BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025813
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 10/230 (4%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
++ ++A TY L+ L +G + + +D ++ L +R LQ DGSF + G+E D+RFVY
Sbjct: 117 YDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 121
CA+ IC++L +WSGMD ++A +YI SYD G G ESHGG T+C +ASL LMG +
Sbjct: 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236
Query: 122 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN 181
E+ K +L + WC+ RQ G+ GR NKP DTCY+FW+G+ L++L +
Sbjct: 237 EEVFSEK-------ELNRIKRWCIMRQQ--NGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
Query: 182 LIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230
+ E R ++L+ Q + GGF K P PD H+++G SL+EE G+
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 138/230 (60%), Gaps = 10/230 (4%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
++ ++A TY L+ L +G + +D ++ L +R LQ DGSF + G+E D+RFVY
Sbjct: 117 YDSGHIAMTYTGLSCLIILGDDLGRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 121
CA+ IC++L +WSGMD ++A +YI SYD G G ESHGG T+C +ASL LMG +
Sbjct: 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236
Query: 122 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN 181
E+ K +L + WC+ RQ G+ GR NKP DTCY+FW+G+ L++L +
Sbjct: 237 EEVFSEK-------ELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
Query: 182 LIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230
+ E R ++L+ Q + GGF K P PD H+++G SL+EE G+
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 10/230 (4%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
++ ++A TY L+ L +G + + ++ ++ L +R LQ DGSF + G+E D+RFVY
Sbjct: 117 YDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 121
CA+ IC++L +WSGMD ++A YI SYD G G ESHGG T+C +ASL LMG +
Sbjct: 177 CASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236
Query: 122 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN 181
E+ K +L + WC+ RQ G+ GR NKP DTCY+FW+G+ L++L +
Sbjct: 237 EEVFSEK-------ELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
Query: 182 LIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230
+ E R ++L+ Q + GGF K P PD H+++G SL+EE G+
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 10/230 (4%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
++ ++A TY L+ L +G + + ++ ++ L +R LQ DGSF + G+E D+RFVY
Sbjct: 117 YDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 121
CA+ IC++L +WSGMD ++A YI SYD G G ESHGG T+C +ASL LMG +
Sbjct: 177 CASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236
Query: 122 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN 181
E+ K +L + WC+ RQ G+ GR NKP DTCY+FW+G+ L++L +
Sbjct: 237 EEVFSEK-------ELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
Query: 182 LIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230
+ E R ++L+ Q + GGF K P PD H+++G SL+EE G+
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 139/238 (58%), Gaps = 13/238 (5%)
Query: 9 STYCALAILKAVGYNFANIDSKSILTSMRNLQQH-DGSFMPIHFGAEKDLRFVYCAAAIC 67
+TYCAL IL+ +G +F+ ++ K+I+ S+R Q+ DG+ + DLR ++ A AI
Sbjct: 117 NTYCALLILRILGDDFSGVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHLFSACAIS 176
Query: 68 FLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLS 127
F+L+DWS +++E A YI +C SY+ FG TP E+HGG TYCA+ASL L+G ++ VL
Sbjct: 177 FILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLD--VLE 234
Query: 128 KNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEA 187
L W +++Q GF GR NK DTCYAFWIG+ L M+ Y+LID +
Sbjct: 235 PFKEQ-------LTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFAS 285
Query: 188 LRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSA 244
+ F+ + Q + GG K PG LPD+ HS+ S P + + L +++ +A
Sbjct: 286 INAFIGSAQHEAIGGVAKEPGQLPDVMHSYLSLVGLSFGNIPSIQQVIPCLNLSKRAA 343
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 22/250 (8%)
Query: 5 SNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+L ST A+ IL + Y+ ID S++ + LQ+ DGSF+ +G E D RF Y A
Sbjct: 97 DHLLSTLSAVQIL--IQYDALDKIDINSVVDYVVKLQREDGSFVGDQWG-EVDTRFSYAA 153
