei 56.5 13 0.00044 31.0 4.8 45 1-45 1-59 (298)
117 2qv7_A Diacylglycerol kinase D 56.0 28 0.00095 30.0 7.0 78 2-87 26-123 (337)
118 2fn9_A Ribose ABC transporter, 55.5 80 0.0027 25.5 9.6 67 2-77 4-89 (290)
119 3edo_A Flavoprotein, putative 55.3 14 0.00049 27.9 4.4 27 1-27 4-34 (151)
120 3rfq_A Pterin-4-alpha-carbinol 54.9 8 0.00027 31.1 3.0 47 1-47 31-99 (185)
121 1oju_A MDH, malate dehydrogena 54.9 37 0.0013 29.0 7.5 46 1-47 1-79 (294)
122 2pbq_A Molybdenum cofactor bio 54.2 9.3 0.00032 30.2 3.3 47 1-47 6-78 (178)
123 2r47_A Uncharacterized protein 53.4 3 0.0001 32.8 0.2 38 36-79 83-125 (157)
124 1rtt_A Conserved hypothetical 52.9 11 0.00036 29.7 3.5 30 1-30 7-43 (193)
125 3m9w_A D-xylose-binding peripl 52.0 65 0.0022 26.5 8.5 67 2-77 4-89 (313)
126 2q9u_A A-type flavoprotein; fl 51.8 25 0.00086 30.9 6.1 45 1-45 257-315 (414)
127 2g2c_A Putative molybdenum cof 51.7 5.2 0.00018 31.4 1.3 47 1-47 6-79 (167)
128 3gt7_A Sensor protein; structu 50.6 22 0.00076 26.1 4.8 81 1-88 8-100 (154)
129 3eod_A Protein HNR; response r 50.5 26 0.00089 24.5 5.0 73 1-79 8-87 (130)
130 3rot_A ABC sugar transporter, 50.1 90 0.0031 25.4 9.1 67 2-77 5-92 (297)
131 3d4o_A Dipicolinate synthase s 49.9 17 0.00059 30.7 4.5 44 1-44 6-65 (293)
132 1jlj_A Gephyrin; globular alph 49.5 11 0.00038 30.2 3.0 47 1-47 15-88 (189)
133 3g1w_A Sugar ABC transporter; 49.4 84 0.0029 25.6 8.8 67 2-77 6-92 (305)
134 3lte_A Response regulator; str 49.0 17 0.00058 25.6 3.8 43 1-43 7-56 (132)
135 3grc_A Sensor protein, kinase; 48.5 16 0.00056 26.0 3.7 74 1-81 7-90 (140)
136 3mw8_A Uroporphyrinogen-III sy 48.2 12 0.00042 30.5 3.2 45 1-45 2-58 (240)
137 3i42_A Response regulator rece 48.2 12 0.0004 26.4 2.7 42 2-43 5-53 (127)
138 3u80_A 3-dehydroquinate dehydr 48.1 26 0.0009 27.2 4.8 48 1-48 5-82 (151)
139 1jr2_A Uroporphyrinogen-III sy 47.4 20 0.00069 30.1 4.5 45 1-45 22-84 (286)
140 2zki_A 199AA long hypothetical 46.8 20 0.0007 27.9 4.2 30 1-30 5-39 (199)
141 1ydg_A Trp repressor binding p 46.7 15 0.00052 29.1 3.5 30 1-30 7-42 (211)
142 3afo_A NADH kinase POS5; alpha 46.6 8 0.00027 34.8 1.9 69 2-80 43-148 (388)
143 3f6c_A Positive transcription 46.6 16 0.00056 25.8 3.4 72 1-80 2-83 (134)
144 1uc8_A LYSX, lysine biosynthes 46.3 35 0.0012 27.7 5.8 44 2-45 1-56 (280)
145 3m6m_D Sensory/regulatory prot 45.9 15 0.00052 26.7 3.1 43 1-43 15-64 (143)
146 2qxy_A Response regulator; reg 45.5 26 0.00089 25.0 4.4 72 2-80 6-84 (142)
147 2hna_A Protein MIOC, flavodoxi 45.2 31 0.0011 25.5 4.9 45 1-45 2-54 (147)
148 4amg_A Snogd; transferase, pol 45.2 20 0.00068 30.8 4.3 32 1-32 23-59 (400)
149 2rdm_A Response regulator rece 45.1 22 0.00074 25.0 3.8 71 1-79 6-87 (132)
150 1qkk_A DCTD, C4-dicarboxylate 44.6 34 0.0012 24.9 5.0 71 1-79 4-83 (155)
151 4eg0_A D-alanine--D-alanine li 44.6 40 0.0014 28.4 6.1 42 1-43 14-71 (317)
152 2bon_A Lipid kinase; DAG kinas 44.2 46 0.0016 28.6 6.5 49 2-50 31-95 (332)
153 4ici_A Putative flavoprotein; 44.0 23 0.00077 27.5 4.0 29 1-29 14-45 (171)
154 3snk_A Response regulator CHEY 43.7 23 0.0008 25.1 3.9 72 2-79 16-95 (135)
155 2pl1_A Transcriptional regulat 43.6 23 0.0008 24.3 3.8 43 1-43 1-50 (121)
156 3lua_A Response regulator rece 43.4 37 0.0013 24.1 5.0 73 2-79 6-89 (140)
157 3ksm_A ABC-type sugar transpor 43.1 1.2E+02 0.0042 24.0 9.6 67 2-77 2-90 (276)
158 2j48_A Two-component sensor ki 42.8 19 0.00066 24.3 3.1 44 1-44 2-52 (119)
159 3uug_A Multiple sugar-binding 42.5 1.1E+02 0.0039 25.1 8.6 67 2-77 5-90 (330)
160 2rjn_A Response regulator rece 42.4 36 0.0012 24.7 4.8 72 1-80 8-88 (154)
161 3cg4_A Response regulator rece 42.0 21 0.00071 25.5 3.4 43 1-43 8-57 (142)
162 2gkg_A Response regulator homo 41.7 16 0.00056 25.2 2.7 42 2-43 7-55 (127)
163 3cs3_A Sugar-binding transcrip 41.3 1.3E+02 0.0044 24.1 8.6 45 2-46 10-66 (277)
164 3hv2_A Response regulator/HD d 40.8 20 0.00067 26.2 3.1 70 2-79 16-94 (153)
165 2ark_A Flavodoxin; FMN, struct 40.3 14 0.00048 28.9 2.3 45 1-45 5-60 (188)
166 3vku_A L-LDH, L-lactate dehydr 40.0 81 0.0028 27.3 7.3 46 1-47 10-86 (326)
167 1iow_A DD-ligase, DDLB, D-ALA\ 40.0 43 0.0015 27.6 5.5 42 1-43 3-60 (306)
168 3dfz_A SIRC, precorrin-2 dehyd 40.0 61 0.0021 26.5 6.2 29 2-31 33-62 (223)
169 2rir_A Dipicolinate synthase, 39.9 31 0.0011 29.2 4.5 43 1-43 8-66 (300)
170 3s40_A Diacylglycerol kinase; 39.8 77 0.0026 26.8 7.1 77 2-88 10-107 (304)
171 1uz5_A MOEA protein, 402AA lon 39.6 18 0.00063 32.5 3.2 35 14-48 211-257 (402)
172 3o9z_A Lipopolysaccaride biosy 39.5 1.7E+02 0.0058 24.6 9.6 29 1-29 4-33 (312)
173 3hzh_A Chemotaxis response reg 39.2 19 0.00065 26.6 2.8 71 1-79 37-119 (157)
174 3h5i_A Response regulator/sens 39.2 47 0.0016 23.6 5.0 43 1-43 6-56 (140)
175 3o74_A Fructose transport syst 39.0 1.1E+02 0.0037 24.3 7.7 46 2-47 4-68 (272)
176 2qr3_A Two-component system re 38.8 16 0.00054 26.0 2.2 74 1-79 4-88 (140)
177 1ag9_A Flavodoxin; electron tr 38.5 9.8 0.00034 29.5 1.1 45 1-45 1-53 (175)
178 1k68_A Phytochrome response re 38.4 28 0.00097 24.4 3.6 73 1-80 3-94 (140)
179 2zay_A Response regulator rece 38.2 14 0.0005 26.6 1.9 43 2-44 10-59 (147)
180 1gsa_A Glutathione synthetase; 38.1 32 0.0011 28.5 4.3 30 1-30 2-39 (316)
181 3h75_A Periplasmic sugar-bindi 38.1 85 0.0029 26.4 7.2 67 2-78 5-93 (350)
182 2b4a_A BH3024; flavodoxin-like 37.6 28 0.00095 24.7 3.4 43 1-43 16-66 (138)
183 3kto_A Response regulator rece 37.5 27 0.00093 24.8 3.4 73 2-79 8-88 (136)
184 1kwg_A Beta-galactosidase; TIM 37.4 38 0.0013 32.1 5.1 34 13-46 428-461 (645)
185 4es6_A Uroporphyrinogen-III sy 37.3 22 0.00074 29.2 3.0 45 1-45 7-66 (254)
186 3hwr_A 2-dehydropantoate 2-red 37.0 61 0.0021 27.5 6.1 75 1-83 20-125 (318)
187 3hdg_A Uncharacterized protein 37.0 17 0.00058 25.9 2.1 71 1-79 8-87 (137)
188 3rqz_A Metallophosphoesterase; 37.0 33 0.0011 27.9 4.2 32 1-45 4-36 (246)
189 2r85_A PURP protein PF1517; AT 36.9 40 0.0014 28.3 4.8 31 1-32 3-33 (334)
190 1g8l_A Molybdopterin biosynthe 36.7 26 0.00087 31.6 3.6 34 14-47 208-253 (411)
191 3r5x_A D-alanine--D-alanine li 36.7 21 0.0007 29.9 2.9 42 1-43 4-61 (307)
192 3nbm_A PTS system, lactose-spe 36.3 1.1E+02 0.0039 21.8 6.6 69 1-79 7-86 (108)
193 2vzf_A NADH-dependent FMN redu 36.2 18 0.00061 28.5 2.3 30 1-30 3-41 (197)
194 2x7x_A Sensor protein; transfe 36.2 1.8E+02 0.0062 23.9 9.2 67 2-77 8-93 (325)
195 1di6_A MOGA, molybdenum cofact 36.1 19 0.00066 29.0 2.5 47 1-47 4-76 (195)
196 3hn7_A UDP-N-acetylmuramate-L- 36.1 74 0.0025 29.3 6.8 80 1-80 20-130 (524)
197 8abp_A L-arabinose-binding pro 36.0 1.6E+02 0.0055 23.8 8.4 67 2-77 4-88 (306)
198 1lss_A TRK system potassium up 35.6 38 0.0013 24.2 3.9 29 1-30 5-34 (140)
199 3jte_A Response regulator rece 35.6 46 0.0016 23.6 4.4 70 2-79 5-85 (143)
200 2jba_A Phosphate regulon trans 35.4 61 0.0021 22.2 5.0 42 2-43 4-52 (127)
201 3oti_A CALG3; calicheamicin, T 35.4 38 0.0013 29.2 4.6 44 1-45 21-74 (398)
202 2dfj_A Diadenosinetetraphospha 34.7 46 0.0016 28.1 4.8 35 1-45 1-36 (280)
203 1oi7_A Succinyl-COA synthetase 34.6 1.4E+02 0.0048 25.1 7.9 72 2-83 146-238 (288)
204 2f00_A UDP-N-acetylmuramate--L 34.5 1.5E+02 0.0051 26.8 8.5 79 1-80 20-127 (491)
205 2lpm_A Two-component response 33.8 12 0.00042 27.6 0.9 43 1-43 9-59 (123)
206 3gv0_A Transcriptional regulat 33.7 1.5E+02 0.0051 23.9 7.8 45 2-46 10-75 (288)
207 3gl9_A Response regulator; bet 33.7 61 0.0021 22.4 4.7 42 2-43 4-52 (122)
208 3tb6_A Arabinose metabolism tr 33.6 1.8E+02 0.0062 23.2 9.3 71 2-78 17-106 (298)
209 3cnb_A DNA-binding response re 33.6 37 0.0013 24.0 3.5 44 1-44 9-61 (143)
210 3pqe_A L-LDH, L-lactate dehydr 33.4 1.1E+02 0.0038 26.4 7.2 46 1-47 6-83 (326)
211 3re1_A Uroporphyrinogen-III sy 33.3 26 0.00089 29.1 3.0 45 1-45 15-74 (269)
212 3mwd_B ATP-citrate synthase; A 33.3 66 0.0023 28.1 5.7 72 2-82 170-262 (334)
213 3tri_A Pyrroline-5-carboxylate 33.2 1.1E+02 0.0039 25.3 7.1 74 1-82 4-102 (280)
214 3oa2_A WBPB; oxidoreductase, s 33.0 2.2E+02 0.0075 24.0 9.4 29 1-29 4-33 (318)
215 3cg0_A Response regulator rece 32.8 24 0.00082 25.0 2.4 70 1-79 10-90 (140)
216 2pv7_A T-protein [includes: ch 32.6 45 0.0015 28.1 4.4 44 2-45 23-73 (298)
217 3c3d_A 2-phospho-L-lactate tra 32.4 18 0.00061 31.5 1.8 39 35-79 181-221 (311)
218 3a10_A Response regulator; pho 32.3 46 0.0016 22.6 3.8 42 2-43 3-51 (116)
219 2fz5_A Flavodoxin; alpha/beta 32.0 44 0.0015 24.0 3.7 43 3-45 2-54 (137)
220 2yq5_A D-isomer specific 2-hyd 31.8 75 0.0026 27.8 5.8 45 1-45 2-53 (343)
221 1uuy_A CNX1, molybdopterin bio 31.7 42 0.0014 25.9 3.8 47 1-47 6-81 (167)
222 3ldh_A Lactate dehydrogenase; 31.7 82 0.0028 27.4 6.0 46 1-47 22-99 (330)
223 4eys_A MCCC family protein; MC 31.5 1.2E+02 0.004 26.5 7.0 29 2-30 7-45 (346)
224 3kht_A Response regulator; PSI 31.4 56 0.0019 23.2 4.3 82 2-88 7-100 (144)
225 3k4h_A Putative transcriptiona 31.4 2E+02 0.0068 23.0 9.0 34 14-47 34-79 (292)
226 2vk2_A YTFQ, ABC transporter p 31.3 1.9E+02 0.0066 23.4 8.2 45 2-46 4-67 (306)
227 3t6k_A Response regulator rece 31.0 47 0.0016 23.6 3.8 42 2-43 6-54 (136)
228 2fvy_A D-galactose-binding per 31.0 2.1E+02 0.0071 23.0 9.4 68 2-78 4-91 (309)
229 3tsa_A SPNG, NDP-rhamnosyltran 31.0 55 0.0019 27.9 4.8 32 1-32 2-38 (391)
230 2vyc_A Biodegradative arginine 30.8 77 0.0026 30.7 6.2 77 1-82 1-96 (755)
231 3crn_A Response regulator rece 30.7 49 0.0017 23.3 3.8 42 2-43 5-53 (132)
232 2kyr_A Fructose-like phosphotr 30.6 43 0.0015 24.6 3.3 33 14-46 27-69 (111)
233 1qo0_D AMIR; binding protein, 30.6 99 0.0034 23.4 5.8 81 1-88 13-98 (196)
234 3ilh_A Two component response 30.5 38 0.0013 24.0 3.2 42 2-43 11-66 (146)
235 1ys7_A Transcriptional regulat 30.5 43 0.0015 26.2 3.8 43 1-43 8-57 (233)
236 1p3d_A UDP-N-acetylmuramate--a 30.3 1.5E+02 0.0051 26.7 7.8 78 1-79 19-125 (475)
237 4e7p_A Response regulator; DNA 30.0 49 0.0017 23.8 3.8 71 1-79 21-102 (150)
238 4fzr_A SSFS6; structural genom 30.0 53 0.0018 28.2 4.6 45 1-45 16-70 (398)
239 1kgs_A DRRD, DNA binding respo 30.0 44 0.0015 26.0 3.7 71 1-79 3-82 (225)
240 3dmy_A Protein FDRA; predicted 29.9 1.9E+02 0.0067 26.4 8.5 72 2-81 114-208 (480)
241 1g5b_A Serine/threonine protei 29.8 58 0.002 25.8 4.4 36 1-46 13-49 (221)
242 3dzv_A 4-methyl-5-(beta-hydrox 29.8 1.6E+02 0.0056 24.7 7.4 58 12-75 29-92 (273)
243 2dri_A D-ribose-binding protei 29.7 2.1E+02 0.0072 22.7 9.0 46 1-46 2-66 (271)
244 3bio_A Oxidoreductase, GFO/IDH 29.6 1.6E+02 0.0055 24.7 7.5 45 1-46 10-74 (304)
245 1obo_A Flavodoxin; electron tr 29.6 40 0.0014 25.4 3.3 44 1-44 2-53 (169)
246 1wu2_A MOEA protein, molybdopt 29.6 29 0.00098 31.2 2.7 35 14-48 215-261 (396)
247 3hdv_A Response regulator; PSI 29.5 43 0.0015 23.5 3.3 42 2-43 9-58 (136)
248 3f6p_A Transcriptional regulat 29.4 69 0.0024 22.0 4.4 42 2-43 4-52 (120)
249 2xhz_A KDSD, YRBH, arabinose 5 29.4 1.5E+02 0.0053 22.3 6.8 77 2-87 51-140 (183)
250 1jeo_A MJ1247, hypothetical pr 29.3 1.4E+02 0.0048 22.5 6.5 68 3-79 43-117 (180)
251 3rqi_A Response regulator prot 29.1 77 0.0026 23.9 4.9 42 2-43 9-57 (184)
252 4ffl_A PYLC; amino acid, biosy 28.8 1.6E+02 0.0056 24.9 7.5 29 1-30 2-31 (363)
253 3c3m_A Response regulator rece 28.6 55 0.0019 23.2 3.8 42 2-43 5-53 (138)
254 1wcw_A Uroporphyrinogen III sy 28.5 95 0.0033 25.2 5.7 44 1-45 9-67 (261)
255 3gvi_A Malate dehydrogenase; N 28.5 1.1E+02 0.0037 26.4 6.2 46 1-47 8-85 (324)
256 3kke_A LACI family transcripti 28.5 2.3E+02 0.0079 22.9 8.2 45 2-46 17-80 (303)
257 3jy6_A Transcriptional regulat 28.5 2.2E+02 0.0076 22.6 8.3 45 2-46 9-72 (276)
258 3o1i_D Periplasmic protein TOR 28.2 1.7E+02 0.0057 23.6 7.2 66 2-77 7-93 (304)
259 2fp4_A Succinyl-COA ligase [GD 27.9 1.3E+02 0.0043 25.7 6.5 73 2-81 154-248 (305)
260 1rli_A Trp repressor binding p 27.9 30 0.001 26.4 2.3 21 1-21 4-28 (184)
261 3ew7_A LMO0794 protein; Q8Y8U8 27.6 58 0.002 25.1 4.0 29 1-29 1-30 (221)
262 3r0j_A Possible two component 27.3 41 0.0014 27.0 3.1 80 1-88 24-114 (250)
263 1tzb_A Glucose-6-phosphate iso 27.3 2.6E+02 0.0089 23.3 8.4 76 2-87 39-121 (302)
264 3sho_A Transcriptional regulat 27.2 2E+02 0.0069 21.7 8.4 69 2-79 41-122 (187)
265 2qzj_A Two-component response 27.2 57 0.002 23.1 3.7 43 1-43 5-54 (136)
266 1m3s_A Hypothetical protein YC 27.2 1.9E+02 0.0065 21.8 7.0 65 14-87 54-123 (186)
267 1uf3_A Hypothetical protein TT 27.1 1.3E+02 0.0044 23.2 6.0 35 1-46 6-41 (228)
268 2fep_A Catabolite control prot 26.9 2.5E+02 0.0084 22.6 9.1 45 2-46 18-81 (289)
269 1j6u_A UDP-N-acetylmuramate-al 26.9 1E+02 0.0035 27.8 6.0 46 34-79 68-121 (469)
270 3jtm_A Formate dehydrogenase, 26.8 1.1E+02 0.0037 26.7 6.0 45 1-45 3-70 (351)
271 1czn_A Flavodoxin; FMN binding 26.7 52 0.0018 24.7 3.5 45 1-45 1-54 (169)
272 3p7m_A Malate dehydrogenase; p 26.6 1.6E+02 0.0056 25.2 7.0 46 1-47 6-83 (321)
273 2rjo_A Twin-arginine transloca 26.5 2E+02 0.0069 23.7 7.6 68 2-78 7-95 (332)
274 3nhm_A Response regulator; pro 26.4 59 0.002 22.6 3.5 43 1-44 5-54 (133)
275 3l4b_C TRKA K+ channel protien 26.1 37 0.0013 26.9 2.6 29 1-30 1-30 (218)
276 2qip_A Protein of unknown func 26.0 60 0.0021 24.8 3.7 29 3-31 112-141 (165)
277 2vvr_A Ribose-5-phosphate isom 25.9 68 0.0023 24.7 3.9 30 1-30 2-34 (149)
278 3euw_A MYO-inositol dehydrogen 25.9 1.9E+02 0.0064 24.4 7.3 26 2-28 6-33 (344)
279 3rst_A Signal peptide peptidas 25.8 78 0.0027 25.9 4.6 16 61-76 68-84 (240)
280 3ck2_A Conserved uncharacteriz 25.7 79 0.0027 24.0 4.4 22 1-22 7-29 (176)
281 2vvp_A Ribose-5-phosphate isom 25.7 76 0.0026 24.8 4.2 31 1-31 4-37 (162)
282 1zh2_A KDP operon transcriptio 25.6 49 0.0017 22.4 2.9 43 1-43 2-51 (121)
283 3hcw_A Maltose operon transcri 25.5 2.4E+02 0.0082 22.7 7.7 33 14-46 33-77 (295)
284 2gwr_A DNA-binding response re 25.5 68 0.0023 25.4 4.1 42 2-43 7-55 (238)
285 3h2s_A Putative NADH-flavin re 25.5 67 0.0023 24.9 4.0 29 1-29 1-30 (224)
286 3bbl_A Regulatory protein of L 25.3 2.6E+02 0.0089 22.3 8.9 33 14-46 29-73 (287)
287 2p0y_A Hypothetical protein LP 25.3 32 0.0011 30.3 2.2 40 35-79 186-228 (341)
288 2q7x_A UPF0052 protein SP_1565 25.1 35 0.0012 29.9 2.3 40 35-79 182-224 (326)
289 3ius_A Uncharacterized conserv 25.1 1.1E+02 0.0036 24.8 5.4 46 1-47 6-73 (286)
290 1zgz_A Torcad operon transcrip 25.1 70 0.0024 21.7 3.7 42 2-43 4-52 (122)
291 2i0f_A 6,7-dimethyl-8-ribityll 25.0 2E+02 0.0068 22.2 6.5 74 1-75 13-114 (157)
292 3to5_A CHEY homolog; alpha(5)b 24.9 38 0.0013 25.1 2.3 43 1-43 13-63 (134)
293 2ioy_A Periplasmic sugar-bindi 24.8 2.7E+02 0.0091 22.2 9.1 45 2-46 3-66 (283)
294 4ew6_A D-galactose-1-dehydroge 24.8 1.7E+02 0.0059 24.7 6.9 45 1-46 26-90 (330)
295 3l8h_A Putative haloacid dehal 24.6 42 0.0014 25.2 2.5 32 1-32 1-52 (179)
296 1ykg_A SIR-FP, sulfite reducta 24.6 44 0.0015 25.5 2.6 45 1-45 10-64 (167)
297 3egc_A Putative ribose operon 24.6 1.8E+02 0.0062 23.3 6.7 45 2-46 10-73 (291)
298 2yv1_A Succinyl-COA ligase [AD 24.3 2.1E+02 0.0072 24.1 7.2 71 2-83 152-243 (294)
299 2yvt_A Hypothetical protein AQ 24.3 1.2E+02 0.0041 24.1 5.5 35 1-46 6-41 (260)
300 3c97_A Signal transduction his 24.2 56 0.0019 23.1 3.1 42 2-43 12-60 (140)
301 3otg_A CALG1; calicheamicin, T 24.1 77 0.0026 27.1 4.5 45 1-45 21-75 (412)
302 1jbe_A Chemotaxis protein CHEY 24.1 93 0.0032 21.3 4.3 43 1-43 5-55 (128)
303 1f0k_A MURG, UDP-N-acetylgluco 24.0 1.5E+02 0.0052 24.6 6.3 62 5-80 217-283 (364)
304 1ks9_A KPA reductase;, 2-dehyd 23.9 87 0.003 25.5 4.6 29 1-30 1-30 (291)
305 2qvg_A Two component response 23.6 43 0.0015 23.7 2.3 42 2-43 9-65 (143)
306 1k66_A Phytochrome response re 23.4 50 0.0017 23.3 2.7 44 1-44 7-69 (149)
307 2yv2_A Succinyl-COA synthetase 23.2 1.8E+02 0.0061 24.6 6.5 71 2-81 153-244 (297)
308 2nu8_A Succinyl-COA ligase [AD 23.1 2.7E+02 0.0092 23.2 7.7 70 2-81 146-236 (288)
309 3klb_A Putative flavoprotein; 23.0 91 0.0031 23.6 4.2 27 2-28 6-35 (162)
310 3fni_A Putative diflavin flavo 22.9 98 0.0034 23.4 4.4 44 2-45 6-64 (159)
311 4dad_A Putative pilus assembly 22.9 1.3E+02 0.0044 21.2 4.9 72 2-79 22-103 (146)
312 1j5p_A Aspartate dehydrogenase 22.8 2.3E+02 0.0078 23.6 6.9 67 1-81 13-94 (253)
313 1vim_A Hypothetical protein AF 22.6 2.2E+02 0.0076 22.0 6.7 65 14-87 64-133 (200)
314 2r48_A Phosphotransferase syst 22.5 67 0.0023 23.2 3.1 46 1-46 3-66 (106)
315 3ph3_A Ribose-5-phosphate isom 22.4 79 0.0027 24.9 3.7 31 1-31 21-54 (169)
316 4aj2_A L-lactate dehydrogenase 22.3 99 0.0034 26.8 4.7 46 1-47 20-97 (331)
317 3u3x_A Oxidoreductase; structu 22.2 3.7E+02 0.013 22.9 9.5 28 1-29 27-56 (361)
318 1pjq_A CYSG, siroheme synthase 22.2 2.9E+02 0.0098 24.8 8.1 30 1-31 13-43 (457)
319 3mm4_A Histidine kinase homolo 22.1 59 0.002 25.3 3.0 79 1-88 62-171 (206)
320 1v8a_A Hydroxyethylthiazole ki 22.1 1.7E+02 0.0058 24.2 6.1 34 12-45 27-65 (265)
321 2bmv_A Flavodoxin; electron tr 22.0 66 0.0023 24.1 3.2 43 1-44 2-51 (164)
322 2p6p_A Glycosyl transferase; X 21.8 81 0.0028 26.8 4.1 32 1-32 1-37 (384)
323 2ayx_A Sensor kinase protein R 21.8 77 0.0026 25.6 3.8 69 1-79 130-209 (254)
324 3e61_A Putative transcriptiona 21.6 3E+02 0.01 21.7 7.8 44 2-45 10-72 (277)
325 1f06_A MESO-diaminopimelate D- 21.5 1.8E+02 0.006 24.7 6.2 45 1-46 4-67 (320)
326 1srr_A SPO0F, sporulation resp 21.5 66 0.0022 22.0 2.9 42 2-43 5-53 (124)
327 3he8_A Ribose-5-phosphate isom 21.4 87 0.003 24.1 3.7 31 1-31 1-34 (149)
328 3d02_A Putative LACI-type tran 21.0 3.2E+02 0.011 21.8 9.4 68 2-78 6-93 (303)
329 2phj_A 5'-nucleotidase SURE; S 20.9 64 0.0022 27.1 3.1 29 1-30 2-34 (251)
330 2a9o_A Response regulator; ess 20.9 74 0.0025 21.4 3.1 69 2-79 3-80 (120)
331 1tmy_A CHEY protein, TMY; chem 20.9 74 0.0025 21.5 3.1 73 1-79 3-83 (120)
332 3rc1_A Sugar 3-ketoreductase; 20.8 2.9E+02 0.0099 23.4 7.5 27 1-28 28-57 (350)
333 1mb3_A Cell division response 20.8 76 0.0026 21.6 3.1 43 1-43 2-51 (124)
334 3abi_A Putative uncharacterize 20.8 2.5E+02 0.0085 24.0 7.1 27 1-29 17-44 (365)
335 3h4t_A Glycosyltransferase GTF 20.7 40 0.0014 29.4 1.9 32 1-32 1-37 (404)
336 2oqr_A Sensory transduction pr 20.7 66 0.0022 25.1 3.1 70 2-80 6-84 (230)
337 3aon_B V-type sodium ATPase su 20.6 1E+02 0.0035 22.4 3.9 28 1-32 3-30 (115)
338 4had_A Probable oxidoreductase 20.5 2.3E+02 0.008 23.8 6.8 28 1-29 24-54 (350)
339 3l5o_A Uncharacterized protein 20.5 82 0.0028 26.7 3.7 41 2-46 143-195 (270)
340 2pr7_A Haloacid dehalogenase/e 20.4 1.2E+02 0.0041 21.0 4.3 31 1-31 2-42 (137)
341 1mvo_A PHOP response regulator 20.4 75 0.0026 22.1 3.1 42 2-43 5-53 (136)
342 3cfy_A Putative LUXO repressor 20.2 81 0.0028 22.3 3.2 42 2-43 6-54 (137)
343 3uuw_A Putative oxidoreductase 20.2 2E+02 0.0068 23.8 6.2 27 1-28 7-36 (308)
344 1rrv_A Glycosyltransferase GTF 20.2 94 0.0032 26.9 4.2 32 1-32 1-37 (416)
345 2q62_A ARSH; alpha/beta, flavo 20.2 1E+02 0.0035 25.4 4.2 30 1-30 35-72 (247)
346 3brs_A Periplasmic binding pro 20.1 2.6E+02 0.0089 22.2 6.8 45 2-46 7-74 (289)
347 2iuy_A Avigt4, glycosyltransfe 20.0 1.3E+02 0.0046 24.8 5.1 20 14-33 38-57 (342)
No 1
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-35 Score=248.13 Aligned_cols=190 Identities=22% Similarity=0.348 Sum_probs=143.9
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 2 ~I~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~-~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
||+|+++ .||+.|+.++|+++|++++++++++++.++|+||||| |. .+.+..+.. .+ .++.+.+.++|+||||
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l~~~D~lilPG~g~~~~~~~~~~~-~~---~i~~~~~~~~PvlGIC 79 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTE-RD---LIELVKRVEKPLLGIC 79 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHHHHCSEEEECCCSCHHHHHHHHHH-TT---CHHHHHHCCSCEEEET
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHHhCCCEEEECCCCCHHHHHHHHHh-cC---hHHHHHHcCCCEEEEc
Confidence 6999998 4688999999999999999999999999999999999 44 334455543 23 3455667899999999
Q ss_pred hhHHHHHHhhhccc---CCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--C
Q 025812 79 AGLIFLANKAVGQK---LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (247)
Q Consensus 79 ~G~QlL~~~~~~~~---~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~ 153 (247)
+|||+|+.++++.. .....+++++++++.+...+ ....++.+|+.+... ..+++++++++ .
T Consensus 80 lG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~------~~~~l~~~l~~~~~ 145 (211)
T 4gud_A 80 LGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTG--------DLPLPHMGWNTVQVK------EGHPLFNGIEPDAY 145 (211)
T ss_dssp HHHHTTSSEECCC----CCCEECCCSSSCEEEECCCT--------TSCSSEEEEECCEEC------TTCGGGTTCCTTCC
T ss_pred hhHhHHHHHhCCcccccCCccccceeccceEEEcccC--------Ccceeeccceeeeee------ccChhhcCCCCCcE
Confidence 99999999886532 12356899999999887422 245678888764321 35778887754 4
Q ss_pred eEEEEEEeCCCCCC---CCCCCCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHHHh
Q 025812 154 VDVLADYPVPSNKE---NAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMSE 209 (247)
Q Consensus 154 ~~~~hs~~~~~~~~---~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~~~ 209 (247)
++++|++.+++... +++++..+.++++++|++|+|||||++.+. +|++||+++|.+
T Consensus 146 ~~~~H~~~v~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~~ge 206 (211)
T 4gud_A 146 FYFVHSFAMPVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLELRGE 206 (211)
T ss_dssp EEEEESEECCCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC---
T ss_pred EEEEeeEEeCCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHHhcc
Confidence 67789988865442 456666788889999999999999998654 699999998863
No 2
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.7e-31 Score=224.24 Aligned_cols=187 Identities=46% Similarity=0.793 Sum_probs=139.1
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+|+++.||+.++.++|++.|++++++++++++.++|+||||||.++.++.+.++..+.+.|++++++++|+||||+|
T Consensus 21 ~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 100 (208)
T 2iss_D 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAG 100 (208)
T ss_dssp CEEEEECSSSCHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred cEEEEEECCCchHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHH
Confidence 78999999999999999999999999999988888899999999998766555544566789999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~ 160 (247)
+|+|+.++++ ...+++|++++++.+.+.|.+...+..+..++.++|++ ++.++.+++.+..+++.+.++++.
T Consensus 101 ~QlL~~~~gg---~~~~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~v~a~~ 172 (208)
T 2iss_D 101 VILLAKRIKN---YSQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKDP-----FRAIFIRAPRIVETGKNVEILATY 172 (208)
T ss_dssp HHHHEEEEC------CCCCCCEEEEEETTTTCSGGGCEEEEECCGGGCSSC-----EEEEESSCCEEEEECSSCEEEEEE
T ss_pred HHHHHHHcCC---CCCCCccccceEEEecCCCcccccccCCcccccCCCCc-----eEEEEEeCcccccCCCCcEEEEEE
Confidence 9999999864 23678999999998764333222111122334455543 333223333333334455555442
Q ss_pred eCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHH
Q 025812 161 PVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 207 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~ 207 (247)
...+++++.++++|+|||||++.++.+++||++.|
T Consensus 173 ------------d~~~~a~~~~~i~GvQfHPE~~~~~~l~~~fl~~~ 207 (208)
T 2iss_D 173 ------------DYDPVLVKEGNILACTFHPELTDDLRLHRYFLEMV 207 (208)
T ss_dssp ------------TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHTTC
T ss_pred ------------CCEEEEEEECCEEEEEeCCCcCCcHHHHHHHHHHh
Confidence 14677888899999999999998778999999765
No 3
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.97 E-value=8.8e-31 Score=218.71 Aligned_cols=192 Identities=47% Similarity=0.838 Sum_probs=135.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+||++.|++.++.++|+++|++++++++++++.++|+||+|||.++.++.+.....+.+.|++++++++|+||||+|
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G 81 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG 81 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHH
Confidence 79999999999999999999999999999888888899999999998766555544456789999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~ 160 (247)
+|+|+.++++. ..+++|++++++++.+.|.+...+..+..++.+| ++++..+.+++.+..+++++.++++.
T Consensus 82 ~q~l~~~~gg~---~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g------~~~~~~~~h~~~v~~~~~~~~v~a~~ 152 (196)
T 2nv0_A 82 LIILAKEIAGS---DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLD------EPFTGVFIRAPHILEAGENVEVLSEH 152 (196)
T ss_dssp HHHHSBCCC-------CCCCCSCEEEECCCSCTTTSEEEEEECCTTCS------SCEEEEEESCCEEEEECTTCEEEEEE
T ss_pred HHHHHHHhcCC---CCCcccCCceeEeccCCCcccccccCCcccccCC------CceEEEEEecceecccCCCcEEEEEE
Confidence 99999998642 2578999999987653222211110011111111 11222222222222233333333332
Q ss_pred eCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhcccC
Q 025812 161 PVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGEG 213 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~~~~ 213 (247)
...+++++.++++|+|||||++.+..++++|++.|++.++.
T Consensus 153 ------------d~~~~a~~~~~~~gvQfHPE~~~~~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 153 ------------NGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp ------------TTEEEEEEETTEEEESSCTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred ------------CCEEEEEEECCEEEEEECCccCCchHHHHHHHHHHHhhhhh
Confidence 24567888899999999999998778999999999876543
No 4
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=5.2e-30 Score=212.38 Aligned_cols=182 Identities=38% Similarity=0.675 Sum_probs=126.4
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+||++.|++.++.++|+++|++++++++++++.++|+||||||+++.++.+..++++.+.|+ +.++|+||||+|
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G 77 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAG 77 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHH
Confidence 89999999999999999999999999999887788999999999998766655544456666665 679999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec-CCCeEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLAD 159 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l-~~~~~~~hs 159 (247)
||+|+.+++ +..+++|++++++.+...+++..++.....++.+ .+++.++.++..+..+ ++++.++++
T Consensus 78 ~Qll~~~~g----g~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~H~~~v~~l~~~~~~v~a~ 146 (186)
T 2ywj_A 78 MVLLSKGTG----INQILLELMDITVKRNAYGRQVDSFEKEIEFKDL-------GKVYGVFIRAPVVDKILSDDVEVIAR 146 (186)
T ss_dssp HHHHSSCCS----SCCCCCCCSSEEEETTTTCSSSCCEEEEEEETTT-------EEEEEEESSCCEEEEECCTTCEEEEE
T ss_pred HHHHHHHhC----CCcCccCCCceeEEeccCCCcccceecccccccC-------CcEEEEEEecceeeecCCCCeEEEEE
Confidence 999999963 3356788888887654222111111000001110 0111111222222233 334444333
Q ss_pred EeCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCc-hHHHHHHHHHHH
Q 025812 160 YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWHSYFLKMMS 208 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~-~~i~~nfl~~~~ 208 (247)
. ...+++++.++++|+|||||++.+ ..+++||++.|+
T Consensus 147 s------------d~~~~a~~~~~~~gvQfHPE~~~~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 147 D------------GDKIVGVKQGKYMALSFHPELSEDGYKVYKYFVENCV 184 (186)
T ss_dssp E------------TTEEEEEEETTEEEESSCGGGSTTHHHHHHHHHHHHT
T ss_pred E------------CCEEEEEeeCCEEEEECCCCcCCchhHHHHHHHHHHh
Confidence 2 245788888999999999999987 479999999875
No 5
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.97 E-value=1.4e-30 Score=222.42 Aligned_cols=202 Identities=38% Similarity=0.658 Sum_probs=140.0
Q ss_pred CEEEEEecCCChHHHHHHHHhC---CCeEEEECCccCCCCCCEEEECCCchhHHHHHHhh--CCHHHHHHHHHHc-CCcE
Q 025812 1 MVVGVLALQGSFNEHIAALKRL---GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEY--HNLFPALREFVKM-GKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~---G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~--~~~~~~i~~~~~~-g~Pi 74 (247)
|+|+|+++++++.++.++|+++ |++++++++++++.++|+||||||+++.++.+.++ ..+.+.|++++++ ++|+
T Consensus 4 ~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~Pi 83 (227)
T 2abw_A 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI 83 (227)
T ss_dssp EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred cEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcCccccccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEE
Confidence 5799999999999999999999 99999998877788899999999987665544322 3467899999999 9999
Q ss_pred EEEehhHHHHHHhhhcccCCC----cccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec
Q 025812 75 WGTCAGLIFLANKAVGQKLGG----QELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~----~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l 150 (247)
||||+|||+|++++++.+..+ .+++|++++++.++..|.+..++.....++++. ....++++.++.+++....+
T Consensus 84 lGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~h~~~v~~~ 161 (227)
T 2abw_A 84 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS--SAFKKDLTAACIRAPYIREI 161 (227)
T ss_dssp EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCC--TTCCTTCEEEEESCCEEEEE
T ss_pred EEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCcccccccccccccccc--ccCCCceeEEEEEcceEeec
Confidence 999999999999987643121 678999999887654333222221112222210 00112244444444444444
Q ss_pred -CCCeEEEEEEeCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhc
Q 025812 151 -GPDVDVLADYPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 210 (247)
Q Consensus 151 -~~~~~~~hs~~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~ 210 (247)
++++.++.+.... ..++..+++++.+|++|+|||||++.+..|++||++.|++.
