BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025813
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 10/230 (4%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
++ ++A TY L+ L +G + + +D ++ L +R LQ DGSF + G+E D+RFVY
Sbjct: 117 YDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 121
CA+ IC++L +WSGMD ++A +YI SYD G G ESHGG T+C +ASL LMG +
Sbjct: 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236
Query: 122 EDNVLSKNTXXXXXXXXXXXXWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN 181
E+ K WC+ RQ G+ GR NKP DTCY+FW+G+ L++L +
Sbjct: 237 EEVFSEKE-------LNRIKRWCIMRQQ--NGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
Query: 182 LIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230
+ E R ++L+ Q + GGF K P PD H+++G SL+EE G+
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 123/238 (51%), Gaps = 16/238 (6%)
Query: 6 NLASTYCALAILKAV-GYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
+L T A+ IL + N+D ++ +++LQ+ DGSF +G E D RF +CA
Sbjct: 94 HLLYTLSAVQILTLYDSIHVINVDK--VVAYVQSLQKEDGSFAGDIWG-EIDTRFSFCAV 150
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
A LL ++ E+A ++L+C ++DGGFG PGSESH G YC GF
Sbjct: 151 ATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT------GF---- 200
Query: 125 VLSKNTXXXXXXXXXXXXWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLID 184
L+ + W +RQ GG GR K D CY++W+ + L+++G + ID
Sbjct: 201 -LAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 259
Query: 185 KEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
+E LR F+L CQ + GGF PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 260 REKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 167 AFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224
+W +V+ ++G + ++KE + F+ +CQ + GG G P L ++ +L
Sbjct: 50 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTL 107
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 123/238 (51%), Gaps = 16/238 (6%)
Query: 6 NLASTYCALAILKAV-GYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
+L T A+ IL + N+D ++ +++LQ+ DGSF +G E D RF +CA
Sbjct: 93 HLLYTLSAVQILTLYDSIHVINVDK--VVAYVQSLQKEDGSFAGDIWG-EIDTRFSFCAV 149
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
A LL ++ E+A ++L+C ++DGGFG PGSESH G YC GF
Sbjct: 150 ATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT------GF---- 199
Query: 125 VLSKNTXXXXXXXXXXXXWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLID 184
L+ + W +RQ GG GR K D CY++W+ + L+++G + ID
Sbjct: 200 -LAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 258
Query: 185 KEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
+E LR F+L CQ + GGF PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 259 REKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 316
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 167 AFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224
+W +V+ ++G + ++KE + F+ +CQ + GG G P L ++ +L
Sbjct: 49 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTL 106
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 183
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 240
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 241 GVPGMEAHGGYTFCGLAALVILKK 264
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 128 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 186
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 244
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 245 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 295
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 296 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 355
Query: 229 G 229
G
Sbjct: 356 G 356
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 112 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 162
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 219
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 220 GVPGMEAHGGYTFCGLAALVILKK 243
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 127 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 185
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 186 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 243
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 244 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 294
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 295 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 354
Query: 229 G 229
G
Sbjct: 355 G 355
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 111 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 161
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 162 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 218
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 219 GVPGMEAHGGYTFCGLAALVILKK 242
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 128 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 186
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 244
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 245 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 295
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 296 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 355
Query: 229 G 229
G
Sbjct: 356 G 356
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 112 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 162
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 219
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 220 GVPGMEAHGGYTFCGLAALVILKK 243
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 148 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 206
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 207 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 264
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 265 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 315
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 316 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 375
Query: 229 G 229
G
Sbjct: 376 G 376
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 132 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 182
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 183 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 239
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 240 GVPGMEAHGGYTFCGLAALVILKK 263
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 152 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 210