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
LL+ ++ E+A YIL+CQ++DGGFG PG+ESH G + V +L ++ I
Sbjct: 154 IMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINK 213
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLI 183
ID+ L W +RQ +GG GR K SD CY++W+ S L + + I
Sbjct: 214 -----------IDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWI 262
Query: 184 DKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLL-----EEPGLNPLCAEL 237
D + L+ ++L CQ ++ GG PGD+PD++H+F+G SL+ + ++P+ A L
Sbjct: 263 DNDKLKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFKDQIESIDPVYA-L 321
Query: 238 GMTEFSALGI 247
G LG+
Sbjct: 322 GTKTLQKLGL 331
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 76 MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSII 135
+D+ ++L+CQ +GGFG G+ SH +++++++ I+ + L K I
Sbjct: 70 LDKNEVIQWLLSCQKSNGGFG---GNTSHDDHLLSTLSAVQIL--IQYDALDK------I 118
Query: 136 DLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTC 195
D+ ++ + ++ Q DG F G DT +++ L +L + I+ E ++L+C
Sbjct: 119 DINSVVDYVVKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSC 178
Query: 196 QSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227
Q+ GGFG PG F A S+L E
Sbjct: 179 QNFDGGFGSIPGAESHAGQIFTCVGALSILNE 210
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 16/238 (6%)
Query: 6 NLASTYCALAILKAVGYNFAN-IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
+L T A+ IL Y+ N ID ++ +++LQ+ DGSF +G E D RF +CA
Sbjct: 94 HLLYTLSAVQILTL--YDSINVIDINKVVEYVQSLQKEDGSFAGDIWG-EIDTRFSFCAV 150
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
A LL ++ E+A ++L+C ++DGGFG PGSESH G YC GF
Sbjct: 151 ATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT------GF---- 200
Query: 125 VLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLID 184
L+ + ++ LL W +RQ GG GR K D CY++W+ + L+++G + ID
Sbjct: 201 -LAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 259
Query: 185 KEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
+E LR F+L CQ + GGF PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 260 REKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 6 NLASTYCALAILKAVGYNFAN-IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
+L T A+ IL Y+ N ID ++ ++ LQ+ DGSF +G E D RF +CA
Sbjct: 94 HLLYTLSAVQILTL--YDSINVIDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAV 150
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
A LL ++ E+A ++L+C ++DGGFG PGSESH G YC GF
Sbjct: 151 ATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT------GF---- 200
Query: 125 VLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLID 184
L+ + ++ LL W +RQ GG GR K D CY++W+ + L+++G + ID
Sbjct: 201 -LAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 259
Query: 185 KEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
+E LR F+L CQ + GGF PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 260 REKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPE 317
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 13/216 (6%)
Query: 27 IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYIL 86
I+ ++ +++LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L
Sbjct: 122 INVDKVVAYVQSLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVL 180
Query: 87 NCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 146
+C ++DGGFG PGSESH G YC GF L+ + ++ LL W +
Sbjct: 181 SCMNFDGGFGCRPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCE 229
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKC 205
RQ GG GR K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF
Sbjct: 230 RQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADR 289
Query: 206 PGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 290 PGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 325
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 60 VYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMG 119
VY + L+ M+RE +I +CQ GG + G + H T AV
Sbjct: 58 VYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAV------- 110