T Consensus 162 ~~~~~~vla~~~~~------~~g~~~~~a~~~~~v~gvQfHPE~~~~~~l~~~Fl~~~~~~ 216 (227)
T 2abw_A 162 LSDEVKVLATFSHE------SYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYFYEKVKNY 216 (227)
T ss_dssp CCTTCEEEEEEEET------TTEEEEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcccc------cCCCCceEEEEECCEEEEEECCeeCCCcHHHHHHHHHHHhh
Confidence 4555554443200 00135677888999999999999998889999999998643
No 6
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.97 E-value=5.8e-30 Score=212.47 Aligned_cols=183 Identities=43% Similarity=0.651 Sum_probs=131.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC-CcEEEEeh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCA 79 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g-~PilGIC~ 79 (247)
|+|+|+..+||+.++.++|+++|+++++++++++++++|+||||||+++.++.+..+..+.+.|+++++++ +|+||||+
T Consensus 3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~ 82 (191)
T 2ywd_A 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCA 82 (191)
T ss_dssp CCEEEECSSSCHHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETH
T ss_pred cEEEEEecCCchHHHHHHHHHCCCEEEEeCChhhhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECH
Confidence 46999999999999999999999999999988888899999999997655566654467789999999999 99999999
Q ss_pred hHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEE
Q 025812 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD 159 (247)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs 159 (247)
|+|+|+.++++. +..+++|++++++.+.+.|++..++.....++. + ..+ ..+++||
T Consensus 83 G~Q~l~~~~gg~--~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~-~~~--~~~~~Hs 138 (191)
T 2ywd_A 83 GAIWLAKEIVGY--PEQPRLGVLEAWVERNAFGRQVESFEEDLEVEG-------------------L-GSF--HGVFIRA 138 (191)
T ss_dssp HHHHHEEEETTC--TTCCCCCCEEEEEETTCSCCSSSEEEEEEEETT-------------------T-EEE--EEEEESC
T ss_pred HHHHHHHHhCCC--CCCccccccceEEEcCCcCCccccccccccccC-------------------C-Cce--eEEEEcc
Confidence 999999998641 236789999998876532221111100000110 0 000 1233555
Q ss_pred EeCC--CCCC--CCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 160 YPVP--SNKE--NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 160 ~~~~--~~~~--~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
+++. +... .+..+ ..+++++.++++|+|||||++.+..|++||++.|+
T Consensus 139 ~~v~~l~~~~~~~a~~~-~~~~a~~~~~~~gvQfHPE~~~~~~l~~~f~~~~~ 190 (191)
T 2ywd_A 139 PVFRRLGEGVEVLARLG-DLPVLVRQGKVLASSFHPELTEDPRLHRYFLELAG 190 (191)
T ss_dssp CEEEEECTTCEEEEEET-TEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHT
T ss_pred cceeccCCCcEEEEEEC-CEEEEEEECCEEEEEeCCCCCCCcHHHHHHHHHhc
Confidence 5431 1111 11112 56889999999999999999887799999998874
No 7
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.97 E-value=1.1e-29 Score=216.05 Aligned_cols=190 Identities=50% Similarity=0.854 Sum_probs=135.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
|||+|+++.|++.+++++|++.|+++++++++++++++|+||||||+++.++.+.+...+.+.|++++++++|+||||+|
T Consensus 24 ~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 103 (219)
T 1q7r_A 24 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAG 103 (219)
T ss_dssp CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred CEEEEEeCCCCcHHHHHHHHHCCCEEEEECCHHHHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHH
Confidence 68999999999999899999999999999988888999999999998765555544456788999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeEEEEEE
Q 025812 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (247)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~ 160 (247)
+|+|+.++++. ..+++|++++++.+.+.|.+...+.....++.++ ++++.++.+++.++.+++++.++++.
T Consensus 104 ~QlL~~~~gg~---~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g------~~~~~~~~h~~~v~~l~~~~~v~a~s 174 (219)
T 1q7r_A 104 LILLAKRIVGY---DEPHLGLMDITVERNSFGRQRESFEAELSIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY 174 (219)
T ss_dssp HHHHEEEEESS---CCCCCCCEEEEEECHHHHCCCCCEEEEEEETTTE------EEEEEEESSCCEEEEECTTCEEEEEE
T ss_pred HHHHHHHhCCC---CcCCcCccceEEEecCCCccccceecCcccCCCC------CceEEEEEecceeeccCCCcEEEEEc
Confidence 99999998642 2578999998887643222111110001111110 11222222222222333344433332
Q ss_pred eCCCCCCCCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhcc
Q 025812 161 PVPSNKENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVG 211 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~~ 211 (247)
...+++++.++++|+|||||++.+..++++|++.|++++
T Consensus 175 ------------dg~~ea~~~~~i~GvQfHPE~~~~~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 175 ------------NDRIVAARQGQFLGCSFHPELTDDHRLMQYFLNMVKEAK 213 (219)
T ss_dssp ------------TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHHHHH
T ss_pred ------------CCEEEEEEECCEEEEEECcccCCCHHHHHHHHHHHHHhh
Confidence 245788888999999999999987789999999998654
No 8
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.96 E-value=7.5e-30 Score=213.95 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=135.9
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC-Cch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GES-TTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG-G~~-~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|||+|++++ +|+.++.++|+++|+++++++++++++++|+||||| |.+ +.+.++++ ..+.+.|+++++.++|+|||
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PilGI 81 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI 81 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHh-cCHHHHHHHHHHcCCeEEEE
Confidence 589999875 689999999999999999999888888999999999 543 33445432 35788999999999999999
Q ss_pred ehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC-CeEE
Q 025812 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV 156 (247)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 156 (247)
|+|+|+|+.++++. |+.+++|++++++.+.+. .+.+++||+.+.. .. . +.++++ .+++
T Consensus 82 C~G~Qll~~~~~~~--Gg~~~l~~~~g~v~~~~~----------~~~~~~G~~~v~~-------~~-~-l~~~~~~~~~~ 140 (200)
T 1ka9_H 82 CVGMQVLYEGSEEA--PGVRGLGLVPGEVRRFRA----------GRVPQMGWNALEF-------GG-A-FAPLTGRHFYF 140 (200)
T ss_dssp THHHHTTSSEETTS--TTCCCCCSSSSEEEECCS----------SSSSEEEEEECEE-------CG-G-GGGGTTCEEEE
T ss_pred cHHHHHHHHhcccc--CCcCCccccccEEEECCC----------CCCCceeEEEEEe-------ch-h-hhcCCCCCEEE
Confidence 99999999996431 337889999999987520 1467889986532 12 3 555533 3467
Q ss_pred EEEEeCCCCC----CCCCC-CCcEEEEEeeCCEEEEeeCCCCCCch--HHH---HHHHHHH
Q 025812 157 LADYPVPSNK----ENAMP-EKKVIVAVRQGNLLGTAFHPELTADT--RWH---SYFLKMM 207 (247)
Q Consensus 157 ~hs~~~~~~~----~~~~~-~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~---~nfl~~~ 207 (247)
+||+++ +.. +++++ ++..++...+++++|+|||||++.+. .|+ +||+++|
T Consensus 141 ~Hs~~~-~~~~~~va~s~~~g~~~~~~~~~~~i~gvQfHPE~~~~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 141 ANSYYG-PLTPYSLGKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYFEVL 200 (200)
T ss_dssp EESEEC-CCCTTCCEEEEETTEEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC---
T ss_pred eccccc-CCCCCcEEEEEeCCeEEEEEEeeCCEEEEecCCCcCccchhHHHHHHHHHHhhC
Confidence 899988 422 12333 33455566677999999999999754 699 9998765
No 9
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.96 E-value=4.8e-29 Score=208.92 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=134.0
Q ss_pred CEEEEEecC-CChHHHHHHHHhCC-----CeEEEECCccCCCCCCEEEECCC-c-hhHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLG-----VKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G-----~~v~~~~~~~~l~~~d~lilpGG-~-~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
|||+||+++ ||+.++.++|+++| +++++++++++ .++|+|||||| . .+.++++++ ..+.+.|+++++.++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-~~~dglilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~ 78 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-DLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER 78 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-SCCSEEEECCCSCSHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-cCCCEEEECCCCcHHHHHHHHHh-hCHHHHHHHHHHcCC
Confidence 999999986 69999999999999 99999998878 89999999994 3 334666654 457899999999999
Q ss_pred cEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC
Q 025812 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~ 152 (247)
|+||||+|||+|+.++++. +..++++++++++.+.+. .+++++||+.+. ...+- -..
T Consensus 79 PilGIC~G~Qll~~~~g~~--G~~~~l~~~~g~v~~~~~----------~~~~~~g~~~l~--------~~~~~---~~~ 135 (201)
T 1gpw_B 79 YVVGVCLGMQLLFEESEEA--PGVKGLSLIEGNVVKLRS----------RRLPHMGWNEVI--------FKDTF---PNG 135 (201)
T ss_dssp EEEEETHHHHTTSSEETTE--EEEECCCSSSEEEEECCC----------SSCSEEEEEEEE--------ESSSS---CCE
T ss_pred eEEEEChhHHHHHHhhccC--CCCCCcceeeeEEEEcCC----------CCCCcccceeeE--------eccCC---CCC
Confidence 9999999999999998531 236778888888877521 145677876421 01000 011
Q ss_pred CeEEEEEEeCCCCCC----CCCC-CCcEEEEEeeCCEEEEeeCCCCCCch--HHHHHHHHHHHhc
Q 025812 153 DVDVLADYPVPSNKE----NAMP-EKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMSEV 210 (247)
Q Consensus 153 ~~~~~hs~~~~~~~~----~~~~-~~~~~~~~~~~~i~gvQFHPE~s~~~--~i~~nfl~~~~~~ 210 (247)
.++++|++.+.+... ++++ ++.+.+...+++++|+|||||++.+. .|++||++.|+++
T Consensus 136 ~v~~~H~~~v~~~~~~vla~s~~~g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~~~~ 200 (201)
T 1gpw_B 136 YYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSR 200 (201)
T ss_dssp EEEEEESEEEEECGGGEEEEEEETTEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHSSCC
T ss_pred eEEEECcceeccCCCEEEEEEccCCceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHhhcC
Confidence 345677777532121 2333 33444445567999999999999543 6999999988654
No 10
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.95 E-value=9e-28 Score=229.68 Aligned_cols=188 Identities=24% Similarity=0.366 Sum_probs=146.9
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEECCccC--CCCCCEEEECC-Cchh-HHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPG-GEST-TMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~--l~~~d~lilpG-G~~~-~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|+|+|+++. |++.++.++|+++|+++++++++++ +.++|+||||| |..+ .++.+.. ..+.+.|+++++.++|+|
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~~~l~~~DglILpGgG~~~~~~~~l~~-~~~~~~i~~~~~~g~PiL 83 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN-RGFEKPIREYIESGKPIM 83 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHH-TTCHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccccccccCCEEEECCCCchHhHhhhhhh-ccHHHHHHHHHHcCCcEE
Confidence 489999985 8999999999999999999988776 88999999999 5543 3445543 467889999999999999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--C
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--~ 153 (247)
|||+|||+|+.++++ +++.++||++++++.+.+. ...+++++||+.+.. . ++++..+++ .
T Consensus 84 GIC~G~QlL~~a~~e--gg~~~~Lg~lgg~v~~~~~--------~~~~~~~~G~~~v~~-------~-~~L~~~l~~~~~ 145 (555)
T 1jvn_A 84 GIXVGLQALFAGSVE--SPKSTGLNYIDFKLSRFDD--------SEKPVPEIGWNSCIP-------S-ENLFFGLDPYKR 145 (555)
T ss_dssp EEEHHHHTTEEEETT--BTTCCCCCSEEEEEEECCT--------TTSCSSEEEEECCCC-------C-TTCCTTCCTTSC
T ss_pred EEchhhhhhhhhhhc--CCCccccCCCCcEEEECCc--------CCCCCccccceEEEE-------c-CHHHhhCCCCce
Confidence 999999999998853 2457899999999987520 024678999987642 2 678877755 5
Q ss_pred eEEEEEEeCCCC---------C----CCCCCC-CcEEEEEeeCCEEEEeeCCCCCCc--hHHHHHHHHHH
Q 025812 154 VDVLADYPVPSN---------K----ENAMPE-KKVIVAVRQGNLLGTAFHPELTAD--TRWHSYFLKMM 207 (247)
Q Consensus 154 ~~~~hs~~~~~~---------~----~~~~~~-~~~~~~~~~~~i~gvQFHPE~s~~--~~i~~nfl~~~ 207 (247)
++++|||+++.. . +++.++ +.+++++++++++|+|||||++.+ ..+++||++..
T Consensus 146 ~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQ 215 (555)
T ss_dssp EEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHTTC
T ss_pred EEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeCCEEEEEeCcEecChhHHHHHHHHHhcc
Confidence 788999997431 1 123343 267889999999999999999865 36999999753
No 11
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.94 E-value=1.5e-26 Score=194.88 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=127.6
Q ss_pred CEEEEEecCCCh--HHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHH----HHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA----RLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~~--~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~----~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|||+||++++.. .++.++|+++|+++++++..+++.++|+||+|||.....+ .+.....+.++|++++++++|+
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pi 82 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLI 82 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEE
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCCCcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEE
Confidence 489999998764 5889999999999999987777889999999997432110 1222356789999999999999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-- 152 (247)
||||+|+|+|+.+ |++++++.+++. .+. +.||+.+.... .++++++.+++
T Consensus 83 lgIC~G~qlLa~a------------Gll~g~v~~~~~----------~~~-~~g~~~v~~~~-----~~~~l~~~~~~~~ 134 (213)
T 3d54_D 83 MGICNGFQILIEM------------GLLKGALLQNSS----------GKF-ICKWVDLIVEN-----NDTPFTNAFEKGE 134 (213)
T ss_dssp EECHHHHHHHHHH------------TSSCSEEECCSS----------SSC-BCCEEEEEECC-----CSSTTSTTSCTTC
T ss_pred EEECHHHHHHHHc------------CCCCCCeecCCC----------Cce-EeeeEEEEeCC-----CCCceeeccCCCC
Confidence 9999999999987 455677776521 112 56776533110 24678777754
Q ss_pred CeEE--EE---EEeCCCCC----CCCCC--C--CcEEEEEe-eCCEEEEeeCCCCCCc-----h---HHHHHHHHHHH
Q 025812 153 DVDV--LA---DYPVPSNK----ENAMP--E--KKVIVAVR-QGNLLGTAFHPELTAD-----T---RWHSYFLKMMS 208 (247)
Q Consensus 153 ~~~~--~h---s~~~~~~~----~~~~~--~--~~~~~~~~-~~~i~gvQFHPE~s~~-----~---~i~~nfl~~~~ 208 (247)
.+++ +| ++++.++. +.+++ + +.+.+... +++++|+|||||++.. . .+|+||++.|+
T Consensus 135 ~~~~~~~H~~~s~~~~~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 135 KIRIPIAHGFGRYVKIDDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYLK 212 (213)
T ss_dssp EEEEECCBSSCEEECSSCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHCC
T ss_pred EEEEEeecCceEEEecCCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHhh
Confidence 4666 68 88874332 22333 3 23443333 6789999999998872 2 69999998874
No 12
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.92 E-value=1.2e-25 Score=190.53 Aligned_cols=173 Identities=15% Similarity=0.217 Sum_probs=115.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC---ccCCCCCCEEEECCC-chhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~~~d~lilpGG-~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|||.++++.++|. ++.++|+++|+++++++. ++++.++|+|||||| +.+.++.+. .....+...+.++|+|
T Consensus 14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~p~~~~~~~~----~~~l~~~~~~~~~PiL 89 (212)
T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK----LGSVGKYIDDHNYPIL 89 (212)
T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG----HHHHHHHHHHCCSCEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCCCCCCccccc----chhHHHHHHhCCCCEE
Confidence 6899999877776 789999999999888765 456778999999999 544332210 0112233346899999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe-
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV- 154 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~- 154 (247)
|||+|||+|+.+++ +++.+.+ .+++||+.+... .++++++++++.+
T Consensus 90 GIC~G~Qll~~~lG--------------g~v~~~~-------------~~~~G~~~v~~~------~~~~l~~~~~~~~~ 136 (212)
T 2a9v_A 90 GICVGAQFIALHFG--------------ASVVKAK-------------HPEFGKTKVSVM------HSENIFGGLPSEIT 136 (212)
T ss_dssp EETHHHHHHHHHTT--------------CEEEEEE-------------EEEEEEEEEEES------CCCGGGTTCCSEEE
T ss_pred EEChHHHHHHHHhC--------------CEEEcCC-------------CcccCceeeEEC------CCChhHhcCCCceE
Confidence 99999999999862 4554431 245677653211 2456776665443
Q ss_pred -EEEEEEeCCC--CC----CCCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHHHHhccc
Q 025812 155 -DVLADYPVPS--NK----ENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMSEVGE 212 (247)
Q Consensus 155 -~~~hs~~~~~--~~----~~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~~~~~~~ 212 (247)
+..|++.+.. .. +++++ ..+++++ +++++|+|||||++.++ .++++|++.|+++++
T Consensus 137 v~~~H~~~v~~l~~~~~vlA~s~d--~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 137 VWENHNDEIINLPDDFTLAASSAT--CQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYRE 204 (212)
T ss_dssp EEEEEEEEEESCCTTEEEEEECSS--CSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHHHHHHH
T ss_pred EEeEhhhhHhhCCCCcEEEEEeCC--CCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHhhh
Confidence 4456665421 21 12333 2344554 36899999999998742 799999999876543
No 13
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.92 E-value=1.6e-25 Score=185.86 Aligned_cols=168 Identities=19% Similarity=0.237 Sum_probs=113.7
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~-~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
|.|+|+++.+. ..++.++|+++|+++++++..+ ++ .++|+||+|||. +. +. .....+.|+++.+.++|+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~-~~---~~~~~~~i~~~~~~~~Pi 75 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SL-EN---TGNCEKVLEHYDEFNVPI 75 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CT-TC---CTTHHHHHHTGGGTCSCE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Ch-hh---hhhHHHHHHHHhhCCCeE
Confidence 67999998665 4578999999999999887654 34 359999999996 22 11 123467787776889999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~ 154 (247)
||||+|+|+|+.+++ +++.+. ..+++||+.+... ..++++.++++.+
T Consensus 76 lGIC~G~Q~l~~~~g--------------g~v~~~-------------~~~~~G~~~~~~~------~~~~l~~~~~~~~ 122 (189)
T 1wl8_A 76 LGICLGHQLIAKFFG--------------GKVGRG-------------EKAEYSLVEIEII------DEXEIFKGLPKRL 122 (189)
T ss_dssp EEETHHHHHHHHHHT--------------CEEEEC-------------SCCSCEEEEEEES------CC--CCTTSCSEE
T ss_pred EEEcHHHHHHHHHhC--------------CceecC-------------CCcccCceeEEEe------cCchHHhCCCCce
Confidence 999999999999972 455442 1245677542210 2456666666667
Q ss_pred EEEEEEeCC----CCC----CCCCCCCcEEEEEe-eCC-EEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 155 DVLADYPVP----SNK----ENAMPEKKVIVAVR-QGN-LLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 155 ~~~hs~~~~----~~~----~~~~~~~~~~~~~~-~~~-i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
.++|+++.. +.. +++.++ .+++++ +++ ++|+|||||++.++ .+++||++.|+
T Consensus 123 ~~~~~h~~~v~~l~~~~~vla~s~~g--~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 123 KVWESHMDEVKELPPKFKILARSETC--PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLCG 187 (189)
T ss_dssp EEEECCSEEEEECCTTEEEEEEESSC--SCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHHC
T ss_pred EEEEEeeeehhhCCCCcEEEEEcCCC--CEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHHh
Confidence 777776642 111 122332 344554 334 99999999987643 79999999875
No 14
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.92 E-value=1e-24 Score=182.11 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=109.8
Q ss_pred CE-EEEEecCCChH-HHHHHHHhCCCeEEEECCcc----CCC--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 1 MV-VGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 1 m~-I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
|| |+||++.+++. ++.++|+++|+++++++..+ ++. ++|+||++||..+..+.. ...-..+.|++ ++.++
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~-~~~~~~~~i~~-~~~~~ 78 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRE-DIGVSLDVIKY-LGKRT 78 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHH-HHTTHHHHHHH-HTTTS
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhh-hhhHHHHHHHH-hcCCC
Confidence 77 99999988776 56899999999999887654 343 699999977643221110 11123467776 47899
Q ss_pred cEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecC--ceeeec
Q 025812 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA--PAVLDV 150 (247)
Q Consensus 73 PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~--~l~~~l 150 (247)
|+||||+|||+|+.+++ +++.+.+ ..++.+|+.+... .++ ++++++
T Consensus 79 PvLGIC~G~QlL~~~~g--------------g~v~~~~------------~~~~g~~~~v~~~------~~~~~~l~~~~ 126 (195)
T 1qdl_B 79 PILGVCLGHQAIGYAFG--------------AKIRRAR------------KVFHGKISNIILV------NNSPLSLYYGI 126 (195)
T ss_dssp CEEEETHHHHHHHHHTT--------------CEEEEEE------------EEEEEEEEEEEEC------CSSCCSTTTTC
T ss_pred cEEEEehHHHHHHHHhC--------------CEEeccC------------CCcCCCceEEEEC------CCCHhHHHhcC
Confidence 99999999999999962 4554431 1223334322100 123 666665
Q ss_pred CCC--eEEEEEEeCCC--CC----CCC-CCCCcEEEEEeeC--CEEEEeeCCCCCCch---HHHHHHHH
Q 025812 151 GPD--VDVLADYPVPS--NK----ENA-MPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 151 ~~~--~~~~hs~~~~~--~~----~~~-~~~~~~~~~~~~~--~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
++. ++++|++.+.. .. +++ +++ .+++++.+ +++|+|||||++..+ .+++||++
T Consensus 127 ~~~~~v~~~H~~~v~~l~~~~~vla~s~~~g--~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 127 AKEFKATRYHSLVVDEVHRPLIVDAISAEDN--EIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp CSEEEEEEEEEEEEECCCTTEEEEEEESSSC--CEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred CCceEEeccccchhhhCCCCcEEEEEECCCC--cEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 543 45678887632 22 123 332 45666543 899999999998733 79999996
No 15
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.90 E-value=2.3e-24 Score=185.26 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=116.9
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEECC------ccCCCCCCEEEECCCchhH------HHHHHhhCCHHHHHHH
Q 025812 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT------MARLAEYHNLFPALRE 66 (247)
Q Consensus 1 m~I~vl~~~G--~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~lilpGG~~~~------~~~l~~~~~~~~~i~~ 66 (247)
|||+||.... +...+.+++++.|+++.+++. ++++.++|+||++||..+. ..++.+ ....+.|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~-~~~~~~i~~ 79 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDA-QAEVKLIQK 79 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCH-HHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCcccch-HHHHHHHHH
Confidence 9999999743 567888999999999988753 3356789999999985431 122210 014678999
Q ss_pred HHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCce
Q 025812 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA 146 (247)
Q Consensus 67 ~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l 146 (247)
+++.++|+||||+|||+|+.+++ +++.+. ..+++||+.+.... .+ .++++
T Consensus 80 ~~~~~~PvLGIClG~QlL~~~~G--------------g~v~~~-------------~~~~~G~~~v~~~~-~~--~~~~l 129 (236)
T 3l7n_A 80 AAKSEKIIVGVCLGAQLMGVAYG--------------ADYLHS-------------PKKEIGNYLISLTE-AG--KMDSY 129 (236)
T ss_dssp HHHTTCEEEEETHHHHHHHHHTT--------------CCCEEE-------------EEEEEEEEEEEECT-TG--GGCGG
T ss_pred HHHcCCCEEEEchHHHHHHHHhC--------------CEEecC-------------CCceeeeEEEEEcc-Cc--ccChH
Confidence 99999999999999999999962 344432 13466776532110 00 13677
Q ss_pred eeecCCCeEE--EEEEeCC-CCCC----CCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhc
Q 025812 147 VLDVGPDVDV--LADYPVP-SNKE----NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 210 (247)
Q Consensus 147 ~~~l~~~~~~--~hs~~~~-~~~~----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~ 210 (247)
+.++++.+.+ .|++... +... ++++ +...+...+++++|+|||||++ ..++++|++.+++.
T Consensus 130 ~~~~~~~~~v~~~H~~~~~lp~~~~vla~s~~-~~~~a~~~~~~v~gvQfHPE~~--~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 130 LSDFSDDLLVGHWHGDMPGLPDKAQVLAISQG-CPRQIIKFGPKQYAFQCHLEFT--PELVAALIAQEDDL 197 (236)
T ss_dssp GTTSCSEEEEEEEEEEECCCCTTCEEEEECSS-CSCSEEEEETTEEEESSBSSCC--HHHHHHHHHHCSCH
T ss_pred HhcCCCCcEEEEecCCcccCCChheEEEECCC-CCEEEEEECCCEEEEEeCCCCC--HHHHHHHHHhhhhh
Confidence 7777665544 4555422 1111 2322 2333334467999999999998 57899999887643
No 16
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.90 E-value=1e-22 Score=169.46 Aligned_cols=169 Identities=19% Similarity=0.163 Sum_probs=101.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc---CC----C--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL----Q--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~---~l----~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~ 70 (247)
|||+|+++.+++. +++++|+++|++++++++.. ++ . +.|.+|++||..+..+ .++...+.++++.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~-----~~~~~~l~~~~~~ 75 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE-----AGCMPELLTRLRG 75 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG-----STTHHHHHHHHBT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh-----CchHHHHHHHHhc
Confidence 6899999988887 67899999999999887653 22 1 2345777665432211 1233344455678
Q ss_pred CCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeec
Q 025812 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (247)
Q Consensus 71 g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l 150 (247)
++|+||||+|||+|+.+++.. +.+.+ -+..|+... .. ..+++++.++
T Consensus 76 ~~PilGIC~G~Qll~~~~Gg~--------------v~~~~-------------~~~~g~~~~----~~--~~~~~l~~~~ 122 (192)
T 1i1q_B 76 KLPIIGICLGHQAIVEAYGGY--------------VGQAG-------------EILHGKATS----IE--HDGQAMFAGL 122 (192)
T ss_dssp TBCEEEETHHHHHHHHHTSCC--------------CCC----------------CCSSEEEE----EE--ECCCGGGTTS
T ss_pred CCCEEEECcChHHHHHHhCCE--------------EEeCC-------------CcEecceeE----Ee--cCCChHHhcC
Confidence 999999999999999997321 11100 001111100 00 0124555555
Q ss_pred CCC--eEEEEEEeCCC-CC-C--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 151 GPD--VDVLADYPVPS-NK-E--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 151 ~~~--~~~~hs~~~~~-~~-~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
++. ++++|++.+.. .+ . .+.+ ...+++++ +++++|+|||||++..+ ++++||++++.
T Consensus 123 ~~~~~v~~~H~~~v~~lp~~~~v~a~~-~~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 123 ANPLPVARYHSLVGSNVPAGLTINAHF-NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp CSSEEEEECCC---CCCCTTCEEEEEE-TTEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred CCCcEEEechhhHhhhCCCccEEEECC-CCcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 443 34456665422 11 1 1222 24566766 67999999999998532 79999998874
No 17
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.89 E-value=2.8e-24 Score=182.90 Aligned_cols=168 Identities=19% Similarity=0.247 Sum_probs=109.3
Q ss_pred EEEEEecCCCh-HHHHHHHHhCCCeEEEECCcc---CC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSF-NEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~-~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
||+||++.+.+ .++.++|+++|+++++++... ++ .++|+||||||..+.++. ....+. +++++.++|+|
T Consensus 26 ~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~--~~~~~~---~~~~~~~~Pil 100 (218)
T 2vpi_A 26 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAE--DAPWFD---PAIFTIGKPVL 100 (218)
T ss_dssp CEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC-----------CCCCC---GGGGTSSCCEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccc--cchhHH---HHHHHcCCCEE
Confidence 69999986655 478899999999999876532 33 369999999987544321 111222 33346799999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~-- 153 (247)
|||+|+|+|+.+++ +++.+.+ .+++||+.+... .++++++++++.
T Consensus 101 GIC~G~Qll~~~~G--------------G~v~~~~-------------~~~~G~~~v~~~------~~~~l~~~l~~~~~ 147 (218)
T 2vpi_A 101 GICYGMQMMNKVFG--------------GTVHKKS-------------VREDGVFNISVD------NTCSLFRGLQKEEV 147 (218)
T ss_dssp EETHHHHHHHHHTT--------------CCEEEEE-------------ECSCEEEEEEEC------TTSGGGTTCCSEEE
T ss_pred EEcHHHHHHHHHhC--------------CceEeCC-------------CCcccEEEEEEc------cCChhHhcCCCCcE
Confidence 99999999999862 4555531 235677643211 246777766543
Q ss_pred eEEEEEEeCCC--CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHH-HHHH
Q 025812 154 VDVLADYPVPS--NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFL-KMMS 208 (247)
Q Consensus 154 ~~~~hs~~~~~--~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl-~~~~ 208 (247)
++++|++.+.. ... .+.. ...+++++ +++++|+|||||++.++ .|++||+ +.|+
T Consensus 148 v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 148 VLLTHGDSVDKVADGFKVVARS-GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAG 211 (218)
T ss_dssp EEECSEEEESSCCTTCEEEEEE-TTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTC
T ss_pred EeehhhhHhhhcCCCCEEEEEc-CCeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhC
Confidence 55678877632 211 1111 24677877 67899999999998743 7999999 7764
No 18
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.89 E-value=9.9e-24 Score=183.02 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=114.9
Q ss_pred CEEEEEecC--CChHHHHHHHHhCCCeEEEECC------ccCCCCCCEEEECCCchhH---HHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~--G~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~lilpGG~~~~---~~~l~~~~~~~~~i~~~~~ 69 (247)
|||+||... .+..++.++|++.|+++++++. ++++.++|+||||||..+. ++++. ...++|+++++
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~---~~~~~i~~~~~ 80 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMP---TLLALIRDAVA 80 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHH---HHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccchHHH---HHHHHHHHHHH
Confidence 469999853 4677899999999999988762 3356789999999985432 23342 24678888888
Q ss_pred cCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeee
Q 025812 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (247)
Q Consensus 70 ~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~ 149 (247)
.++|+||||+|+|+|+.++ | ++|.+. +.+++||+.+..... . ..+++| +
T Consensus 81 ~~~PvlGIC~G~Qll~~~l-----------G---G~V~~~-------------~~~e~G~~~v~~~~~-~--~~~~l~-g 129 (250)
T 3m3p_A 81 QRVPVIGHCLGGQLLAKAM-----------G---GEVTDS-------------PHAEIGWVRAWPQHV-P--QALEWL-G 129 (250)
T ss_dssp HTCCEEEETHHHHHHHHHT-----------T---CCEEEE-------------EEEEEEEEEEEECSS-H--HHHHHH-S
T ss_pred cCCCEEEECHHHHHHHHHh-----------C---CEEEeC-------------CCCceeeEEEEEecC-C--CCcccc-c
Confidence 9999999999999999996 2 566654 236788876432100 0 024677 6
Q ss_pred cCCCe--EEEEEEeCCC-CCC----CCCCCCcEEEEEe-eCCEEEEeeCCCCCCchHHHHHHHHHHH
Q 025812 150 VGPDV--DVLADYPVPS-NKE----NAMPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLKMMS 208 (247)
Q Consensus 150 l~~~~--~~~hs~~~~~-~~~----~~~~~~~~~~~~~-~~~i~gvQFHPE~s~~~~i~~nfl~~~~ 208 (247)
+++.+ +.+|++.+.. +.. ++++ + .+++++ .++++|+|||||++. ..+++|++..+
T Consensus 130 ~~~~~~v~~~H~~~v~lp~~~~vlA~s~~-~-~~~a~~~~~~~~GvQfHPE~~~--~~~~~~l~~~~ 192 (250)
T 3m3p_A 130 TWDELELFEWHYQTFSIPPGAVHILRSEH-C-ANQAYVLDDLHIGFQCHIEMQA--HMVREWCSISP 192 (250)
T ss_dssp CSSCEEEEEEEEEEECCCTTEEEEEEETT-E-EEEEEEETTTEEEESSCTTCCH--HHHHHHHHHCG
T ss_pred CCCccEEEEEccceeecCCCCEEEEEeCC-C-CEEEEEECCeeEEEEeCCcCCH--HHHHHHHHhhH
Confidence 66554 4567766522 221 2333 3 445554 578999999999986 45666665543
No 19
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.89 E-value=1.4e-23 Score=180.78 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=116.0
Q ss_pred CEEEEEec--CCChHHHHHHHHhCCCeEEEECC------ccCCCCCCEEEECCCchhH-----HHHHHhhCCHHHHHHHH
Q 025812 1 MVVGVLAL--QGSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREF 67 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~lilpGG~~~~-----~~~l~~~~~~~~~i~~~ 67 (247)
+||.||.. .+|..++.++|+..|++++++.. ++++.++|+||||||..+. ++++. ...+.|+++
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~---~~~~~i~~~ 89 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK---YEFQLIEEI 89 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH---HHHHHHHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH---HHHHHHHHH
Confidence 36788875 35677899999999999986643 2345789999999985322 33443 246788999
Q ss_pred HHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccC-CcccccCCCCcceeeeeecCce
Q 025812 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPA 146 (247)
Q Consensus 68 ~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v-~~~Gw~~~~~~~~~~~~~~~~l 146 (247)
++.++|+||||+|||+|+.+++ +++.+.+ . +++||+.+.. ..++++
T Consensus 90 ~~~~~PiLGIC~G~QlL~~alG--------------G~v~~~~-------------~g~~~G~~~v~~------~~~~~l 136 (239)
T 1o1y_A 90 LKKEIPFLGICLGSQMLAKVLG--------------ASVYRGK-------------NGEEIGWYFVEK------VSDNKF 136 (239)
T ss_dssp HHHTCCEEEETHHHHHHHHHTT--------------CCEEECT-------------TCCEEEEEEEEE------CCCCGG
T ss_pred HHCCCCEEEEchhHHHHHHHcC--------------CeEecCC-------------CCCccccEEEEE------CCCCch
Confidence 8899999999999999999962 4555532 2 4667764321 024577
Q ss_pred eeecCCCe--EEEEEEeCCC-CCC----CCCCCCcEEEEEeeCCEEEEeeCCCCCCchHHHHHHHHHHHhc
Q 025812 147 VLDVGPDV--DVLADYPVPS-NKE----NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 210 (247)
Q Consensus 147 ~~~l~~~~--~~~hs~~~~~-~~~----~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~~i~~nfl~~~~~~ 210 (247)
++.+++.+ +.+|++.+.. ... ++++ ..+++++.++++|+|||||++. .++++|++..++.
T Consensus 137 ~~~~~~~~~~~~~H~~~v~lp~~~~vlA~s~~--~~iea~~~~~i~gvQfHPE~~~--~~~~~~~~~~~~~ 203 (239)
T 1o1y_A 137 FREFPDRLRVFQWHGDTFDLPRRATRVFTSEK--YENQGFVYGKAVGLQFHIEVGA--RTMKRWIEAYKDE 203 (239)
T ss_dssp GTTSCSEEEEEEEESEEECCCTTCEEEEECSS--CSCSEEEETTEEEESSBSSCCH--HHHHHHHHHTHHH
T ss_pred HHhCCCCceeEeecCCccccCCCCEEEEEcCC--CCEEEEEECCEEEEEeCccCCH--HHHHHHHHHhHHH
Confidence 76665543 4457666522 221 2232 2345777777999999999976 5889998876543
No 20
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.89 E-value=6.3e-23 Score=178.19 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=109.0
Q ss_pred HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCch---hHHH-----HH-----HhhCCHHHHHHHHHHcCCcE
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES---TTMA-----RL-----AEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~---~~~~-----~l-----~~~~~~~~~i~~~~~~g~Pi 74 (247)
+++++|+++|+.+++++...+ ++.+|+||||||.+ +.+. ++ .++....+.|+++++.++|+
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~Pi 111 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPI 111 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCE
Confidence 688999999999998875432 56899999999842 2110 00 00011367899999999999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCe
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~ 154 (247)
||||+|||+|+.+++.. -.+.++.+++....+ ...+.+++||+.+... .++++++.+++.+
T Consensus 112 LGIC~G~Qll~~a~Gg~---v~~~~~~~~~~~~~h----------~~~~~~~~g~~~v~~~------~~s~l~~~~~~~~ 172 (254)
T 3fij_A 112 FAICRGMQLVNVALGGT---LYQDISQVETKALQH----------LQRVDEQLGSHTIDIE------PTSELAKHHPNKK 172 (254)
T ss_dssp EEETHHHHHHHHHTTCC---EESSGGGSSSCCCCC----------BCCSCTTSCCEEEEEC------TTSSGGGTCCTTE
T ss_pred EEECHHHHHHHHHhCCc---eecccccccCccccc----------cCCCCCccceEEEEeC------CCChHHHhcCCcE
Confidence 99999999999997421 123333222211110 0112456777654321 2455665555433
Q ss_pred EEEEEEeCC---C-CC-----CCCCCCCcEEEEEeeC----CEEEEeeCCCCCCc-----hHHHHHHHHHHHhcc
Q 025812 155 DVLADYPVP---S-NK-----ENAMPEKKVIVAVRQG----NLLGTAFHPELTAD-----TRWHSYFLKMMSEVG 211 (247)
Q Consensus 155 ~~~hs~~~~---~-~~-----~~~~~~~~~~~~~~~~----~i~gvQFHPE~s~~-----~~i~~nfl~~~~~~~ 211 (247)
.+|+++.. . .+ +++.+ ..+++++.+ +++|+|||||++.. ..||+||++.|++++
T Consensus 173 -~v~~~H~~~v~~l~~g~~v~a~s~d--g~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 173 -LVNSLHHQFIKKLAPSFKVTARTAD--GMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp -EECCBCSCEESSCCSSEEEEEEETT--CCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred -EEEEeccchhhccCCCcEEEEEeCC--CcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 34444422 1 11 12222 357787766 69999999999874 269999999998544
No 21
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.88 E-value=1.6e-23 Score=199.28 Aligned_cols=167 Identities=18% Similarity=0.228 Sum_probs=104.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEEC---CccCCCC--CCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIR---KPDQLQN--VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~---~~~~l~~--~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
||+||+|.+++. ++.++|+++|+.+++++ +++++.+ +|+||||||+.+.++. +.....+..++.++|+|
T Consensus 12 ~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~-----~~~~~~~~~~~~~~PvL 86 (527)
T 3tqi_A 12 RILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLS-----HTLRAPAFIFEIGCPVL 86 (527)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC--------------CCCSTTTSSSCEE
T ss_pred eEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccC-----CChhhHHHHHhcCCCEE
Confidence 799999977666 78899999999988864 3445654 4999999997654321 11222344556799999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC---
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--- 152 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~--- 152 (247)
|||+|||+|+.+++ |+|.+. ..+++||+.+... .++++|+++++
T Consensus 87 GIC~G~Qlla~~lG--------------G~V~~~-------------~~~e~G~~~v~~~------~~~~l~~~l~~~~~ 133 (527)
T 3tqi_A 87 GICYGMQTMAYQLG--------------GKVNRT-------------AKAEFGHAQLRVL------NPAFLFDGIEDQVS 133 (527)
T ss_dssp EETHHHHHHHHHSS--------------SCBC------------------CEEEEEEEES------SCTTTTSSCCSBCC
T ss_pred EEChHHHHHHHHcC--------------CeEEeC-------------CCccccceEEEEc------CCChhhcCCccccc
Confidence 99999999999863 333332 1235666543211 13567766654
Q ss_pred -----C--eEEEEEEeCCC--CCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHH
Q 025812 153 -----D--VDVLADYPVPS--NKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKM 206 (247)
Q Consensus 153 -----~--~~~~hs~~~~~--~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~ 206 (247)
. +++.|++.+.. ... .+......+++++ ++++||+|||||++.++ .+++||+..
