Query 025813
Match_columns 247
No_of_seqs 142 out of 1308
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0366 Protein geranylgeranyl 100.0 1.4E-54 3E-59 359.9 20.0 227 3-242 91-318 (329)
2 PLN03201 RAB geranylgeranyl tr 100.0 1.5E-53 3.2E-58 376.9 23.9 228 3-243 81-309 (316)
3 COG5029 CAL1 Prenyltransferase 100.0 8.6E-54 1.9E-58 363.9 20.6 227 3-241 100-330 (342)
4 KOG0367 Protein geranylgeranyl 100.0 6.9E-53 1.5E-57 355.2 20.9 235 2-241 100-335 (347)
5 cd02895 GGTase-I Geranylgerany 100.0 9.8E-52 2.1E-56 364.1 23.7 216 2-225 87-307 (307)
6 PLN02710 farnesyltranstransfer 100.0 7.4E-51 1.6E-55 368.6 23.3 215 2-228 116-392 (439)
7 cd02894 GGTase-II Geranylgeran 100.0 1E-48 2.3E-53 342.6 23.6 210 3-225 75-287 (287)
8 cd02893 FTase Protein farnesyl 100.0 2.7E-48 5.8E-53 341.3 22.9 211 2-224 71-298 (299)
9 PLN02710 farnesyltranstransfer 100.0 1.5E-48 3.3E-53 353.5 21.4 216 2-229 67-285 (439)
10 cd02895 GGTase-I Geranylgerany 100.0 1.9E-47 4E-52 336.9 21.5 223 2-233 22-266 (307)
11 cd02893 FTase Protein farnesyl 100.0 4.8E-47 1E-51 333.3 22.0 216 2-229 22-241 (299)
12 cd02894 GGTase-II Geranylgeran 100.0 6.9E-47 1.5E-51 331.0 22.3 216 2-230 25-243 (287)
13 PLN03201 RAB geranylgeranyl tr 100.0 8.9E-47 1.9E-51 333.7 22.9 215 3-230 33-247 (316)
14 cd02890 PTase Protein prenyltr 100.0 5.9E-46 1.3E-50 324.9 23.4 212 2-225 72-286 (286)
15 cd02890 PTase Protein prenyltr 100.0 5E-45 1.1E-49 319.1 21.8 215 2-228 22-240 (286)
16 KOG0365 Beta subunit of farnes 100.0 4.2E-45 9.1E-50 313.4 15.5 216 3-230 145-374 (423)
17 KOG0366 Protein geranylgeranyl 100.0 2.3E-41 4.9E-46 281.1 17.2 219 1-232 41-259 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 2.3E-37 5E-42 263.5 14.5 217 2-230 50-270 (342)
19 KOG0365 Beta subunit of farnes 100.0 1.4E-34 3E-39 248.7 15.4 216 3-230 96-315 (423)
20 KOG0367 Protein geranylgeranyl 100.0 6.9E-33 1.5E-37 234.2 18.8 219 2-232 34-277 (347)
21 cd00688 ISOPREN_C2_like This g 99.9 5.2E-26 1.1E-30 196.2 20.3 208 4-224 79-299 (300)
22 cd00688 ISOPREN_C2_like This g 99.9 3.5E-24 7.5E-29 184.8 20.4 214 3-228 23-254 (300)
23 TIGR03463 osq_cycl 2,3-oxidosq 99.9 5.1E-22 1.1E-26 190.1 17.5 221 6-230 305-582 (634)
24 TIGR01507 hopene_cyclase squal 99.9 2.3E-21 5E-26 185.5 21.3 215 4-229 313-575 (635)
25 PLN03012 Camelliol C synthase 99.9 1.6E-21 3.4E-26 187.2 17.7 220 4-230 415-698 (759)
26 PLN02993 lupeol synthase 99.9 2E-21 4.3E-26 186.8 18.1 222 4-229 415-697 (763)
27 cd02892 SQCY_1 Squalene cyclas 99.9 1.9E-20 4.2E-25 180.0 21.0 221 3-228 304-580 (634)
28 PF13249 Prenyltrans_2: Prenyl 99.9 1.3E-21 2.7E-26 147.7 9.4 109 82-204 1-113 (113)
29 cd02889 SQCY Squalene cyclase 99.8 7.3E-20 1.6E-24 163.8 19.3 219 5-228 23-294 (348)