Query: 120 FIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGG 179
+L+ S +I++ ++++ Q DG F G DT ++F + L +LG
Sbjct: 111 ----QILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK 166
Query: 180 YNLIDKEALRGFLLTCQSQYGGFGKCPG 207
+ I+ E F+L+C + GGFG PG
Sbjct: 167 LDAINVEKAIEFVLSCMNFDGGFGCRPG 194
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 13/216 (6%)
Query: 27 IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYIL 86
I+ ++ +++LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L
Sbjct: 114 INVDKVVAYVQSLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVL 172
Query: 87 NCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 146
+C ++DGGFG PGSESH G YC GF L+ + ++ LL W +
Sbjct: 173 SCMNFDGGFGCRPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCE 221
Query: 147 RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKC 205
RQ GG GR K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF
Sbjct: 222 RQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADR 281
Query: 206 PGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
PGD+ D +H+ +G SLL E + P+ M E
Sbjct: 282 PGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 60 VYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMG 119
VY + L+ M++E +I +CQ GG + G + H T AV
Sbjct: 50 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAV------- 102
Query: 120 FIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGG 179
+L+ S +I++ ++++ Q DG F G DT ++F + L +LG
Sbjct: 103 ----QILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK 158
Query: 180 YNLIDKEALRGFLLTCQSQYGGFGKCPG 207
+ I+ E F+L+C + GGFG PG
Sbjct: 159 LDAINVEKAIEFVLSCMNFDGGFGCRPG 186
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 14/238 (5%)
Query: 5 SNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAA 64
S+L T CA+ L + + D+ +I ++ LQQ DGSF E D RF C+
Sbjct: 99 SHLLHTLCAVQTL-IIFNSIEKADADTISEYVKGLQQEDGSFCG-DLSGEVDTRFTLCSL 156
Query: 65 AICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 124
A C LL S ++ + A +++ C + DGGFG PGSESH G YC V +L + G +++
Sbjct: 157 ATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDE- 215
Query: 125 VLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLID 184
ID W RQ GG GR K D CY++W+ + L +LG N ID
Sbjct: 216 ----------IDRDRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFID 265
Query: 185 KEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241
+A++ F+ CQ + GGF PGD D +H+ +G A SL + L + MT+
Sbjct: 266 SDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFGDDTLESVDPIFCMTK 323
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 39 LQQHDGSFMPIHFGAEKDLRF--VYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 96
+ Q++ + H+ + LR +Y L + M E Y+L C++ DGG+G
Sbjct: 33 INQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYG 92
Query: 97 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 156
PG +SH T CAV +L + IE D + + Q DG F G
Sbjct: 93 PAPGHDSHLLHTLCAVQTLIIFNSIEK-----------ADADTISEYVKGLQQEDGSFCG 141
Query: 157 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPG 207
+ DT + + +LG + ++ ++ FL+ C + GGFG PG
Sbjct: 142 DLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPG 192
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 127/244 (52%), Gaps = 10/244 (4%)
Query: 6 NLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGA--EKDLRFVYCA 63
LA T ++ L +G N + ID I + + G F I + ++D+R +Y A
Sbjct: 96 QLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMA 155
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRL-MGFIE 122
I LL D+S D + YI +CQ Y+GGF L P E+H G T+CA+AS L + I
Sbjct: 156 TTIASLL-DFSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIP 214
Query: 123 DNVL-SKNTSSSIID----LPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRML 177
++ L + N S +++D + L+ W RQ + GG GR NK DTCYA+W+ S L++L
Sbjct: 215 NSSLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLL 274
Query: 178 GGYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAE 236
ID L +LL Q GGF K PG+ PD+ HS G A + ++ + A+
Sbjct: 275 DALPFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVLHSALGLYAMAYQDDKSFPKVNAD 334