T Consensus 134 ~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~ 203 (527)
T 3tqi_A 134 PQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIH 203 (527)
T ss_dssp TTSCCEEEEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHT
T ss_pred cccccceEEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhh
Confidence 2 33445554422 111 1111224456665 57899999999999864 699999953
No 22
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.87 E-value=4.7e-22 Score=181.50 Aligned_cols=164 Identities=14% Similarity=0.219 Sum_probs=107.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCc---cCC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~---~~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|+|+|+++ |...+++++|+++|+++++++.. +++ .++|+|||+||+.+..+. ....+.|+++++.++|+|
T Consensus 191 ~~V~viD~-G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~----~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 191 FHVVAYDF-GAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC----DYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEEES-SCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC----HHHHHHHHHHTTSCCCEE
T ss_pred CEEEEEEC-CChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH----HHHHHHHHHHHHcCCCEE
Confidence 37999998 66678999999999999988543 223 369999999986433211 123678888888899999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC-Ce
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DV 154 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-~~ 154 (247)
|||+|||+|+.+++ +++.+++ .+|.||+. |+. .++. .+
T Consensus 266 GIClG~QLLa~A~G--------------G~v~k~~-------------~gh~g~n~-------------pv~-~~~~g~v 304 (379)
T 1a9x_B 266 GICLGHQLLALASG--------------AKTVKMK-------------FGHHGGNH-------------PVK-DVEKNVV 304 (379)
T ss_dssp EETHHHHHHHHHTT--------------CCEEEEE-------------EEEEEEEE-------------EEE-ETTTTEE
T ss_pred EECchHHHHHHHhC--------------cEEEecc-------------cccccCce-------------eeE-ecCCCcE
Confidence 99999999999973 4444432 22334321 111 1111 11
Q ss_pred EE---EEEEeCCC---CCC---CC-CCCCcEEEEEe--eCCEEEEeeCCCCCCch----HHHHHHHHHHHhc
Q 025812 155 DV---LADYPVPS---NKE---NA-MPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMSEV 210 (247)
Q Consensus 155 ~~---~hs~~~~~---~~~---~~-~~~~~~~~~~~--~~~i~gvQFHPE~s~~~----~i~~nfl~~~~~~ 210 (247)
++ .|++.+.. .+. ++ +..+..+++++ +.+++|+|||||.+..+ .||++|+++++++
T Consensus 305 ~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~ 376 (379)
T 1a9x_B 305 MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQY 376 (379)
T ss_dssp EEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHHH
T ss_pred EEEecCccceEecccCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHHHh
Confidence 21 46665532 110 11 10123466665 56899999999998743 6999999999764
No 23
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.87 E-value=1.8e-22 Score=192.98 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=115.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC---ccCCC--CCCEEEECCCchhHHHHHHhhCCHH-HHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLF-PALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~--~~d~lilpGG~~~~~~~l~~~~~~~-~~i~~~~~~g~P 73 (247)
+||+||+|.+++. ++.++|+++|+.+++++. .+++. ++|+||||||+.+.++.- ...+. ..++.+.+.++|
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~--~~~~~~~l~~~a~~~g~P 85 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAG--SPHLKKEVFEYFLEKKIP 85 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTT--CCCCCHHHHHHHHHTTCC
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccC--CcchhHHHHHHhhhcCCC
Confidence 3799999976665 899999999999888753 33444 689999999865432210 11223 344445667999
Q ss_pred EEEEehhHHHHHHhhhcccCC-CcccccceeeEEEeecc---CCccccccccccCCcccc--cCCCCcceeeeeecCcee
Q 025812 74 VWGTCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNFF---GSQIQSFEAELSVPALAS--QEGGPETFRGVFIRAPAV 147 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g-~~~~LG~l~g~v~~~~~---g~~~~~~~~~~~v~~~Gw--~~~~~~~~~~~~~~~~l~ 147 (247)
+||||+|||+|+.+++..+.. .....|..+..+..... ...+..+.. ..++++| +.+.. ...+++|
T Consensus 86 vLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~--~~~~mg~~~n~~~~------~~~~~Lf 157 (556)
T 3uow_A 86 IFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGD--SSSAMDLYSNYKLM------NETCCLF 157 (556)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC-----CCHHHHHTTSCCC------C--CGGG
T ss_pred EEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccc--cccccccccccccc------cccchhh
Confidence 999999999999997432110 01223322222211100 000000111 1267888 33221 1246788
Q ss_pred eec-CCC--eEEEEEEeCC--CCCC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHH
Q 025812 148 LDV-GPD--VDVLADYPVP--SNKE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 148 ~~l-~~~--~~~~hs~~~~--~~~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
.++ ++. +++.|++.+. +... .+......+++++ ++++||+|||||++.++ .|++||+.
T Consensus 158 ~gl~~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~ 227 (556)
T 3uow_A 158 ENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAY 227 (556)
T ss_dssp TTCCSSEEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHT
T ss_pred cccccCceEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHH
Confidence 887 554 4567777652 2211 1111223556665 47999999999999874 69999993
No 24
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.86 E-value=4.9e-22 Score=192.50 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=113.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc--CCCCCCEEEECCCchhH----HHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD--QLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~--~l~~~d~lilpGG~~~~----~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|+|+|+++.++|. ++.++|++.|+++++++... ++.++|+|||+||+.+. ..++. .+.+.|+++++.++|
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i~---~~~~lI~~a~~~~iP 523 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA---RLYAWLRHLIDEGKP 523 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHHH---HHHHHHHHHHHHTCC
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhHH---HHHHHHHHHHHCCCC
Confidence 5899999877766 78899999999998876543 45689999998874321 12332 246788888889999
Q ss_pred EEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC
Q 025812 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (247)
Q Consensus 74 ilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~ 153 (247)
+||||+|||+|+.+++ ++|.+. +.+++||+... . ...++++.+++..
T Consensus 524 iLGIClG~QlLa~alG--------------G~V~~~-------------~~~~~G~~~~i----~--~~~~~l~~~~~~~ 570 (645)
T 3r75_A 524 FMAVCLSHQILNAILG--------------IPLVRR-------------EVPNQGIQVEI----D--LFGQRERVGFYNT 570 (645)
T ss_dssp EEEETHHHHHHHHHTT--------------CCEEEE-------------EEEEEEEEEEE----E--ETTEEEEEEEEEE
T ss_pred EEEECHHHHHHHHHhC--------------CEEEcC-------------CCcccccceEE----e--eecCcceecCCCc
Confidence 9999999999999973 344442 12334443210 0 0123344333222
Q ss_pred eEE--EEEEeC--CCCCC--CCCCCCcEEEEEeeCCEEEEeeCCCCCCch---HHHHHHHHHHHhccc
Q 025812 154 VDV--LADYPV--PSNKE--NAMPEKKVIVAVRQGNLLGTAFHPELTADT---RWHSYFLKMMSEVGE 212 (247)
Q Consensus 154 ~~~--~hs~~~--~~~~~--~~~~~~~~~~~~~~~~i~gvQFHPE~s~~~---~i~~nfl~~~~~~~~ 212 (247)
+.+ +|...+ .+... ++......+++++.++++|+|||||++.++ .|++||++.+...+.
T Consensus 571 ~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~~~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~~ 638 (645)
T 3r75_A 571 YVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 638 (645)
T ss_dssp EEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEETTEEEESSBTTSTTCTTHHHHHHHHHHHHTTTTC
T ss_pred EEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcCCEEEEEeCCeecCCcchHHHHHHHHHHHHhccc
Confidence 222 111111 01110 112223578899999999999999987653 699999999875443
No 25
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.86 E-value=2.1e-22 Score=190.58 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=109.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECC---ccCCC--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
.|+||++.+++. ++.++|+++|+.+++++. ++++. ++|+||||||+.+.++... ..+. +++++.++|+|
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~--~~~~---~~~~~~~~PvL 75 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA--PRPD---PRLFSSGLPLL 75 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTC--CCCC---GGGGCSSCCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCC--cchH---HHHHhCCCCEE
Confidence 099999987666 788999999998887743 23444 3599999999765432210 1122 33446799999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCC--
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~-- 153 (247)
|||+|||+|+.+++ +++.+. ..+++||+.+.. ..+++|+++++.
T Consensus 76 GIC~G~Qlla~~~G--------------G~v~~~-------------~~~e~G~~~v~~-------~~~~l~~~~~~~~~ 121 (503)
T 2ywb_A 76 GICYGMQLLAQELG--------------GRVERA-------------GRAEYGKALLTR-------HEGPLFRGLEGEVQ 121 (503)
T ss_dssp EETHHHHHHHHTTT--------------CEEECC----------------CEEEEECSE-------ECSGGGTTCCSCCE
T ss_pred EECHHHHHHHHHhC--------------CeEeeC-------------CCCccceEEEEe-------cCcHHhhcCCCccE
Confidence 99999999999862 455442 124677765432 125677776543
Q ss_pred eEEEEEEeCC--CCC----CCCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHHHHH
Q 025812 154 VDVLADYPVP--SNK----ENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMS 208 (247)
Q Consensus 154 ~~~~hs~~~~--~~~----~~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~~~~ 208 (247)
+++.|++.+. ++. +++++ ..+++++ +++++|+|||||++.++ .+++||++.|.
T Consensus 122 v~~~H~~~v~~lp~g~~v~A~s~~--~~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 122 VWMSHQDAVTAPPPGWRVVAETEE--NPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAG 185 (503)
T ss_dssp EEEECSCEEEECCTTCEEEEECSS--CSCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTT
T ss_pred EEEECCCccccCCCCCEEEEEECC--CCEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhh
Confidence 4455665542 121 12223 2344544 57899999999998864 79999997764
No 26
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.86 E-value=9.8e-23 Score=193.72 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=107.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC---ccCCC--CCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~--~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
++|+||++.+++. ++.++|+++|+.+++++. ++++. ++|+||||||+.+.++... ..+. +.+++.++|+
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~--~~~~---~~~~~~g~Pv 82 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS--PRAP---QYVFEAGVPV 82 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC--CCCC---GGGGTSSSCE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCC--cchH---HHHHHCCCCE
Confidence 3799999988776 678999999999888743 23443 4599999999765433211 1222 3344679999
Q ss_pred EEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCC--
Q 025812 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~-- 152 (247)
||||+|||+|+.+++ ++|.+. ..+++||+.+... .++++|+++++
T Consensus 83 LGIC~G~Qlla~~~G--------------G~V~~~-------------~~~e~G~~~v~~~------~~~~L~~~l~~~~ 129 (525)
T 1gpm_A 83 FGVCYGMQTMAMQLG--------------GHVEAS-------------NEREFGYAQVEVV------NDSALVRGIEDAL 129 (525)
T ss_dssp EEETHHHHHHHHHHT--------------CEEECC-------------SSCEEEEEEEEEC------SCCTTTTTCCSEE
T ss_pred EEEChHHHHHHHHcC--------------CEEEeC-------------CCcccceEEEEeC------CCCHhhccCcccc
Confidence 999999999999973 455442 1245666543210 13466666544
Q ss_pred ------C--eEEEEEEeCC--CCC----CCCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHHH
Q 025812 153 ------D--VDVLADYPVP--SNK----ENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 205 (247)
Q Consensus 153 ------~--~~~~hs~~~~--~~~----~~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl~ 205 (247)
. +++.|++.+. ++. +++++ ..+++++ +++++|+|||||++.++ .+++||+.
T Consensus 130 ~~~~~~~~~v~~~H~~~V~~lp~g~~v~A~s~~--~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~ 199 (525)
T 1gpm_A 130 TADGKPLLDVWMSHGDKVTAIPSDFITVASTES--CPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVR 199 (525)
T ss_dssp CTTSCEEEEEEEEECSEEEECCTTCEEEEECSS--CSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHH
T ss_pred ccccccceEEEEEccceeeeCCCCCEEEEECCC--CCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHH
Confidence 2 3445665542 111 12333 2234554 57999999999998864 69999994
No 27
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.85 E-value=7.2e-22 Score=173.34 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=118.0
Q ss_pred EEEEE-ec----CCChHHHHHHHHhCC----CeEEEECCc-------------cCCCCCCEEEECCCchhHHHHHHhhCC
Q 025812 2 VVGVL-AL----QGSFNEHIAALKRLG----VKGVEIRKP-------------DQLQNVSSLIIPGGESTTMARLAEYHN 59 (247)
Q Consensus 2 ~I~vl-~~----~G~~~~~~~~L~~~G----~~v~~~~~~-------------~~l~~~d~lilpGG~~~~~~~l~~~~~ 59 (247)
||||+ ++ .+|+.++.++|+.+| +++.++... +++.++|+||||||+.+. .+. +
T Consensus 10 ~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~--~~~---~ 84 (273)
T 2w7t_A 10 RIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR--GVD---G 84 (273)
T ss_dssp EEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT--THH---H
T ss_pred EEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc--Cch---h
Confidence 79999 66 789999988887765 445554321 124589999999996542 111 2
Q ss_pred HHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCC----C---------cccccceeeEEEeeccCCccccccccccCCc
Q 025812 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLG----G---------QELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g----~---------~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~ 126 (247)
..+.++.+++.++|+||||+|||+|+.+++....+ . .+.+++++..+.+ +. ...+
T Consensus 85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~---------~~---~~~~ 152 (273)
T 2w7t_A 85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNK---------MG---ANMH 152 (273)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCS---------SC---BCCE
T ss_pred HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccc---------cC---Cccc
Confidence 46778888888999999999999999987542210 0 0111111110000 00 0115
Q ss_pred ccccCCCCcceeeeeecCceeeecCC--CeEE--EEEEeCCCC-------C-----CCCCCC---CcEEEEEeeC---CE
Q 025812 127 LASQEGGPETFRGVFIRAPAVLDVGP--DVDV--LADYPVPSN-------K-----ENAMPE---KKVIVAVRQG---NL 184 (247)
Q Consensus 127 ~Gw~~~~~~~~~~~~~~~~l~~~l~~--~~~~--~hs~~~~~~-------~-----~~~~~~---~~~~~~~~~~---~i 184 (247)
+||+.+.... .+++++..++. .+++ .|||.+.++ + +++.++ ...+++++.+ ++
T Consensus 153 ~g~~~v~~~~-----~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~ 227 (273)
T 2w7t_A 153 LGACDVYIVE-----KSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFF 227 (273)
T ss_dssp EEEEEEEECC-----TTSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSE
T ss_pred ccceEEEEec-----CCcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeE
Confidence 7887543100 13344433332 3444 356665321 1 123342 1367888755 47
Q ss_pred EEEeeCCCCCCch----HHHHHHHHHHHhcccCccCCCC
Q 025812 185 LGTAFHPELTADT----RWHSYFLKMMSEVGEGTSSGGK 219 (247)
Q Consensus 185 ~gvQFHPE~s~~~----~i~~nfl~~~~~~~~~~~~~~~ 219 (247)
+|+|||||++..+ .||+||++.|++......+..+
T Consensus 228 ~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~~~~~~~~~~ 266 (273)
T 2w7t_A 228 LAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCS 266 (273)
T ss_dssp EEESSCGGGSCBTTBCCHHHHHHHHHHHTCCCCCCSSCC
T ss_pred EEEeCCCCcCCCCCchHHHHHHHHHHHHHHHHhhhhcCc
Confidence 7999999988753 6999999999987666554433
No 28
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.81 E-value=6.9e-20 Score=163.81 Aligned_cols=86 Identities=23% Similarity=0.440 Sum_probs=63.2
Q ss_pred EEEEEecCCCh------------HHHHHHHHhCCCeEEEECCccC-------CCCCCEEEECCCchh----HHHHHHhhC
Q 025812 2 VVGVLALQGSF------------NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST----TMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~G~~------------~~~~~~L~~~G~~v~~~~~~~~-------l~~~d~lilpGG~~~----~~~~l~~~~ 58 (247)
+|||+...+.. .+++++|+++|+++++++...+ ++++|+||||||..+ .+..+. .
T Consensus 32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~--~ 109 (315)
T 1l9x_A 32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVA--K 109 (315)
T ss_dssp EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHH--H
T ss_pred EEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHH--H
Confidence 58999764432 2688999999999999876432 357999999998522 233332 2
Q ss_pred CHHHHHHHHHHcC--CcEEEEehhHHHHHHhhh
Q 025812 59 NLFPALREFVKMG--KPVWGTCAGLIFLANKAV 89 (247)
Q Consensus 59 ~~~~~i~~~~~~g--~PilGIC~G~QlL~~~~~ 89 (247)
.+.+.++++.+++ +|+||||+|||+|+.+++
T Consensus 110 ~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~G 142 (315)
T 1l9x_A 110 IFYNLSIQSFDDGDYFPVWGTCLGFEELSLLIS 142 (315)
T ss_dssp HHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEChHHHHHHHHhC
Confidence 3566777776654 999999999999999984
No 29
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=174.15 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=97.1
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEECCc---cCC--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 2 ~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
+|+||++.+++.. +.++|+++|+.+++++.. +++ .++|+|||+||+.+.++.- ...+. ++.++.++|+|
T Consensus 31 ~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~--~~~~~---~~i~~~g~PvL 105 (697)
T 2vxo_A 31 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED--APWFD---PAIFTIGKPVL 105 (697)
T ss_dssp CEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC---------CCCCC---GGGTTSSCCEE
T ss_pred EEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCcc--chhHH---HHHHhCCCCEE
Confidence 5999999999884 679999999999887653 233 4789999999976544321 11222 23346799999
Q ss_pred EEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCcccccCCCCcceeeeeecCceeeecCCCeE
Q 025812 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (247)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~Gw~~~~~~~~~~~~~~~~l~~~l~~~~~ 155 (247)
|||+|||+|+.+++. ++.+. +.++.||+.+... .++++|+++++...
T Consensus 106 GIC~G~QlLa~~lGG--------------~v~~~-------------~~~e~G~~~v~~~------~~~~Lf~~l~~~~~ 152 (697)
T 2vxo_A 106 GICYGMQMMNKVFGG--------------TVHKK-------------SVREDGVFNISVD------NTCSLFRGLQKEEV 152 (697)
T ss_dssp EEEHHHHHHHHHTTC--------------CBCC--------------------CEEEEEC------TTSGGGTTCCSEEE
T ss_pred EECHHHHHHHHHhCC--------------eEeec-------------CCCccceEEEEec------CCChhhhcCCccCc
Confidence 999999999999732 22221 1224455432210 13455555543333
Q ss_pred --EEEEEeCCCC--CC--CCCCCCcEEEEEe--eCCEEEEeeCCCCCCch---HHHHHHH
Q 025812 156 --VLADYPVPSN--KE--NAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFL 204 (247)
Q Consensus 156 --~~hs~~~~~~--~~--~~~~~~~~~~~~~--~~~i~gvQFHPE~s~~~---~i~~nfl 204 (247)
+.|++.+... .. .+.. ...+++++ +++++|+|||||.+.++ .+++||+
T Consensus 153 v~~~H~~~V~~lp~g~~vlA~s-~~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl 211 (697)
T 2vxo_A 153 VLLTHGDSVDKVADGFKVVARS-GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 211 (697)
T ss_dssp ECCCSSCCBSSCCTTCEEEEEE-TTEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHH
T ss_pred ceeecccceecCCCCeEEEEEe-CCceEEEEeCCCCEEEEEecccCCCCccchhhhhhhh
Confidence 2344443211 11 1111 12667776 67999999999998753 6999999
No 30
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.76 E-value=1.3e-19 Score=160.27 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=63.0
Q ss_pred CEEEEE-ec-CC-C-hHHHHHHHHhCCCe----EEEECC-------------ccC-------CCCCCEEEECCCchhHHH
Q 025812 1 MVVGVL-AL-QG-S-FNEHIAALKRLGVK----GVEIRK-------------PDQ-------LQNVSSLIIPGGESTTMA 52 (247)
Q Consensus 1 m~I~vl-~~-~G-~-~~~~~~~L~~~G~~----v~~~~~-------------~~~-------l~~~d~lilpGG~~~~~~ 52 (247)
|||+|+ ++ .. + +.++.++|+++|++ +++... +++ +.++|+||||||+.+.
T Consensus 26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~-- 103 (289)
T 2v4u_A 26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIR-- 103 (289)
T ss_dssp EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSST--
T ss_pred eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCch--
Confidence 589999 66 22 3 78999999998753 333221 111 5678999999997542
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhhc
Q 025812 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~ 90 (247)
.+. +..+.|+++++.++|+||||+|+|+|+.+++.
T Consensus 104 ~~~---~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg 138 (289)
T 2v4u_A 104 GTL---GKLQAISWARTKKIPFLGVXLGMQLAVIEFAR 138 (289)
T ss_dssp THH---HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHcCCcEEEECccHHHHHHHHhc
Confidence 221 35678899989999999999999999998854
No 31
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.71 E-value=9.5e-18 Score=159.25 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHh----CCCeEEEEC--Cc--------cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 9 QGSFNEHIAALKR----LGVKGVEIR--KP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 9 ~G~~~~~~~~L~~----~G~~v~~~~--~~--------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
..++.++.++|+. .|+++.++. .. +.+.++|+||||||+.+.. .. +..+.++.+.+.++|+
T Consensus 313 ~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~--~~---g~i~~ir~a~e~~iPi 387 (550)
T 1vco_A 313 PDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG--IE---GKVRAAQYARERKIPY 387 (550)
T ss_dssp -CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT--HH---HHHHHHHHHHHTTCCE
T ss_pred EecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc--hh---hhHHHHHHHHHCCCcE
Confidence 4567666666655 456777652 21 1267899999999975431 11 2367888888899999
Q ss_pred EEEehhHHHHHHhhhc
Q 025812 75 WGTCAGLIFLANKAVG 90 (247)
Q Consensus 75 lGIC~G~QlL~~~~~~ 90 (247)
||||+|||+|+.+++.
T Consensus 388 LGICLGmQlL~~a~Gg 403 (550)
T 1vco_A 388 LGICLGLQIAVIEFAR 403 (550)
T ss_dssp EEETHHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHhCc
Confidence 9999999999999853
No 32
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.60 E-value=7.3e-16 Score=144.63 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=63.4
Q ss_pred EEEEEe----cCCChHHHHHHHHhCC----CeEE--EECCc----------cCCCCCCEEEECCCchhHHHHHHhhCCHH
Q 025812 2 VVGVLA----LQGSFNEHIAALKRLG----VKGV--EIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLF 61 (247)
Q Consensus 2 ~I~vl~----~~G~~~~~~~~L~~~G----~~v~--~~~~~----------~~l~~~d~lilpGG~~~~~~~l~~~~~~~ 61 (247)
+||++. ...+|.|+.++|+.+| +++. ++..+ +++.++|+||+|||+.+. . . .+..
T Consensus 295 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~-~-~---~g~i 369 (535)
T 3nva_A 295 NIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR-G-A---EGKI 369 (535)
T ss_dssp EEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST-T-H---HHHH
T ss_pred EEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc-c-H---HHHH
Confidence 577776 2568999999998876 3444 44332 357889999999987543 1 1 1347
Q ss_pred HHHHHHHHcCCcEEEEehhHHHHHHhhhc
Q 025812 62 PALREFVKMGKPVWGTCAGLIFLANKAVG 90 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC~G~QlL~~~~~~ 90 (247)
+.|+.+.++++|+||||+|||+|+.+++.
T Consensus 370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg 398 (535)
T 3nva_A 370 KAIKYAREHNIPFLGICFGFQLSIVEFAR 398 (535)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEECcchhHHHHHhhc
Confidence 78899999999999999999999999854
No 33
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.57 E-value=1.1e-14 Score=129.17 Aligned_cols=162 Identities=13% Similarity=0.050 Sum_probs=93.4
Q ss_pred CEEEEEecCCChHHH----HHHHHhCCC--eEEEECCc--c-------------------CCCCCCEEEECCCchh----
Q 025812 1 MVVGVLALQGSFNEH----IAALKRLGV--KGVEIRKP--D-------------------QLQNVSSLIIPGGEST---- 49 (247)
Q Consensus 1 m~I~vl~~~G~~~~~----~~~L~~~G~--~v~~~~~~--~-------------------~l~~~d~lilpGG~~~---- 49 (247)
|||+||...-+.... .+.|..... +++.+... + +..++|++|++||..+
T Consensus 36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ 115 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 115 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence 699999986665544 444444443 44444321 0 1367999999998532
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCccc
Q 025812 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128 (247)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~G 128 (247)
..+++.+ +.+.++.+.+.++|+||||+|+|++..++.+.. ... ..-+..|
T Consensus 116 ed~~yw~e---l~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~-------------k~~-------------~~~K~~G 166 (301)
T 2vdj_A 116 EEVDYWEE---LKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQ-------------KYP-------------LKEKMFG 166 (301)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC-------------CEE-------------EEEEEEE
T ss_pred ccCchHHH---HHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCc-------------ccc-------------CCCCEEE
Confidence 2233432 356666666789999999999999777663211 000 0111233
Q ss_pred ccCCCCcceeeeeecCceeeecCCCeEEEEEEe---C----CC-CCCC---CCCCCcEEEEEe-eCCEEEEeeCCCCCCc
Q 025812 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP---V----PS-NKEN---AMPEKKVIVAVR-QGNLLGTAFHPELTAD 196 (247)
Q Consensus 129 w~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~---~----~~-~~~~---~~~~~~~~~~~~-~~~i~gvQFHPE~s~~ 196 (247)
|...+. . -.++|++.++++.+.+.||++ + +. ..+. .+..|+..+... .++++++|||||++.+
T Consensus 167 v~~~~~---~--~~~~pL~~g~~~~f~~phsr~~~~~~~~v~~~pga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 167 VFEHEV---R--EQHVKLLQGFDELFFAVHSRHTEVRESDIREVKELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp EEEEEE---C--CSSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTT
T ss_pred EEEEEe---c--CCCCccccCCCCceEeeeEeccCcCHHHccCCCCCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 322110 0 024667766666777778754 1 11 1111 223345444433 5689999999999886
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.57 E-value=1.7e-14 Score=128.33 Aligned_cols=171 Identities=11% Similarity=-0.048 Sum_probs=98.3
Q ss_pred CEEEEEecCCChHH----HHHHHHhCCC--eEEEECCc-------------------c--CCCCCCEEEECCCch-----
Q 025812 1 MVVGVLALQGSFNE----HIAALKRLGV--KGVEIRKP-------------------D--QLQNVSSLIIPGGES----- 48 (247)
Q Consensus 1 m~I~vl~~~G~~~~----~~~~L~~~G~--~v~~~~~~-------------------~--~l~~~d~lilpGG~~----- 48 (247)
||||||...-+... +.+.|..... +++.+... . +..++|++|++||..
T Consensus 48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ 127 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF 127 (312)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence 69999998665553 4555555554 44444321 1 136799999999853
Q ss_pred hHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhhhcccCCCcccccceeeEEEeeccCCccccccccccCCccc
Q 025812 49 TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128 (247)
Q Consensus 49 ~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~~~~~~g~~~~LG~l~g~v~~~~~g~~~~~~~~~~~v~~~G 128 (247)
+..+++.+ +.+.++.+.+.++|+||||+|+|+++.++.+.. ... ..-+..|
T Consensus 128 ed~~yw~e---l~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~-------------k~~-------------~~~K~~G 178 (312)
T 2h2w_A 128 EEVDYWEE---LTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIP-------------KYE-------------LPQKLSG 178 (312)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC-------------CEE-------------EEEEEEE
T ss_pred ccCchHHH---HHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCc-------------ccc-------------CCCCEEE
Confidence 22233332 355666666789999999999999777763211 000 0112334
Q ss_pred ccCCCCcceeeeeecCceeeecCCCeEEEEEEeC-------CC-CCCC---CCCCCcEEEEEe-eCCEEEEeeCCCCCCc
Q 025812 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPV-------PS-NKEN---AMPEKKVIVAVR-QGNLLGTAFHPELTAD 196 (247)
Q Consensus 129 w~~~~~~~~~~~~~~~~l~~~l~~~~~~~hs~~~-------~~-~~~~---~~~~~~~~~~~~-~~~i~gvQFHPE~s~~ 196 (247)
|..... ...+|++.++++.+.+.||++. +. ..+. .+..|+..+... .++++++|||||++.+
T Consensus 179 v~~~~~------~~~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 179 VYKHRV------AKDSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEILAESDEAGVYVVANKSERQIFVTGHPEYDRY 252 (312)
T ss_dssp EEEEEE------SSCCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTT
T ss_pred EEEEEE------cCCCccccCCCCceEeeEEeccccCHHHccCCCCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 332110 0146677666677778887541 11 1121 223345444433 5689999999999886
Q ss_pred hHHHHHHHHHH
Q 025812 197 TRWHSYFLKMM 207 (247)
Q Consensus 197 ~~i~~nfl~~~ 207 (247)
. +.+.+.+.+
T Consensus 253 ~-l~~ey~rd~ 262 (312)
T 2h2w_A 253 T-LRDEYYRDI 262 (312)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 3 333444333
No 35
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.56 E-value=3.1e-15 Score=141.85 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHhCCCe----EEEECCc---------cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 9 QGSFNEHIAALKRLGVK----GVEIRKP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 9 ~G~~~~~~~~L~~~G~~----v~~~~~~---------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
..++.++.++|+.+|++ +.+.... +.+.++|+||+|||+.+.. .. +..+.++.+.+.++|+|
T Consensus 302 ~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~--~~---g~~~~i~~a~~~~~PiL 376 (545)
T 1s1m_A 302 PDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG--VE---GMITTARFARENNIPYL 376 (545)
T ss_dssp GGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT--HH---HHHHHHHHHHHTTCCEE
T ss_pred EEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc--ch---hhHHHHHHHHHCCCcEE
Confidence 34788999999998863 3433221 2367899999999875431 11 24678888888899999
Q ss_pred EEehhHHHHHHhhhc
Q 025812 76 GTCAGLIFLANKAVG 90 (247)
Q Consensus 76 GIC~G~QlL~~~~~~ 90 (247)
|||+|||+|+.+++.
T Consensus 377 GIClG~Qll~va~Gg 391 (545)
T 1s1m_A 377 GICLGMQVALIDYAR 391 (545)
T ss_dssp EETHHHHHHHHHHHH
T ss_pred EECChHHHHHHHhCC
Confidence 999999999998753
No 36
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=99.48 E-value=3.2e-14 Score=121.51 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=86.6
Q ss_pred EEEEEecC-------CChHHHHHHHHhCCCeEEEECC---c-cCCCCCCEEEECCCch-hHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQ-------GSFNEHIAALKRLGVKGVEIRK---P-DQLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~-------G~~~~~~~~L~~~G~~v~~~~~---~-~~l~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~~~~~ 69 (247)
||+|+.+. ++..++.++|+++|++++.++. + +++.++|+|++|||.. ..+..|++ .++.+.|+++++
T Consensus 33 ~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~-~gl~~~l~~~~~ 111 (229)
T 1fy2_A 33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRE-RGLLAPMADRVK 111 (229)
T ss_dssp EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHH-CChHHHHHHHHH
Confidence 79999875 5677899999999999988853 2 4578899999999965 44566654 789999999999
Q ss_pred cCCcEEEEehhHHHHHHhhhccc------CCCcccccceeeEEEee
Q 025812 70 MGKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVHRN 109 (247)
Q Consensus 70 ~g~PilGIC~G~QlL~~~~~~~~------~g~~~~LG~l~g~v~~~ 109 (247)
+|+|++|+|+|+|+|+..+++.. .+..++||++++.+.++
T Consensus 112 ~G~p~~G~sAG~~~l~~~~~~~~d~~~~~~~~~~gLgli~~~v~~H 157 (229)
T 1fy2_A 112 RGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPH 157 (229)
T ss_dssp TTCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEECS
T ss_pred cCCEEEEECHHHHhhcccceecCCCCcccCCcCCcCCCCCceecCC
Confidence 99999999999999999875420 02367899999988775
No 37
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.41 E-value=9.1e-13 Score=135.49 Aligned_cols=86 Identities=27% Similarity=0.364 Sum_probs=66.0
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEEC------CccCCCCCCEEEECCCch--hHH--------HHHHhhCCHHH
Q 025812 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGES--TTM--------ARLAEYHNLFP 62 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~------~~~~l~~~d~lilpGG~~--~~~--------~~l~~~~~~~~ 62 (247)
+||+||+++|..+ ++.++|+++|++++++. .+++++++|+||+|||+. +.+ ..+ .+..+.+
T Consensus 1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l-~~~~l~~ 1126 (1303)
T 3ugj_A 1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSIL-FNHRVRD 1126 (1303)
T ss_dssp CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHH-TSHHHHH
T ss_pred CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHH-hchhHHH
Confidence 5899999987554 88999999999988653 456788999999999842 211 122 2224566
Q ss_pred HHHHHH-HcCCcEEEEehhHHHHHHh
Q 025812 63 ALREFV-KMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 63 ~i~~~~-~~g~PilGIC~G~QlL~~~ 87 (247)
.|++++ ++++|+||||.|+|+|++.
T Consensus 1127 ~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1127 EFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 788866 4799999999999999986
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=1.2e-12 Score=110.18 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=83.0
Q ss_pred EEEEEec-CC------ChHHHHHHHHhCCCeEEEEC----Cc----cCCCCCCEEEECCCch-hHHHHHHhhCCHHHHHH
Q 025812 2 VVGVLAL-QG------SFNEHIAALKRLGVKGVEIR----KP----DQLQNVSSLIIPGGES-TTMARLAEYHNLFPALR 65 (247)
Q Consensus 2 ~I~vl~~-~G------~~~~~~~~L~~~G~~v~~~~----~~----~~l~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~ 65 (247)
||+++.+ .| ++.++.++|+++|+++++++ ++ +.+.++|+|++|||.. ..+..|++ .++.+.|+
T Consensus 29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~-~gl~~~l~ 107 (206)
T 3l4e_A 29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKR-TGADKLIL 107 (206)
T ss_dssp EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHH-HTHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHH-CChHHHHH
Confidence 6888875 22 45689999999999998884 44 3467899999999854 44666764 68999999
Q ss_pred HHHHcCCcEEEEehhHHHHHHhhhcc----------cCCCcccccceeeEEEee
Q 025812 66 EFVKMGKPVWGTCAGLIFLANKAVGQ----------KLGGQELVGGLDCTVHRN 109 (247)
Q Consensus 66 ~~~~~g~PilGIC~G~QlL~~~~~~~----------~~g~~~~LG~l~g~v~~~ 109 (247)
+++++|+|++|+|+|+|+|+..+... .....++||+++..+..+
T Consensus 108 ~~~~~G~p~~G~sAGa~~l~~~i~~~~~~~~~~~~~~~~~~~GLGlv~~~i~pH 161 (206)
T 3l4e_A 108 EEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPH 161 (206)
T ss_dssp HHHHTTCEEEEETHHHHTTSSBCGGGTTTSCGGGCSSCCCCBCCCCSSSEEETT
T ss_pred HHHHcCCeEEEECHHHHHhcccceeccCCCCccccCCCCcCCcccCCCCEeECC
Confidence 99999999999999999999865311 112357899999887654
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.05 E-value=4.9e-10 Score=92.70 Aligned_cols=85 Identities=26% Similarity=0.457 Sum_probs=66.1
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCcc----------------------CCCCCCEEEECCCchhHHHHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARL 54 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~----------------------~l~~~d~lilpGG~~~~~~~l 54 (247)
|||+||.++|. +....+.|++.|+++.+++... +..++|.||+|||.. ...+
T Consensus 24 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~--~~~l 101 (193)
T 1oi4_A 24 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS--PDYL 101 (193)
T ss_dssp CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH--HHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC--HHHh
Confidence 48999999873 4467899999999988775321 124689999999953 2333
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 323346889999999999999999999999987
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.98 E-value=1.4e-09 Score=87.58 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=66.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+||.++|- +....+.|++.|+++.+++.. +++ .++|.||+|||... ..+..
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~ 80 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP--EIVRL 80 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH--HHHTT
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH--HHhcc
Confidence 79999999883 446778999999998876532 122 25999999998642 23333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 81 NEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 3456889999999999999999999999986
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.80 E-value=1.4e-08 Score=83.94 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=66.6
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc-------------------cCC---CCCCEEEECCCchhHHHHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL---QNVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-------------------~~l---~~~d~lilpGG~~~~~~~l~ 55 (247)
||+||.++|. +....+.|++.|+++.+++.. +++ .++|.||+|||.... ..+.
T Consensus 5 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~-~~l~ 83 (197)
T 2rk3_A 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNLS 83 (197)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHH-HHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhH-HHhh
Confidence 8999999883 446778999999998876521 123 678999999996422 2233
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+.++|+++.++++++.+||.|.++|+++
T Consensus 84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 84 ESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 33457889999999999999999999999987
No 42
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.77 E-value=2.1e-08 Score=83.54 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=65.5
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCcc---------------------C--CCCCCEEEECCCchhHHHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD---------------------Q--LQNVSSLIIPGGESTTMARL 54 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~---------------------~--l~~~d~lilpGG~~~~~~~l 54 (247)
||+||.++|. +....+.|++.|+++.+++... + ..++|.||+|||.... ..+
T Consensus 4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~-~~l 82 (205)
T 2ab0_A 4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-ECF 82 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HHH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccH-HHh
Confidence 8999999885 4456789999999988765311 1 2579999999996432 223
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehhH-HHHHHh
Q 025812 55 AEYHNLFPALREFVKMGKPVWGTCAGL-IFLANK 87 (247)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PilGIC~G~-QlL~~~ 87 (247)
..+..+.++|+++.++++|+.+||.|. ++|+.+
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 333457889999999999999999999 999975
No 43
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.77 E-value=3.4e-08 Score=81.16 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=65.6
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCcc-------------------CC--CCCCEEEECCCchhHHHHHHh
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD-------------------QL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~-------------------~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
||+||.++|. +....+.|++.|+++.+++... ++ .++|.||+|||.+.. ..+..
T Consensus 7 kv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~ 85 (190)
T 4e08_A 7 SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGS-NAMGE 85 (190)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHH-HHHHH
T ss_pred EEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHH-HHhhh
Confidence 7999999884 3456799999999998875321 12 368999999996422 23333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++++.+||.|.++|+++
T Consensus 86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 3457889999999999999999999999986
No 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.76 E-value=1.6e-08 Score=82.83 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=64.4
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc-----------------------cCC--CCCCEEEECCCchhHH
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-----------------------DQL--QNVSSLIIPGGESTTM 51 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-----------------------~~l--~~~d~lilpGG~~~~~ 51 (247)
|||+||.++|. +....+.|++.|+++.+++.. +++ .++|.||+|||....
T Consensus 10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~- 88 (190)
T 2vrn_A 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP- 88 (190)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH-
Confidence 48999999885 445678999999988765421 122 468999999996322
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 52 ~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 223223346889999999999999999999999987
No 45
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.73 E-value=4.8e-08 Score=80.09 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=66.2
Q ss_pred EEEEEecCC----ChHHHHHHHHh-CCCeEEEECCc------------------cCCC--CCCEEEECCCchhHHHHHHh
Q 025812 2 VVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 2 ~I~vl~~~G----~~~~~~~~L~~-~G~~v~~~~~~------------------~~l~--~~d~lilpGG~~~~~~~l~~ 56 (247)
||+||.++| .+....+.|++ .|+++.+++.. +++. ++|.||+|||.... +..
T Consensus 3 ~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~---~~~ 79 (188)
T 2fex_A 3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE---KGT 79 (188)
T ss_dssp EEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH---HTC
T ss_pred EEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc---ccc
Confidence 899999887 45677889999 99998876531 1233 79999999997422 223
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++++.+||.|.++|+++
T Consensus 80 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 80 AADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 4568899999999999999999999999987
No 46
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.72 E-value=1e-08 Score=83.94 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=62.6
Q ss_pred EEEEecCC----ChHHHHHHHHhCCCeEEEECCc------------------cC--CCCCCEEEECCCchhHHHHHHhhC
Q 025812 3 VGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAEYH 58 (247)
Q Consensus 3 I~vl~~~G----~~~~~~~~L~~~G~~v~~~~~~------------------~~--l~~~d~lilpGG~~~~~~~l~~~~ 58 (247)
|.||..+| .+....+.|++.|+++++++.. ++ ..+||+||+|||... ..+..+.
T Consensus 11 v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~--~~l~~~~ 88 (177)
T 4hcj_A 11 LYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGC--ITLWDDW 88 (177)
T ss_dssp EEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGG--GGGTTCH
T ss_pred EEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccH--HHHhhCH
Confidence 56776555 3446779999999999887532 12 357899999999642 1232333
Q ss_pred CHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 59 NLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 59 ~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+.++|+++.++++|+.+||.|.++|+++
T Consensus 89 ~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 89 RTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp HHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 46789999999999999999999999987
No 47
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.66 E-value=3.6e-08 Score=82.54 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=62.2
Q ss_pred EEEEEecCCC----hHHHHHHHHhCC-------CeEEEECCc------------------cCCCCCCEEEECCCchhHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMA 52 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G-------~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~ 52 (247)
||+||.++|- +....+.|+..+ +++.+++.. ++++++|.||+|||......