30 TIGR01507 hopene_cyclase squal 99.8 1.6E-20 3.5E-25 179.7 14.8 191 4-205 377-599 (635)
31 TIGR01787 squalene_cyclas squa 99.8 1.3E-19 2.9E-24 173.3 19.6 217 4-229 293-565 (621)
32 PF13249 Prenyltrans_2: Prenyl 99.8 1.7E-20 3.8E-25 141.4 10.3 110 33-156 1-113 (113)
33 TIGR03463 osq_cycl 2,3-oxidosq 99.8 4.1E-20 9E-25 177.0 15.1 193 3-206 369-606 (634)
34 cd02892 SQCY_1 Squalene cyclas 99.8 9.3E-20 2E-24 175.3 14.0 192 4-206 371-606 (634)
35 cd02889 SQCY Squalene cyclase 99.8 1.7E-19 3.7E-24 161.5 14.1 191 5-206 89-320 (348)
36 TIGR01787 squalene_cyclas squa 99.8 2.3E-19 5E-24 171.7 13.7 192 5-206 363-590 (621)
37 PLN03012 Camelliol C synthase 99.8 5.1E-18 1.1E-22 163.1 16.4 192 4-205 482-723 (759)
38 COG1689 Uncharacterized protei 99.8 2.4E-17 5.2E-22 134.6 16.4 199 4-226 32-272 (274)
39 PLN02993 lupeol synthase 99.7 2.2E-17 4.8E-22 159.1 13.1 145 1-156 557-722 (763)
40 cd02897 A2M_2 Proteins similar 99.6 3.2E-14 6.9E-19 124.9 17.3 212 5-223 18-290 (292)
41 KOG0497 Oxidosqualene-lanoster 99.6 1.1E-14 2.5E-19 136.0 13.4 221 5-232 415-699 (760)
42 COG1689 Uncharacterized protei 99.6 1.3E-14 2.9E-19 118.6 12.1 183 26-231 5-230 (274)
43 cd02896 complement_C3_C4_C5 Pr 99.5 1.5E-12 3.3E-17 114.6 18.1 179 30-226 55-259 (297)
44 PF00432 Prenyltrans: Prenyltr 99.4 1.7E-13 3.7E-18 86.2 5.1 44 183-226 1-44 (44)
45 KOG0497 Oxidosqualene-lanoster 99.4 4.7E-13 1E-17 125.3 10.1 144 1-155 556-720 (760)
46 PF00432 Prenyltrans: Prenyltr 99.4 4.1E-13 8.9E-18 84.5 4.4 44 135-178 1-44 (44)
47 cd02896 complement_C3_C4_C5 Pr 99.4 2.3E-11 4.9E-16 107.2 16.2 187 3-223 77-295 (297)
48 PF13243 Prenyltrans_1: Prenyl 99.3 9.1E-13 2E-17 98.7 3.4 105 30-149 2-107 (109)
49 PF13243 Prenyltrans_1: Prenyl 99.3 3.9E-12 8.5E-17 95.2 4.4 106 78-197 1-107 (109)
50 cd02891 A2M_like Proteins simi 99.1 5E-09 1.1E-13 91.0 17.7 172 30-224 52-242 (282)
51 cd02897 A2M_2 Proteins similar 99.1 4E-09 8.8E-14 92.6 15.5 138 71-226 37-193 (292)
52 cd02891 A2M_like Proteins simi 99.0 6.9E-09 1.5E-13 90.1 13.3 132 78-227 51-192 (282)
53 PF07678 A2M_comp: A-macroglob 98.9 4.3E-09 9.3E-14 90.3 7.6 178 33-223 3-242 (246)
54 COG1657 SqhC Squalene cyclase 98.7 6.1E-08 1.3E-12 90.0 10.5 178 43-233 249-461 (517)
55 COG1657 SqhC Squalene cyclase 98.5 9.4E-08 2E-12 88.8 3.5 145 1-158 323-482 (517)
56 PF07678 A2M_comp: A-macroglob 98.2 3.1E-05 6.8E-10 66.4 13.5 142 2-157 22-231 (246)
57 TIGR02474 pec_lyase pectate ly 97.7 0.00033 7.2E-09 61.1 10.6 142 56-197 42-220 (290)
58 PLN02279 ent-kaur-16-ene synth 97.0 0.024 5.3E-07 56.2 14.8 90 138-234 245-337 (784)
59 PLN02592 ent-copalyl diphospha 97.0 0.026 5.6E-07 56.0 14.8 89 138-230 285-378 (800)
60 TIGR02474 pec_lyase pectate ly 96.9 0.0095 2.1E-07 52.1 10.3 134 9-151 45-222 (290)