Query: 237 LGMT 240
+ MT
Sbjct: 335 IHMT 338
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANIDS----------KSILTSMRNLQQHDGSFMPIHF 51
H+G ++ ST AL +LK ++ + ++ + LQ DGSF +
Sbjct: 86 HDG-HILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKY 144
Query: 52 GAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCA 111
G E D RFVY A + LL + + A A+I+ C ++DGGFGL PGSESH +
Sbjct: 145 G-EVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTC 203
Query: 112 VASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGGFQGRANKPSDTCYAFWI 170
V +L +M + D + +N +ID W +RQ GGF GR K D CY++W+
Sbjct: 204 VGALAIMNKL-DLLDVENKKVKLID------WLTERQVLPSGGFNGRPEKLPDVCYSWWV 256
Query: 171 GSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
S L +L N +D + L F+LTCQ + GGF PG+ D+YH+ + SL++
Sbjct: 257 LSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLID 313
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 41/249 (16%)
Query: 5 SNLASTYCALAILKAVGY--NFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYC 62
S++ ST+ A++ L +G ++ ID +++ + ++ +G+F G E D R YC
Sbjct: 146 SHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTS-EDGGEYDSRTTYC 204
Query: 63 AAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 122
A A+ +L + ++L+CQ+Y+GGFG P +E+HGG T+C+VA+L ++
Sbjct: 205 AIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSIL---- 260
Query: 123 DNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN- 181
N L K ID+ L W RQ+ DGGF+GR NK DTCY++W G+V ++ Y
Sbjct: 261 -NSLHK------IDMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFN 313
Query: 182 ----------------------LIDKEALRGFLLT-CQ---SQYGGFGKCPGDLPDLYHS 215
L ++ L+ +++ CQ +Y GF P D YH+
Sbjct: 314 YYKKQQQDDGDGKEGDQQEEGLLFNQAKLQEYVIRFCQQSDKKYSGFSDHPHRGKDYYHT 373
Query: 216 FYGYTAFSL 224
YG + SL
Sbjct: 374 CYGLSGISL 382
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 103 SHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 162
SH T+ AV++L ++G E S ID + + ++ + +G F
Sbjct: 146 SHVVSTFAAVSALYVIGTEE--------SYKTIDREAMYKFLMRMKTKEGAFTSEDGGEY 197
Query: 163 DTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGKCPGDLPDLYHSFYGY 219
D+ + +V ML N++ E RG FLL+CQ+ GGFG P + ++F
Sbjct: 198 DSRTTYCAIAVASML---NILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSV 254
Query: 220 TAFSLL 225
A S+L
Sbjct: 255 AALSIL 260
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 18/244 (7%)
Query: 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYC 62
+ ++ +T A+ +L A+ + +D + + + LQ DGS +G E D RF+Y
Sbjct: 77 HDDHITNTVYAVQVL-AMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWG-EIDARFLYS 134
Query: 63 AAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 122
+L +++ A +++ C ++DGGFGL PG+ESHG + VA+L+++ ++
Sbjct: 135 GINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLD 194
Query: 123 DNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL 182
+ID LL W +RQ GG GR K D+CY +W S L ++G +
Sbjct: 195 -----------LIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDW 243
Query: 183 IDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPL----CAEL 237
ID+ L FLL Q + GGF D D+YH+ + SLL+ P + P+ C L
Sbjct: 244 IDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLLQFPNIEPVDPRFCLPL 303
Query: 238 GMTE 241
+T+
Sbjct: 304 EVTQ 307
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 60 VYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMG 119
+Y + +LL+ +D+ER +++L+C + GGF PG + H T AV
Sbjct: 36 IYWSCMSFWLLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAV------- 88
Query: 120 FIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGG 179
VL+ S ++D + S+ + Q DG +G D + + + L +LG
Sbjct: 89 ----QVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGK 144
Query: 180 YNLIDKEALRGFLLTCQSQYGGFGKCPG 207
+ ++K +L+ C + GGFG CPG
Sbjct: 145 LDYLNKNTAVDWLMKCYNFDGGFGLCPG 172
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 164 TCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFS 223
+C +FW +L + IDKE + FLL+C ++ GGF PG + ++ Y +