T Consensus 10 ~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~ 89 (209)
T 3er6_A 10 RVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLES 89 (209)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCCchhh
Confidence 7999999883 445667777653 677666431 13467999999998632211
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 90 ~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 90 LDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 12222346889999999999999999999999987
No 48
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.58 E-value=1e-07 Score=79.87 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=63.4
Q ss_pred EEEEEecCC----ChHHHHHHHH--------hCCCeEEEECCc------------------cCCC--CCCEEEECCCchh
Q 025812 2 VVGVLALQG----SFNEHIAALK--------RLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGEST 49 (247)
Q Consensus 2 ~I~vl~~~G----~~~~~~~~L~--------~~G~~v~~~~~~------------------~~l~--~~d~lilpGG~~~ 49 (247)
||+||.++| .+....+.|+ +.++++.+++.. +++. ++|.||+|||...
T Consensus 7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~ 86 (212)
T 3efe_A 7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW 86 (212)
T ss_dssp CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence 699999987 4567888998 678888776431 1233 7999999998532
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 50 ~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.. ..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 87 ~~---~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 87 SE---EIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TS---GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cc---ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 11 122346789999999999999999999999987
No 49
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.57 E-value=1e-07 Score=79.59 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=65.4
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc-------------------cCC--CCCCEEEECCCchhHHHHHHh
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-------------------~~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
||+||.++|. +....+.|++.|+++.+++.. +++ .++|.||+|||.... ..+..
T Consensus 11 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~l~~ 89 (208)
T 3ot1_A 11 RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGA-QAFAD 89 (208)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHH-HHHHT
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHH-HHHhh
Confidence 8999999884 446778999999998876532 122 368999999996422 23333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhH-HHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGL-IFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~-QlL~~~ 87 (247)
+..+.++|+++.++++++.+||.|. .+|+++
T Consensus 90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 90 STALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 3457889999999999999999999 888875
No 50
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=98.57 E-value=7e-08 Score=80.92 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=63.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHhC--CCeEEEECCc------------------cCCCCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAALKRL--GVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~--G~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+||.++|- +....+.|++. ++++.+++.. ++...+|.||+|||... ..+..
T Consensus 5 ~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~~--~~~~~ 82 (211)
T 3mgk_A 5 YRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGT--REKVN 82 (211)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTHH--HHHTT
T ss_pred eEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcch--hhhcC
Confidence 48999999984 34567888887 4777766532 12345899999999642 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++++.+||.|..+|+++
T Consensus 83 ~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 83 DDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp CHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 3356889999999999999999999999987
No 51
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.54 E-value=1.3e-07 Score=80.35 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=64.1
Q ss_pred EEEEEecCCC----hHHHHHHHHh-CCCeEEEECCc------------------cCCCCCCEEEECCCchhHHHHHHhhC
Q 025812 2 VVGVLALQGS----FNEHIAALKR-LGVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~-~G~~v~~~~~~------------------~~l~~~d~lilpGG~~~~~~~l~~~~ 58 (247)
||+||.++|- +....+.|++ .|+++.+++.. +++.++|.||+|||... ..+..+.
T Consensus 7 ~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~--~~~~~~~ 84 (231)
T 3noq_A 7 QIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV--GALMEDP 84 (231)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH--HHHTTCH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh--hhhccCH
Confidence 7999999984 4456788888 68887766431 23467999999998532 2232333
Q ss_pred CHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 59 NLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 59 ~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+.++|+++.++++++.+||.|..+|+.+
T Consensus 85 ~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 85 QALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 56889999999999999999999999987
No 52
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.51 E-value=1.9e-07 Score=78.12 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=63.1
Q ss_pred EEEEEecCC----ChHHHHHHHHhC-CCeEEEECCc-----------------cCCC-CCCEEEECCCchhHHHHHHhhC
Q 025812 2 VVGVLALQG----SFNEHIAALKRL-GVKGVEIRKP-----------------DQLQ-NVSSLIIPGGESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~G----~~~~~~~~L~~~-G~~v~~~~~~-----------------~~l~-~~d~lilpGG~~~~~~~l~~~~ 58 (247)
||+||.++| .+....+.|++. |+++.+++.. +++. ++|.||+|||..... .+.
T Consensus 5 kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~----~~~ 80 (206)
T 3f5d_A 5 KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN----DNK 80 (206)
T ss_dssp EEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC----CCH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh----cCH
Confidence 799999987 355778899988 8888776431 1233 789999999853211 223
Q ss_pred CHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 59 NLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 59 ~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+.++|+++.++++++.+||.|.++|+++
T Consensus 81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 46789999999999999999999999987
No 53
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.49 E-value=1.1e-07 Score=76.92 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=60.0
Q ss_pred CEEEEEecC---C-ChHHHHHHHHhCCCeEEEECCc-------------------cCC----CCCCEEEECCC--chhH-
Q 025812 1 MVVGVLALQ---G-SFNEHIAALKRLGVKGVEIRKP-------------------DQL----QNVSSLIIPGG--ESTT- 50 (247)
Q Consensus 1 m~I~vl~~~---G-~~~~~~~~L~~~G~~v~~~~~~-------------------~~l----~~~d~lilpGG--~~~~- 50 (247)
|||+||.++ | .+.+..+.+.+.|+++.+++.. +++ .++|.||+||| .+..
T Consensus 3 ~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~ 82 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQ 82 (175)
T ss_dssp CEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGG
T ss_pred cEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHH
Confidence 489999988 5 1122334443789988876432 123 56899999999 5221
Q ss_pred -HHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 51 -MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 51 -~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+.....+..+.++|+++.++++++.+||.|.++|+++
T Consensus 83 ~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 83 QYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 1100012346889999999999999999999999987
No 54
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.47 E-value=3.5e-07 Score=83.34 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=66.1
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCcc----------------------------------C--CCCCCEE
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------------------Q--LQNVSSL 41 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~----------------------------------~--l~~~d~l 41 (247)
||+||.++|. +....+.|++.|+++.+++... + ..++|.|
T Consensus 14 kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 93 (396)
T 3uk7_A 14 TVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGL 93 (396)
T ss_dssp EEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEE
Confidence 7999999883 4467899999999998875321 1 2468999
Q ss_pred EECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 42 ilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
|+|||... ..+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 94 ivpGG~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 94 VIPGGRAP--EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EECCCcch--hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 99999642 234333456889999999999999999999999987
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.46 E-value=3.5e-07 Score=83.36 Aligned_cols=84 Identities=25% Similarity=0.365 Sum_probs=65.9
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc----------------------------------cC--CCCCCEE
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQ--LQNVSSL 41 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~----------------------------------~~--l~~~d~l 41 (247)
||+||.++|. +....+.|++.|+++.+++.. ++ ..++|.|
T Consensus 207 ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 286 (396)
T 3uk7_A 207 RILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDAL 286 (396)
T ss_dssp EEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEE
T ss_pred eEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEE
Confidence 7999999884 446788999999999887531 01 2368999
Q ss_pred EECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 42 ilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
|+|||... ..+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 287 ivpGg~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 287 VIPGGRAP--EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp EECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred EECCCcch--hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 99999642 233333456889999999999999999999999987
No 56
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.45 E-value=4e-07 Score=78.08 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=63.5
Q ss_pred EEEEEec-----CCC----hHHHHHHHHhCCCeEEEECCc------------------------------------cCC-
Q 025812 2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP------------------------------------DQL- 35 (247)
Q Consensus 2 ~I~vl~~-----~G~----~~~~~~~L~~~G~~v~~~~~~------------------------------------~~l- 35 (247)
||+||.. +|. +....+.|++.|+++.+++.. +++
T Consensus 25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~ 104 (242)
T 3l3b_A 25 NSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIR 104 (242)
T ss_dssp EEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCC
T ss_pred EEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCC
Confidence 7999986 774 335678999999998876421 111
Q ss_pred -CCCCEEEECCCchhHHHHH-----------HhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 -QNVSSLIIPGGESTTMARL-----------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 -~~~d~lilpGG~~~~~~~l-----------~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.++|+||+|||.... ..| ..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 105 ~~~~D~livPGG~~~~-~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~a 167 (242)
T 3l3b_A 105 VEEFDMLVIPGGYGVA-KNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVAL 167 (242)
T ss_dssp GGGCSEEEECCCHHHH-HHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHH
T ss_pred cccCCEEEEcCCcchh-hhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 368999999997532 112 112246789999999999999999999999987
No 57
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.40 E-value=6.4e-07 Score=77.26 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=63.1
Q ss_pred CEEEEEecCCC----hHHHHHHH-HhCCCeEEEECCc------------------cCC-CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAAL-KRLGVKGVEIRKP------------------DQL-QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L-~~~G~~v~~~~~~------------------~~l-~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+||.++|- +....+.| +..|+++.+++.. +++ ..+|.||+|||.... ..+..
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~-~~l~~ 102 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGT-LAAAS 102 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHH-HHHTT
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccch-hhhcc
Confidence 48999999983 34567788 5568888876431 122 246999999997221 23333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 103 ~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 103 DAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3456889999999999999999999999987
No 58
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.38 E-value=3.9e-07 Score=75.75 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=61.0
Q ss_pred EEEEEecCCC----hHHHHHHHHhCC------CeEEEECCc-----------------cC--CCCCCEEEECCCchhHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLG------VKGVEIRKP-----------------DQ--LQNVSSLIIPGGESTTMA 52 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G------~~v~~~~~~-----------------~~--l~~~d~lilpGG~~~~~~ 52 (247)
||+||.++|- +....+.|+..+ +++.+++.. ++ ..++|.||+|||......
T Consensus 7 ~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~~~ 86 (202)
T 3gra_A 7 RVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTPLK 86 (202)
T ss_dssp EEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCCSC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchhhc
Confidence 7999999983 335567777764 666665421 12 457999999998542211
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
. ..+.++|+++.++++++.+||.|..+|+++
T Consensus 87 ---~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 87 ---Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp ---C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred ---c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 1 357899999999999999999999999987
No 59
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=98.34 E-value=1.1e-06 Score=72.49 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=60.3
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECC---c------------------cCC-------CCCCEEEECCCch
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK---P------------------DQL-------QNVSSLIIPGGES 48 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~---~------------------~~l-------~~~d~lilpGG~~ 48 (247)
|||+||.++|- +...++.|++.|+++.+++. . +++ ++||.||+|||..
T Consensus 5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~ 84 (194)
T 4gdh_A 5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL 84 (194)
T ss_dssp CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence 48999999984 44677899999998765431 0 011 2479999999964
Q ss_pred hHHHHHHhhCCHHHHHHHHHHc-CCcEEEEehhHHHHHH
Q 025812 49 TTMARLAEYHNLFPALREFVKM-GKPVWGTCAGLIFLAN 86 (247)
Q Consensus 49 ~~~~~l~~~~~~~~~i~~~~~~-g~PilGIC~G~QlL~~ 86 (247)
. .+.+..+..+.++|+++.++ ++++-.||.|..++..
T Consensus 85 ~-~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~~a 122 (194)
T 4gdh_A 85 G-AKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKT 122 (194)
T ss_dssp H-HHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHHHH
T ss_pred h-HhHhhhCHHHHHHHHHhhhcCCceEEeecccccchhh
Confidence 3 23444444567889988765 7899999999855443
No 60
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.33 E-value=6.6e-07 Score=75.09 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=63.7
Q ss_pred EEEEEec----------CCC----hHHHHHHHHhCCCeEEEECCc-------------------------------cC--
Q 025812 2 VVGVLAL----------QGS----FNEHIAALKRLGVKGVEIRKP-------------------------------DQ-- 34 (247)
Q Consensus 2 ~I~vl~~----------~G~----~~~~~~~L~~~G~~v~~~~~~-------------------------------~~-- 34 (247)
||+||.. +|. +....+.|++.|+++.+++.. ++
T Consensus 7 kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 86 (224)
T 1u9c_A 7 RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDD 86 (224)
T ss_dssp EEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGG
T ss_pred eEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcC
Confidence 7999988 663 446778999999998876421 01
Q ss_pred CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 35 l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..++|+||+|||.... ..+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 87 ~~~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 87 AHGFDAIFLPGGHGTM-FDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp GSSCSEEEECCCTTHH-HHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhhCCEEEECCCcchH-HHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 1368999999986532 123223346789999999999999999999999977
No 61
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.32 E-value=1.3e-06 Score=79.13 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=64.7
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEECCc--------------------cCCC--CCCEEEECCCchhHHHHHH
Q 025812 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP--------------------DQLQ--NVSSLIIPGGESTTMARLA 55 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~--------------------~~l~--~~d~lilpGG~~~~~~~l~ 55 (247)
||+||.++|- +....+.|++.|+++.+++.. +++. ++|.||+|||... ..+.
T Consensus 12 kV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~--~~l~ 89 (365)
T 3fse_A 12 KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAP--DKMR 89 (365)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHH--HHHT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcch--hhcc
Confidence 7999999883 446779999999988776421 1122 5899999998632 2333
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 90 ~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 90 RNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 33356889999999999999999999999987
No 62
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.30 E-value=9.5e-07 Score=74.86 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=63.9
Q ss_pred EEEEEec-----CCC----hHHHHHHHHhCCCeEEEECCc------------------------------------cC--
Q 025812 2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP------------------------------------DQ-- 34 (247)
Q Consensus 2 ~I~vl~~-----~G~----~~~~~~~L~~~G~~v~~~~~~------------------------------------~~-- 34 (247)
||+||.+ +|. +....+.|++.|+++.+++.. ++
T Consensus 8 kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~ 87 (232)
T 1vhq_A 8 KIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQAD 87 (232)
T ss_dssp EEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCC
T ss_pred eEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcC
Confidence 7999998 774 345678999999998876421 11
Q ss_pred CCCCCEEEECCCchhH--HHH-------HHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 35 LQNVSSLIIPGGESTT--MAR-------LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 35 l~~~d~lilpGG~~~~--~~~-------l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
.+++|.||+|||.... +.. ++.+..+.++|+++.++++++.+||.|.++|+.++
T Consensus 88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL 150 (232)
T 1vhq_A 88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF 150 (232)
T ss_dssp GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence 2368999999986431 110 11123467899999999999999999999999884
No 63
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.29 E-value=7.8e-07 Score=86.04 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=67.2
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCeEEEECCcc-----------CCCCCCEEEECCCchhH------HHHHHhhCC
Q 025812 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPD-----------QLQNVSSLIIPGGESTT------MARLAEYHN 59 (247)
Q Consensus 2 ~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~~-----------~l~~~d~lilpGG~~~~------~~~l~~~~~ 59 (247)
|||||..+|+ +..+.++|++.|+.+.++.... +...||+||||||.... .+.|+.+..
T Consensus 539 KVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~ 618 (688)
T 3ej6_A 539 RVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGR 618 (688)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTH
T ss_pred EEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCHH
Confidence 8999998882 4467899999999999986421 12468999999995421 123433345
Q ss_pred HHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 60 LFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
..++|+++.+.+|||-+||.|.++|..+-
T Consensus 619 a~~fV~e~~~hgKpIAAIchgp~lL~~AG 647 (688)
T 3ej6_A 619 PSQILTDGYRWGKPVAAVGSAKKALQSIG 647 (688)
T ss_dssp HHHHHHHHHHTTCCEEEEGGGHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEeCccHHHHHHcC
Confidence 67899999999999999999999999873
No 64
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.25 E-value=5.8e-07 Score=87.52 Aligned_cols=85 Identities=25% Similarity=0.194 Sum_probs=65.6
Q ss_pred CEEEEEecCC----ChHHHHHHHHhCCCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G----~~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
+||+||..+| .+..++++|++.|+++.+++.. ++. ..+|+||||||.. +.|..
T Consensus 601 rKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGGg~---~~Lr~ 677 (753)
T 3ttv_A 601 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNI---ADIAD 677 (753)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCG---GGTTT
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCCCh---HHhhh
Confidence 3899999888 3557889999999999887532 112 2489999999822 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHhh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 88 (247)
+..+.++|+++.+.+|||-+||.|.++|+.+.
T Consensus 678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AG 709 (753)
T 3ttv_A 678 NGDANYYLMEAYKHLKPIALAGDARKFKATIK 709 (753)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGT
T ss_pred CHHHHHHHHHHHhcCCeEEEECchHHHHHHcC
Confidence 33467899999999999999999999999873
No 65
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.16 E-value=5.4e-06 Score=80.99 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=66.3
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEECCc------------------cCC--CCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+||.++|- +....+.|+..|+++.+++.. +++ ..+|+||+|||... ...+..
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~-~~~l~~ 613 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA-AETLSK 613 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHH-HHHHHT
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCccc-Hhhhcc
Confidence 58999999884 446778999999999887532 111 35899999999532 223433
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 57 ~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
+..+.++|+++.+.+++|.+||.|..+|+.+
T Consensus 614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~A 644 (715)
T 1sy7_A 614 NGRALHWIREAFGHLKAIGATGEAVDLVAKA 644 (715)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECHHHHHHHHc
Confidence 3456889999999999999999999999988
No 66
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.15 E-value=2.9e-06 Score=72.84 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=40.7
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.++|+||+|||... +..+..+..+.++|+++.++++|+.+||.|..+|+.+
T Consensus 104 ~~yD~l~ipGG~g~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGA-LYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 36899999999743 2234333456789999999999999999999999876
No 67
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.05 E-value=3.2e-06 Score=72.09 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=56.1
Q ss_pred hHHHHHHHHhCCCeEEEECCc----------------------------------------cC--CCCCCEEEECCCchh
Q 025812 12 FNEHIAALKRLGVKGVEIRKP----------------------------------------DQ--LQNVSSLIIPGGEST 49 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~----------------------------------------~~--l~~~d~lilpGG~~~ 49 (247)
+....+.|++.|+++++++.. ++ ..++|+||+|||...
T Consensus 31 ~~~p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~ 110 (243)
T 1rw7_A 31 ALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGT 110 (243)
T ss_dssp HHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCc
Confidence 345678999999999887531 11 136899999998653
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 50 ~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
. ..+..+..+.++|+++.++++|+.+||.|..+|+.+
T Consensus 111 ~-~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 111 L-FDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp H-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred h-hhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 2 223333356889999999999999999999999987
No 68
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.02 E-value=4e-06 Score=81.22 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=66.5
Q ss_pred CEEEEEec--CC----ChHHHHHHHHhCCCeEEEECCcc-----------CCCCCCEEEECCCchh--------------
Q 025812 1 MVVGVLAL--QG----SFNEHIAALKRLGVKGVEIRKPD-----------QLQNVSSLIIPGGEST-------------- 49 (247)
Q Consensus 1 m~I~vl~~--~G----~~~~~~~~L~~~G~~v~~~~~~~-----------~l~~~d~lilpGG~~~-------------- 49 (247)
+||+||.. +| .+..+.++|++.|++++++.... +...+|+||||||...
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~ 609 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG 609 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence 38999997 55 35578899999999999886421 2347999999998532
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
..+.|..+....++|+++.+.||||-+||.|-++|..+
T Consensus 610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 01234333456789999999999999999999999876
No 69
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.02 E-value=7e-06 Score=70.32 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=40.7
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.++|+|++|||... +..+..+..+.++|+++.++++|+.+||.|..+|+.+
T Consensus 97 ~~yD~l~vpGG~~~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGA-LFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 36899999999653 2233333456889999999999999999999999876
No 70
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.94 E-value=4.8e-06 Score=70.99 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=56.2
Q ss_pred EEEEEecCCC----hHHHHHHHHhCC--CeEEEECCc-----------------cCCCCCCEEEECCC-chhHHHHHHhh
Q 025812 2 VVGVLALQGS----FNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLIIPGG-ESTTMARLAEY 57 (247)
Q Consensus 2 ~I~vl~~~G~----~~~~~~~L~~~G--~~v~~~~~~-----------------~~l~~~d~lilpGG-~~~~~~~l~~~ 57 (247)
||+||.++|- +....+.|+..+ +++.+++.. ++..++|.||+||| ... ..+..+
T Consensus 22 kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~--~~l~~~ 99 (236)
T 3bhn_A 22 KVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI--PAALQD 99 (236)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEESSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHH--HHHHTC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEECCCcEEecCCcEEecCcccccccCCCEEEEcCCccCH--hhhccC
Confidence 7999999884 445677888765 577665411 12457899999999 432 223333
Q ss_pred CCHHHHHHHHHHcCC-cEEEEehhHHHHHHh
Q 025812 58 HNLFPALREFVKMGK-PVWGTCAGLIFLANK 87 (247)
Q Consensus 58 ~~~~~~i~~~~~~g~-PilGIC~G~QlL~~~ 87 (247)
..+.++| ..++++ ++.+||.|..+|+++
T Consensus 100 ~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 100 ENFMSAL--KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence 3456667 344566 999999999999987
No 71
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=97.72 E-value=2.6e-05 Score=68.42 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHHHHHh
Q 025812 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (247)
Q Consensus 36 ~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 87 (247)
.++|+||+|||.... ..+..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 144 ~~yD~livPGG~g~~-~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 144 SEYAAIFVPGGHGAL-IGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp CSEEEEEECCSGGGG-SSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccCCEEEecCCcchh-hhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 578999999985321 112222346789999999999999999999988876
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=97.69 E-value=3.5e-05 Score=67.71 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=74.0
Q ss_pred EEEEEec-CCC---h-HHHHHHHHhCCC-eEEEECC--cc---------CCCCCCEEEECCCchhH-HHHHHhhCCHHHH
Q 025812 2 VVGVLAL-QGS---F-NEHIAALKRLGV-KGVEIRK--PD---------QLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~-~G~---~-~~~~~~L~~~G~-~v~~~~~--~~---------~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~ 63 (247)
||+++-. .+. + ..+.++++++|+ ++.++.. .+ .+.++|+|+++||.... ...++ +.++.+.
T Consensus 58 ~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~-~t~l~~~ 136 (291)
T 3en0_A 58 IIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLA-DTPLMDR 136 (291)
T ss_dssp EEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHT-TCHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHH-hCCHHHH
Confidence 6888865 333 2 256789999999 6665532 11 25689999999996644 34443 4678899
Q ss_pred HHHHHHcC-CcEEEEehhHHHHHHhhhcc-----cC--C---CcccccceeeE-EEee
Q 025812 64 LREFVKMG-KPVWGTCAGLIFLANKAVGQ-----KL--G---GQELVGGLDCT-VHRN 109 (247)
Q Consensus 64 i~~~~~~g-~PilGIC~G~QlL~~~~~~~-----~~--g---~~~~LG~l~g~-v~~~ 109 (247)
|++++++| .|+.|.|+|..+++..+-.. .. + -.++||+++.. +..+
T Consensus 137 L~~~~~~G~~~~~GtSAGA~i~~~~m~~~g~s~~~p~~~~v~~~~GLGll~~~~id~H 194 (291)
T 3en0_A 137 IRQRVHNGEISLAGTSAGAAVMGHHMIAGGSSGEWPNRALVDMAVGLGIVPEIVVDQH 194 (291)
T ss_dssp HHHHHHTTSSEEEEETHHHHTTSSEEEEEECCSSCCCGGGEEEEECCCSSTTEEEECS
T ss_pred HHHHHHCCCeEEEEeCHHHHhhhHheEcCCCCccCcccCceeecCcccccCCCccccc
Confidence 99999999 99999999999998764211 00 0 12578888875 4444
No 73
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=95.91 E-value=0.015 Score=49.73 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=50.2
Q ss_pred ecCCChHHHHHHHHhCCCeEEEE-------CCc---cCCCCCCEEEECCCchhHHH----HHHh---hCCHHHHHHHHHH
Q 025812 7 ALQGSFNEHIAALKRLGVKGVEI-------RKP---DQLQNVSSLIIPGGESTTMA----RLAE---YHNLFPALREFVK 69 (247)
Q Consensus 7 ~~~G~~~~~~~~L~~~G~~v~~~-------~~~---~~l~~~d~lilpGG~~~~~~----~l~~---~~~~~~~i~~~~~ 69 (247)
.+.+....+.++|+..+++++++ .-| +++.++|.||+.+-...... .... .....+.|+++++
T Consensus 37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~ 116 (256)
T 2gk3_A 37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK 116 (256)
T ss_dssp EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH
Confidence 45566778999999999999987 333 24678999999873221111 1100 0245789999999
Q ss_pred cCCcEEEEe
Q 025812 70 MGKPVWGTC 78 (247)
Q Consensus 70 ~g~PilGIC 78 (247)
+|..+++|.
T Consensus 117 ~GGgll~ig 125 (256)
T 2gk3_A 117 NGGGLLMIG 125 (256)
T ss_dssp TTCEEEEEC
T ss_pred hCCEEEEEC
Confidence 999999993
No 74
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=94.40 E-value=0.054 Score=46.98 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=49.5
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEEEECCc-cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 1 m~I~vl~~~G~-~~~~~~~L~~~G~~v~~~~~~-~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
|||+|+..... ...+.++|++.|+++.+.... ..+.++|.+|.-||..+.+.. .+.+... +|++||=
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~a----------a~~~~~~-~PilGIN 98 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI----------LQKLKRC-PPIFGIN 98 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHH----------HTTCSSC-CCEEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHH----------HHHhCCC-CcEEEEC
Confidence 89999987554 567889999999998875533 245689999998887654322 2222224 8999998
Q ss_pred hh
Q 025812 79 AG 80 (247)
Q Consensus 79 ~G 80 (247)
.|
T Consensus 99 ~G 100 (278)
T 1z0s_A 99 TG 100 (278)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 75
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=91.89 E-value=0.79 Score=39.53 Aligned_cols=61 Identities=16% Similarity=0.046 Sum_probs=43.1
Q ss_pred HHHHHHHhCC-CeEEEECCc----------cCCCCCCEEEECC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehhH
Q 025812 14 EHIAALKRLG-VKGVEIRKP----------DQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 14 ~~~~~L~~~G-~~v~~~~~~----------~~l~~~d~lilpG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+.+.|++.| ++|++..++ ++|.++|+||+.- +.. ..+ ...+.|.+++++|++++|+..+.
T Consensus 24 ~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~-l~~------~~~~~l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 24 VLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDS-WPE------ETNRRFLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp HHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSC-CCH------HHHHHHHHHHHTTCEEEEEGGGG
T ss_pred HHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCc-CCH------HHHHHHHHHHHcCCCEEEEeccc
Confidence 5678888888 888887653 2578999999843 211 001 12467788999999999999754
No 76
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=90.82 E-value=0.37 Score=41.18 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=43.3
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHc--CCc
Q 025812 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM--GKP 73 (247)
Q Consensus 1 m~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~--g~P 73 (247)
|||+|+.++.. ...+.++|++.|+++ +..++|.+|.-||..+.... .+.+... +.|
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v-------~~~~~D~vv~lGGDGT~l~a----------a~~~~~~~~~~P 63 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEY-------DDVEPEIVISIGGDGTFLSA----------FHQYEERLDEIA 63 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEE-------CSSSCSEEEEEESHHHHHHH----------HHHTGGGTTTCE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEe-------CCCCCCEEEEEcCcHHHHHH----------HHHHhhcCCCCC
Confidence 89999987432 124667788889887 23578999998887654322 2233333 899
Q ss_pred EEEEehhH
Q 025812 74 VWGTCAGL 81 (247)
Q Consensus 74 ilGIC~G~ 81 (247)
++||=.|.
T Consensus 64 ilGIn~G~ 71 (272)
T 2i2c_A 64 FIGIHTGH 71 (272)
T ss_dssp EEEEESSS
T ss_pred EEEEeCCC
Confidence 99997663
No 77
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=87.35 E-value=1.1 Score=38.33 Aligned_cols=72 Identities=13% Similarity=-0.037 Sum_probs=46.7
Q ss_pred EEEEEec---CCChHHHHHHHHhCCCeEEEECCc------cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 2 ~I~vl~~---~G~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
||.|+.- +.....+.++|+..|++|.+++.. ++|.++|.||++--....+.. ...+.|++++++|.
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~-----~~~~~L~~yV~~GG 80 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTA-----QAIDQLVTMVKAGC 80 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCH-----HHHHHHHHHHHTTC
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCH-----HHHHHHHHHHHhCC
Confidence 4666641 112346788999999999987643 246799999997411111110 12578899999888
Q ss_pred cEEEEe
Q 025812 73 PVWGTC 78 (247)
Q Consensus 73 PilGIC 78 (247)
-++.+-
T Consensus 81 gLi~~g 86 (259)
T 3rht_A 81 GLVMLG 86 (259)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 777663
No 78
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=86.62 E-value=1.9 Score=37.37 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=43.6
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCcc----------------------------CCCCCCEEEECCCc
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKPD----------------------------QLQNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~~----------------------------~l~~~d~lilpGG~ 47 (247)
||+|+.++.. ...+.++|++.|+++.+..... ..+++|.+|.-||.
T Consensus 6 ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGD 85 (307)
T 1u0t_A 6 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGD 85 (307)
T ss_dssp EEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCC
Confidence 7999887543 3367889999999876542110 12357999888887
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 48 ~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
.+... .++.+...+.|++||=.|
T Consensus 86 GT~l~----------a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 86 GTFLR----------AAELARNASIPVLGVNLG 108 (307)
T ss_dssp HHHHH----------HHHHHHHHTCCEEEEECS
T ss_pred HHHHH----------HHHHhccCCCCEEEEeCC
Confidence 65432 223333457999999765
No 79
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=85.14 E-value=0.75 Score=39.40 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=44.8
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEECCc--------------cC-CCCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQ-LQNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------~~-l~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
||+|+.+++. ...+.++|++.|+++.+.... +. ..++|.||.-||..+...
T Consensus 7 ki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~-------- 78 (292)
T 2an1_A 7 CIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLG-------- 78 (292)
T ss_dssp EEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHH--------
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHH--------
Confidence 6999887542 336789999999998765321 00 135799999998765432
Q ss_pred HHHHHHHHHcCCcEEEEehh
Q 025812 61 FPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G 80 (247)
.++.+...+.|+|||=.|
T Consensus 79 --a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 79 --AARTLARYDINVIGINRG 96 (292)
T ss_dssp --HHHHHTTSSCEEEEBCSS
T ss_pred --HHHHhhcCCCCEEEEECC
Confidence 233344457999999655
No 80
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=83.71 E-value=1.2 Score=42.94 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHhCCCeEEEECCc-----cCCCCCCEEEECCCchh----HHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 15 HIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGEST----TMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~-----~~l~~~d~lilpGG~~~----~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
++++|..++++++.++.. +.++++|.||.+|-..+ ...+.. ....+.||+++.+|.-++||..
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~L~d~DVIIn~G~A~TalSgg~~W~~--p~~~~aLR~fV~~GGgLIgVGe 544 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDVWTN--PKLVETVRAWVRGGGAFVGVGE 544 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCCCTTCCEEEEEECTTSTTTCGGGGGC--HHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHhcCCCceEEecHHHhccccccccCCEEEecCcchhcccCccccCC--HHHHHHHHHHHHcCCcEEEeCC
Confidence 789999999999988643 34789999999982211 111211 2357899999999999999973
No 81
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=83.10 E-value=3.1 Score=40.19 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
....++|.++|+.+.+++..+++..++.||+|.-+.-. ..+.+.|++++++|.-++..+
T Consensus 428 ~~~y~aL~~~gi~vD~v~~~~dL~~Yklvv~P~~~~~~-------~~~~~~L~~yV~~GG~lv~t~ 486 (675)
T 3tty_A 428 HKYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVK-------PGFAERVERFVAQGGTFVTTF 486 (675)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCCTTCSEEEETTCCBCC-------TTHHHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHHcCceEEEecCcCCcccCCEEEEeccEecC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 46789999999999999988899999999999853210 234677889999887777665
No 82
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=82.10 E-value=2.2 Score=36.08 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHhCCCeEEEEC--Ccc------CCCCCCEEEECCC-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 16 IAALKRLGVKGVEIR--KPD------QLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 16 ~~~L~~~G~~v~~~~--~~~------~l~~~d~lilpGG-~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
.+.|+..|++|++.. +++ .|+++|+||+-|. ....+.. ...+.|++++++|+.++|+=.|
T Consensus 38 ~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~-----~~~~al~~~V~~GgG~vgiH~a 106 (252)
T 1t0b_A 38 ASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD-----EVVERVHRRVLEGMGLIVLHSG 106 (252)
T ss_dssp HHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH-----HHHHHHHHHHHTTCEEEEEGGG
T ss_pred HHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCH-----HHHHHHHHHHHcCCCEEEEccc
Confidence 688999999998754 332 2679999999431 1111110 1256788999999999999666
No 83
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=78.88 E-value=6.7 Score=31.18 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred CEEEEEecC----------CCh-----HHHHHHHHhCCCeEEE---ECCc-c-------C-CCC--CCEEEECCCc
Q 025812 1 MVVGVLALQ----------GSF-----NEHIAALKRLGVKGVE---IRKP-D-------Q-LQN--VSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~----------G~~-----~~~~~~L~~~G~~v~~---~~~~-~-------~-l~~--~d~lilpGG~ 47 (247)
+||+||... |.. ..+...|++.|+++.. +.+. + + +++ +|.||.+||.
T Consensus 16 ~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 478888864 422 2477899999998764 3332 1 1 344 9999999973
No 84
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=77.86 E-value=4.6 Score=31.77 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=31.7
Q ss_pred CEEEEEecCC-------------Ch--HHHHHHHHhCCCeEEE---ECCc-c----------CCCCCCEEEECCCc
Q 025812 1 MVVGVLALQG-------------SF--NEHIAALKRLGVKGVE---IRKP-D----------QLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G-------------~~--~~~~~~L~~~G~~v~~---~~~~-~----------~l~~~d~lilpGG~ 47 (247)
|||+||.... +- .-+.+.|++.|+++.. +.+. + ...++|.||.+||.
T Consensus 16 ~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 5789997532 11 2467899999998763 4432 1 12468999999973
No 85
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=77.60 E-value=4.8 Score=29.71 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=38.6
Q ss_pred hHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 12 FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
+..+...|...|++++- ..+..+|++|+.-|..+. .++. ...|+.+.+.|+|++||=
T Consensus 17 ~~~L~~~l~~~~f~~~~----~~I~~~~~vIvL~G~~t~~s~wv------~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 17 YRVFLERLEQSGLEWRP----ATPEDADAVIVLAGLWGTRRDEI------LGAVDLARKSSKPIITVR 74 (111)
T ss_dssp HHHHHHHHHHHCSCEEE----CCSSSCSEEEEEGGGTTTSHHHH------HHHHHHHTTTTCCEEEEC
T ss_pred HHHHHHHHhCCCCeeec----CccccCCEEEEEeCCCcCCChHH------HHHHHHHHHcCCCEEEEE
Confidence 34566667666777775 678999999876554332 3343 345667777899999984
No 86
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=76.39 E-value=1.4 Score=35.16 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=32.5
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECCc-cC--------CCCCCEEEECCCc
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~~-~~--------l~~~d~lilpGG~ 47 (247)
||++||... | |-..+.+.|++.|+++.. +.+. +. ++++|.||.+||.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~ 72 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGL 72 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCC
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 789999863 3 223577899999998763 4332 11 2468999999973
No 87
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=73.75 E-value=4 Score=32.07 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.1
Q ss_pred CEEEEEecCC--------ChHHHHHHHHhCCCeEEE---ECCc-c--------CCC--CCCEEEECCCc
Q 025812 1 MVVGVLALQG--------SFNEHIAALKRLGVKGVE---IRKP-D--------QLQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G--------~~~~~~~~L~~~G~~v~~---~~~~-~--------~l~--~~d~lilpGG~ 47 (247)
||++||.... |-..+.+.|++.|+++.. +.+. + -++ ++|.||.+||.
T Consensus 14 ~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 14 VRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp CEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred CEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5889998643 223577899999998763 3332 1 134 79999999974
No 88
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=71.37 E-value=16 Score=31.56 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.3
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~ 30 (247)
|||.|+...|.=-+ +.+.|.+.|++|...+
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEc
Confidence 47888888776554 7888999999888754
No 89
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=71.37 E-value=22 Score=28.38 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=47.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCc-cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~-~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC 78 (247)
|||+|+- -|+.. .+...|.+.|.++..+... +.+.++|.+|+.=. +..... +.+.+...+. +..++-++
T Consensus 20 ~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~aD~vi~av~-~~~~~~------v~~~l~~~~~-~~~vi~~~ 90 (209)
T 2raf_A 20 MEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVP-YPALAA------LAKQYATQLK-GKIVVDIT 90 (209)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCCCSSCCSEEEECSC-HHHHHH------HHHHTHHHHT-TSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHhccCCEEEEcCC-cHHHHH------HHHHHHHhcC-CCEEEEEC
Confidence 7899998 58888 5778999999998877543 35678999998543 222222 2334445555 66666565
Q ss_pred hhH
Q 025812 79 AGL 81 (247)
Q Consensus 79 ~G~ 81 (247)
.|.
T Consensus 91 ~g~ 93 (209)
T 2raf_A 91 NPL 93 (209)
T ss_dssp CCB
T ss_pred CCC
Confidence 543
No 90
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=70.81 E-value=16 Score=33.66 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=48.8
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEECCc---------------------cCCCCCCEEEECCCchh---HHHHHHh
Q 025812 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGEST---TMARLAE 56 (247)
Q Consensus 2 ~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~lilpGG~~~---~~~~l~~ 56 (247)
||.|+...|.=-+ +.++|.+.|++|...+.. +.+.++|.||++-|.+. .+...++
T Consensus 24 ~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a~~ 103 (494)
T 4hv4_A 24 HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAARE 103 (494)
T ss_dssp EEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHHHH
T ss_pred EEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 6888888777664 889999999998876431 23467899999555321 1222221
Q ss_pred hCCH-----HHHHHHHHHcCCcEEEEehh
Q 025812 57 YHNL-----FPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 57 ~~~~-----~~~i~~~~~~g~PilGIC~G 80 (247)
.++ .+++.++. +.+|++||..-
T Consensus 104 -~gi~v~~~~e~l~~~~-~~~~~IaVTGT 130 (494)
T 4hv4_A 104 -ARIPVIRRAEMLAELM-RYRHGIAVAGT 130 (494)
T ss_dssp -TTCCEEEHHHHHHHHH-TTSEEEEEECS
T ss_pred -CCCCEEcHHHHHHHHh-cCCCEEEEecC
Confidence 221 35555544 46789999853
No 91
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=70.59 E-value=7.8 Score=28.85 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=30.0
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECC----ccCCCC-CCEEEEC
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK----PDQLQN-VSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~----~~~l~~-~d~lilp 44 (247)
|||.|+-. .||-.. +.+.+++.|+++.+++- +.++.+ +|.||+.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~ 55 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLG 55 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEE
Confidence 89988876 365443 44556667888876642 335778 9999884
No 92
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=70.28 E-value=6.9 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.0
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEECCcc----C----CCCCCEEEECC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~~G~~v~~~~~~~----~----l~~~d~lilpG 45 (247)
|||.|+-+. ||-. .+.+.|++.|+++.+++..+ + +.++|+|||.-
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEc
Confidence 899888863 6655 35566777798887765322 2 34799999954
No 93
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=70.17 E-value=16 Score=26.01 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=46.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHc-CC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM-GK 72 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~-g~ 72 (247)
++|.|++.+-... .+.+.|+..|+++..+.+.++ + ..+|.+|+|+... .+ +.+.|++. . ..
T Consensus 19 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~~~~g--~~-------~~~~l~~~--~~~~ 87 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNA--LS-------FVSRIKEK--HSSI 87 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECSTTH--HH-------HHHHHHHH--STTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEcCccH--HH-------HHHHHHhc--CCCc
Confidence 4788887544444 567889999999888776542 1 4689988554221 11 23445554 5 78
Q ss_pred cEEEEehhH--HHHHHhh
Q 025812 73 PVWGTCAGL--IFLANKA 88 (247)
Q Consensus 73 PilGIC~G~--QlL~~~~ 88 (247)
|++.+..-. .....++
T Consensus 88 ~ii~ls~~~~~~~~~~~~ 105 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAF 105 (137)
T ss_dssp EEEEEESSCCHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHH
Confidence 888887432 4444443
No 94
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=68.46 E-value=25 Score=26.01 Aligned_cols=82 Identities=9% Similarity=0.048 Sum_probs=49.2
Q ss_pred EEEEEecC---CChH-HHHHHHHhCCCeEEEECCc-------------cCCCCCCEEEECCCc---hhHHHHHHhh----
Q 025812 2 VVGVLALQ---GSFN-EHIAALKRLGVKGVEIRKP-------------DQLQNVSSLIIPGGE---STTMARLAEY---- 57 (247)
Q Consensus 2 ~I~vl~~~---G~~~-~~~~~L~~~G~~v~~~~~~-------------~~l~~~d~lilpGG~---~~~~~~l~~~---- 57 (247)
+|||+..+ +.+. .+.+.|.+.|+++..+.+. .++.+.|.+++.=-. ++.++++.+.