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 211 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 268
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 269 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 319
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 320 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 379
Query: 229 G 229
G
Sbjct: 380 G 380
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 136 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 186
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 187 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 243
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 244 GVPGMEAHGGYTFCGLAALVILKK 267
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 128 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 186
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 244
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 245 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 295
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 296 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 355
Query: 229 G 229
G
Sbjct: 356 G 356
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 112 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 162
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 219
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 220 GVPGMEAHGGYTFCGLAALVILKK 243
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED-NVLSKNTXXXXXXXXXXXXWCLQ 146
CQS DGGFG PG H TY AV +L ++G E NV+++ +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK---------LLQYLYS 183
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFG 203
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIG 240
Query: 204 KCPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 241 GVPGMEAHGGYTFCGLAALVILKK 264
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--RE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQ 374
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--RE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQ 374
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--RE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
+ + ++AL+ ++L CQ GG PG D YH+ + + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQ 374
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--RE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
+ + ++AL+ ++L CQ GG PG D YH+ + + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQ 374
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA T A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ ++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK--KE 265
Query: 124 NVLSKNTXXXXXXXXXXXXWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
L+ + W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 266 RSLNLKS---------LLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 118/281 (41%), Gaps = 76/281 (27%)
Query: 6 NLASTYCAL---AILKAVGYNFANIDSKSILTSMRNLQQHDG----SFMPIHFGAEK--- 55
NL+ST AL ILK+ + I+ K I+ + Q DG F+P + E+
Sbjct: 93 NLSSTLFALYNLLILKSPYHTI--INRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGD 150
Query: 56 -------DLRFVYCAAAICFLLE-------------DWSGMDRERAKAYILNCQSYDGGF 95
DLR Y A I L++ + + +D + +IL+ + +GGF
Sbjct: 151 YKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGF 210
Query: 96 GLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTXXXXXXXXXXXXWCLQRQA------ 149
T ESH G T+CA+ASL+L+ + + + S W + RQ
Sbjct: 211 SSTIMDESHLGFTFCAIASLKLLNYPLEKLKS------------TKEWLIHRQVDYPENL 258
Query: 150 ----------------------ADGGFQGRANKPSDTCYAFW-IGSVLRM-LGGYNLIDK 185
GGF GR NK SDTCY++W GS+ + + L+D
Sbjct: 259 YPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDL 318
Query: 186 EALRGFLLT-CQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSL 224
+LL Q+Q +GGFG+ P PD HS+ + SL
Sbjct: 319 NKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSL 359
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 72/284 (25%)
Query: 9 STYCALAIL----KAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
++ C+LAI G+ +SI ++ DG F+ + G E D+R YC
Sbjct: 145 ASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFV-VCEGGEVDVRGTYCLL 203
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFG--------LTPGS--------------- 101
+ LL+ + ++ CQ+Y+GGF + P +
Sbjct: 204 VVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMA 263
Query: 102 ESHGGGTYCAVASLRLMGFIEDNVLSKNTXXXXXXXXXXXXWCLQRQAAD---GGFQGRA 158
E+HGG T C++ S L+ + + W + +Q GGF+GR
Sbjct: 264 EAHGGYTSCSLNSHFLL-----TSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT 318
Query: 159 NKPSDTCYAFWIG-------SVLRMLGGYN-------------------------LIDKE 186
NK D CY++W+G ++R + ++
Sbjct: 319 NKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRV 378
Query: 187 ALRGFLLTCQSQ----YGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
AL+ F L Q GG PG PD YH+ + S+ +
Sbjct: 379 ALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQ 422
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 66 ICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
+C +L+ E+ + Y+L+ Q DG + L PG T A +L+ +G D
Sbjct: 49 LCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE 107
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 66 ICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
+C +L+ E+ + Y+L+ Q DG + L PG T A +L+ +G D
Sbjct: 49 LCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE 107
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 66 ICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
+C +L+ E+ + Y+L+ Q DG + L PG T A +L+ +G D
Sbjct: 49 LCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE 107
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
RE Y+ + Q DGG+GL +S GT SLR++G D+
Sbjct: 124 REEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD 170
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
RE Y+ + Q DGG+GL +S GT SLR++G D+
Sbjct: 124 REEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD 170
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 57 LRFVYCAAAICFLLEDWSGMDRERAKAYIL------------NCQSYDGGFGLTPGSESH 104
LR+ A + + DW D+E+AK Y+ +S+ GFG P H
Sbjct: 337 LRYATTTAFLACVYSDWENGDKEKAKTYLEFARSQADYALGSTGRSFVVGFGENPPKRPH 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,566,410
Number of Sequences: 62578
Number of extensions: 311336
Number of successful extensions: 704
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 65
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)