Sbjct: 39 SCMSFW------LLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLA 92
Query: 224 LLE 226
+L+
Sbjct: 93 MLD 95
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 29/251 (11%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV------- 260
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 261 -ILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 GLNPLCAELGM 239
G + ++ M
Sbjct: 377 GSGAMLHDMVM 387
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147
CQS DGGFG PG H TY AV +L ++G E + ++I+ LL +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYNVINREKLLQYLYSL 184
Query: 148 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 204
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 205 CPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G + I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV------- 260
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 261 -ILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147
CQS DGGFG PG H TY AV +L ++G E + ++I+ LL +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYNVINREKLLQYLYSL 184
Query: 148 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 204
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 205 CPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL-------- 259
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
V+ K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 260 -VILKRERS--LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147
CQS +GGFG PG H TY AV +L ++G E + II+ LL +
Sbjct: 133 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYDIINREKLLQYLYSL 184
Query: 148 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 204
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 205 CPGDLPDLYHSFYGYTAFSLLE-EPGLN 231
PG ++F G A +L+ E LN
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKRERSLN 269
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFL-MHDGGEVDVRSAYCA 207
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL-------- 259
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 178
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 260 VILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 179 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228
+ ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSRWMFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 229 G 229
G
Sbjct: 377 G 377
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 88 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147
CQS +GGFG PG H TY AV +L ++G E + +I+ LL +
Sbjct: 133 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYDVINREKLLQYLYSL 184
Query: 148 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 204
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHDGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 205 CPGDLPDLYHSFYGYTAFSLLEE 227
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 5 SNLASTYCA---LAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 61
S+LASTY A L++ + + ID K I + +L++ +G F E D R +Y
Sbjct: 155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIY 214
Query: 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPG-SESHGGGTYCAVASLRLMGF 120
CA +I LL + E Y+ NCQ+Y+GGFG P E+HGG T+CA ASL ++
Sbjct: 215 CALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRS 274
Query: 121 IEDNVLSKNTSSSIIDLPLLLSWCLQRQ-AADGGFQGRANKPSDTCYAFWIG---SVLRM 176
++ I++ LL W RQ + GF GR+NK D CY+FW+G ++L
Sbjct: 275 MDQ-----------INVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEA 323
Query: 177 LGGYNLIDKEALRGFLLTC--QSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226
G +K ALR ++L C + + G PG D YH+ Y ++ E
Sbjct: 324 FGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAE 375
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 16/237 (6%)
Query: 2 HNGSNLASTYCALAILKAVGYNFANI---DSKSILTS-MRNLQQHDGSFMPIHFGAEKDL 57
+ ++L +T A+ IL Y+ ++ D K L S +R Q DGSF FG E D
Sbjct: 80 RHDAHLLTTLSAVQILAT--YDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFG-EVDT 136