T Consensus 6 siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~~~g~k~ 85 (122)
T 3ff4_A 6 KTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKPKR 85 (122)
T ss_dssp CEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCCSE
T ss_pred EEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHHhcCCCE
Confidence 48888753 4454 4678899999988877643 245448988874322 2223332111
Q ss_pred ----CCH--HHHHHHHHHcCCcEEEEehhHHH
Q 025812 58 ----HNL--FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 58 ----~~~--~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.++ .+.++.+.+.|+.++|=|+|.++
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 011 23444444578888898998876
No 95
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=68.22 E-value=5 Score=31.68 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=31.6
Q ss_pred CEEEEEecCC--------ChHHHHHHHHhCCCeEEE---ECCc-cC--------CC--CCCEEEECCCc
Q 025812 1 MVVGVLALQG--------SFNEHIAALKRLGVKGVE---IRKP-DQ--------LQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G--------~~~~~~~~L~~~G~~v~~---~~~~-~~--------l~--~~d~lilpGG~ 47 (247)
||++||.... |-..+.+.|++.|+++.. +.+. +. ++ ++|.||.+||.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 6899998642 223577899999998763 3332 11 22 49999999973
No 96
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=67.93 E-value=16 Score=31.40 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=30.5
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCC--eEEEEC------------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGV--KGVEIR------------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~--~v~~~~------------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+- -|++.. +...|...+. ++..++ +.+++.++|.+|++.|.
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCC
Confidence 9999998 588773 4444544442 454433 12357889999999984
No 97
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=67.67 E-value=3.7 Score=32.28 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=31.8
Q ss_pred CEEEEEecC-----CC-----hHHHHHHHHhCCCeEE---EECCccC--------C-CCCCEEEECCCc
Q 025812 1 MVVGVLALQ-----GS-----FNEHIAALKRLGVKGV---EIRKPDQ--------L-QNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G~-----~~~~~~~L~~~G~~v~---~~~~~~~--------l-~~~d~lilpGG~ 47 (247)
|||+||... |. -..+..+|++.|+++. ++.+.+. + .++|.||.+||.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 478998863 32 2357789999999875 4444331 2 379999999974
No 98
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=66.46 E-value=2.9 Score=35.21 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=38.3
Q ss_pred CEEEEEecC--CC-hHHHHHHHHhC--CCeEEEECCccCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 1 MVVGVLALQ--GS-FNEHIAALKRL--GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 1 m~I~vl~~~--G~-~~~~~~~L~~~--G~~v~~~~~~~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|||+++.++ |. ...+.+.+.+. |+++.. .+.....++|.+|.-||..+.... ++.+.. +.|++
T Consensus 1 mki~ii~Np~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~D~vv~~GGDGTll~~----------a~~~~~-~~Pil 68 (258)
T 1yt5_A 1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGE-ANAPGRVTADLIVVVGGDGTVLKA----------AKKAAD-GTPMV 68 (258)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHTTTSEEEEEEE-SSSCSCBCCSEEEEEECHHHHHHH----------HTTBCT-TCEEE
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHhcCCceec-ccccccCCCCEEEEEeCcHHHHHH----------HHHhCC-CCCEE
Confidence 899999853 33 22333333322 444432 211112478999998887654332 223333 78999
Q ss_pred EEehh
Q 025812 76 GTCAG 80 (247)
Q Consensus 76 GIC~G 80 (247)
||=.|
T Consensus 69 GIn~G 73 (258)
T 1yt5_A 69 GFKAG 73 (258)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99766
No 99
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=66.08 E-value=12 Score=27.84 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=30.2
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECC----ccCCC-CCCEEEEC
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK----PDQLQ-NVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~----~~~l~-~~d~lilp 44 (247)
|||.|+-. .||-.. +.+.|++.|+++.+++. ..++. ++|.+|+.
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g 56 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFG 56 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEE
Confidence 48888876 466543 45566677888877653 23677 99998884
No 100
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=65.48 E-value=5.2 Score=33.39 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=34.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|||+|+.. |+.. ++...|++.|.++..+..++++.++|.|-+|-
T Consensus 7 mkI~IIG~-G~~G~sLA~~L~~~G~~V~~~~~~~~~~~aDilavP~ 51 (232)
T 3dfu_A 7 LRVGIFDD-GSSTVNMAEKLDSVGHYVTVLHAPEDIRDFELVVIDA 51 (232)
T ss_dssp CEEEEECC-SCCCSCHHHHHHHTTCEEEECSSGGGGGGCSEEEECS
T ss_pred cEEEEEee-CHHHHHHHHHHHHCCCEEEEecCHHHhccCCEEEEcH
Confidence 79999995 7776 68899999999999887777777888333354
No 101
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=64.65 E-value=34 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=31.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EECC----------ccC-C-CCCCEEEECCC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRK----------PDQ-L-QNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~----------~~~-l-~~~d~lilpGG 46 (247)
|||+|+.. |+.. .+.+.|.+.|++++ +++. .++ + .++|.+++.=.
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~ 59 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAAS 59 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSC
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCC
Confidence 89999997 8876 46677778899875 3321 112 3 57899998654
No 102
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=64.34 E-value=8.8 Score=30.00 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=29.8
Q ss_pred CEEEEEecC--CChH----HHHHHHHh-CCCeEEEECC-----------------------ccCCCCCCEEEEC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKR-LGVKGVEIRK-----------------------PDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~-~G~~v~~~~~-----------------------~~~l~~~d~lilp 44 (247)
|||.|+..+ ||-. .+.+.+++ .|+++++++- .+++.++|+||+.
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 75 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFG 75 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEE
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEE
Confidence 599888864 4433 35566777 7888876542 2346789999984
No 103
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=62.29 E-value=3 Score=32.63 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=31.6
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEE---ECCc-cC--------CC--CCCEEEECCCc
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-DQ--------LQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~v~~---~~~~-~~--------l~--~~d~lilpGG~ 47 (247)
|||+||... | |-..+.+.|++.|+++.. +.+. +. ++ ++|.||.+||.
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 488998863 2 223577899999997763 3332 11 23 69999999974
No 104
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=61.39 E-value=32 Score=26.80 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred EEEEEecCC---------------ChHHHHHHHH----hCCCeEEEECCcc----------CCCCCCEEEE-CCCch
Q 025812 2 VVGVLALQG---------------SFNEHIAALK----RLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (247)
Q Consensus 2 ~I~vl~~~G---------------~~~~~~~~L~----~~G~~v~~~~~~~----------~l~~~d~lil-pGG~~ 48 (247)
||.||.-+. ++.++.+.++ +.|+++..+.... ...++|+||| ||++.
T Consensus 9 ~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 85 (153)
T 3lwz_A 9 HILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFT 85 (153)
T ss_dssp EEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred eEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccce
Confidence 788888543 3445555554 4788888765431 1357999999 88864
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=60.99 E-value=21 Score=28.01 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|+|.|++.+-.+. .+...|+..|+++....+..+ -..+|.+|+|+... .+ +.+.|++. ....|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp~~~g--~~-------~~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNA--LS-------FVSRIKEK-HSSIV 70 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEECCTTH--HH-------HHHHHHHH-CTTSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeCCCCH--HH-------HHHHHHhC-CCCCc
Confidence 7888888544444 466788889999887766542 24689999665322 11 23445554 23789
Q ss_pred EEEEehh--HHHHHHhh
Q 025812 74 VWGTCAG--LIFLANKA 88 (247)
Q Consensus 74 ilGIC~G--~QlL~~~~ 88 (247)
++-+..- ......++
T Consensus 71 ii~lt~~~~~~~~~~~~ 87 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAF 87 (223)
T ss_dssp EEEEESSCCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHH
Confidence 9888743 34444444
No 106
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=60.89 E-value=12 Score=32.66 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=29.5
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEECCcc--------CCCCCCEEEECC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~~G~~v~~~~~~~--------~l~~~d~lilpG 45 (247)
|||.|+..+ ||-. .+.+.+++.|+++.+++..+ ++.++|+||+.-
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigs 315 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGA 315 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 577777753 4433 34556666788887765332 467899999954
No 107
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=60.41 E-value=19 Score=32.52 Aligned_cols=29 Identities=28% Similarity=0.107 Sum_probs=23.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (247)
||.|+...+.=.+..+.|.+.|++|...+
T Consensus 11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D 39 (451)
T 3lk7_A 11 KVLVLGLARSGEAAARLLAKLGAIVTVND 39 (451)
T ss_dssp EEEEECCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEe
Confidence 78999987776678899999999888764
No 108
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=59.80 E-value=26 Score=30.30 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=30.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEEC------------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIR------------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~------------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++ +.+++.++|.+|++.|.
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~ 79 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGL 79 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCC
Confidence 88888884 7776 45555555554 444432 22346789999998874
No 109
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.78 E-value=49 Score=26.82 Aligned_cols=67 Identities=22% Similarity=0.427 Sum_probs=40.8
Q ss_pred EEEEEecC-CC-h-----HHHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ-GS-F-----NEHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~-G~-~-----~~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+..+ .+ + ..+.+++++.|+++.+.....+ + ..+|+||+.+...+.. .+
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---------~~ 77 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVL---------NP 77 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHH---------HH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh---------HH
Confidence 58888753 22 2 2466788889999988753321 1 4799999866432211 12
Q ss_pred HHHHHHHcCCcEEEE
Q 025812 63 ALREFVKMGKPVWGT 77 (247)
Q Consensus 63 ~i~~~~~~g~PilGI 77 (247)
.++++.+.++|+.-+
T Consensus 78 ~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 78 WLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCcEEEe
Confidence 344555568887765
No 110
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=58.62 E-value=11 Score=29.40 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEECCcc-----------------------CCCCCCEEEEC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKPD-----------------------QLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~~G~~v~~~~~~~-----------------------~l~~~d~lilp 44 (247)
|||.|+..+ ||-. .+.+.+++.|+++++++-.+ ++.++|+||+.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 489888863 4433 35566777898887764322 35689999984
No 111
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=58.29 E-value=8.8 Score=30.49 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=31.6
Q ss_pred CEEEEEecCC---------------ChHHHHHHHH----hCCCeEEEECCcc--C--------CCCCCEEEE-CCCch
Q 025812 1 MVVGVLALQG---------------SFNEHIAALK----RLGVKGVEIRKPD--Q--------LQNVSSLII-PGGES 48 (247)
Q Consensus 1 m~I~vl~~~G---------------~~~~~~~~L~----~~G~~v~~~~~~~--~--------l~~~d~lil-pGG~~ 48 (247)
|||.||.-+. ++.++.+.++ +.|+++..+.... + ..++|+||| ||++.
T Consensus 29 M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyT 106 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT 106 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGG
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhh
Confidence 7899998543 3445555444 4788888775431 1 135899999 88864
No 112
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=58.20 E-value=9.8 Score=32.04 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCeEEEECCc----------cCCCCCCEEEECC-CchhH----HHHHHh--hCCHHHHHHHHHHcCCcEEE
Q 025812 14 EHIAALKRLGVKGVEIRKP----------DQLQNVSSLIIPG-GESTT----MARLAE--YHNLFPALREFVKMGKPVWG 76 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~----------~~l~~~d~lilpG-G~~~~----~~~l~~--~~~~~~~i~~~~~~g~PilG 76 (247)
.++++|+..|.+|+.++.. ++|.++|.||+.. +.... ..+... .....+.|++++++|.-++.
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~ 116 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLM 116 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEE
Confidence 4788999999999977542 2467999999985 22111 011110 01337899999999988887
Q ss_pred Ee
Q 025812 77 TC 78 (247)
Q Consensus 77 IC 78 (247)
+-
T Consensus 117 ~g 118 (248)
T 3soz_A 117 IG 118 (248)
T ss_dssp EC
T ss_pred Ec
Confidence 74
No 113
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=57.59 E-value=63 Score=26.14 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=41.1
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+..+ .+ +. .+.+++++.|+++.+.....+ + ..+|+||+.+...+. ..+
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---------~~~ 80 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVY---------IGS 80 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTT---------THH
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH---------HHH
Confidence 58887743 22 22 456788889999887654321 1 479999996643221 123
Q ss_pred HHHHHHHcCCcEEEEe
Q 025812 63 ALREFVKMGKPVWGTC 78 (247)
Q Consensus 63 ~i~~~~~~g~PilGIC 78 (247)
.++++.+.++|+.-+.
T Consensus 81 ~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 81 AIEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCCEEEec
Confidence 3445555688887663
No 114
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=57.30 E-value=35 Score=30.36 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=44.8
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEEC--------------------------CccCC-CCCCEEEECCCch
Q 025812 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIR--------------------------KPDQL-QNVSSLIIPGGES 48 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~G~~v~~~~--------------------------~~~~l-~~~d~lilpGG~~ 48 (247)
+|+|+.=..+ +..+.++|.+.|+++.+-. ..+++ +.+|.+|.-||..
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lGGDG 119 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDG 119 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEESSTT
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEEcChH
Confidence 4777774442 4478899999998876421 01123 4789999888776
Q ss_pred hHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh
Q 025812 49 TTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 49 ~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G 80 (247)
+.+.. .+.+...+.|++||=.|
T Consensus 120 T~L~a----------a~~~~~~~~PvlGiN~G 141 (365)
T 3pfn_A 120 TLLYA----------SSLFQGSVPPVMAFHLG 141 (365)
T ss_dssp HHHHH----------HHHCSSSCCCEEEEESS
T ss_pred HHHHH----------HHHhccCCCCEEEEcCC
Confidence 54322 22333357999999887
No 115
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=57.17 E-value=11 Score=31.75 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=31.5
Q ss_pred CEEEEEecCCChH-----------HHHHHHHhCCCeEEEECCc----------cCCCCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-----------EHIAALKRLGVKGVEIRKP----------DQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-----------~~~~~L~~~G~~v~~~~~~----------~~l~~~d~lilp 44 (247)
||||||....|+. -+.+.|+++|.+|.+++-. .|...+|-+++-
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vv 65 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVV 65 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEE
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEE
Confidence 8999999755422 3568899999999887632 145578877653
No 116
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=56.51 E-value=13 Score=30.98 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=33.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE-CCc------------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKP------------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~------------~~l~~~d~lilpG 45 (247)
|||.|..-.|-+. .+++.|.+.|++|+.+ +++ +.++.+|.+|=.-
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEec
Confidence 9998887667677 5889999999999865 332 1367899988643
No 117
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=56.00 E-value=28 Score=30.03 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=45.1
Q ss_pred EEEEEecC--C--C----hHHHHHHHHhCCCeEEEECCc--c---------CCCCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ--G--S----FNEHIAALKRLGVKGVEIRKP--D---------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~--G--~----~~~~~~~L~~~G~~v~~~~~~--~---------~l~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
||+|+.++ | . ...+.+.|++.|.++.+.... . ....+|.||..||..+..+.+.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~------- 98 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVN------- 98 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHH-------
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHH-------
Confidence 68888874 3 2 236788999999888765321 1 1246899999888765432221
Q ss_pred HHHHHHHcCCcEEEEehhHH-HHHHh
Q 025812 63 ALREFVKMGKPVWGTCAGLI-FLANK 87 (247)
Q Consensus 63 ~i~~~~~~g~PilGIC~G~Q-lL~~~ 87 (247)
.+.+ ...+.|+.+|=+|-- .|++.
T Consensus 99 ~l~~-~~~~~pl~iIP~GT~N~lAr~ 123 (337)
T 2qv7_A 99 GIAE-KPNRPKLGVIPMGTVNDFGRA 123 (337)
T ss_dssp HHTT-CSSCCEEEEEECSSCCHHHHH
T ss_pred HHHh-CCCCCcEEEecCCcHhHHHHH
Confidence 1100 134677777655432 34444
No 118
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.46 E-value=80 Score=25.50 Aligned_cols=67 Identities=9% Similarity=0.214 Sum_probs=38.4
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+... .+ |. .+.+++++.|+++.+.....+ + ..+|+||+.+...+.. .+
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---------~~ 74 (290)
T 2fn9_A 4 KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS---------IA 74 (290)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT---------HH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH---------HH
Confidence 58888743 22 22 456778889999887643211 1 4799999976432211 12
Q ss_pred HHHHHHHcCCcEEEE
Q 025812 63 ALREFVKMGKPVWGT 77 (247)
Q Consensus 63 ~i~~~~~~g~PilGI 77 (247)
.++++.+.++|+..+
T Consensus 75 ~~~~~~~~~iPvV~~ 89 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCV 89 (290)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 233333467787654
No 119
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=55.31 E-value=14 Score=27.89 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=20.0
Q ss_pred CEEEEEec--CCChHHHHHHH-HhC-CCeEE
Q 025812 1 MVVGVLAL--QGSFNEHIAAL-KRL-GVKGV 27 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L-~~~-G~~v~ 27 (247)
|||+|+-+ .||...+++.+ +.+ ++++.
T Consensus 4 ~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~ 34 (151)
T 3edo_A 4 KKTLILYYSWSGETKKMAEKINSEIKDSELK 34 (151)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHSTTCEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHhccCCCEE
Confidence 38888887 47888888888 666 77643
No 120
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=54.91 E-value=8 Score=31.06 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=31.6
Q ss_pred CEEEEEecC-----C----ChHHHHHHHHhCCCeEEE---ECCc-c-------C-C-CCCCEEEECCCc
Q 025812 1 MVVGVLALQ-----G----SFNEHIAALKRLGVKGVE---IRKP-D-------Q-L-QNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G----~~~~~~~~L~~~G~~v~~---~~~~-~-------~-l-~~~d~lilpGG~ 47 (247)
|||+||... | |-..+...|++.|+++.. +.+. + + + .++|.||.+||.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 478888863 3 222577899999998763 4432 1 1 2 579999999974
No 121
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=54.86 E-value=37 Score=28.98 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=29.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEEC------------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIR------------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~------------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++ +.+.+.++|.+|++.|.
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCC
Confidence 88888886 7665 34445555554 444332 22346789999998874
No 122
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=54.17 E-value=9.3 Score=30.22 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=29.8
Q ss_pred CEEEEEecC-----CC-----hHHHHHHHH---hCCCeEE--EECCc-c-------C-CC--CCCEEEECCCc
Q 025812 1 MVVGVLALQ-----GS-----FNEHIAALK---RLGVKGV--EIRKP-D-------Q-LQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G~-----~~~~~~~L~---~~G~~v~--~~~~~-~-------~-l~--~~d~lilpGG~ 47 (247)
|||+||... |. -..+.+.|+ +.|+++. ++.+. + + ++ ++|.||.+||.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 589999863 21 224667777 8999873 23332 1 1 23 79999999973
No 123
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=53.36 E-value=3 Score=32.77 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=25.1
Q ss_pred CCCCEEEECCCchh-----HHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 36 QNVSSLIIPGGEST-----TMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 36 ~~~d~lilpGG~~~-----~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
.++|.||+.||-.. ..+. ..+.|.+..+.+..+.|||+
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~------v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIED------VKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHH------HHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHH------HHHHHHHhhcCCCCEEEEEh
Confidence 57899999998421 1122 24556666556778999997
No 124
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.94 E-value=11 Score=29.65 Aligned_cols=30 Identities=10% Similarity=-0.086 Sum_probs=19.6
Q ss_pred CEEEEEecC----CChHHHHHHHHhC---CCeEEEEC
Q 025812 1 MVVGVLALQ----GSFNEHIAALKRL---GVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~----G~~~~~~~~L~~~---G~~v~~~~ 30 (247)
|||.|+... |+-..+++++.+. |+++++++
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~d 43 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELAD 43 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEe
Confidence 689888864 5544566665442 67887764
No 125
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=52.03 E-value=65 Score=26.51 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=39.6
Q ss_pred EEEEEecC--CCh-----HHHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ--GSF-----NEHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~--G~~-----~~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+..+ ..| ..+.+++++.|+++.+.....+ + ..+|+||+.+...+. +.+
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~---------~~~ 74 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV---------LSN 74 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS---------CHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh---------hHH
Confidence 58887743 222 2466788889999887654321 1 579999997643221 112
Q ss_pred HHHHHHHcCCcEEEE
Q 025812 63 ALREFVKMGKPVWGT 77 (247)
Q Consensus 63 ~i~~~~~~g~PilGI 77 (247)
.++++.+.++|+.-+
T Consensus 75 ~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHHHTTTCEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 334444567777644
No 126
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=51.81 E-value=25 Score=30.89 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=30.0
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEECCcc--------CCCCCCEEEECC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~~G~~v~~~~~~~--------~l~~~d~lilpG 45 (247)
|||.|+.++ ||-. .+.+.+++.|+++.+++..+ ++.++|+||+.-
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigs 315 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFAS 315 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEc
Confidence 588887763 5543 35566666788887764321 467899999954
No 127
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=51.71 E-value=5.2 Score=31.35 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=28.0
Q ss_pred CEEEEEecC-----C-----ChHHHHHH----HHhCCCeEEE---ECCcc-C--------CC-CCCEEEECCCc
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAA----LKRLGVKGVE---IRKPD-Q--------LQ-NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~----L~~~G~~v~~---~~~~~-~--------l~-~~d~lilpGG~ 47 (247)
||++||... | |-..+.+. |++.|+++.. +.+.. . ++ ++|.||.+||.
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 478888853 3 22356778 8999987753 44331 1 23 59999999974
No 128
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=50.62 E-value=22 Score=26.08 Aligned_cols=81 Identities=12% Similarity=-0.037 Sum_probs=46.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHH-c
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVK-M 70 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~-~ 70 (247)
|+|.|++.+-... .+.+.|++.|+++..+.+.++ -..+|.||+-=..+ +..+ +.+.|++... .
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~-------~~~~lr~~~~~~ 80 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYA-------LCRWLKGQPDLR 80 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHH-------HHHHHHHSTTTT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhCCCcC
Confidence 4688887544444 577899999999888776542 24689998832111 1111 2333443211 3
Q ss_pred CCcEEEEeh--hHHHHHHhh
Q 025812 71 GKPVWGTCA--GLIFLANKA 88 (247)
Q Consensus 71 g~PilGIC~--G~QlL~~~~ 88 (247)
..|++.+.. -.....+++
T Consensus 81 ~~pii~~s~~~~~~~~~~~~ 100 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRSL 100 (154)
T ss_dssp TSCEEEEECCCSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHH
Confidence 678888773 334444443
No 129
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=50.53 E-value=26 Score=24.54 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=42.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
|||.|++.+-... .+.+.|++.|+++....+.++ -..+|.+|+-=..+. .+.+ .+.+.+++. ....|
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~----~~~~~l~~~-~~~~~ 81 (130)
T 3eod_A 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR-MNGL----KLLEHIRNR-GDQTP 81 (130)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CH----HHHHHHHHT-TCCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHH----HHHHHHHhc-CCCCC
Confidence 4788888544444 567899999999888776542 246899888422111 0100 123334432 23678
Q ss_pred EEEEeh
Q 025812 74 VWGTCA 79 (247)
Q Consensus 74 ilGIC~ 79 (247)
++-+..
T Consensus 82 ii~~t~ 87 (130)
T 3eod_A 82 VLVISA 87 (130)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 887764
No 130
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=50.15 E-value=90 Score=25.42 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=40.8
Q ss_pred EEEEEecCC-C-hH-----HHHHHHHhCCCeEEEECCc--cC----------C--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQG-S-FN-----EHIAALKRLGVKGVEIRKP--DQ----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G-~-~~-----~~~~~L~~~G~~v~~~~~~--~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|+|+...- + |. .+.+++++.|+++.+.... .+ + ..+|+||+.+...+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~--------- 75 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAF--------- 75 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTT---------
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH---------
Confidence 688887532 2 22 4567888889999887643 11 1 5799999976432211
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025812 61 FPALREFVKMGKPVWGT 77 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGI 77 (247)
.+.++++.+.++|+.-+
T Consensus 76 ~~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 22334444568887765
No 131
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=49.92 E-value=17 Score=30.71 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.4
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCc----------------cCCCCCCEEEEC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP----------------DQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~----------------~~l~~~d~lilp 44 (247)
|||+|+..+.-.....+.|++.|+++.+...+ +.+.++|.|+.+
T Consensus 6 m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 65 (293)
T 3d4o_A 6 KHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLP 65 (293)
T ss_dssp CEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECC
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEec
Confidence 78999875544446788999999998765321 124578999885
No 132
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=49.51 E-value=11 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred CEEEEEecC-----CC-----hHHHHHHHHh---CCCeEEE---ECCc-c-------C-CC--CCCEEEECCCc
Q 025812 1 MVVGVLALQ-----GS-----FNEHIAALKR---LGVKGVE---IRKP-D-------Q-LQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G~-----~~~~~~~L~~---~G~~v~~---~~~~-~-------~-l~--~~d~lilpGG~ 47 (247)
|||+||... |. -..+.+.|++ .|+++.. +.+. + + ++ ++|.||.+||.
T Consensus 15 ~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGt 88 (189)
T 1jlj_A 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGT 88 (189)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCC
Confidence 688999863 21 2256788888 8988763 4333 1 1 23 69999999974
No 133
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.39 E-value=84 Score=25.58 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=39.3
Q ss_pred EEEEEecCC--ChH-----HHHHHHHhCCCeEEEE-CCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHH
Q 025812 2 VVGVLALQG--SFN-----EHIAALKRLGVKGVEI-RKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLF 61 (247)
Q Consensus 2 ~I~vl~~~G--~~~-----~~~~~L~~~G~~v~~~-~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~ 61 (247)
+|+++...- .|. .+.+++++.|+++.++ ....+ + ..+|+||+.+...+. ..
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~---------~~ 76 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE---------LT 76 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT---------TH
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH---------HH
Confidence 577777432 222 4567788889999884 32211 1 479999997643321 12
Q ss_pred HHHHHHHHcCCcEEEE
Q 025812 62 PALREFVKMGKPVWGT 77 (247)
Q Consensus 62 ~~i~~~~~~g~PilGI 77 (247)
+.++++.+.++|+.-+
T Consensus 77 ~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCcEEEE
Confidence 2344455568887654
No 134
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=49.01 E-value=17 Score=25.60 Aligned_cols=43 Identities=12% Similarity=-0.068 Sum_probs=30.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
|+|.|++.+-... .+.+.|++.|+++....+.++ + ..+|.+|+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 3688887544444 567889999999988776543 1 46898888
No 135
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=48.52 E-value=16 Score=26.04 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=43.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHH-HHc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREF-VKM 70 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~-~~~ 70 (247)
++|.|++.+-... .+.+.|++.|+++..+.+.++ -..+|.||+-=..+ +..+ +.+.|++. ...
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~~~~~ 79 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVS-------LIRALRRDSRTR 79 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHH-------HHHHHHTSGGGT
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhCcccC
Confidence 3688887544444 567889999999888776542 14689998832111 1111 12334331 124
Q ss_pred CCcEEEEehhH
Q 025812 71 GKPVWGTCAGL 81 (247)
Q Consensus 71 g~PilGIC~G~ 81 (247)
..|++-+..-.
T Consensus 80 ~~~ii~~s~~~ 90 (140)
T 3grc_A 80 DLAIVVVSANA 90 (140)
T ss_dssp TCEEEEECTTH
T ss_pred CCCEEEEecCC
Confidence 78888877544
No 136
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=48.21 E-value=12 Score=30.46 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=33.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC-----cc-------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK-----PD-------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~-----~~-------~l~~~d~lilpG 45 (247)
|+|+|-.....-..+.+.|++.|+++..+.. .. ++.++|.||++-
T Consensus 2 ~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS 58 (240)
T 3mw8_A 2 MKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFIS 58 (240)
T ss_dssp CCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECS
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEEC
Confidence 7888888766677899999999998765431 11 246799999985
No 137
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=48.17 E-value=12 Score=26.38 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=30.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-... .+.+.|++.|+++..+.+.++ + ..+|.+|+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 53 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFI 53 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEE
Confidence 677777544444 577899999998888776542 1 46899988
No 138
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=48.12 E-value=26 Score=27.19 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=29.0
Q ss_pred CEEEEEecCC-------------C--hHHHHHHHH----hCCCeEEEECCcc--C--------CCCCCEEEE-CCCch
Q 025812 1 MVVGVLALQG-------------S--FNEHIAALK----RLGVKGVEIRKPD--Q--------LQNVSSLII-PGGES 48 (247)
Q Consensus 1 m~I~vl~~~G-------------~--~~~~~~~L~----~~G~~v~~~~~~~--~--------l~~~d~lil-pGG~~ 48 (247)
.||.||.-+. + +.++.+.++ +.|+++..+.... + ..++|++|| ||++.
T Consensus 5 ~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 82 (151)
T 3u80_A 5 TKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFT 82 (151)
T ss_dssp EEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCC
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhh
Confidence 0688887543 1 334444444 4788888775431 1 135899999 99864
No 139
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=47.42 E-value=20 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=33.2
Q ss_pred CEEEEEecC-CCh---HHHHHHHHhCCCeEEEECC------c--------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQ-GSF---NEHIAALKRLGVKGVEIRK------P--------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~-G~~---~~~~~~L~~~G~~v~~~~~------~--------~~l~~~d~lilpG 45 (247)
|+|.|.... ..- ..+.+.|++.|++++.++. + .++.++|.||++-
T Consensus 22 ~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS 84 (286)
T 1jr2_A 22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTS 84 (286)
T ss_dssp CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECC
T ss_pred CEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeC
Confidence 689999875 544 6788999999998765331 1 1346899999986
No 140
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=46.81 E-value=20 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.052 Sum_probs=19.4
Q ss_pred CEEEEEecC-CChH----HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQ-GSFN----EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~-G~~~----~~~~~L~~~G~~v~~~~ 30 (247)
|||.|+..+ ||-. .+.+.+++.|+++++++
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~ 39 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRR 39 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 589888876 3222 34556666788887653
No 141
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=46.74 E-value=15 Score=29.05 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=20.4
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~~G~~v~~~~ 30 (247)
|||.|+..+ ||-. .+.+.+++.|+++++++
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~ 42 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLK 42 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEe
Confidence 689888864 4433 35566777798887654
No 142
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=46.60 E-value=8 Score=34.80 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=43.0
Q ss_pred EEEEEecCCC------hHHHHHHHHhC--CCeEEEECCc---------------------------cC-CCCCCEEEECC
Q 025812 2 VVGVLALQGS------FNEHIAALKRL--GVKGVEIRKP---------------------------DQ-LQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~------~~~~~~~L~~~--G~~v~~~~~~---------------------------~~-l~~~d~lilpG 45 (247)
+|+|+...+. ...+.++|++. |+++.+-... ++ ..++|.+|.-|
T Consensus 43 ~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlG 122 (388)
T 3afo_A 43 NVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLG 122 (388)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhcccCCCEEEEEe
Confidence 6899988664 22567888888 7776542110 00 12479999888
Q ss_pred CchhHHHHHHhhCCHHHHHHHHHHcCC-cEEEEehh
Q 025812 46 GESTTMARLAEYHNLFPALREFVKMGK-PVWGTCAG 80 (247)
Q Consensus 46 G~~~~~~~l~~~~~~~~~i~~~~~~g~-PilGIC~G 80 (247)
|..+.+.. .+.+...++ |+|||=.|
T Consensus 123 GDGTlL~a----------a~~~~~~~vpPiLGIN~G 148 (388)
T 3afo_A 123 GDGTILHG----------VSMFGNTQVPPVLAFALG 148 (388)
T ss_dssp SHHHHHHH----------HHTTTTSCCCCEEEEECS
T ss_pred CcHHHHHH----------HHHhcccCCCeEEEEECC
Confidence 87654322 233333467 89999876
No 143
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=46.55 E-value=16 Score=25.78 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=42.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EECCccCC------CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQL------QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKM 70 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~l------~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~ 70 (247)
|||.|++.+-... .+.+.|++.|++++ ...+.++. ..+|.+|+-=..+ +..+ +.+.|++. ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~-------~~~~l~~~-~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ-------VLETLRKR-QY 73 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHH-------HHHHHHHT-TC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHH-------HHHHHHhc-CC
Confidence 5788888544444 57789999998887 56665431 4689998832111 1111 13334432 23
Q ss_pred CCcEEEEehh
Q 025812 71 GKPVWGTCAG 80 (247)
Q Consensus 71 g~PilGIC~G 80 (247)
..|++-++.-
T Consensus 74 ~~~ii~~s~~ 83 (134)
T 3f6c_A 74 SGIIIIVSAK 83 (134)
T ss_dssp CSEEEEEECC
T ss_pred CCeEEEEeCC
Confidence 6788777643
No 144
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=46.34 E-value=35 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=31.6
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEECCccC----------CCCCCEEEECC
Q 025812 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRKPDQ----------LQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~~----------l~~~d~lilpG 45 (247)
.|+||....+.. .++++++++|+++..+...++ +.++|.++++.
T Consensus 1 mI~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 56 (280)
T 1uc8_A 1 MLAILYDRIRPDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERC 56 (280)
T ss_dssp CEEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECC
T ss_pred CEEEEecCCCHHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECC
Confidence 089999755544 688999999999987753321 34789777775
No 145
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=45.91 E-value=15 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
|||.|++.+-... .+.+.|++.|+++..+.+.++ -..+|.+++
T Consensus 15 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 64 (143)
T 3m6m_D 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIV 64 (143)
T ss_dssp CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 5788887544444 466789999999888776542 146899988
No 146
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=45.53 E-value=26 Score=25.00 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=43.9
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
+|.|++.+-... .+.+.|++.|+++....+..+ -..+|.+|+-- .+. .+.+ .+.+.+++.. ...|+
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~-~~g~----~~~~~l~~~~-~~~pi 78 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEG-EESL----NLIRRIREEF-PDTKV 78 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTT-HHHH----HHHHHHHHHC-TTCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CCC-CcHH----HHHHHHHHHC-CCCCE
Confidence 677777544444 567889999999987776542 24689998843 322 1111 1244455432 36898
Q ss_pred EEEehh
Q 025812 75 WGTCAG 80 (247)
Q Consensus 75 lGIC~G 80 (247)
+.+..-
T Consensus 79 i~ls~~ 84 (142)
T 2qxy_A 79 AVLSAY 84 (142)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 888743
No 147
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=45.25 E-value=31 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=30.3
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEECC--ccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~--~~~l~~~d~lilpG 45 (247)
|||.|+-+ .||-.. +.+.|+..|+++.++.. ..++.++|.||+.-
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~l~~~d~vi~g~ 54 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVIS 54 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTTSCSSCSEEEEEEEC
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCCHHHcccCCeEEEEE
Confidence 37888775 466553 44566667888877653 34677889888843
No 148
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=45.21 E-value=20 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.028 Sum_probs=25.7
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||.++.+++. +..+.+.|++.|.+|+++..+
T Consensus 23 MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~ 59 (400)
T 4amg_A 23 MRALFITSPGLSHILPTVPLAQALRALGHEVRYATGG 59 (400)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECS
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 99999987652 447899999999999987543
No 149
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=45.08 E-value=22 Score=24.96 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=42.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CC-CCCEEEECCCch---hHHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQ-NVSSLIIPGGES---TTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~-~~d~lilpGG~~---~~~~~l~~~~~~~~~i~~~~~ 69 (247)
|+|.|++.+-... .+.+.|+..|+++..+.+.++ -. .+|.+|+-=..+ +..+ +.+.+++. .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-------~~~~l~~~-~ 77 (132)
T 2rdm_A 6 VTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-------VARVAREI-D 77 (132)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-------HHHHHHHH-C
T ss_pred ceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-------HHHHHHhc-C
Confidence 3688887544444 567889999999888776542 12 689998732111 1121 23344443 2
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
...|++-+..
T Consensus 78 ~~~~ii~~s~ 87 (132)
T 2rdm_A 78 PNMPIVYISG 87 (132)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 3688887764
No 150
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=44.58 E-value=34 Score=24.87 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=43.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|.|++.+-... .+.+.|++.|+++..+.+..+ + ..+|.+|+--..+ +..+ +.+.|++. ...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~-------~~~~l~~~-~~~ 75 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLA-------LFRKILAL-DPD 75 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHH-------HHHHHHHH-CTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhh-CCC
Confidence 5788887544444 567899999999888776542 2 3589988832211 1121 23344443 247
Q ss_pred CcEEEEeh
Q 025812 72 KPVWGTCA 79 (247)
Q Consensus 72 ~PilGIC~ 79 (247)
.|++.+..
T Consensus 76 ~pii~ls~ 83 (155)
T 1qkk_A 76 LPMILVTG 83 (155)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEC
Confidence 89888864
No 151
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=44.56 E-value=40 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.1
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEECCccC-C-----CCCCEEEE
Q 025812 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPDQ-L-----QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~~-l-----~~~d~lil 43 (247)
|||+||.- |. -..++++|++.|++++.+...+. + .++|.++.
T Consensus 14 ~~v~vl~g-g~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 14 GKVAVLFG-GESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp CEEEEECC-CSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred ceEEEEEC-CCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 48999983 32 23678999999999999874432 1 46888765
No 152
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=44.23 E-value=46 Score=28.58 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=33.3
Q ss_pred EEEEEecC--CC---hHHHHHHHHhCCCeEEEECC--ccC---------CCCCCEEEECCCchhH
Q 025812 2 VVGVLALQ--GS---FNEHIAALKRLGVKGVEIRK--PDQ---------LQNVSSLIIPGGESTT 50 (247)
Q Consensus 2 ~I~vl~~~--G~---~~~~~~~L~~~G~~v~~~~~--~~~---------l~~~d~lilpGG~~~~ 50 (247)
||+|+.++ |+ ...+.+.|++.|.++.+... +.+ ...+|.||.-||..+.
T Consensus 31 ~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl 95 (332)
T 2bon_A 31 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTI 95 (332)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHH
Confidence 68888773 33 33678899999998876532 211 1368999998887654
No 153
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=43.96 E-value=23 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=19.7
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCCeEEEE
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~~v~~~ 29 (247)
|||+|+-+ .||-..+++.+.+ +++++..+
T Consensus 14 mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~~I 45 (171)
T 4ici_A 14 SKILVAYFSATGTTARAAEKLGAAVGGDLYPI 45 (171)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCeEEE
Confidence 68988887 4677777766544 47776543
No 154
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=43.66 E-value=23 Score=25.11 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=41.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCC-CeEEEECCccC----C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 025812 2 VVGVLALQGSFN-EHIAALKRLG-VKGVEIRKPDQ----L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G-~~v~~~~~~~~----l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
+|.|++.+-.+. .+.+.|++.| +++..+.+.++ + ..+|.+|+-=..+. .+. ..+.+.|++.. ...|
T Consensus 16 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g----~~~~~~l~~~~-~~~~ 89 (135)
T 3snk_A 16 QVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD-LLG----KPGIVEARALW-ATVP 89 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG-GGG----STTHHHHHGGG-TTCC
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC-chH----HHHHHHHHhhC-CCCc
Confidence 677777544444 5678999999 99887766542 2 36898887211110 000 12334444432 2688
Q ss_pred EEEEeh
Q 025812 74 VWGTCA 79 (247)
Q Consensus 74 ilGIC~ 79 (247)
++-+..
T Consensus 90 ii~~s~ 95 (135)
T 3snk_A 90 LIAVSD 95 (135)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887764
No 155
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=43.57 E-value=23 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
|+|.|++.+-... .+.+.|+..|+++....+..+ -..+|.+++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~ 50 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIV 50 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 7888888544444 566889999999887776542 136898887
No 156
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.38 E-value=37 Score=24.07 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=43.7
Q ss_pred EEEEEecCCChH-HHHHHHHh-CCCeEEEECCccC----C---CCCCEEEECCCch-hHHHHHHhhCCHHHHHHHH-HHc
Q 025812 2 VVGVLALQGSFN-EHIAALKR-LGVKGVEIRKPDQ----L---QNVSSLIIPGGES-TTMARLAEYHNLFPALREF-VKM 70 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~-~G~~v~~~~~~~~----l---~~~d~lilpGG~~-~~~~~l~~~~~~~~~i~~~-~~~ 70 (247)
+|.|++.+-... .+.+.|++ .|+++..+.+.++ + ..+|.||+-=..+ . ++.+ .+.+.|++. ...
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~-~~g~----~~~~~l~~~~~~~ 80 (140)
T 3lua_A 6 TVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVE-KEGL----EVLSAIRNNSRTA 80 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSH-HHHH----HHHHHHHHSGGGT
T ss_pred eEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCC-CcHH----HHHHHHHhCcccC
Confidence 788887544444 56788998 8999988776531 2 4589999843222 1 1111 123445441 124
Q ss_pred CCcEEEEeh
Q 025812 71 GKPVWGTCA 79 (247)
Q Consensus 71 g~PilGIC~ 79 (247)
..|++-+..
T Consensus 81 ~~~ii~ls~ 89 (140)
T 3lua_A 81 NTPVIIATK 89 (140)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 789888774
No 157
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.12 E-value=1.2e+02 Score=23.95 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=40.2
Q ss_pred EEEEEecC--CChH-----HHHHHHHhCCCeEEEECCc--cC----------C--CC-CCEEEECCCchhHHHHHHhhCC
Q 025812 2 VVGVLALQ--GSFN-----EHIAALKRLGVKGVEIRKP--DQ----------L--QN-VSSLIIPGGESTTMARLAEYHN 59 (247)
Q Consensus 2 ~I~vl~~~--G~~~-----~~~~~L~~~G~~v~~~~~~--~~----------l--~~-~d~lilpGG~~~~~~~l~~~~~ 59 (247)
||||+..+ ..+. .+.+++++.|+++.+.... .+ + .. +|+||+.+...+.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~--------- 72 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED--------- 72 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT---------
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH---------
Confidence 68888742 2222 4667888889999887521 11 1 35 9999997732211
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 025812 60 LFPALREFVKMGKPVWGT 77 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGI 77 (247)
..+.++++.+.++|+.-+
T Consensus 73 ~~~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVV 90 (276)
T ss_dssp THHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 122334445568888765
No 158
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.81 E-value=19 Score=24.30 Aligned_cols=44 Identities=9% Similarity=-0.001 Sum_probs=30.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccCC------CCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQL------QNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l------~~~d~lilp 44 (247)
|+|.|++.+-... .+.+.|+..|+++..+.+.++. ..+|.+++-
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d 52 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMA 52 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEe
Confidence 5788887543333 5778899999998887765431 368988884
No 159
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=42.50 E-value=1.1e+02 Score=25.11 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=39.7
Q ss_pred EEEEEecC--CChH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ--GSFN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~--G~~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+..+ ..|. .+.+++++.|+++.+.....+ + ..+|+||+.+...+.. .+
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~---------~~ 75 (330)
T 3uug_A 5 SVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTL---------SD 75 (330)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGG---------HH
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhH---------HH
Confidence 57777743 2222 466788889999887653321 1 3799999976432211 22
Q ss_pred HHHHHHHcCCcEEEE
Q 025812 63 ALREFVKMGKPVWGT 77 (247)
Q Consensus 63 ~i~~~~~~g~PilGI 77 (247)
.++++.+.++|+.-+
T Consensus 76 ~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 76 VLKQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 334444567777654
No 160
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.37 E-value=36 Score=24.70 Aligned_cols=72 Identities=11% Similarity=-0.027 Sum_probs=43.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|.|++.+-... .+.+.|+..|+++..+.+..+ -..+|.+|+-=..+ +..+ +.+.|++. ...
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~-~~~ 79 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEV-------FLEQVAKS-YPD 79 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHH-------HHHHHHHH-CTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHH-------HHHHHHHh-CCC
Confidence 4677777544444 567889999999888776542 23589998832211 1111 23344442 247
Q ss_pred CcEEEEehh
Q 025812 72 KPVWGTCAG 80 (247)
Q Consensus 72 ~PilGIC~G 80 (247)
.|++-+..-
T Consensus 80 ~~ii~ls~~ 88 (154)
T 2rjn_A 80 IERVVISGY 88 (154)
T ss_dssp SEEEEEECG
T ss_pred CcEEEEecC
Confidence 888888754
No 161
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=41.97 E-value=21 Score=25.47 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=29.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
|+|.|++.+-... .+.+.|+..|+++..+.+.++ -..+|.+|+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 57 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLL 57 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 3677777544444 577889999999887776542 135788887
No 162
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=41.74 E-value=16 Score=25.22 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=29.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-... .+.+.|++.|+++....+.++ + ..+|.+++
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~ 55 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVL 55 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEE
Confidence 678877544344 577889999999887776543 1 35899887
No 163
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=41.27 E-value=1.3e+02 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=28.0
Q ss_pred EEEEEecC--CCh-H----HHHHHHHhCCCeEEEECCccC----CC-CCCEEEECCC
Q 025812 2 VVGVLALQ--GSF-N----EHIAALKRLGVKGVEIRKPDQ----LQ-NVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~--G~~-~----~~~~~L~~~G~~v~~~~~~~~----l~-~~d~lilpGG 46 (247)
+|||+..+ ..+ . .+.+++++.|+++.++....+ .. .+|+||+.+.
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 10 IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDW 66 (277)
T ss_dssp EEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECT
T ss_pred EEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecC
Confidence 58887642 222 2 455677888999887643221 11 7899998664
No 164
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=40.83 E-value=20 Score=26.24 Aligned_cols=70 Identities=13% Similarity=-0.022 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
+|.|++.+-.+. .+.+.|++.|+++..+.+.++ + ..+|.||+-=..+ +..+ +.+.|++. ....
T Consensus 16 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~-------~~~~l~~~-~~~~ 87 (153)
T 3hv2_A 16 EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPT-------LLARIHQQ-YPST 87 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHH-------HHHHHHHH-CTTS
T ss_pred eEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHH-------HHHHHHhH-CCCC
Confidence 688887544444 567899999999888776542 1 4689998822111 1111 23344442 2468
Q ss_pred cEEEEeh
Q 025812 73 PVWGTCA 79 (247)
Q Consensus 73 PilGIC~ 79 (247)
|++-+..
T Consensus 88 ~ii~~s~ 94 (153)
T 3hv2_A 88 TRILLTG 94 (153)
T ss_dssp EEEEECC
T ss_pred eEEEEEC
Confidence 8887764
No 165
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=40.33 E-value=14 Score=28.87 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CEEEEEecC--CChH----HHHHHHHh-CCCeEEEECCc----cCCCCCCEEEECC
Q 025812 1 MVVGVLALQ--GSFN----EHIAALKR-LGVKGVEIRKP----DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~--G~~~----~~~~~L~~-~G~~v~~~~~~----~~l~~~d~lilpG 45 (247)
|||.|+..+ ||-. .+.+.+++ .|+++.+++.. +++.++|+||+.-
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gs 60 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGS 60 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEE
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEe
Confidence 489888764 4433 35566676 78888776532 2467899999943
No 166
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=40.02 E-value=81 Score=27.33 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=31.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECC----------------------------ccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRK----------------------------PDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~----------------------------~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++. .+++.++|.+|++.|.
T Consensus 10 ~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 68888884 8776 45566666665 5555431 1246789999998874
No 167
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=40.01 E-value=43 Score=27.63 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
|||+||.. |. -..+++++++.|+++..+...+. + .++|.++.
T Consensus 3 ~~i~il~g-g~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~ 60 (306)
T 1iow_A 3 DKIAVLLG-GTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 (306)
T ss_dssp CEEEEECC-CSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEE
T ss_pred cEEEEEeC-CCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEE
Confidence 58999983 43 13688999999999998865431 2 35787765
No 168
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=39.99 E-value=61 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~ 31 (247)
+|.|+. .|.+. .-++.|.+.|++++++++
T Consensus 33 ~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 33 SVLVVG-GGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CEEEEC-CSHHHHHHHHHHGGGCCCEEEECS
T ss_pred EEEEEC-CCHHHHHHHHHHHHCCCEEEEECC
Confidence 455555 56666 466888889999988753
No 169
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=39.87 E-value=31 Score=29.17 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=29.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCc----------------cCCCCCCEEEE
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP----------------DQLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~----------------~~l~~~d~lil 43 (247)
|||+|+..+-......+.|++.|+++.+...+ +.+.++|+|+.
T Consensus 8 mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~ 66 (300)
T 2rir_A 8 LKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIIL 66 (300)
T ss_dssp CEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEe
Confidence 68988874333346778899999998765311 12457899987
No 170
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=39.84 E-value=77 Score=26.78 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=45.7
Q ss_pred EEEEEecC--CC------hHHHHHHHHhCCCeEEEECC--cc-------C-CCCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------Q-LQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~-l~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
|+.|+.++ |+ +..+.+.|++.|.++.++.. +. + .+++|.||..||..+..+-+
T Consensus 10 ~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~--------- 80 (304)
T 3s40_A 10 KVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECT--------- 80 (304)
T ss_dssp SEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHH---------
T ss_pred EEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHH---------
Confidence 68888774 32 23567889999998876532 21 1 24789999988866542221
Q ss_pred HHHHHH--cCCcEEEEehhHH-HHHHhh
Q 025812 64 LREFVK--MGKPVWGTCAGLI-FLANKA 88 (247)
Q Consensus 64 i~~~~~--~g~PilGIC~G~Q-lL~~~~ 88 (247)
..... .+.|+..|=+|-. .+++.+
T Consensus 81 -~~l~~~~~~~~l~iiP~Gt~N~~ar~l 107 (304)
T 3s40_A 81 -NGLAPLEIRPTLAIIPGGTCNDFSRTL 107 (304)
T ss_dssp -HHHTTCSSCCEEEEEECSSCCHHHHHT
T ss_pred -HHHhhCCCCCcEEEecCCcHHHHHHHc
Confidence 12222 3566665555554 455554
No 171
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=39.60 E-value=18 Score=32.50 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEE---ECCc-cC--------CCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~---~~~~-~~--------l~~~d~lilpGG~~ 48 (247)
.+...|++.|+++.. +.+. +. ++++|.||.+||..
T Consensus 211 ~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 211 ALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp HHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred HHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 577899999998764 3332 11 24689999999853
No 172
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=39.49 E-value=1.7e+02 Score=24.59 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=22.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (247)
|||||+...|... ..+++++..+++++-+
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav 33 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVAS 33 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEE
Confidence 4899999877655 5778888888877643
No 173
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=39.21 E-value=19 Score=26.56 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=42.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EECCccC----C--C--CCCEEEECCCch--hHHHHHHhhCCHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQ----L--Q--NVSSLIIPGGES--TTMARLAEYHNLFPALREFV 68 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~----l--~--~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~ 68 (247)
|+|.|++.+-... .+.+.|++.|++++ .+.+.++ + . .+|.||+-=..+ +..+ +.+.|++..
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-------~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-------CLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-------HHHHHHHHC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-------HHHHHHhhC
Confidence 4788887544444 56788999999987 6666542 1 2 679998832211 1111 234444432
Q ss_pred HcCCcEEEEeh
Q 025812 69 KMGKPVWGTCA 79 (247)
Q Consensus 69 ~~g~PilGIC~ 79 (247)
...|++-+..
T Consensus 110 -~~~~ii~ls~ 119 (157)
T 3hzh_A 110 -KNARVIMISA 119 (157)
T ss_dssp -TTCCEEEEES
T ss_pred -CCCcEEEEec
Confidence 4688887774
No 174
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=39.20 E-value=47 Score=23.61 Aligned_cols=43 Identities=5% Similarity=-0.065 Sum_probs=30.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C---CCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l---~~~d~lil 43 (247)
|+|.|++.+-.+. .+.+.|++.|+++..+.+..+ + ..+|.+|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~ 56 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILM 56 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEE
Confidence 4678887443344 577899999999888776532 1 46899988
No 175
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=39.04 E-value=1.1e+02 Score=24.26 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=30.2
Q ss_pred EEEEEecCC-C-hH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCc
Q 025812 2 VVGVLALQG-S-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGE 47 (247)
Q Consensus 2 ~I~vl~~~G-~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~ 47 (247)
+|||+..+- + |. .+.+++++.|+++.+.....+ + ..+|+||+.+..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 578877532 2 22 456788889999987654321 1 479999997643
No 176
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.79 E-value=16 Score=26.02 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=43.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCchh----HHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGEST----TMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~~----~~~~l~~~~~~~~~i~~~~~ 69 (247)
|+|.|++.+-... .+.+.|++.|+++..+.+..+ + ..+|.+|+--..+. ..+.+ .+.+.|++. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~----~~~~~l~~~-~ 78 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL----FWLHEIKRQ-Y 78 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH----HHHHHHHHH-C
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH----HHHHHHHhh-C
Confidence 3788887544444 567889999999888776542 1 35898888322110 00111 123344443 2
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
...|++.+..
T Consensus 79 ~~~~ii~ls~ 88 (140)
T 2qr3_A 79 RDLPVVLFTA 88 (140)
T ss_dssp TTCCEEEEEE
T ss_pred cCCCEEEEEC
Confidence 4788888874
No 177
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=38.55 E-value=9.8 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=27.9
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCC-eEEEEC--C--ccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGV-KGVEIR--K--PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~-~v~~~~--~--~~~l~~~d~lilpG 45 (247)
|||.|+-+ .||-..+++.+.+ ++. .+.++. . +.++.++|.||+.-
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l~~~d~ii~g~ 53 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGI 53 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHHHTCSEEEEEC
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHhhhCCEEEEEE
Confidence 89988876 4676666666554 232 333332 2 23567899999853
No 178
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.37 E-value=28 Score=24.39 Aligned_cols=73 Identities=11% Similarity=-0.000 Sum_probs=43.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECCccC----C---------CCCCEEEECCCch--hHHHHHHhhCCHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRKPDQ----L---------QNVSSLIIPGGES--TTMARLAEYHNLFP 62 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~~~----l---------~~~d~lilpGG~~--~~~~~l~~~~~~~~ 62 (247)
|+|.|++.+-... .+.+.|+..|. .+..+.+.++ + ..+|.+++--..+ +..+ +.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-------~~~ 75 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-------VLA 75 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-------HHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-------HHH
Confidence 5788888544444 57789999998 7777766432 1 4689999843221 1111 233
Q ss_pred HHHHHHH-cCCcEEEEehh
Q 025812 63 ALREFVK-MGKPVWGTCAG 80 (247)
Q Consensus 63 ~i~~~~~-~g~PilGIC~G 80 (247)
.|++... ...|++.+..-
T Consensus 76 ~l~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp HHHHSTTGGGSCEEEEESC
T ss_pred HHHcCcccccccEEEEecC
Confidence 4443211 36788887643
No 179
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=38.20 E-value=14 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=30.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccCC------CCCCEEEEC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQL------QNVSSLIIP 44 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l------~~~d~lilp 44 (247)
+|.|++.+-... .+.+.|+..|+++..+.+..+. ..+|.+|+-
T Consensus 10 ~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d 59 (147)
T 2zay_A 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITE 59 (147)
T ss_dssp EEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEc
Confidence 677877544444 6778899999998877765431 368999883
No 180
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=38.12 E-value=32 Score=28.52 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.8
Q ss_pred CEEEEEecCC--------ChHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQG--------SFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G--------~~~~~~~~L~~~G~~v~~~~ 30 (247)
|||+||..+- .-..++++++++|+++.++.
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d 39 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYME 39 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEc
Confidence 5999999531 12468899999999988764
No 181
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.07 E-value=85 Score=26.35 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=40.0
Q ss_pred EEEEEecC--C-ChH-----HHHHHHHhCCCeEEEECCccC-----------C---CCCCEEEECCCchhHHHHHHhhCC
Q 025812 2 VVGVLALQ--G-SFN-----EHIAALKRLGVKGVEIRKPDQ-----------L---QNVSSLIIPGGESTTMARLAEYHN 59 (247)
Q Consensus 2 ~I~vl~~~--G-~~~-----~~~~~L~~~G~~v~~~~~~~~-----------l---~~~d~lilpGG~~~~~~~l~~~~~ 59 (247)
+|+|+... . .|. .+.+++++.|+++.+.....+ + ..+|+||+.+... ..
T Consensus 5 ~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~-~~-------- 75 (350)
T 3h75_A 5 SVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY-VA-------- 75 (350)
T ss_dssp EEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-HH--------
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-hH--------
Confidence 68888753 2 122 456777888999887643211 1 3899999965221 11
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 025812 60 LFPALREFVKMGKPVWGTC 78 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC 78 (247)
.+.++++.+.++|+.-+.
T Consensus 76 -~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 76 -PQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp -HHHHHHHTTSCCEEEEEE
T ss_pred -HHHHHHHHhCCCcEEEEc
Confidence 123344445688887764
No 182
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=37.65 E-value=28 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=30.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C---CCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l---~~~d~lil 43 (247)
++|.|++.+-... .+.+.|+..|+++....+..+ + ..+|.+|+
T Consensus 16 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvil 66 (138)
T 2b4a_A 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIV 66 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEE
Confidence 4778887544444 566889999998887766432 2 45899887
No 183
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=37.54 E-value=27 Score=24.83 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=42.0
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCchhH-HHHHHhhCCHHHHHHHHHHcCCc
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKP 73 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~~~-~~~l~~~~~~~~~i~~~~~~g~P 73 (247)
+|.|++.+-... .+.+.|++.|+++....+.++ + ..+|.+|+-=..+.. ++.+ .+.+.|++.. ...|
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~----~~~~~l~~~~-~~~~ 82 (136)
T 3kto_A 8 IIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGI----ELLETLVKRG-FHLP 82 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHH----HHHHHHHHTT-CCCC
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHH----HHHHHHHhCC-CCCC
Confidence 678887544444 567889999999988776532 2 357888883222210 1111 1233444432 4688
Q ss_pred EEEEeh
Q 025812 74 VWGTCA 79 (247)
Q Consensus 74 ilGIC~ 79 (247)
++-+..
T Consensus 83 ii~~s~ 88 (136)
T 3kto_A 83 TIVMAS 88 (136)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 887764
No 184
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=37.41 E-value=38 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
....++|.++|+.+.+++..+++..++.||+|.=
T Consensus 428 ~~~y~al~~~g~~vd~v~~~~~l~~y~lvv~P~~ 461 (645)
T 1kwg_A 428 YLFYSALRRLGLDVDVVPPGASLRGYAFAVVPSL 461 (645)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCCTTCSEEEESCC
T ss_pred HHHHHHHHHhCCCeeEECCCCCcccCCEEEEech
Confidence 3567899999999999998888999999999984
No 185
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=37.28 E-value=22 Score=29.25 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=31.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC------c---------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------P---------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~---------~~l~~~d~lilpG 45 (247)
|+|+|......-..+.+.|++.|+++..+.. + .++.++|.||++-
T Consensus 7 ~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS 66 (254)
T 4es6_A 7 WRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVS 66 (254)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECS
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEEC
Confidence 5677776544455788999999998875431 1 1356899999985
No 186
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=37.05 E-value=61 Score=27.50 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=47.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCcc------------------------------CCCCCCEEEECCCchh
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD------------------------------QLQNVSSLIIPGGEST 49 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~------------------------------~l~~~d~lilpGG~~~ 49 (247)
|||+|+. -|+.. .+...|.+.|.+|..+..++ ++.++|.||+.=-..
T Consensus 20 ~kI~IiG-aGa~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavk~~- 97 (318)
T 3hwr_A 20 MKVAIMG-AGAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFCVKST- 97 (318)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEECCCGG-
T ss_pred CcEEEEC-cCHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEEEcccc-
Confidence 7999997 58888 46678888898887664321 134678888853222
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCcEEEEehhHHH
Q 025812 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 50 ~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
..+. ..+.|+.++..+.+++-++-|+-.
T Consensus 98 ~~~~------~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 98 DTQS------AALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp GHHH------HHHHHTTTSCTTCEEEEECSSSSH
T ss_pred cHHH------HHHHHHHhcCCCCEEEEeCCCCCc
Confidence 1111 234444555557788888877643
No 187
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=36.99 E-value=17 Score=25.86 Aligned_cols=71 Identities=4% Similarity=-0.135 Sum_probs=42.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccCC------CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQL------QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l------~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|||.|++.+-... .+.+.|++.|..+..+.+.++. ..+|.||+--..+ +..+ +.+.|++.. ..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~~-~~ 79 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLE-------MLDRIKAGG-AK 79 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHH-------HHHHHHHTT-CC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHH-------HHHHHHhcC-CC
Confidence 4788888544444 5778899988888888776431 3689998843221 1111 233344322 46
Q ss_pred CcEEEEeh
Q 025812 72 KPVWGTCA 79 (247)
Q Consensus 72 ~PilGIC~ 79 (247)
.|++.+..
T Consensus 80 ~~ii~~s~ 87 (137)
T 3hdg_A 80 PYVIVISA 87 (137)
T ss_dssp CEEEECCC
T ss_pred CcEEEEec
Confidence 78777764
No 188
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=36.98 E-value=33 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.3
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|||++++ ..|++..+.+.++... ++|.+|+.|
T Consensus 4 mri~~isDiHg~~~~l~~~l~~~~-------------~~d~ii~~G 36 (246)
T 3rqz_A 4 MRILIISDVHANLVALEAVLSDAG-------------RVDDIWSLG 36 (246)
T ss_dssp CCEEEECCCTTCHHHHHHHHHHHC-------------SCSEEEECS
T ss_pred cEEEEEeecCCCHHHHHHHHHhcc-------------CCCEEEECC
Confidence 8999998 5899988888777663 567788887
No 189
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=36.85 E-value=40 Score=28.26 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||+|+.- |.-..++++++++|+++..+...
T Consensus 3 m~Ililg~-g~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 3 VRIATYAS-HSALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp SEEEEESS-TTHHHHHHHHHHTTCCEEEESCG
T ss_pred eEEEEECC-hhHHHHHHHHHhCCCEEEEEECC
Confidence 68999984 45667899999999999887643
No 190
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=36.69 E-value=26 Score=31.64 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEE---ECCc-cC--------CCCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~---~~~~-~~--------l~~~d~lilpGG~ 47 (247)
.+...|++.|+++.. +.+. +. +.++|.||.+||.
T Consensus 208 ~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~ 253 (411)
T 1g8l_A 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV 253 (411)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSS
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCC
Confidence 577899999998764 3332 11 2468999999974
No 191
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=36.68 E-value=21 Score=29.94 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=30.1
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEECCcc------CCCCCCEEEE
Q 025812 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPD------QLQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~------~l~~~d~lil 43 (247)
|||+||. .|. -..+.++|++.|++++.+...+ .+.++|.++.
T Consensus 4 m~v~vl~-gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~ 61 (307)
T 3r5x_A 4 MRIGVIM-GGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALL 61 (307)
T ss_dssp EEEEEEE-CCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEE
T ss_pred cEEEEEe-CCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEE
Confidence 8999998 341 2257788999999998775431 2457898876
No 192
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.30 E-value=1.1e+02 Score=21.83 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=41.7
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEEC--Cc---cCCCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHH-
Q 025812 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIR--KP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-----~~~~~L~~~G~~v~~~~--~~---~~l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~- 69 (247)
|||.++=..|--. ...++.++.|.++.+.. .. +.++++|.++++- .-. ...+.+++..+
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgP--QV~--------y~~~~ik~~~~~ 76 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAP--QVR--------SYYREMKVDAER 76 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECG--GGG--------GGHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEECh--HHH--------HHHHHHHHHhhh
Confidence 6787777666433 34567777899888743 21 2356899999853 211 11334455444
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
.++|+.-|=.
T Consensus 77 ~~ipV~vI~~ 86 (108)
T 3nbm_A 77 LGIQIVATRG 86 (108)
T ss_dssp TTCEEEECCH
T ss_pred cCCcEEEeCH
Confidence 4899887753
No 193
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=36.22 E-value=18 Score=28.55 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=18.9
Q ss_pred CEEEEEecC----CChHHH----HHH-HHhCCCeEEEEC
Q 025812 1 MVVGVLALQ----GSFNEH----IAA-LKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~----G~~~~~----~~~-L~~~G~~v~~~~ 30 (247)
|||.|+... |+-..+ .+. +++.|+++++++
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~d 41 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIH 41 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 489888864 443333 344 566688887764
No 194
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=36.16 E-value=1.8e+02 Score=23.94 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=37.6
Q ss_pred EEEEEecCCC-hH-----HHHHHHHhC-CCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQGS-FN-----EHIAALKRL-GVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~G~-~~-----~~~~~L~~~-G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+....+ +. .+.+++++. |+++.+.....+ + ..+|+||+.+...+.. .+
T Consensus 8 ~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---------~~ 78 (325)
T 2x7x_A 8 RIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPM---------TP 78 (325)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHH---------HH
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH---------HH
Confidence 5888875433 22 244566677 999887643211 1 5799999976433211 11
Q ss_pred HHHHHHHcCCcEEEE
Q 025812 63 ALREFVKMGKPVWGT 77 (247)
Q Consensus 63 ~i~~~~~~g~PilGI 77 (247)
.++.+.+.++|+..+
T Consensus 79 ~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 79 IVEEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCeEEEe
Confidence 223333467787654
No 195
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=36.07 E-value=19 Score=28.97 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=29.7
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCe--EE---EECCc-cC--------CC--CCCEEEECCCc
Q 025812 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVK--GV---EIRKP-DQ--------LQ--NVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G-----~~~~~~~~L~~~G~~--v~---~~~~~-~~--------l~--~~d~lilpGG~ 47 (247)
|||+||... | |-..+.+.|++.|++ +. ++.+. +. ++ ++|.||.+||.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 478888853 2 222577899999987 33 33332 11 22 69999999974
No 196
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=36.07 E-value=74 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=46.2
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECC----------------------ccCC-CCCCEEEECCCchh---HHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK----------------------PDQL-QNVSSLIIPGGEST---TMAR 53 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~----------------------~~~l-~~~d~lilpGG~~~---~~~~ 53 (247)
|+|.++...|.--+ +.+.|.+.|++|...+. ++.+ .++|.||++-|.+. .+.+
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~ 99 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY 99 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence 46778887776554 67888888888876532 1123 46899998555321 1222
Q ss_pred HHh-hCCH---HHHHHHHHHcCCcEEEEehh
Q 025812 54 LAE-YHNL---FPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 54 l~~-~~~~---~~~i~~~~~~g~PilGIC~G 80 (247)
.++ .... .+++.+...+..|++||..-
T Consensus 100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGT 130 (524)
T 3hn7_A 100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGT 130 (524)
T ss_dssp HHHHTCCEEEHHHHHHHHTGGGSEEEEEECS
T ss_pred HHHCCCcEEEHHHHHHHHHhccCcEEEEECC
Confidence 211 1111 34555443456789999853
No 197
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.95 E-value=1.6e+02 Score=23.76 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=39.4
Q ss_pred EEEEEecCC-C-hH-----HHHHHHHhCCCeEEEECCcc---------CC--CCCCEEEECCCchhHHHHHHhhCCHHHH
Q 025812 2 VVGVLALQG-S-FN-----EHIAALKRLGVKGVEIRKPD---------QL--QNVSSLIIPGGESTTMARLAEYHNLFPA 63 (247)
Q Consensus 2 ~I~vl~~~G-~-~~-----~~~~~L~~~G~~v~~~~~~~---------~l--~~~d~lilpGG~~~~~~~l~~~~~~~~~ 63 (247)
+|||+..+- + |. .+.+++++.|+++.+....+ .+ ..+|+||+.+...+.. ...
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~---------~~~ 74 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG---------SAI 74 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGH---------HHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhh---------HHH
Confidence 688886432 2 22 45677888899988765421 11 4799999976432221 122
Q ss_pred HHHHHHcCCcEEEE
Q 025812 64 LREFVKMGKPVWGT 77 (247)
Q Consensus 64 i~~~~~~g~PilGI 77 (247)
++++.+.++|+.-+
T Consensus 75 ~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 75 VAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCcEEEe
Confidence 34445568887654
No 198
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=35.65 E-value=38 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~ 30 (247)
|+|+|+.. |.+. .+.+.|.+.|.+++++.
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d 34 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLID 34 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEE
Confidence 78999975 7777 57789999999988764
No 199
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=35.57 E-value=46 Score=23.60 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=42.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC--------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHc
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ--------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKM 70 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~--------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~ 70 (247)
||.|++.+-... .+.+.|++.|+++....+.++ -..+|.+|+-=..+ +..+ +.+.|++. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~-~~ 76 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD-------ILREIKKI-TP 76 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHH-------HHHHHHHH-CT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH-------HHHHHHHh-CC
Confidence 788887544444 577899999999888776532 24689998832211 1111 23344443 24
Q ss_pred CCcEEEEeh
Q 025812 71 GKPVWGTCA 79 (247)
Q Consensus 71 g~PilGIC~ 79 (247)
..|++-+..
T Consensus 77 ~~~ii~ls~ 85 (143)
T 3jte_A 77 HMAVIILTG 85 (143)
T ss_dssp TCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 688887764
No 200
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=35.41 E-value=61 Score=22.24 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=28.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-... .+...|+..|+++....+..+ + ..+|.+++
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~ 52 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILL 52 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEE
Confidence 677777544444 566789999999887765432 2 35798886
No 201
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=35.40 E-value=38 Score=29.19 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=30.9
Q ss_pred CEEEEEecCC-----ChHHHHHHHHhCCCeEEEECCccC---C--CCCCEEEECC
Q 025812 1 MVVGVLALQG-----SFNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G-----~~~~~~~~L~~~G~~v~~~~~~~~---l--~~~d~lilpG 45 (247)
|||+++...+ ....+.++|++.|.+|+++.. .. + ..+..+-+++
T Consensus 21 MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 21 MRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAGLEVVDVAP 74 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTTCEEEESST
T ss_pred CEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCCCeeEecCC
Confidence 8999998654 234789999999999998765 31 1 2345555554
No 202
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=34.69 E-value=46 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=25.7
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpG 45 (247)
|||.|+. ..|++..+.+.|+..+.+ .+.|.+|+.|
T Consensus 1 M~i~vigDiHG~~~~l~~ll~~~~~~----------~~~d~~v~lG 36 (280)
T 2dfj_A 1 MATYLIGDVHGCYDELIALLHKVEFT----------PGKDTLWLTG 36 (280)
T ss_dssp -CEEEECCCCSCHHHHHHHHHHTTCC----------TTTCEEEECS
T ss_pred CeEEEEecCCCCHHHHHHHHHHhCCC----------CCCCEEEEeC
Confidence 8898887 589999999999988742 2346666666
No 203
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=34.55 E-value=1.4e+02 Score=25.13 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=43.2
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCcc--C------------CCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--Q------------LQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--~------------l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|++++=+|++. ++.+++.+.|.-+.. +-+.. + -++.+.|++-+ |.++. ..
T Consensus 146 ~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~~--~~------ 217 (288)
T 1oi7_A 146 RVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEE--EA------ 217 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHH--HH------
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHH--HH------
Confidence 489999889988 678899887764432 22222 1 13567776644 33321 11
Q ss_pred HHHHHHHHHcCCcEEEEehhHHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.++++. ..+||++.++.|-.-
T Consensus 218 ~~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 1oi7_A 218 AAWVKD--HMKKPVVGFIGGRSA 238 (288)
T ss_dssp HHHHHH--HCCSCEEEEESCC--
T ss_pred HHHHHh--cCCCCEEEEEecCCC
Confidence 233333 579999999988544
No 204
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=34.46 E-value=1.5e+02 Score=26.83 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=47.1
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCc---------------------cCCCCCCEEEECCCchh--H-HHHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGEST--T-MARLA 55 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~lilpGG~~~--~-~~~l~ 55 (247)
|||.|+...|+=.+ +.+.|.+.|++|...+.. +.+..+|.+|++-+.+. . +...+
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s~~i~~~~p~~~~a~ 99 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAH 99 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTCCTTCHHHHHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHH
Confidence 47889998887665 889999999988875421 12346888888544321 1 11111
Q ss_pred h-hCCH---HHHHHHHHHcCCcEEEEehh
Q 025812 56 E-YHNL---FPALREFVKMGKPVWGTCAG 80 (247)
Q Consensus 56 ~-~~~~---~~~i~~~~~~g~PilGIC~G 80 (247)
+ .... .+.+.++. ...|+++|..-
T Consensus 100 ~~~ipvl~~~~~l~~~~-~~~~vI~VTGT 127 (491)
T 2f00_A 100 EARIPVIRRAEMLAELM-RFRHGIAIAGT 127 (491)
T ss_dssp HTTCCEEEHHHHHHHHH-TTSEEEEEESS
T ss_pred HcCCcEEEHHHHHHHHH-cCCCEEEEECC
Confidence 1 1111 34444444 34788998753
No 205
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=33.81 E-value=12 Score=27.59 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=29.8
Q ss_pred CEEEEEecCCCh-HHHHHHHHhCCCeEE-EECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSF-NEHIAALKRLGVKGV-EIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~-~~~~~~L~~~G~~v~-~~~~~~~------l~~~d~lil 43 (247)
|||.|++-+-.. ..+.+.|++.|++++ ...+.++ -..+|.+++
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 578888854433 367789999999976 4444331 157899987
No 206
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.74 E-value=1.5e+02 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=28.3
Q ss_pred EEEEEecCC----ChH-----HHHHHHHhCCCeEEEECCcc---C-------C--CCCCEEEECCC
Q 025812 2 VVGVLALQG----SFN-----EHIAALKRLGVKGVEIRKPD---Q-------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~G----~~~-----~~~~~L~~~G~~v~~~~~~~---~-------l--~~~d~lilpGG 46 (247)
+|||+...- .|. .+.+++++.|+++.+..... . + ..+|+||+.+.
T Consensus 10 ~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 10 VIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp EEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred EEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 477777531 222 35567777899988764321 1 2 57999999653
No 207
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.70 E-value=61 Score=22.43 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=29.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
||.|++-+-.+. .+...|++.|+++....+..+ -..+|.+++
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvll 52 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVL 52 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 678877544444 466789999999987776542 246898888
No 208
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.58 E-value=1.8e+02 Score=23.18 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=41.4
Q ss_pred EEEEEecC--CCh-H----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHHH
Q 025812 2 VVGVLALQ--GSF-N----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (247)
Q Consensus 2 ~I~vl~~~--G~~-~----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~~ 62 (247)
+|||+... ..| . .+.+++++.|+++.+.....+ + ..+|+||+.+...+.. ....+
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~------~~~~~ 90 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ------TPNIG 90 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC------CTTHH
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc------CCcHH
Confidence 57777643 222 2 466788889999988754321 1 5799999976432100 00123
Q ss_pred HHHHHHHcCCcEEEEe
Q 025812 63 ALREFVKMGKPVWGTC 78 (247)
Q Consensus 63 ~i~~~~~~g~PilGIC 78 (247)
.++++.+.++|+.-+.
T Consensus 91 ~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 91 YYLNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3445555788887664
No 209
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=33.57 E-value=37 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=30.0
Q ss_pred CEEEEEecCCChH-HHHHHHHh-CCCe-EEEECCccC----C--CCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKR-LGVK-GVEIRKPDQ----L--QNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~-~G~~-v~~~~~~~~----l--~~~d~lilp 44 (247)
|+|.|++.+-... .+.+.|++ .|++ +..+.+.++ + ..+|.+|+-
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d 61 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLD 61 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEe
Confidence 3677777444444 56788998 8999 777776542 1 468999884
No 210
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=33.38 E-value=1.1e+02 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=30.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECC-----------------------------ccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRK-----------------------------PDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~-----------------------------~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++. .+++.++|.+|++.|.
T Consensus 6 ~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 6 NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence 58898884 7776 45566666665 5554431 1246789999998874
No 211
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=33.31 E-value=26 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECC------c---------cCCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------P---------DQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~---------~~l~~~d~lilpG 45 (247)
|+|+|-.....-..+.+.|++.|+++..+.. + .++.++|.||++-
T Consensus 15 ~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS 74 (269)
T 3re1_A 15 WRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVS 74 (269)
T ss_dssp CEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECS
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEEC
Confidence 4677776555556789999999998875431 1 1357899999985
No 212
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=33.29 E-value=66 Score=28.09 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=44.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCc--cC------------CCCCCEEEE---CCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKP--DQ------------LQNVSSLII---PGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~--~~------------l~~~d~lil---pGG~~~~~~~l~~~~~~ 60 (247)
+|++++=+|++. ++.+++.+.|.-+.. +-+. .+ -++.+.|++ .||..+ ++ +
T Consensus 170 ~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e--~~------~ 241 (334)
T 3mwd_B 170 SVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE--YK------I 241 (334)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH--HH------H
T ss_pred CEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH--HH------H
Confidence 488999889887 677888877653332 2232 11 145677766 556643 11 2
Q ss_pred HHHHHHHHHcCCcEEEEehhHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Q 82 (247)
.+.+|+. ..+||++.++.|-.
T Consensus 242 ~~~~r~~-~~~KPVV~~kaGrs 262 (334)
T 3mwd_B 242 CRGIKEG-RLTKPIVCWCIGTC 262 (334)
T ss_dssp HHHHHTT-SCCSCEEEEEECTT
T ss_pred HHHHHhh-cCCCCEEEEEcCCC
Confidence 4555542 36899999998843
No 213
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=33.21 E-value=1.1e+02 Score=25.32 Aligned_cols=74 Identities=11% Similarity=0.166 Sum_probs=47.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC---eEEEECCc-c-------------------CCCCCCEEEECCCchhHHHHHHh
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV---KGVEIRKP-D-------------------QLQNVSSLIIPGGESTTMARLAE 56 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~---~v~~~~~~-~-------------------~l~~~d~lilpGG~~~~~~~l~~ 56 (247)
|||+|+.. |+.. .+...|.+.|. ++.+++.. + .+.++|.||+.= .+.....
T Consensus 4 ~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav-~p~~~~~--- 78 (280)
T 3tri_A 4 SNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV-KPHQIKM--- 78 (280)
T ss_dssp SCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS-CGGGHHH---
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe-CHHHHHH---
Confidence 58999985 8888 57889999998 77766421 0 135789988854 3333322
Q ss_pred hCCHHHHHHHH-HHcCCcEEEEehhHH
Q 025812 57 YHNLFPALREF-VKMGKPVWGTCAGLI 82 (247)
Q Consensus 57 ~~~~~~~i~~~-~~~g~PilGIC~G~Q 82 (247)
..+.|+.. +..+..++-++.|.-
T Consensus 79 ---vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 79 ---VCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp ---HHHHHHHHHHTTTCEEEECCTTCC
T ss_pred ---HHHHHHhhccCCCeEEEEecCCCC
Confidence 23445555 554556777777753
No 214
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=33.02 E-value=2.2e+02 Score=23.95 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=22.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (247)
|||||+...|... ..+++|+..+++++-+
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav 33 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSA 33 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4899999867655 5778888888877643
No 215
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=32.85 E-value=24 Score=24.98 Aligned_cols=70 Identities=9% Similarity=-0.095 Sum_probs=42.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EECCccC----C--CCCCEEEECCCc---hhHHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQ----L--QNVSSLIIPGGE---STTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~----l--~~~d~lilpGG~---~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
|+|.|++.+-... .+.+.|++.|+++. ...+.++ + ..+|.+|+-=.. .+..+ +.+.+++.
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~-------~~~~l~~~-- 80 (140)
T 3cg0_A 10 PGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVE-------TAARLAAG-- 80 (140)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHH-------HHHHHHHH--
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHH-------HHHHHHhC--
Confidence 4778877544444 56788999999988 4666542 1 368999883211 11121 23445554
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
...|++.++.
T Consensus 81 ~~~~ii~ls~ 90 (140)
T 3cg0_A 81 CNLPIIFITS 90 (140)
T ss_dssp SCCCEEEEEC
T ss_pred CCCCEEEEec
Confidence 5889988874
No 216
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=32.55 E-value=45 Score=28.09 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.3
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCcc------CCCCCCEEEECC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~------~l~~~d~lilpG 45 (247)
||+|+.--|+.. ++...|.+.|.++.++.... .+.++|.||+.=
T Consensus 23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilav 73 (298)
T 2pv7_A 23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSV 73 (298)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECS
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeC
Confidence 799997238887 67889999999988875321 246899999964
No 217
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=32.38 E-value=18 Score=31.53 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
+.++|.||+ ||+ +.+.+..|. ..-|++++.+. |+..||-
T Consensus 181 I~~AD~IvlgPGS~~TSI~P~Ll-----v~gi~~Al~~s-~kV~v~n 221 (311)
T 3c3d_A 181 FEKEENILIGPSNPITSIGPIIS-----LPGMRELLKKK-KVVAVSP 221 (311)
T ss_dssp HHHCCEEEECSSCTTTTSHHHHH-----STTHHHHHHTS-EEEEECC
T ss_pred HHhCCEEEECCCCCHHHHhhhcC-----chhHHHHHHcC-CEEEEcc
Confidence 568899999 666 445566663 23344455445 9999994
No 218
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.33 E-value=46 Score=22.55 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=29.4
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
+|.|++.+-... .+.+.|+..|+++....+..+ -..+|.+++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 51 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVIL 51 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 788887544444 567889999999887766532 136898887
No 219
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=31.98 E-value=44 Score=23.98 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred EEEEec--CCChHH----HHHHHHhCCCeEEEECCc----cCCCCCCEEEECC
Q 025812 3 VGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (247)
Q Consensus 3 I~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~~----~~l~~~d~lilpG 45 (247)
|.|+-+ .||-.. +.+.+++.|+++.+++-. +++.++|.||+..