Query: 58 RFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRL 117
RFVY A + +L + + + A ++L C ++DGGFGL P +ESH + + +L +
Sbjct: 137 RFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAI 196
Query: 118 MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRML 177
+ ++LS + I W +RQ +GG GR +K D CY++W+ S L ++
Sbjct: 197 ANKL--DMLSDDQLEEIG------WWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAII 248
Query: 178 GGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPL 233
G + I+ E L F+L CQ + GG P + D++H+ +G SL+ L P+
Sbjct: 249 GRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYDNLVPI 305
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 15/184 (8%)
Query: 6 NLASTYCALAILKAVG--YNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA+TY A+ L +G + A+I+ + MR ++Q +G F +H E D+R Y A
Sbjct: 94 HLATTYAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFR-MHDEGEIDVRACYTA 152
Query: 64 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123
++ +L + +IL+CQ+Y+GG PGSE+HGG T+C +A++ L+G +
Sbjct: 153 ISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEV-- 210
Query: 124 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGG-YNL 182
+ +DLP LL W + RQ + GFQGR NK D CY+FW G + +L +++
Sbjct: 211 ---------NRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSI 261
Query: 183 IDKE 186
ID++
Sbjct: 262 IDEQ 265
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 84 YILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSW 143
++ CQ +GG+ PG H TY AV +L +G E ++ S N + L +
Sbjct: 74 FLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGG-EKSLASINRNK-------LYGF 125
Query: 144 CLQRQAADGGFQGRANKPSDT--CY-AFWIGSVLRMLGGYNLIDKEALRG---FLLTCQS 197
+ + +GGF+ D CY A + SVL N++D E ++ F+L+CQ+
Sbjct: 126 MRRMKQPNGGFRMHDEGEIDVRACYTAISVASVL------NILDDELIKNVGDFILSCQT 179
Query: 198 QYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227
GG PG ++F G A L+ E
Sbjct: 180 YEGGLAGEPGSEAHGGYTFCGLAAMILIGE 209
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 74 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSS 133
+ ++R + ++ + +GGF + E Y A++ ++ ++D ++ KN
Sbjct: 115 ASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELI-KNVGDF 173
Query: 134 IIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL 193
I+ Q +GG G + Y F + + ++G N +D L +++
Sbjct: 174 ILSC----------QTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVV 223
Query: 194 TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227
Q + GF L D +SF+ A +LL+
Sbjct: 224 FRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQR 257
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 6 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 63
+LA+TY A+ L +G + ++I+ + + +R ++ G F +H E D+R Y A
Sbjct: 157 HLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFR-MHDMGEMDVRACYTA 215
Query: 64 AAICFLLEDWSGMDRERAKA---YILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGF 120
++ +L + MD E + YIL+CQ+Y+GG G PGSE+HGG TYC +A++ L+
Sbjct: 216 ISVASIL---NIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINE 272
Query: 121 IEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFW 169
++ ++L L++W + RQ + GFQGR NK D CY FW
Sbjct: 273 VDR-----------LNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFW 310
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL 140
A ++ CQ +GG+G PG H TY AV +L +G D LS +
Sbjct: 134 AIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVNALVTLG--GDKALSSINREKMS----- 186
Query: 141 LSWCLQRQAAD--GGFQGRANKPSDT--CY-AFWIGSVLRMLGGYNLIDKEALRG---FL 192
C R+ D GGF+ D CY A + S+L N++D E +G ++
Sbjct: 187 ---CFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASIL------NIMDDELTQGLGDYI 237
Query: 193 LTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227
L+CQ+ GG G PG +++ G A L+ E
Sbjct: 238 LSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINE 272
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 30/210 (14%)
Query: 24 FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDR---ER 80
++ I+ + + +L+ DGSF ++ E D R VY A + L+ MD E