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~ 54 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGC 54 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEEC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEc
Confidence 555554 466443 445666778888776532 2467899999854
No 220
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=31.79 E-value=75 Score=27.76 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=31.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCc--c----CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP--D----QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~--~----~l~~~d~lilpG 45 (247)
|||.|+.....-. .+.+++++.|+++...... + .+.++|+|++.+
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~ 53 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKP 53 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcC
Confidence 7999999655444 4556677789998876532 1 257899998865
No 221
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.73 E-value=42 Score=25.88 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=30.1
Q ss_pred CEEEEEecC-----CCh-----HHHHHHHHhC-----CCeEEE---ECCcc--------C-C--CCCCEEEECCCc
Q 025812 1 MVVGVLALQ-----GSF-----NEHIAALKRL-----GVKGVE---IRKPD--------Q-L--QNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~-----G~~-----~~~~~~L~~~-----G~~v~~---~~~~~--------~-l--~~~d~lilpGG~ 47 (247)
|||+||... |.. ..+.+.|++. |+++.. +.+.. + + .++|.||.+||.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 478888852 221 2456788888 987753 44331 1 2 379999999974
No 222
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=31.65 E-value=82 Score=27.42 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=29.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEEC-----------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIR-----------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~-----------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++ +.+++.++|.+|++.|.
T Consensus 22 ~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIitaG~ 99 (330)
T 3ldh_A 22 NKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGA 99 (330)
T ss_dssp CEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeCCC
Confidence 57888875 7766 35555555554 444432 22357789999998874
No 223
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=31.54 E-value=1.2e+02 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=21.8
Q ss_pred EEEEEecCCCh----------HHHHHHHHhCCCeEEEEC
Q 025812 2 VVGVLALQGSF----------NEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 2 ~I~vl~~~G~~----------~~~~~~L~~~G~~v~~~~ 30 (247)
+|+|++..+.. ..-++.|++.|++|++-.
T Consensus 7 ~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~ 45 (346)
T 4eys_A 7 TIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLP 45 (346)
T ss_dssp EEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECT
T ss_pred EEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECC
Confidence 79999976532 234678999999999853
No 224
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.43 E-value=56 Score=23.22 Aligned_cols=82 Identities=11% Similarity=-0.045 Sum_probs=44.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCe--EEEECCccC------CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHH-HHcC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVK--GVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREF-VKMG 71 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~--v~~~~~~~~------l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~-~~~g 71 (247)
+|.|++.+-... .+.+.|++.|.. +..+.+.++ -..+|.||+-=..+.. +.+ .+.+.|++. ....
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~-~g~----~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIA-NGF----EVMSAVRKPGANQH 81 (144)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGG-CHH----HHHHHHHSSSTTTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCC-CHH----HHHHHHHhcccccC
Confidence 677777544444 577899999987 555555432 2468998883322211 111 123334331 1146
Q ss_pred CcEEEEehh--HHHHHHhh
Q 025812 72 KPVWGTCAG--LIFLANKA 88 (247)
Q Consensus 72 ~PilGIC~G--~QlL~~~~ 88 (247)
.|++.+..- .....+++
T Consensus 82 ~pii~~s~~~~~~~~~~~~ 100 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCM 100 (144)
T ss_dssp CCEEEEETTCCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHH
Confidence 888888743 34444443
No 225
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.37 E-value=2e+02 Score=22.95 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCCc
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGE 47 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG~ 47 (247)
.+.+++++.|+++.+.....+ + ..+|+||+.+..
T Consensus 34 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp HHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 456788889999888654321 1 579999997643
No 226
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.26 E-value=1.9e+02 Score=23.45 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=29.0
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
+|||+... ++ +. .+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 4 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 68888753 33 11 355678888999887643211 1 47999999764
No 227
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.99 E-value=47 Score=23.58 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=29.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-.+. .+...|+..|+++....+.++ + ..+|.+++
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 54 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALIC 54 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 577777544444 566889999999888776542 1 46898887
No 228
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.96 E-value=2.1e+02 Score=23.02 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=38.7
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCC-eEEEECCccC----------C--CCCCEEEECCCchhHHHHHHhhCCHH
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGV-KGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLF 61 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~-~v~~~~~~~~----------l--~~~d~lilpGG~~~~~~~l~~~~~~~ 61 (247)
+|||+..+ .+ |. .+.+++++.|+ ++.+.....+ + ..+|+||+.+...+.. .
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~---------~ 74 (309)
T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA---------G 74 (309)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH---------H
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh---------H
Confidence 57887642 22 22 45677888898 8877643211 1 5799999976433211 1
Q ss_pred HHHHHHHHcCCcEEEEe
Q 025812 62 PALREFVKMGKPVWGTC 78 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC 78 (247)
+.++++.+.++|+.-+.
T Consensus 75 ~~~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 75 TVIEKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHCCCcEEEec
Confidence 12233334678877654
No 229
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=30.95 E-value=55 Score=27.94 Aligned_cols=32 Identities=25% Similarity=0.124 Sum_probs=25.1
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||+++...+. ...+.++|++.|.+|.++..+
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~ 38 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPP 38 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECH
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecCh
Confidence 99999986532 236889999999999987654
No 230
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=30.80 E-value=77 Score=30.69 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=48.7
Q ss_pred CEEEEEecCC-Ch--------HHHHHHHHhCCCeEEEECCccC-------CCCCCEEEECCCchh---HHHHHHhhCCHH
Q 025812 1 MVVGVLALQG-SF--------NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST---TMARLAEYHNLF 61 (247)
Q Consensus 1 m~I~vl~~~G-~~--------~~~~~~L~~~G~~v~~~~~~~~-------l~~~d~lilpGG~~~---~~~~l~~~~~~~ 61 (247)
|||.|++-+= .. ..+..+|++.|+++....+.++ -.++|++|+-=.-+. .++-+ .+.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~----~ll 76 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVR----QLI 76 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHH----HHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHH----HHH
Confidence 8999998653 44 5678899999999998877542 124899998322111 12211 134
Q ss_pred HHHHHHHHcCCcEEEEehhHH
Q 025812 62 PALREFVKMGKPVWGTCAGLI 82 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC~G~Q 82 (247)
+.||+. ..+.||+-+..=.+
T Consensus 77 ~~iR~~-~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 77 GKLHER-QQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHHH-STTCCEEEEECHHH
T ss_pred HHHHHh-CCCCCEEEEecCCc
Confidence 555543 23689998876443
No 231
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.66 E-value=49 Score=23.25 Aligned_cols=42 Identities=5% Similarity=-0.085 Sum_probs=28.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
+|.|++.+-.+. .+...|+..|+++....+..+ -..+|.+++
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 53 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALF 53 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 677777443344 567889989999887766432 146898887
No 232
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=30.63 E-value=43 Score=24.56 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEE-------C---CccCCCCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEI-------R---KPDQLQNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~-------~---~~~~l~~~d~lilpGG 46 (247)
.+.++-+++|+++.+- . +++++.++|++|+-+.
T Consensus 27 aL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d 69 (111)
T 2kyr_A 27 ALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVA 69 (111)
T ss_dssp HHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEES
T ss_pred HHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeC
Confidence 4667788899988761 1 2346788999999763
No 233
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=30.55 E-value=99 Score=23.39 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=44.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC-C-CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ-L-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~-l-~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGI 77 (247)
|+|.|++.+-... .+...|+..|++++...+..+ + ..+|.+++-=..+. ++.+ +.+.+++.. ...|++-+
T Consensus 13 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~dlvl~D~~mp~-~~g~-----l~~~~~~~~-~~~~ii~l 85 (196)
T 1qo0_D 13 LQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNR-HHDE-----IAALLAAGT-PRTTLVAL 85 (196)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSST-HHHH-----HHHHHHHSC-TTCEEEEE
T ss_pred CeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCCCCCCEEEEeCCCCc-cchH-----HHHHHhccC-CCCCEEEE
Confidence 4788887544444 566889989999887665443 2 35898887222111 1111 123333321 46788877
Q ss_pred ehh--HHHHHHhh
Q 025812 78 CAG--LIFLANKA 88 (247)
Q Consensus 78 C~G--~QlL~~~~ 88 (247)
..- ......++
T Consensus 86 t~~~~~~~~~~a~ 98 (196)
T 1qo0_D 86 VEYESPAVLSQII 98 (196)
T ss_dssp ECCCSHHHHHHHH
T ss_pred EcCCChHHHHHHH
Confidence 642 34444443
No 234
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=30.53 E-value=38 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=28.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCC--eEEEECCccC----C-------CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGV--KGVEIRKPDQ----L-------QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~~~----l-------~~~d~lil 43 (247)
+|.|++.+-... .+...|+..|. .+..+.+.++ + ..+|.||+
T Consensus 11 ~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~ 66 (146)
T 3ilh_A 11 SVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICI 66 (146)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEE
Confidence 677777443344 46688999998 6767766532 1 56899988
No 235
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=30.50 E-value=43 Score=26.20 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=30.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
|+|.|++.+-.+. .+...|+..|+++....+..+ -..+|.+++
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvll 57 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 57 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 5788887544444 567889999999887766542 146899987
No 236
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=30.25 E-value=1.5e+02 Score=26.65 Aligned_cols=78 Identities=8% Similarity=0.066 Sum_probs=45.6
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCc---------------------cCCCCCCEEEECCCchh--H-HHHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGEST--T-MARLA 55 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~lilpGG~~~--~-~~~l~ 55 (247)
|||.|+...|+=.+ +.+.|.+.|++|...+.. +.+..+|.+|++-+.+. . ....+
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s~~i~~~~~~~~~a~ 98 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSK 98 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHH
Confidence 46888888877665 888898899888765321 12456888888544321 1 11111
Q ss_pred h-hCCH---HHHHHHHHHcCCcEEEEeh
Q 025812 56 E-YHNL---FPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 56 ~-~~~~---~~~i~~~~~~g~PilGIC~ 79 (247)
+ .... .+.+.++.. ..|+++|..
T Consensus 99 ~~~i~vl~~~~~l~~~~~-~~~vI~VTG 125 (475)
T 1p3d_A 99 QKRIPVIQRAQMLAEIMR-FRHGIAVAG 125 (475)
T ss_dssp HTTCCEEEHHHHHHHHHH-TSEEEEEES
T ss_pred HcCCcEEEHHHHHHHHhc-CCCEEEEEC
Confidence 1 1111 344444443 468888875
No 237
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.05 E-value=49 Score=23.83 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=40.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCC--CeEEEECCccC------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLG--VKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G--~~v~~~~~~~~------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~ 69 (247)
|||.|++.+-.+. .+.+.|++.| ..+..+.+.++ -..+|.||+-=..+ +..+ +.+.|++. .
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~-------~~~~l~~~-~ 92 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLE-------VLEWIRSE-K 92 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHH-------HHHHHHHT-T
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHH-------HHHHHHHh-C
Confidence 4788888544444 5667888887 55666666542 24689998833211 1111 23334432 2
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
...|++.+..
T Consensus 93 ~~~~ii~ls~ 102 (150)
T 4e7p_A 93 LETKVVVVTT 102 (150)
T ss_dssp CSCEEEEEES
T ss_pred CCCeEEEEeC
Confidence 4688887774
No 238
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=30.04 E-value=53 Score=28.20 Aligned_cols=45 Identities=13% Similarity=-0.043 Sum_probs=30.4
Q ss_pred CEEEEEecCC--C---hHHHHHHHHhCCCeEEEECCccC---C--CCCCEEEECC
Q 025812 1 MVVGVLALQG--S---FNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G--~---~~~~~~~L~~~G~~v~~~~~~~~---l--~~~d~lilpG 45 (247)
|||+++...+ . ...+.++|++.|.+|+++..+.. + ..+..+-+++
T Consensus 16 MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~ 70 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCP 70 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEES
T ss_pred eEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCC
Confidence 8999988643 1 33788999999999998764321 1 2445555553
No 239
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=29.97 E-value=44 Score=25.98 Aligned_cols=71 Identities=15% Similarity=0.051 Sum_probs=42.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|.|++.+-.+. .+...|+..|+++....+..+ -..+|.+++-=..+ +..+ +.+.|++. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~-------~~~~lr~~-~~~ 74 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE-------ILKSMRES-GVN 74 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHH-------HHHHHHHT-TCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHH-------HHHHHHhc-CCC
Confidence 4788888544444 466889999999887766542 14689988732111 1111 13334432 147
Q ss_pred CcEEEEeh
Q 025812 72 KPVWGTCA 79 (247)
Q Consensus 72 ~PilGIC~ 79 (247)
.|++-+..
T Consensus 75 ~~ii~ls~ 82 (225)
T 1kgs_A 75 TPVLMLTA 82 (225)
T ss_dssp CCEEEEES
T ss_pred CCEEEEeC
Confidence 89988874
No 240
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=29.93 E-value=1.9e+02 Score=26.44 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCc------cC------------CCCCCEEEECC-CchhHHHHHHhhC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKP------DQ------------LQNVSSLIIPG-GESTTMARLAEYH 58 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~------~~------------l~~~d~lilpG-G~~~~~~~l~~~~ 58 (247)
+|++++-+|++. ++..++.+.|.-+.. +-+. .+ -.+.+.|++-+ +..+... +
T Consensus 114 ~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~--~--- 188 (480)
T 3dmy_A 114 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVR--L--- 188 (480)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHH--H---
T ss_pred CEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHH--H---
Confidence 589999999988 677889888764432 2233 11 13567777654 3322111 0
Q ss_pred CHHHHHHHHHHcCCcEEEEehhH
Q 025812 59 NLFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 59 ~~~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+.+..| +.+|||+.++.|-
T Consensus 189 ~f~~~ar---~~~KPVV~~k~Gr 208 (480)
T 3dmy_A 189 KIVNAMK---ATGKPTVALFLGY 208 (480)
T ss_dssp HHHHHHH---HHCSCEEEEETTC
T ss_pred HHHHHHH---hCCCCEEEEEeCC
Confidence 1233333 3699999999883
No 241
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=29.83 E-value=58 Score=25.83 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.2
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||+|++ ..|++..+.+.|+..+.. .+.|.||+.|-
T Consensus 13 ~~i~visDiHg~~~~l~~~l~~~~~~----------~~~d~~i~~GD 49 (221)
T 1g5b_A 13 RNIWVVGDLHGCYTNLMNKLDTIGFD----------NKKDLLISVGD 49 (221)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTCC----------TTTCEEEECSC
T ss_pred ceEEEEEcCCCCHHHHHHHHHHccCC----------CCCCEEEEeCC
Confidence 6888887 589999888888876531 25688888884
No 242
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=29.82 E-value=1.6e+02 Score=24.68 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=38.4
Q ss_pred hHHHHHHHHhCCCeEEEECCccC----CCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 12 FNEHIAALKRLGVKGVEIRKPDQ----LQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~~~----l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
.....+.+-..|+.+.....+++ +..+|.|++ +| ..++..+. +...++.+.+.++|+.
T Consensus 29 ~n~~AN~~La~GasP~M~~~~~e~~e~~~~a~alvIn~G~l~~~~~~~------~~~a~~~a~~~~~PvV 92 (273)
T 3dzv_A 29 CESMANALLYIDAKPIMADDPREFPQMFQQTSALVLNLGHLSQEREQS------LLAASDYARQVNKLTV 92 (273)
T ss_dssp HHHHHHHHHHTTCEEECCCCGGGHHHHHTTCSEEEEECCSCCHHHHHH------HHHHHHHHHHTTCCEE
T ss_pred hhhHHHHHHHcCCchhhcCCHHHHHHHHHHCCeEEEecCCCChHHHHH------HHHHHHHHHHcCCcEE
Confidence 34567889999999998877764 357899999 76 33322222 2445555556688875
No 243
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=29.75 E-value=2.1e+02 Score=22.70 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=28.3
Q ss_pred CEEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCcc----------C--CCCCCEEEECCC
Q 025812 1 MVVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPD----------Q--LQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~----------~--l~~~d~lilpGG 46 (247)
++|+|+..+ .+ |. .+.+++++.|+++.+..... . -..+|+||+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 368877643 22 22 35567788899988754321 1 146899999653
No 244
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=29.59 E-value=1.6e+02 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=28.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEE-EECC-c-------------cC---CCCCCEEEECCC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGV-EIRK-P-------------DQ---LQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~-~~~~-~-------------~~---l~~~d~lilpGG 46 (247)
|||+|+.. |+.. .+++.|++. +++++ +++. + ++ ..++|.+++.-.
T Consensus 10 irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~~~~DvViiatp 74 (304)
T 3bio_A 10 IRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQLESVDVALVCSP 74 (304)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGSSSCCEEEECSC
T ss_pred CEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhCCCCCEEEECCC
Confidence 37899986 7776 567777764 66665 2221 1 11 247899999764
No 245
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.57 E-value=40 Score=25.43 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=27.6
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCC-eEEEEC--C--ccCCCCCCEEEEC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGV-KGVEIR--K--PDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~-~v~~~~--~--~~~l~~~d~lilp 44 (247)
|||.|+-+ .||-..+++.+.+ ++. ++.+++ . .+++.++|.||+.
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l~~~d~ii~g 53 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIG 53 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGGGGCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHHhhCCEEEEE
Confidence 78888876 4676666665544 232 344433 2 2357789999984
No 246
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=29.55 E-value=29 Score=31.16 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCeEEE---ECCc-cC--------CCCCCEEEECCCch
Q 025812 14 EHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGES 48 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~---~~~~-~~--------l~~~d~lilpGG~~ 48 (247)
.+...|++.|+++.. +.+. +. ++++|.||.+||..
T Consensus 215 ~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 215 MLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 577899999998764 3332 11 24689999999853
No 247
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=29.52 E-value=43 Score=23.51 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=29.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--C-CCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--Q-NVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~-~~d~lil 43 (247)
+|.|++.+-... .+.+.|++.|+++..+.+..+ + . .+|.||+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~ 58 (136)
T 3hdv_A 9 LVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMIT 58 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEE
Confidence 677777544444 567899999999988776542 1 2 3888888
No 248
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.42 E-value=69 Score=21.99 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=30.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
||.|++.+-... .+...|+..|+++....+.++ -..+|.+++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~ 52 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILL 52 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 677887544444 466789999999888776542 246899888
No 249
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=29.37 E-value=1.5e+02 Score=22.26 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=43.6
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEECCcc-------CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
+|.++...++.. .+...|.+.|..+..+.+.+ .+.+-|.+|+ +- |.... ..+.++.+.+
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~---------~~~~~~~ak~ 121 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSE---------ITALIPVLKR 121 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHH---------HHHHHHHHHT
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 355665433332 45567777898887765432 2455677665 33 43321 1344455556
Q ss_pred cCCcEEEEeh-hHHHHHHh
Q 025812 70 MGKPVWGTCA-GLIFLANK 87 (247)
Q Consensus 70 ~g~PilGIC~-G~QlL~~~ 87 (247)
+|.++++|+. ...-|++.
T Consensus 122 ~g~~vi~IT~~~~s~la~~ 140 (183)
T 2xhz_A 122 LHVPLICITGRPESSMARA 140 (183)
T ss_dssp TTCCEEEEESCTTSHHHHH
T ss_pred CCCCEEEEECCCCChhHHh
Confidence 7999999985 33344443
No 250
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.26 E-value=1.4e+02 Score=22.47 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=39.3
Q ss_pred EEEEecCCChH---HHHHHHHhCCCeEEEECCcc--CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 025812 3 VGVLALQGSFN---EHIAALKRLGVKGVEIRKPD--QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 3 I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~--~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
|.++...++.. .+...|.+.|..+..+.+.. .+.+-|.+|+ +- |.... ..+.++.+.++|.|++
T Consensus 43 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~---------~~~~~~~ak~~g~~vi 113 (180)
T 1jeo_A 43 IFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTES---------VLTVAKKAKNINNNII 113 (180)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHH---------HHHHHHHHHTTCSCEE
T ss_pred EEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHH---------HHHHHHHHHHCCCcEE
Confidence 44555433322 45567778898877764432 3455576655 32 44321 1344455556799999
Q ss_pred EEeh
Q 025812 76 GTCA 79 (247)
Q Consensus 76 GIC~ 79 (247)
+|+.
T Consensus 114 ~IT~ 117 (180)
T 1jeo_A 114 AIVC 117 (180)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9985
No 251
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.08 E-value=77 Score=23.91 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=29.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
+|.|++-+-.+. .+...|++.|+++....+..+ -..+|.+++
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 57 (184)
T 3rqi_A 9 NFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITV 57 (184)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 677777443344 567889999999887776542 246898887
No 252
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=28.79 E-value=1.6e+02 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=21.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~ 30 (247)
.||+||. .|... .+..+++++|++++.++
T Consensus 2 K~I~ilG-gg~~g~~~~~~Ak~~G~~vv~vd 31 (363)
T 4ffl_A 2 KTICLVG-GKLQGFEAAYLSKKAGMKVVLVD 31 (363)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEe
Confidence 0578876 45443 68889999999998875
No 253
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.64 E-value=55 Score=23.18 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=29.0
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-.+. .+.+.|+..|+++....+..+ + ..+|.+|+
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~ 53 (138)
T 3c3m_A 5 TILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLL 53 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEE
Confidence 677777443344 567889999999887766432 1 36898887
No 254
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=28.52 E-value=95 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=31.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEEC-------CccC-------C-CCCCEEEECC
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-------KPDQ-------L-QNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-------~~~~-------l-~~~d~lilpG 45 (247)
|+|+|..... -..+.+.|++.|+++..+. +.++ + .++|.||++-
T Consensus 9 ~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS 67 (261)
T 1wcw_A 9 VRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATT 67 (261)
T ss_dssp CEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECC
T ss_pred CEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeC
Confidence 5788887554 5578899999999876432 1222 3 3799999986
No 255
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=28.50 E-value=1.1e+02 Score=26.43 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=29.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC-eEEEEC------------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV-KGVEIR------------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~-~v~~~~------------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++. ++...|...|. ++..++ +.+++.++|.+|++.|.
T Consensus 8 ~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIiaag~ 85 (324)
T 3gvi_A 8 NKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAGV 85 (324)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEccCc
Confidence 47777774 6665 45555666665 554432 22346789999998773
No 256
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=28.49 E-value=2.3e+02 Score=22.93 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=29.1
Q ss_pred EEEEEecC--CCh-H----HHHHHHHhCCCeEEEECCccC------------CCCCCEEEECCC
Q 025812 2 VVGVLALQ--GSF-N----EHIAALKRLGVKGVEIRKPDQ------------LQNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~--G~~-~----~~~~~L~~~G~~v~~~~~~~~------------l~~~d~lilpGG 46 (247)
+|||+..+ ..| . .+.+++++.|+++.+.....+ -..+|+||+.+.
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 17 TIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 37777642 222 2 456788889999887653321 157999999764
No 257
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.48 E-value=2.2e+02 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred EEEEEecC-CC-h-----HHHHHHHHhCCCeEEEECCccC------------CCCCCEEEECCC
Q 025812 2 VVGVLALQ-GS-F-----NEHIAALKRLGVKGVEIRKPDQ------------LQNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~-~-----~~~~~~L~~~G~~v~~~~~~~~------------l~~~d~lilpGG 46 (247)
+|||+..+ .+ + ..+.+++++.|+++.+.....+ -..+|+||+.+.
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 57877743 22 2 2456778889999887654321 157999999764
No 258
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.16 E-value=1.7e+02 Score=23.57 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=39.5
Q ss_pred EEEEEecCC-C-hH-----HHHHHHHhCCCeEEEECCcc--C----------C--CCCCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQG-S-FN-----EHIAALKRLGVKGVEIRKPD--Q----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G-~-~~-----~~~~~L~~~G~~v~~~~~~~--~----------l--~~~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|||+...- + +. .+.+++++.|+++.+..... + + ..+|+||+.+...+..
T Consensus 7 ~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~--------- 77 (304)
T 3o1i_D 7 KICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAY--------- 77 (304)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSS---------
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHH---------
Confidence 588877432 2 22 45677888899988865432 2 1 3799999976433211
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025812 61 FPALREFVKMGKPVWGT 77 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGI 77 (247)
.+.++++. .++|+.-+
T Consensus 78 ~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp TTTHHHHT-TTSCEEEC
T ss_pred HHHHHHHc-CCCCEEEe
Confidence 11233444 68888776
No 259
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=27.90 E-value=1.3e+02 Score=25.73 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=43.2
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCcc--C------------CCCCCEEEECC---CchhH-HHHHHhhCC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--Q------------LQNVSSLIIPG---GESTT-MARLAEYHN 59 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--~------------l~~~d~lilpG---G~~~~-~~~l~~~~~ 59 (247)
+|++++=+|++. ++..++.+.|.-+.. +-+.. + -++.+.|++-+ |.++. ..+
T Consensus 154 ~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~------ 227 (305)
T 2fp4_A 154 RIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAE------ 227 (305)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHH------
T ss_pred CEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHH------
Confidence 489999899988 678899888764432 22221 1 14567776643 44321 111
Q ss_pred HHHHHHHHHHcCCcEEEEehhH
Q 025812 60 LFPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 60 ~~~~i~~~~~~g~PilGIC~G~ 81 (247)
+.+..++ ..++||+..++.|-
T Consensus 228 f~~~~~~-~~~~KPVv~~k~G~ 248 (305)
T 2fp4_A 228 FLKQHNS-GPKSKPVVSFIAGL 248 (305)
T ss_dssp HHHHHSC-STTCCCEEEEEECT
T ss_pred HHHHHHH-hcCCCCEEEEEecC
Confidence 2222222 34589999999873
No 260
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=27.89 E-value=30 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=14.0
Q ss_pred CEEEEEecC----CChHHHHHHHHh
Q 025812 1 MVVGVLALQ----GSFNEHIAALKR 21 (247)
Q Consensus 1 m~I~vl~~~----G~~~~~~~~L~~ 21 (247)
|||.|+... |+-..+.+++.+
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~ 28 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ 28 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc
Confidence 789888864 665567776654
No 261
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=27.61 E-value=58 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (247)
|||.|..-.|.+. .+++.|.+.|++++.+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAI 30 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Confidence 8988888667777 6889999999998765
No 262
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=27.34 E-value=41 Score=27.03 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=46.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
|+|.|++.+-.+. .+...|+..|+++....+.++ + ..+|.+|+-=..+ +..+ +.+.|++. ...
T Consensus 24 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~-------~~~~lr~~-~~~ 95 (250)
T 3r0j_A 24 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFG-------VLRRLRAD-GID 95 (250)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHH-------HHHHHHHT-TCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhc-CCC
Confidence 4788888544444 566889999999887776542 1 3689998821111 1111 12334332 136
Q ss_pred CcEEEEehhH--HHHHHhh
Q 025812 72 KPVWGTCAGL--IFLANKA 88 (247)
Q Consensus 72 ~PilGIC~G~--QlL~~~~ 88 (247)
.|++-+..-. +....++
T Consensus 96 ~~ii~lt~~~~~~~~~~~~ 114 (250)
T 3r0j_A 96 APALFLTARDSLQDKIAGL 114 (250)
T ss_dssp CCEEEEECSTTHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHH
Confidence 8888877532 4444444
No 263
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=27.31 E-value=2.6e+02 Score=23.30 Aligned_cols=76 Identities=13% Similarity=-0.039 Sum_probs=42.6
Q ss_pred EEEEEecCCChH---HHHHHHHh-C-CCeEEEECCccCCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 025812 2 VVGVLALQGSFN---EHIAALKR-L-GVKGVEIRKPDQLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPV 74 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~-~-G~~v~~~~~~~~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (247)
+|.|+...++.. .....|+. . |..+....+.+.+.+-|.+|. +- |.... ..+.++.+.++|.++
T Consensus 39 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e---------~~~a~~~ak~~g~~~ 109 (302)
T 1tzb_A 39 RLYISGMGGSGVVADLIRDFSLTWNWEVEVIAVKDYFLKARDGLLIAVSYSGNTIE---------TLYTVEYAKRRRIPA 109 (302)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHTTCSSEEEEECSSCCCCSSSEEEEECSSSCCHH---------HHHHHHHHHHTTCCE
T ss_pred EEEEEEecHHHHHHHHHHHHHHhhcCCceEEEeCCcCCCCCCCEEEEEeCCCCCHH---------HHHHHHHHHHCCCeE
Confidence 355555433333 34456654 5 777776655444456677665 33 43311 134445555679999
Q ss_pred EEEehhHHHHHHh
Q 025812 75 WGTCAGLIFLANK 87 (247)
Q Consensus 75 lGIC~G~QlL~~~ 87 (247)
++||... -|++.
T Consensus 110 iaIT~~~-~La~~ 121 (302)
T 1tzb_A 110 VAITTGG-RLAQM 121 (302)
T ss_dssp EEEESST-TGGGS
T ss_pred EEECCCc-hHHHC
Confidence 9999765 44443
No 264
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.22 E-value=2e+02 Score=21.66 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=43.5
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEEC-Ccc-------CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHH
Q 025812 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIR-KPD-------QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFV 68 (247)
Q Consensus 2 ~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~-~~~-------~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~ 68 (247)
+|.++...++.. .+...|.+.|..+..+. +.. .+.+-|.+|+ +- |.... ..+.++.+.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~---------~~~~~~~ak 111 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRD---------TVAALAGAA 111 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHH---------HHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHH---------HHHHHHHHH
Confidence 466777654443 46678888999988877 332 3455677665 33 44321 134455566
Q ss_pred HcCCcEEEEeh
Q 025812 69 KMGKPVWGTCA 79 (247)
Q Consensus 69 ~~g~PilGIC~ 79 (247)
++|.|+++|+.
T Consensus 112 ~~g~~vi~IT~ 122 (187)
T 3sho_A 112 ERGVPTMALTD 122 (187)
T ss_dssp HTTCCEEEEES
T ss_pred HCCCCEEEEeC
Confidence 68999999985
No 265
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=27.22 E-value=57 Score=23.09 Aligned_cols=43 Identities=5% Similarity=-0.042 Sum_probs=28.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
++|.|++.+-.+. .+...|+..|+++..+.+..+ -..+|.+++
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvll 54 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFL 54 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 3677777443333 567888888998887766432 136898887
No 266
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=27.19 E-value=1.9e+02 Score=21.84 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCeEEEECCcc--CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEehh-HHHHHHh
Q 025812 14 EHIAALKRLGVKGVEIRKPD--QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG-LIFLANK 87 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~--~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~G-~QlL~~~ 87 (247)
.+...|.+.|..+..+.+.. .+.+-|.+|+ +- |.... ..+.++.+.++|.|+++|+.- .--|++.
T Consensus 54 ~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~---------~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ 123 (186)
T 1m3s_A 54 SFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKS---------LIHTAAKAKSLHGIVAALTINPESSIGKQ 123 (186)
T ss_dssp HHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHH---------HHHHHHHHHHTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHH---------HHHHHHHHHHCCCEEEEEECCCCCchHHh
Confidence 45567788898877764432 2455576655 33 44321 134455666689999999863 3334443
No 267
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=27.07 E-value=1.3e+02 Score=23.17 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=21.7
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||++++ ..++...+.+.++... -.++|.||+.|-
T Consensus 6 mri~~iSD~H~~~~~~~~~~~~~~-----------~~~~D~vi~~GD 41 (228)
T 1uf3_A 6 RYILATSNPMGDLEALEKFVKLAP-----------DTGADAIALIGN 41 (228)
T ss_dssp CEEEEEECCTTCHHHHHHHHTHHH-----------HHTCSEEEEESC
T ss_pred EEEEEEeeccCCHHHHHHHHHHHh-----------hcCCCEEEECCC
Confidence 6898888 4677655444433210 026789999984
No 268
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.91 E-value=2.5e+02 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=28.6
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
+|+|+..+ .+ |. .+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 18 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 18 TVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 57887643 22 22 456778889999887643211 1 57999999663
No 269
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=26.85 E-value=1e+02 Score=27.79 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=22.5
Q ss_pred CCCCCCEEEECCCchh---HHHHHHh-hCC---HHHHHHHHHHc-CCcEEEEeh
Q 025812 34 QLQNVSSLIIPGGEST---TMARLAE-YHN---LFPALREFVKM-GKPVWGTCA 79 (247)
Q Consensus 34 ~l~~~d~lilpGG~~~---~~~~l~~-~~~---~~~~i~~~~~~-g~PilGIC~ 79 (247)
.+.++|.||.+-|.+. .....++ ... ..+.+.+.... ..|+++|..
T Consensus 68 ~~~~~d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~~vI~VTG 121 (469)
T 1j6u_A 68 NWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLKREKKEEFAVTG 121 (469)
T ss_dssp SCCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHHHHHCCCEEEEEC
T ss_pred HCCCCCEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHHhccCCCEEEEEC
Confidence 4557899999555321 1222211 111 13344444321 578888875
No 270
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=26.78 E-value=1.1e+02 Score=26.74 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=32.4
Q ss_pred CEEEEEecCCChH---------------HHHHHHHhCCCeEEEECCcc--------CCCCCCEEEECC
Q 025812 1 MVVGVLALQGSFN---------------EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G~~~---------------~~~~~L~~~G~~v~~~~~~~--------~l~~~d~lilpG 45 (247)
|||..+-+.|.-. .+.+.|++.|+++++..... .+.++|+||...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~ 70 (351)
T 3jtm_A 3 KKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTP 70 (351)
T ss_dssp CEEEEECCCCTHHHHHCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECT
T ss_pred ceEEEEEeccccccccCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEcc
Confidence 7886666666433 57899999999998875431 267899988743
No 271
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=26.74 E-value=52 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=28.0
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCC--eEEEEC----CccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGV--KGVEIR----KPDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~--~v~~~~----~~~~l~~~d~lilpG 45 (247)
|||.|+-+ .||-..+++.+.+ ++. ++.+++ +..++.++|.||+.-
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~~~d~ii~g~ 54 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGC 54 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGGGCSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHhhCCEEEEEe
Confidence 78888876 4666666655544 233 355443 234678899999843
No 272
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=26.63 E-value=1.6e+02 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=29.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC-eEEEEC------------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV-KGVEIR------------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~-~v~~~~------------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+. -|++. ++...|...|. ++..++ +.+++.++|.+|++.|.
T Consensus 6 ~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 6 KKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 4788887 47665 45566666555 554432 22346789999998763
No 273
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.54 E-value=2e+02 Score=23.67 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=38.4
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEECCccC----------C--CC--CCEEEECCCchhHHHHHHhhCCH
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QN--VSSLIIPGGESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~--~d~lilpGG~~~~~~~l~~~~~~ 60 (247)
+|||+... .+ +. .+.+++++.|+++.+.....+ + .. +|+||+.+...+..
T Consensus 7 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~--------- 77 (332)
T 2rjo_A 7 TLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADA--------- 77 (332)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH---------
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH---------
Confidence 58887742 22 22 456677888999887643211 1 36 99999976433211
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 025812 61 FPALREFVKMGKPVWGTC 78 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC 78 (247)
.+.++++.+.++|+..+.
T Consensus 78 ~~~~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 78 RVIVEACSKAGAYVTTIW 95 (332)
T ss_dssp HHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHCCCeEEEEC
Confidence 112233334578876553
No 274
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.42 E-value=59 Score=22.59 Aligned_cols=43 Identities=12% Similarity=-0.072 Sum_probs=28.8
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEECCccC----C--CCCCEEEEC
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilp 44 (247)
|+|.|++.+-.... +...|+ .|+++....+.++ + ..+|.+|+-
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d 54 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISD 54 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEe
Confidence 36888885544554 445666 8899888776542 1 468999883
No 275
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=26.12 E-value=37 Score=26.93 Aligned_cols=29 Identities=14% Similarity=-0.072 Sum_probs=24.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~ 30 (247)
|||.|+.. |.+. .+.+.|.+.|.+++++.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid 30 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIIN 30 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEE
Confidence 89999985 7777 67899999999988765
No 276
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.97 E-value=60 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.4
Q ss_pred EEEEecCCChHHHHHHHHhC-CCeEEEECC
Q 025812 3 VGVLALQGSFNEHIAALKRL-GVKGVEIRK 31 (247)
Q Consensus 3 I~vl~~~G~~~~~~~~L~~~-G~~v~~~~~ 31 (247)
+++++-+|+|..+++.|++. |.+|.++..
T Consensus 112 ~vLvSgD~DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 112 VILVSGDGDFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp EEEECCCGGGHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEEECChhHHHHHHHHHHHcCcEEEEEeC
Confidence 56777789999999999995 999987754
No 277
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=25.88 E-value=68 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=23.2
Q ss_pred CEEEEEecCC--ChH-HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQG--SFN-EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G--~~~-~~~~~L~~~G~~v~~~~ 30 (247)
|||+|-.-.. .+. .+.++|++.|++|+-+-
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 34 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKG 34 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTTCEEEECC
T ss_pred cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 7999887554 344 57889999999988664
No 278
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=25.86 E-value=1.9e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.3
Q ss_pred EEEEEecCCChH-HHHHHHHhC-CCeEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRL-GVKGVE 28 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~-G~~v~~ 28 (247)
||+|+.. |+.. .+++.|.+. +++++-
T Consensus 6 rvgiiG~-G~~g~~~~~~l~~~~~~~l~a 33 (344)
T 3euw_A 6 RIALFGA-GRIGHVHAANIAANPDLELVV 33 (344)
T ss_dssp EEEEECC-SHHHHHHHHHHHHCTTEEEEE
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCcEEEE
Confidence 7999986 7665 466777776 666663
No 279
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=25.83 E-value=78 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=10.1
Q ss_pred HHHHHHHHH-cCCcEEE
Q 025812 61 FPALREFVK-MGKPVWG 76 (247)
Q Consensus 61 ~~~i~~~~~-~g~PilG 76 (247)
.+.++++.+ .++|+.+
T Consensus 68 ~~~l~~~~~~~~kPVia 84 (240)
T 3rst_A 68 HKKLEEIKKETKKPIYV 84 (240)
T ss_dssp HHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHhCCCeEEE
Confidence 445555544 5899874
No 280
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=25.67 E-value=79 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=16.5
Q ss_pred CEEEEEe-cCCChHHHHHHHHhC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRL 22 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~ 22 (247)
|||++++ ..|+...+.+.++..
T Consensus 7 m~i~~isD~H~~~~~~~~~~~~~ 29 (176)
T 3ck2_A 7 QTIIVMSDSHGDSLIVEEVRDRY 29 (176)
T ss_dssp EEEEEECCCTTCHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHh
Confidence 5899988 478887777777654
No 281
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=25.67 E-value=76 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=22.6
Q ss_pred CEEEEEecCC--ChH-HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQG--SFN-EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G--~~~-~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|-.-.. .+. .+.++|++.|++|+-+..
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCC
Confidence 7998877433 233 578899999999886643
No 282
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=25.61 E-value=49 Score=22.45 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
|+|.|++.+-.+. .+.+.|+..|+++....+..+ + ..+|.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 51 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIIL 51 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 4788887544444 566788888998877665432 1 35798886
No 283
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.53 E-value=2.4e+02 Score=22.72 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCeEEEECCcc----------CC--CCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~----------~l--~~~d~lilpGG 46 (247)
.+.+++++.|+.+.+..... .+ ..+|+||+.+.
T Consensus 33 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 33 GISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp HHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred HHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 45678888899988765432 11 57999999764
No 284
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=25.50 E-value=68 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=29.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccCC------CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQL------QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l------~~~d~lil 43 (247)
+|.|++.+-.+. .+...|+..|+++..+.+..+. ..+|.+|+
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvil 55 (238)
T 2gwr_A 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLL 55 (238)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 677777444444 5668899999998877765531 36899887
No 285
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=25.47 E-value=67 Score=24.92 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (247)
|||.|..-.|.+. .+++.|.+.|++++.+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAV 30 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEE
Confidence 8988887667777 6888999999998765
No 286
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.35 E-value=2.6e+02 Score=22.34 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCeEEEECCccC------------CCCCCEEEECCC
Q 025812 14 EHIAALKRLGVKGVEIRKPDQ------------LQNVSSLIIPGG 46 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~------------l~~~d~lilpGG 46 (247)
.+.+++++.|+++.+.....+ -..+|+||+.+.
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred HHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 455678888999887643211 147899999663
No 287
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=25.25 E-value=32 Score=30.27 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEeh
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTCA 79 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC~ 79 (247)
+.++|.||+ ||+ +.+.++.|. ..-|++++. ..-|...||.
T Consensus 186 I~~AD~IvlgPGSlyTSI~P~Ll-----v~gi~~Ai~~s~A~kV~V~N 228 (341)
T 2p0y_A 186 IMAADQIVLGPGSLFTSILPNLT-----IGNIGRAVCESDAEVVYICN 228 (341)
T ss_dssp HHHCSEEEECSSCCCCCCHHHHS-----SHHHHHHHHHCSSEEEEECC
T ss_pred HHhCCEEEECCCCCHHHhccccc-----CccHHHHHHhCCCCEEEEeC
Confidence 468899999 666 445565552 333444443 4679999996
No 288
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=25.11 E-value=35 Score=29.86 Aligned_cols=40 Identities=8% Similarity=0.288 Sum_probs=26.2
Q ss_pred CCCCCEEEE-CCC-chhHHHHHHhhCCHHHHHHHHHH-cCCcEEEEeh
Q 025812 35 LQNVSSLII-PGG-ESTTMARLAEYHNLFPALREFVK-MGKPVWGTCA 79 (247)
Q Consensus 35 l~~~d~lil-pGG-~~~~~~~l~~~~~~~~~i~~~~~-~g~PilGIC~ 79 (247)
+.++|.||+ ||+ +.+.+..|. ..-|++++. ..-|...||.
T Consensus 182 I~~AD~IvlgPGSl~TSI~P~Ll-----v~gi~~Ai~~s~A~kV~v~N 224 (326)
T 2q7x_A 182 ILESDMIVLGPGSLFTSILPNIV-----IXEIGRALLETXAEIAYVCN 224 (326)
T ss_dssp HHHCSEEEECSSCCCCCCHHHHT-----SHHHHHHHHHCSSEEEEECC
T ss_pred HHhCCEEEECCCCCHHHHhhhhh-----hccHHHHHHhccCceEEecc
Confidence 468899999 666 445566552 333444443 4679999996
No 289
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=25.09 E-value=1.1e+02 Score=24.81 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=33.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEE-CCcc---------------C-----CCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKPD---------------Q-----LQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~~---------------~-----l~~~d~lilpGG~ 47 (247)
|||.|..- |.+. .+++.|.+.|++|+.+ +++. | +.++|.||...+.
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence 58998885 7777 6889999999998765 3221 1 4568999987753
No 290
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=25.07 E-value=70 Score=21.74 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=28.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
+|.|++.+-... .+.+.|+..|+++....+..+ -..+|.+++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 52 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILL 52 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEE
Confidence 677777443344 567889989998887765432 136898887
No 291
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=25.00 E-value=2e+02 Score=22.22 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=38.5
Q ss_pred CEEEEEecC--CChH-----HHHHHHHhCCCeEEEECCcc------------CC-----CCCCEEEECC----CchhHHH
Q 025812 1 MVVGVLALQ--GSFN-----EHIAALKRLGVKGVEIRKPD------------QL-----QNVSSLIIPG----GESTTMA 52 (247)
Q Consensus 1 m~I~vl~~~--G~~~-----~~~~~L~~~G~~v~~~~~~~------------~l-----~~~d~lilpG----G~~~~~~ 52 (247)
+||+|+.-. -.+. ...+.|++.|.++.+++-|- +- .+||++|--| |.....+
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd 92 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFD 92 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTH
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHH
Confidence 378888743 2222 34578888997776655441 11 5699887665 3211122
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEE
Q 025812 53 RLAEYHNLFPALREFVKMGKPVW 75 (247)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~Pil 75 (247)
....+ -.....+-.++.++|+.
T Consensus 93 ~Va~~-v~~gl~~vsl~~~vPV~ 114 (157)
T 2i0f_A 93 IVSNE-SCRALTDLSVEESIAIG 114 (157)
T ss_dssp HHHHH-HHHHHHHHHHHTTCCEE
T ss_pred HHHHH-HHHHHHHHHhhcCCCEE
Confidence 22211 01223344455788864
No 292
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.93 E-value=38 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=28.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCe-EEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVK-GVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~-v~~~~~~~~------l~~~d~lil 43 (247)
|||.|++-+-... .+.+.|++.|++ +....+..+ -..+|.+++
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill 63 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT 63 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 5788887433333 466899999987 445555432 136899887
No 293
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.82 E-value=2.7e+02 Score=22.24 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=27.9
Q ss_pred EEEEEecC-CC--hH----HHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQ-GS--FN----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G~--~~----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
+|||+..+ .| +. .+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57777643 22 22 345677788999887643211 1 47999999653
No 294
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=24.75 E-value=1.7e+02 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=28.3
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEEECCc-------------cC-C---CCCCEEEECCC
Q 025812 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVEIRKP-------------DQ-L---QNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~~--~~~~L~~~-G~~v~~~~~~-------------~~-l---~~~d~lilpGG 46 (247)
|||||+.. |.... .+++|+.. +++++-+-++ ++ + .++|++++.--
T Consensus 26 ~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 37999996 66653 67777776 6666543221 11 1 46899998653
No 295
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=24.62 E-value=42 Score=25.22 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=24.3
Q ss_pred CEEEEEecCCChH--------------------HHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQGSFN--------------------EHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G~~~--------------------~~~~~L~~~G~~v~~~~~~ 32 (247)
||+.+++.+|++. ++++.|++.|+.+.++++.
T Consensus 1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~ 52 (179)
T 3l8h_A 1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQ 52 (179)
T ss_dssp CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECC
Confidence 7888888888642 5678888889888777654
No 296
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=24.62 E-value=44 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=26.5
Q ss_pred CEEEEEec--CCChHHH----HHHHHhCCCeEEEECC----ccCCCCCCEEEECC
Q 025812 1 MVVGVLAL--QGSFNEH----IAALKRLGVKGVEIRK----PDQLQNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~----~~~L~~~G~~v~~~~~----~~~l~~~d~lilpG 45 (247)
|||.|+-+ .||-..+ .+.|+..|+++.++.. ..++.++|.||+.-
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~ 64 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVT 64 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEE
Confidence 46777765 4665544 4555666777665432 23577899988843
No 297
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.61 E-value=1.8e+02 Score=23.32 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=29.9
Q ss_pred EEEEEecCC-C-h-----HHHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQG-S-F-----NEHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~G-~-~-----~~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpGG 46 (247)
+|||+..+- + + ..+.+++++.|+++.++....+ + ..+|+||+.+.
T Consensus 10 ~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (291)
T 3egc_A 10 VVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPS 73 (291)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 578877432 2 2 2466788889999988754321 1 57999999774
No 298
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=24.34 E-value=2.1e+02 Score=24.10 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCcc--C------------CCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--Q------------LQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--~------------l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|++++=+|++. ++..++.+.|.-+.. +-+.. + -++.+.|++-+ |.++. . .
T Consensus 152 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g~~~~--~------~ 223 (294)
T 2yv1_A 152 SVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEE--E------A 223 (294)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHH--H------H
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHH--H------H
Confidence 489999899988 678899888764432 22222 1 13567776644 43321 1 1
Q ss_pred HHHHHHHHHcCCcEEEEehhHHH
Q 025812 61 FPALREFVKMGKPVWGTCAGLIF 83 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~Ql 83 (247)
.+++++ .+||++.++.|-.-
T Consensus 224 ~~~~~~---~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 224 AKFIEK---MKKPVIGYIAGQSA 243 (294)
T ss_dssp HHHHTT---CSSCEEEEEECC--
T ss_pred HHHHHh---CCCCEEEEEecCCC
Confidence 223332 58999999988443
No 299
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=24.32 E-value=1.2e+02 Score=24.14 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=22.2
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEECCccCCCCCCEEEECCC
Q 025812 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~lilpGG 46 (247)
|||++++ ..++...+.+.++..- -.++|.||+.|-
T Consensus 6 mri~~iSDlH~~~~~~~~~l~~~~-----------~~~~D~vi~~GD 41 (260)
T 2yvt_A 6 RKVLAIKNFKERFDLLPKLKGVIA-----------EKQPDILVVVGN 41 (260)
T ss_dssp CEEEEEECCTTCGGGHHHHHHHHH-----------HHCCSEEEEESC
T ss_pred EEEEEEeecCCChHHHHHHHHHHH-----------hcCCCEEEECCC
Confidence 6898888 4676654444444320 135799999994
No 300
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=24.16 E-value=56 Score=23.15 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.2
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC------CCCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~lil 43 (247)
+|.|++.+-.+. .+...|+..|..+..+.+..+ -..+|.+++
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvll 60 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIM 60 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEE
Confidence 677776443344 466788888988888766542 136898887
No 301
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=24.13 E-value=77 Score=27.10 Aligned_cols=45 Identities=13% Similarity=-0.043 Sum_probs=30.8
Q ss_pred CEEEEEecCC--C---hHHHHHHHHhCCCeEEEECCccC---C--CCCCEEEECC
Q 025812 1 MVVGVLALQG--S---FNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPG 45 (247)
Q Consensus 1 m~I~vl~~~G--~---~~~~~~~L~~~G~~v~~~~~~~~---l--~~~d~lilpG 45 (247)
|||+++...+ . ...+.+.|++.|.+|.++..+.. + ..++.+-++.
T Consensus 21 MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~ 75 (412)
T 3otg_A 21 MRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGM 75 (412)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCC
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcCCceeecCc
Confidence 8999988543 1 23788999999999998765431 1 2455666664
No 302
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.08 E-value=93 Score=21.29 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=28.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC-eEEEECCccC------CCCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV-KGVEIRKPDQ------LQNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~-~v~~~~~~~~------l~~~d~lil 43 (247)
|+|.|++.+-.+. .+.+.|++.|+ .+....+..+ -..+|.+++
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~ 55 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVIS 55 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEE
Confidence 5777877543344 56678888898 5666665432 235898887
No 303
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=24.04 E-value=1.5e+02 Score=24.59 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=36.7
Q ss_pred EEecCCChHHHHHHHHhCCC-eEEEECCccC----CCCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 025812 5 VLALQGSFNEHIAALKRLGV-KGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (247)
Q Consensus 5 vl~~~G~~~~~~~~L~~~G~-~v~~~~~~~~----l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~ 79 (247)
++.-+|....+.+.+++.|. ++.+....++ +..+|.+|+|+| +. .+.++...|+|+++.-.
T Consensus 217 ~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg-~~-------------~~~EAma~G~Pvi~~~~ 282 (364)
T 1f0k_A 217 HQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG-AL-------------TVSEIAAAGLPALFVPF 282 (364)
T ss_dssp EECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC-HH-------------HHHHHHHHTCCEEECCC
T ss_pred EEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc-hH-------------HHHHHHHhCCCEEEeeC
Confidence 33445665566666666663 4444443332 357899999876 21 12344556999999865
Q ss_pred h
Q 025812 80 G 80 (247)
Q Consensus 80 G 80 (247)
|
T Consensus 283 ~ 283 (364)
T 1f0k_A 283 Q 283 (364)
T ss_dssp C
T ss_pred C
Confidence 4
No 304
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=23.94 E-value=87 Score=25.47 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~ 30 (247)
|||+|+.. |+.. .+...|.+.|.++..+.
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~ 30 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWL 30 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEEEEE
Confidence 89999995 8888 46788999999988764
No 305
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.63 E-value=43 Score=23.70 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=28.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCC--eEEEECCccC----C--------CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGV--KGVEIRKPDQ----L--------QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~~~----l--------~~~d~lil 43 (247)
+|.|++.+-... .+.+.|++.|. .+..+.+.++ + ..+|.+|+
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~ 65 (143)
T 2qvg_A 9 DILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILL 65 (143)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEE
Confidence 577777443333 57788999998 7777776432 1 45899988
No 306
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.42 E-value=50 Score=23.34 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=29.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEECCccC----C------------CCCCEEEEC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRKPDQ----L------------QNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~~~----l------------~~~d~lilp 44 (247)
|+|.|++.+-... .+.+.|++.|. .+..+.+.++ + ..+|.+|+-
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEE
Confidence 3677777443344 56789999998 7777765431 1 468999883
No 307
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=23.15 E-value=1.8e+02 Score=24.57 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCcc--C------------CCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--Q------------LQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--~------------l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|++++=+|++. ++..++.+.|.-+.. +-+.. + -++.+.|++-+ |.++. . .
T Consensus 153 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~~~~~--~------~ 224 (297)
T 2yv2_A 153 GVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEE--R------A 224 (297)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHH--H------H
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHH--H------H
Confidence 489999889988 678899887764332 22222 1 13567776644 33321 1 1
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
.+++++ ...+||++.++.|-
T Consensus 225 ~~~~~~-~~~~KPVv~~k~G~ 244 (297)
T 2yv2_A 225 AEMIKK-GEFTKPVIAYIAGR 244 (297)
T ss_dssp HHHHHT-TSCCSCEEEEESCC
T ss_pred HHHHHh-ccCCCCEEEEEeCC
Confidence 222332 24689999999874
No 308
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=23.10 E-value=2.7e+02 Score=23.24 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---ECCcc--C------------CCCCCEEEECC---CchhHHHHHHhhCCH
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--Q------------LQNVSSLIIPG---GESTTMARLAEYHNL 60 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--~------------l~~~d~lilpG---G~~~~~~~l~~~~~~ 60 (247)
+|++++-+|++. ++..++.+.|.-+.. +-+.. + -++.+.|++-+ |.++. ..
T Consensus 146 ~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~--~~------ 217 (288)
T 2nu8_A 146 KVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEE--EA------ 217 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH--HH------
T ss_pred CEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHH--HH------
Confidence 489999889887 677888887764432 22221 1 14567776643 44321 11
Q ss_pred HHHHHHHHHcCCcEEEEehhH
Q 025812 61 FPALREFVKMGKPVWGTCAGL 81 (247)
Q Consensus 61 ~~~i~~~~~~g~PilGIC~G~ 81 (247)
.++++. ..+||++.++.|-
T Consensus 218 ~~~~~~--~~~KPVv~~k~G~ 236 (288)
T 2nu8_A 218 AAYIKE--HVTKPVVGYIAGV 236 (288)
T ss_dssp HHHHHH--HCCSCEEEEEECT
T ss_pred HHHHHh--cCCCCEEEEEeCC
Confidence 223333 5799999999873
No 309
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=22.98 E-value=91 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=18.4
Q ss_pred EEEEEec--CCChHHHHHHHHh-CCCeEEE
Q 025812 2 VVGVLAL--QGSFNEHIAALKR-LGVKGVE 28 (247)
Q Consensus 2 ~I~vl~~--~G~~~~~~~~L~~-~G~~v~~ 28 (247)
||+|+-+ .||...+++.+.+ +|+++..
T Consensus 6 kilIvY~S~tG~T~~vA~~Ia~~l~~~~~~ 35 (162)
T 3klb_A 6 KILVAYFSCSGVTKAVAEKLAAITGADLYE 35 (162)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEECCCchHHHHHHHHHHHhCCCeEE
Confidence 7888887 4777777766544 4777653
No 310
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.93 E-value=98 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=29.1
Q ss_pred EEEEEec--CCChH----HHHHHHHhCCCeEEEECCcc---------CCCCCCEEEECC
Q 025812 2 VVGVLAL--QGSFN----EHIAALKRLGVKGVEIRKPD---------QLQNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~--~G~~~----~~~~~L~~~G~~v~~~~~~~---------~l~~~d~lilpG 45 (247)
||.|+-+ .||-. .+.+.|++.|+++.+++..+ ++.++|+||+.-
T Consensus 6 kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gs 64 (159)
T 3fni_A 6 SIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGM 64 (159)
T ss_dssp EEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEc
Confidence 6777775 46655 35566777899887764321 234689999954
No 311
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=22.88 E-value=1.3e+02 Score=21.22 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCC-CeEEEECCcc----CC----CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLG-VKGVEIRKPD----QL----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G-~~v~~~~~~~----~l----~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g 71 (247)
+|.|++.+-.+. .+.+.|++.| +++....+.. .+ ..+|.||+-=..+. ++.+ .+.+.|++.. ..
T Consensus 22 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~----~~~~~l~~~~-~~ 95 (146)
T 4dad_A 22 NILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALD-TAEL----AAIEKLSRLH-PG 95 (146)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHH----HHHHHHHHHC-TT
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHH----HHHHHHHHhC-CC
Confidence 677887544444 5778999999 9988876653 12 56899988322111 1111 1234444432 46
Q ss_pred CcEEEEeh
Q 025812 72 KPVWGTCA 79 (247)
Q Consensus 72 ~PilGIC~ 79 (247)
.|++-+..
T Consensus 96 ~~ii~lt~ 103 (146)
T 4dad_A 96 LTCLLVTT 103 (146)
T ss_dssp CEEEEEES
T ss_pred CcEEEEeC
Confidence 78887764
No 312
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=22.85 E-value=2.3e+02 Score=23.62 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=42.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEE-------------ECCccC-CCCCCEEEECCCchhHHHHHHhhCCHHHHHH
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVE-------------IRKPDQ-LQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~-------------~~~~~~-l~~~d~lilpGG~~~~~~~l~~~~~~~~~i~ 65 (247)
|||+++.+ |++.. +++. . +.+++. +.+.++ +.++|.++-..+.... .+.+.
T Consensus 13 ~rV~i~G~-GaIG~~v~~~--~-~leLv~v~~~k~gelgv~a~~d~d~lla~pD~VVe~A~~~av----------~e~~~ 78 (253)
T 1j5p_A 13 MTVLIIGM-GNIGKKLVEL--G-NFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAV----------KEYSL 78 (253)
T ss_dssp CEEEEECC-SHHHHHHHHH--S-CCSEEEEECSSCCCCSSSEECSSCCCCTTCCEEEECSCHHHH----------HHHHH
T ss_pred ceEEEECc-CHHHHHHHhc--C-CcEEEEEEeccccccCceeeCCHHHHhhCCCEEEECCCHHHH----------HHHHH
Confidence 89999996 88874 4444 3 666632 222222 2467888887654321 23355
Q ss_pred HHHHcCCcEEEEehhH
Q 025812 66 EFVKMGKPVWGTCAGL 81 (247)
Q Consensus 66 ~~~~~g~PilGIC~G~ 81 (247)
+.++.|+.++-.|.|.
T Consensus 79 ~iL~aG~dvv~~S~ga 94 (253)
T 1j5p_A 79 QILKNPVNYIIISTSA 94 (253)
T ss_dssp HHTTSSSEEEECCGGG
T ss_pred HHHHCCCCEEEcChhh
Confidence 6667889999999884
No 313
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.61 E-value=2.2e+02 Score=22.00 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEECCcc--CCCCCCEEEE-CC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEeh-hHHHHHHh
Q 025812 14 EHIAALKRLGVKGVEIRKPD--QLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCA-GLIFLANK 87 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~--~l~~~d~lil-pG-G~~~~~~~l~~~~~~~~~i~~~~~~g~PilGIC~-G~QlL~~~ 87 (247)
.+...|.+.|..+..+.+.. .+.+-|.+|+ +- |.... ..+.++.+.++|.|+++|+. ...-|++.
T Consensus 64 ~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~---------~i~~~~~ak~~g~~vI~IT~~~~s~La~~ 133 (200)
T 1vim_A 64 AFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTS---------VVNISKKAKDIGSKLVAVTGKRDSSLAKM 133 (200)
T ss_dssp HHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHH---------HHHHHHHHHHHTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHH---------HHHHHHHHHHCCCeEEEEECCCCChHHHh
Confidence 45567778898887765432 3455677665 43 44321 12344455557999999985 33334443
No 314
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=22.50 E-value=67 Score=23.25 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=29.6
Q ss_pred CEE-EEEec-CCChH------HHHHHHHhCCCeEEE-------EC---CccCCCCCCEEEECCC
Q 025812 1 MVV-GVLAL-QGSFN------EHIAALKRLGVKGVE-------IR---KPDQLQNVSSLIIPGG 46 (247)
Q Consensus 1 m~I-~vl~~-~G~~~------~~~~~L~~~G~~v~~-------~~---~~~~l~~~d~lilpGG 46 (247)
||| +|.+- .|--+ .+.++-+++|+++.+ +. +++++.++|++|+-+.
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d 66 (106)
T 2r48_A 3 AKLLAITSCPNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAAD 66 (106)
T ss_dssp CEEEEEEECSSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEES
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeC
Confidence 665 55553 35433 456777778998776 11 2346788999999774
No 315
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=22.44 E-value=79 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=23.8
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=.-..-+. .+.++|++.|++|+-+..
T Consensus 21 MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 54 (169)
T 3ph3_A 21 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGT 54 (169)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8999888655433 688999999999886643
No 316
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=22.25 E-value=99 Score=26.82 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=28.4
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCC--eEEEEC-----------------------------CccCCCCCCEEEECCCc
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGV--KGVEIR-----------------------------KPDQLQNVSSLIIPGGE 47 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~--~v~~~~-----------------------------~~~~l~~~d~lilpGG~ 47 (247)
|||+|+.. |++.. +...|-..|. ++..++ +.+++.++|.+|++.|.
T Consensus 20 ~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~aG~ 97 (331)
T 4aj2_A 20 NKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGA 97 (331)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 57888874 76663 4444444454 454432 12346789999998873
No 317
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=22.23 E-value=3.7e+02 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=19.4
Q ss_pred CEEEEEecCCCh--HHHHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~--~~~~~~L~~~G~~v~~~ 29 (247)
|||||+.. |.. ..+..+++..+++++-+
T Consensus 27 irvgiiG~-G~~~~~~~~~~~~~~~~~lvav 56 (361)
T 3u3x_A 27 LRFAAVGL-NHNHIYGQVNCLLRAGARLAGF 56 (361)
T ss_dssp CEEEEECC-CSTTHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECc-CHHHHHHHHHHhhcCCcEEEEE
Confidence 38999996 433 34667777788887744
No 318
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=22.21 E-value=2.9e+02 Score=24.77 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=21.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~ 31 (247)
|+|.|+. .|... .-++.|.+.|++++++++
T Consensus 13 ~~vlVvG-gG~va~~k~~~L~~~ga~V~vi~~ 43 (457)
T 1pjq_A 13 RDCLIVG-GGDVAERKARLLLEAGARLTVNAL 43 (457)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCcCEEEEEcC
Confidence 4566665 45555 577889999999988754
No 319
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=22.14 E-value=59 Score=25.32 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=46.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC-eEEEECCccC----C---------------CCCCEEEE----CCCchhHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGV-KGVEIRKPDQ----L---------------QNVSSLII----PGGESTTMARLA 55 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~-~v~~~~~~~~----l---------------~~~d~lil----pGG~~~~~~~l~ 55 (247)
++|.|++.+-.+. .+.+.|++.|+ .+..+.+.++ + ..+|.||+ |+.. ..+
T Consensus 62 ~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~--G~e--- 136 (206)
T 3mm4_A 62 KRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD--GYE--- 136 (206)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC--HHH---
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC--HHH---
Confidence 4788887544444 56789999998 7777776532 1 26899988 3311 111
Q ss_pred hhCCHHHHHHHHH---HcCCcEEEEehhH---HHHHHhh
Q 025812 56 EYHNLFPALREFV---KMGKPVWGTCAGL---IFLANKA 88 (247)
Q Consensus 56 ~~~~~~~~i~~~~---~~g~PilGIC~G~---QlL~~~~ 88 (247)
+.+.|++.. ....|++.+..-. ....+++
T Consensus 137 ----l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~ 171 (206)
T 3mm4_A 137 ----ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI 171 (206)
T ss_dssp ----HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH
T ss_pred ----HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH
Confidence 233444431 2468998888532 4444443
No 320
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=22.09 E-value=1.7e+02 Score=24.18 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred hHHHHHHHHhCCCeEEEECCccC----CCCCCEEEE-CC
Q 025812 12 FNEHIAALKRLGVKGVEIRKPDQ----LQNVSSLII-PG 45 (247)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~~~----l~~~d~lil-pG 45 (247)
.....+.+-..|+.+......++ +..+|.+++ +|
T Consensus 27 ~~~~an~~la~gasp~M~~~~~e~~~~~~~~dalvi~~G 65 (265)
T 1v8a_A 27 MNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIG 65 (265)
T ss_dssp HHHHHHHHHHHTCEEEECCCTTTHHHHHHHCSEEEEECT
T ss_pred ecchHHHHHhcCCCccccCCHHHHHHHHHHCCEEEEEEC
Confidence 34567888889999998776654 357899999 55
No 321
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=22.02 E-value=66 Score=24.13 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=27.9
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CCCeEEEECC----ccCCCCCCEEEEC
Q 025812 1 MVVGVLAL--QGSFNEHIAALKR-LGVKGVEIRK----PDQLQNVSSLIIP 44 (247)
Q Consensus 1 m~I~vl~~--~G~~~~~~~~L~~-~G~~v~~~~~----~~~l~~~d~lilp 44 (247)
|||.|+-+ .||-..+++.+.+ +|. +.+++. +.++.++|.||+.
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g 51 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILV 51 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEE
Confidence 47888765 4777777766654 476 544432 2357789999884
No 322
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=21.80 E-value=81 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=24.0
Q ss_pred CEEEEEecCC--C---hHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQG--S---FNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G--~---~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||+++...+ - +..+.+.|++.|.+|+++..+
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~ 37 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQ 37 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCH
Confidence 8999987533 2 226788999999999987654
No 323
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=21.78 E-value=77 Score=25.64 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=42.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE----CCCchhHHHHHHhhCCHHHHHHHHHH
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII----PGGESTTMARLAEYHNLFPALREFVK 69 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil----pGG~~~~~~~l~~~~~~~~~i~~~~~ 69 (247)
|+|.|++.+-... .+.+.|++.|+++....+..+ + ..+|.+++ |+... ++ +.+.||+..
T Consensus 130 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G--~~-------l~~~ir~~~- 199 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDG--YR-------LTQRIRQLG- 199 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCC--HH-------HHHHHHHHH-
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCH--HH-------HHHHHHhcC-
Confidence 4788877443333 567889999999888777542 1 36898887 33111 11 133444432
Q ss_pred cCCcEEEEeh
Q 025812 70 MGKPVWGTCA 79 (247)
Q Consensus 70 ~g~PilGIC~ 79 (247)
...|++.+..
T Consensus 200 ~~~piI~lt~ 209 (254)
T 2ayx_A 200 LTLPVIGVTA 209 (254)
T ss_dssp CCSCEEEEES
T ss_pred CCCcEEEEEC
Confidence 4789998874
No 324
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.60 E-value=3e+02 Score=21.68 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=28.9
Q ss_pred EEEEEecC-CC-h-----HHHHHHHHhCCCeEEEECCccC----------C--CCCCEEEECC
Q 025812 2 VVGVLALQ-GS-F-----NEHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPG 45 (247)
Q Consensus 2 ~I~vl~~~-G~-~-----~~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~lilpG 45 (247)
+|||+..+ .+ + ..+.+++++.|+++.+.....+ + ..+|+||+.+
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 37777643 22 2 2466788889999887654321 1 5799999976
No 325
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=21.49 E-value=1.8e+02 Score=24.69 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=28.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEEEE--CC--------------ccCC-CCCCEEEECCC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRL-GVKGVEI--RK--------------PDQL-QNVSSLIIPGG 46 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~-G~~v~~~--~~--------------~~~l-~~~d~lilpGG 46 (247)
|||+|+.. |+.. .+++.|.+. +++++.+ ++ .+++ .++|.+++.-.
T Consensus 4 irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp 67 (320)
T 1f06_A 4 IRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMG 67 (320)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred CEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCC
Confidence 47899986 8877 466777766 5555432 11 1222 57899998654
No 326
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.48 E-value=66 Score=22.05 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=28.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-.+. .+.+.|+..|+++....+..+ + ..+|.+++
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 53 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLL 53 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 677777443444 466788888999877666432 1 36898887
No 327
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=21.40 E-value=87 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=23.8
Q ss_pred CEEEEEecCCCh--H-HHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSF--N-EHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~--~-~~~~~L~~~G~~v~~~~~ 31 (247)
|||+|=.-.+-+ . .+.++|++.|++|+-+..
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 34 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGT 34 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcCC
Confidence 899988865543 3 678999999999886643
No 328
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.02 E-value=3.2e+02 Score=21.79 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=37.7
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEEC-Ccc----------CC--CCCCEEEECCCchhHHHHHHhhCCHH
Q 025812 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIR-KPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLF 61 (247)
Q Consensus 2 ~I~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~-~~~----------~l--~~~d~lilpGG~~~~~~~l~~~~~~~ 61 (247)
+|+++... ++ +. .+.+++++.|+++.++. ... .+ ..+|+||+.+...+.. .
T Consensus 6 ~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~---------~ 76 (303)
T 3d02_A 6 TVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVL---------E 76 (303)
T ss_dssp EEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHH---------H
T ss_pred EEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH---------H
Confidence 58888642 22 22 45667888899987543 211 11 5799999976432211 1
Q ss_pred HHHHHHHHcCCcEEEEe
Q 025812 62 PALREFVKMGKPVWGTC 78 (247)
Q Consensus 62 ~~i~~~~~~g~PilGIC 78 (247)
..++++.+.++|+.-+.
T Consensus 77 ~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 77 PVFKKARDAGIVVLTNE 93 (303)
T ss_dssp HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHCCCeEEEEe
Confidence 22333444577766543
No 329
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=20.93 E-value=64 Score=27.08 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=22.5
Q ss_pred CEEEEEecCC----ChHHHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~G----~~~~~~~~L~~~G~~v~~~~ 30 (247)
|||.|-.-+| .+..+.++|++.| +|.++.
T Consensus 2 M~ILlTNDDGi~apGi~aL~~~l~~~g-~V~VVA 34 (251)
T 2phj_A 2 PTFLLVNDDGYFSPGINALREALKSLG-RVVVVA 34 (251)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHhcC-CEEEEe
Confidence 8988777677 3558889999998 887764
No 330
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=20.87 E-value=74 Score=21.42 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=41.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
+|.|++.+-... .+...|+..|+++....+..+ + ..+|.+++-=..+ +..+ +.+.+++ ....
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~-------~~~~l~~--~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE-------VAKTIRK--TSSV 73 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHH-------HHHHHHH--HCCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHH-------HHHHHHh--CCCC
Confidence 788887544444 466788889999887766432 1 3689888732111 1122 2344554 2578
Q ss_pred cEEEEeh
Q 025812 73 PVWGTCA 79 (247)
Q Consensus 73 PilGIC~ 79 (247)
|++-+..
T Consensus 74 ~ii~~s~ 80 (120)
T 2a9o_A 74 PILMLSA 80 (120)
T ss_dssp CEEEEES
T ss_pred CEEEEec
Confidence 8887764
No 331
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.86 E-value=74 Score=21.54 Aligned_cols=73 Identities=5% Similarity=-0.022 Sum_probs=39.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EECCccC----C--CCCCEEEECCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQ----L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~----l--~~~d~lilpGG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
|+|.|++.+-... .+.+.|+..|++++ ...+..+ + ..+|.+++-=..+.. +.+ .+.+.+++. ....
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~-~g~----~~~~~l~~~-~~~~ 76 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEM-NGI----DAIKEIMKI-DPNA 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGG-CHH----HHHHHHHHH-CTTC
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCC-cHH----HHHHHHHhh-CCCC
Confidence 3677777443333 56788898999854 4555432 1 358988873222110 111 123344442 2467
Q ss_pred cEEEEeh
Q 025812 73 PVWGTCA 79 (247)
Q Consensus 73 PilGIC~ 79 (247)
|++-+..
T Consensus 77 ~ii~~s~ 83 (120)
T 1tmy_A 77 KIIVCSA 83 (120)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 8877653
No 332
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=20.82 E-value=2.9e+02 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=18.8
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEE
Q 025812 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVE 28 (247)
Q Consensus 1 m~I~vl~~~G~~~~--~~~~L~~~-G~~v~~ 28 (247)
|||||+.. |.... +++.|.+. +++++-
T Consensus 28 ~rigiIG~-G~~g~~~~~~~l~~~~~~~l~a 57 (350)
T 3rc1_A 28 IRVGVIGC-ADIAWRRALPALEAEPLTEVTA 57 (350)
T ss_dssp EEEEEESC-CHHHHHTHHHHHHHCTTEEEEE
T ss_pred eEEEEEcC-cHHHHHHHHHHHHhCCCeEEEE
Confidence 37899985 66653 56777777 677653
No 333
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.79 E-value=76 Score=21.58 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=28.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 1 m~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
++|.|++.+-... .+.+.|+..|+++....+..+ + ..+|.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~ 51 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILM 51 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 3677777443343 567889999999887765432 1 35898887
No 334
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.79 E-value=2.5e+02 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=18.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEE
Q 025812 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~~-~~~~L~~~G~~v~~~ 29 (247)
|||+||.- |.+.. +++.|.+ ..++.+.
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~ 44 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIG 44 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEEEE
T ss_pred cEEEEECC-CHHHHHHHHHHhc-CCCeEEE
Confidence 89999985 88775 5566654 4566553
No 335
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=20.71 E-value=40 Score=29.41 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=23.5
Q ss_pred CEEEEEecC--CCh---HHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQ--GSF---NEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~--G~~---~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||++.... |.+ ..+.+.|++.|.+|+++..+
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 899888752 333 36789999999999987654
No 336
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.69 E-value=66 Score=25.08 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=42.5
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEECCCch--hHHHHHHhhCCHHHHHHHHHHcCC
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGK 72 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lilpGG~~--~~~~~l~~~~~~~~~i~~~~~~g~ 72 (247)
+|.|++.+-.+. .+...|+..|+++..+.+.++ + ..+|.+++-=..+ +..+ +.+.|++. ...
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~-------~~~~l~~~--~~~ 76 (230)
T 2oqr_A 6 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTD-------VCKQLRAR--SSV 76 (230)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHH-------HHHHHHHH--CSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHH-------HHHHHHcC--CCC
Confidence 778877544444 567889999999887766542 1 3689988722111 1111 23445552 578
Q ss_pred cEEEEehh
Q 025812 73 PVWGTCAG 80 (247)
Q Consensus 73 PilGIC~G 80 (247)
|++-+..-
T Consensus 77 ~ii~lt~~ 84 (230)
T 2oqr_A 77 PVIMVTAR 84 (230)
T ss_dssp SEEEEECC
T ss_pred CEEEEeCC
Confidence 98887643
No 337
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.60 E-value=1e+02 Score=22.43 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=19.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||+|+.. .+.+-.++-+|+++.++.++
T Consensus 3 mKiaVIGD----~Dtv~GFrLaGie~~~v~~~ 30 (115)
T 3aon_B 3 YKIGVVGD----KDSVSPFRLFGFDVQHGTTK 30 (115)
T ss_dssp EEEEEESC----HHHHGGGGGGTCEEECCCSH
T ss_pred eEEEEEEC----HHHHHHHHHcCCeEEEeCCH
Confidence 58999973 55667888889977655443
No 338
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.47 E-value=2.3e+02 Score=23.79 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=19.2
Q ss_pred CEEEEEecCCChH--HHHHHHHhC-CCeEEEE
Q 025812 1 MVVGVLALQGSFN--EHIAALKRL-GVKGVEI 29 (247)
Q Consensus 1 m~I~vl~~~G~~~--~~~~~L~~~-G~~v~~~ 29 (247)
|||||+.. |... .++.+++.. +++++-+
T Consensus 24 irigiIG~-G~ig~~~~~~~~~~~~~~~lvav 54 (350)
T 4had_A 24 LRFGIIST-AKIGRDNVVPAIQDAENCVVTAI 54 (350)
T ss_dssp EEEEEESC-CHHHHHTHHHHHHHCSSEEEEEE
T ss_pred cEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEE
Confidence 38999985 6665 356778776 6676643
No 339
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=20.46 E-value=82 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=28.4
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEEC-Ccc-----------CCCCCCEEEECCC
Q 025812 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-KPD-----------QLQNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~G~~~~~~~~L~~~G~~v~~~~-~~~-----------~l~~~d~lilpGG 46 (247)
||+|+. .+ ..++.+++.++++.++. +|. -++++|.+|++|.
T Consensus 143 kV~vIG---~f-P~i~~~~~~~~~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgs 195 (270)
T 3l5o_A 143 KVGVVG---HF-PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCA 195 (270)
T ss_dssp EEEEES---CC-TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETH
T ss_pred EEEEEC---Cc-hhHHHHHhcCCCEEEEECCCCCCCCChhHHHHhhccCCEEEEEee
Confidence 677774 45 45566777888888763 221 1578999999985
No 340
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.44 E-value=1.2e+02 Score=20.98 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=23.3
Q ss_pred CEEEEEecCCCh----------HHHHHHHHhCCCeEEEECC
Q 025812 1 MVVGVLALQGSF----------NEHIAALKRLGVKGVEIRK 31 (247)
Q Consensus 1 m~I~vl~~~G~~----------~~~~~~L~~~G~~v~~~~~ 31 (247)
||..+++.+|++ .++++.|++.|+++.++++
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~ 42 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSN 42 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeC
Confidence 677888998864 2456778888998887765
No 341
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.42 E-value=75 Score=22.10 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=28.8
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-... .+...|+..|+++..+.+..+ + ..+|.+++
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~ 53 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVL 53 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEE
Confidence 677777544444 466789989999887766542 1 35898887
No 342
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.22 E-value=81 Score=22.29 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=29.4
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEECCccC----C--CCCCEEEE
Q 025812 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (247)
Q Consensus 2 ~I~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~lil 43 (247)
+|.|++.+-... .+.+.|+..|+++....+..+ + ..+|.+++
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvll 54 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIIL 54 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 588888655555 466788888998877766432 1 36898887
No 343
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=20.16 E-value=2e+02 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.9
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEE
Q 025812 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVE 28 (247)
Q Consensus 1 m~I~vl~~~G~~~~--~~~~L~~~-G~~v~~ 28 (247)
|||||+.. |+... +.+.|.+. +++++-
T Consensus 7 ~~igiIG~-G~~g~~~~~~~l~~~~~~~l~a 36 (308)
T 3uuw_A 7 IKMGMIGL-GSIAQKAYLPILTKSERFEFVG 36 (308)
T ss_dssp CEEEEECC-SHHHHHHTHHHHTSCSSSEEEE
T ss_pred CcEEEEec-CHHHHHHHHHHHHhCCCeEEEE
Confidence 48999986 77663 56777764 677763
No 344
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=20.16 E-value=94 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.099 Sum_probs=24.4
Q ss_pred CEEEEEecCC--C---hHHHHHHHHhCCCeEEEECCc
Q 025812 1 MVVGVLALQG--S---FNEHIAALKRLGVKGVEIRKP 32 (247)
Q Consensus 1 m~I~vl~~~G--~---~~~~~~~L~~~G~~v~~~~~~ 32 (247)
|||.++...+ - +..+.+.|++.|++|+++..+
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~ 37 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPP 37 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 8999887543 2 226789999999999987654
No 345
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.15 E-value=1e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=-0.050 Sum_probs=19.7
Q ss_pred CEEEEEecC----CChH----HHHHHHHhCCCeEEEEC
Q 025812 1 MVVGVLALQ----GSFN----EHIAALKRLGVKGVEIR 30 (247)
Q Consensus 1 m~I~vl~~~----G~~~----~~~~~L~~~G~~v~~~~ 30 (247)
|||+|+.-. |+-. .+.+.+++.|+++++++
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~id 72 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFD 72 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 689888842 2222 34566677799988865
No 346
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.14 E-value=2.6e+02 Score=22.17 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=28.6
Q ss_pred EEEEEecC-C--C-hH-----HHHHHHHhCCCeEEEECC--ccC----------C--CCCCEEEECCC
Q 025812 2 VVGVLALQ-G--S-FN-----EHIAALKRLGVKGVEIRK--PDQ----------L--QNVSSLIIPGG 46 (247)
Q Consensus 2 ~I~vl~~~-G--~-~~-----~~~~~L~~~G~~v~~~~~--~~~----------l--~~~d~lilpGG 46 (247)
+|+|+... + + +. .+.+++++.|+++.+... ..+ + ..+|+||+.+.
T Consensus 7 ~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 7 YMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp EEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 58887642 2 2 22 355677888999887643 111 1 47999999764
No 347
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.02 E-value=1.3e+02 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCeEEEECCcc
Q 025812 14 EHIAALKRLGVKGVEIRKPD 33 (247)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~ 33 (247)
.+.+.|++.|+++.++....
T Consensus 38 ~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 38 NLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp HHHHHHHHTTCEEEEESCTT
T ss_pred HHHHHHHHcCCeEEEEecCC
Confidence 68899999999999886543
Done!