Sbjct: 124 YSLIERDRLYDWLFSLKNPDGSFR-VNNEGESDARSVYAAVCVSSLVG--ISMDDPLFEG 180
Query: 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL 140
++ CQ+Y+GG P +E+HGG T+CA+A++ L+G +++ ++ L
Sbjct: 181 TLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDN-----------LNEIKL 229
Query: 141 LSWCLQRQ-AADGGFQGRANKPSDTCYAFWIG-SVLRMLGGY---------NLI-DKEAL 188
+W +QRQ A GF GR+NK D CY++W+G S + + GY NL + E L
Sbjct: 230 STWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLPNLFYNPEKL 289
Query: 189 RGFLLT-CQSQYGGFGKCPGDLPDLYHSFY 217
G++L CQS GG P PD YH+ Y
Sbjct: 290 LGYILQCCQSTSGGLRDKPPKRPDQYHTCY 319
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 129/262 (49%), Gaps = 35/262 (13%)
Query: 6 NLASTYCAL---AILKAVGYNFANIDSKSILTSMRNLQQHD-GSFM-----PIHFGAE-- 54
NL +T AL +L+ Y +D +S+ + Q+ D GSF+ + G+
Sbjct: 102 NLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVSCLDYKTNCGSSVD 161
Query: 55 -KDLRFVYCAAAICFLL-----EDWSG-MDRERAKAYILNCQSYDGGFGLTPGSESHGGG 107
DLRF Y A AI ++ ED+ +D E+ YI++ Q Y+G FG +E H G
Sbjct: 162 SDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGAFG--AHNEPHSGY 219
Query: 108 TYCAVASLRLMGFIED--NVLSKNTSSSIIDLPLLLSWCLQ---------RQAADGGFQG 156
T CA+++L L+ +E + ++T + ++ + C++ Q+ DGGFQG
Sbjct: 220 TSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQG 279
Query: 157 RANKPSDTCYAFWIGSVLRMLGG--YNLIDKEALRGFLL--TCQSQYGGFGKCPGDLPDL 212
R NK +DTCYAFW + L +L L E + +LL T ++ GGF K + DL
Sbjct: 280 RENKFADTCYAFWCLNSLHLLTKDWKMLCQTELVTNYLLDRTQKTLTGGFSKNDEEDADL 339
Query: 213 YHSFYGYTAFSLLEEPGLNPLC 234
YHS G A +L+E LC
Sbjct: 340 YHSCLGSAALALIEGKFNGELC 361
>sp|Q948R6|IMFS_LUFCY Isomultiflorenol synthase OS=Luffa cylindrica GN=IMS1 PE=1 SV=1
Length = 759
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 59 FVYCAAAIC-----FLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA 113
F C IC F+ + +S ++ YI N Q+ DGG+GL G S+ T
Sbjct: 124 FYVCPLLICMYIMGFMDKVFSPEHKKEMMRYIYNHQNEDGGWGLHVGGHSNMFCTTFNYI 183
Query: 114 SLRLMG 119
SLRL+G
Sbjct: 184 SLRLLG 189
>sp|P44945|EX5C_HAEIN Exodeoxyribonuclease V gamma chain OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recC PE=3
SV=1
Length = 1121
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 133 SIIDLPLLLSWCLQRQAADGGFQGRANKPSDTC-YAFWIGSVLRMLGGYNLIDKEALRGF 191
S+ DLPL+ W D G + K D + W + RM+ GY + +++ +
Sbjct: 500 SLADLPLVREW-----VTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQD 554
Query: 192 LLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227
L S YG G+ G+L +TA S L E
Sbjct: 555 SLGLNSSYGLKGELAGNLSHF------FTALSALHE 584
>sp|Q2R712|ACBSY_ORYSJ Achilleol B synthase OS=Oryza sativa subsp. japonica
GN=Os11g0285000 PE=1 SV=1
Length = 760
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 26 NIDSKSILTSMR-------NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDR 78
N+ ++IL+S+R LQ HDG + + G + + + + L+ ++
Sbjct: 93 NVTEETILSSLRRALNQYSTLQAHDGHWPGDYSGILFIMPLLIFSMHVTGTLDVVLSLEH 152
Query: 79 ERAK-AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMG 119
+R YI N Q+ DGG+G +S G+ A+L+L+G
Sbjct: 153 KREICRYIYNHQNEDGGWGTQVLGQSTMFGSCLNYATLKLLG 194
>sp|P0CP22|CCR4_CRYNJ Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=CCR4 PE=3 SV=1
Length = 744
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 199 YGGFGKCPGDLPDLYHSFYG-YTAFSLLEEPGLNPLCAELG---MTEFS 243
Y G PGD D YG YTA L GL CA +G MT F+
Sbjct: 626 YLSSGSIPGDHEDFMSHLYGRYTASGLKHHLGLRSACAGIGEMRMTNFT 674
>sp|P0CP23|CCR4_CRYNB Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=CCR4 PE=3 SV=1
Length = 744
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 199 YGGFGKCPGDLPDLYHSFYG-YTAFSLLEEPGLNPLCAELG---MTEFS 243
Y G PGD D YG YTA L GL CA +G MT F+
Sbjct: 626 YLSSGSIPGDHEDFMSHLYGRYTASGLKHHLGLRSACAGIGEMRMTNFT 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,624,521
Number of Sequences: 539616
Number of extensions: 4191293
Number of successful extensions: 7024
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6842
Number of HSP's gapped (non-prelim): 67
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)