61 KOG1366 Alpha-macroglobulin [P 95.3 0.39 8.5E-06 50.8 13.7 91 7-98 945-1046(1436)
62 PF01122 Cobalamin_bind: Eukar 94.3 0.19 4E-06 44.8 7.4 120 54-204 183-312 (326)
63 PF05817 Ribophorin_II: Oligos 94.2 5.9 0.00013 38.8 19.0 198 3-233 45-276 (636)
64 PF09492 Pec_lyase: Pectic aci 93.5 0.11 2.3E-06 45.6 4.3 142 56-197 37-215 (289)
65 PLN02592 ent-copalyl diphospha 91.7 0.64 1.4E-05 46.4 7.6 80 30-117 75-158 (800)
66 PF05817 Ribophorin_II: Oligos 91.0 7.4 0.00016 38.1 14.0 132 54-227 46-178 (636)
67 PF09492 Pec_lyase: Pectic aci 90.4 0.71 1.5E-05 40.5 5.8 83 104-198 37-147 (289)
68 PLN02279 ent-kaur-16-ene synth 87.3 1.7 3.7E-05 43.5 6.7 83 29-120 35-121 (784)
69 KOG1366 Alpha-macroglobulin [P 84.6 2.5 5.5E-05 44.9 6.8 89 59-155 947-1044(1436)
70 PF01122 Cobalamin_bind: Eukar 81.0 11 0.00024 33.7 8.5 84 5-97 184-279 (326)
71 TIGR01577 oligosac_amyl oligos 57.3 1.9E+02 0.0042 28.1 15.2 36 9-47 299-334 (616)
72 PF07470 Glyco_hydro_88: Glyco 30.3 97 0.0021 27.4 4.9 68 79-153 218-294 (336)
73 PF15144 DUF4576: Domain of un 30.2 33 0.00072 23.9 1.4 33 173-208 49-81 (88)
74 COG2373 Large extracellular al 27.2 72 0.0016 35.0 3.9 41 78-118 1201-1242(1621)
75 TIGR01577 oligosac_amyl oligos 26.1 5.8E+02 0.013 24.8 9.8 68 31-98 501-585 (616)
76 PF10022 DUF2264: Uncharacteri 24.1 5.5E+02 0.012 23.4 16.1 195 24-236 129-355 (361)
77 TIGR01535 glucan_glucosid gluc 21.7 97 0.0021 30.6 3.4 39 57-97 297-335 (648)
No 1
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-54 Score=359.91 Aligned_cols=227 Identities=37% Similarity=0.727 Sum_probs=218.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAK 82 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~ 82 (247)
++||+..|.+|+|+|.+++ .++.+|+++...||...|+|||+|..-.| +|.|+|++|||++.|++|+..+.+++++++
T Consensus 91 hd~hll~TlsAvQiL~~yd-si~~~d~d~v~~yi~gLq~edGsF~gD~w-GEvDTRfs~~av~~L~lLg~ld~~nve~aV 168 (329)
T KOG0366|consen 91 HDPHLLYTLSAVQILALYD-SINVLDRDKVASYIKGLQQEDGSFSGDIW-GEVDTRFSYCAVACLALLGKLDTINVEKAV 168 (329)
T ss_pred CChHHHHHHHHHHHHHHHc-ccccccHHHHHHHHHhhcCcCCcccCCcc-cccchhhhHHHHHHHHHHhhHHHhhHHHHH
Confidence 5799999999999999999 47788999999999999999999987666 899999999999999999998899999999
Q ss_pred HHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCC
Q 025813 83 AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 162 (247)
Q Consensus 83 ~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~ 162 (247)
+|+++|-|-|||||..|+.|||.+..||++.+|+++|+.+ .+|++++-.||..+|.+.||.+|||.|.+
T Consensus 169 d~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~-----------~vd~d~lgwwlceRQ~~sGGLNGRpeKlp 237 (329)
T KOG0366|consen 169 DFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLH-----------LVDRDLLGWWLCERQLPSGGLNGRPEKLP 237 (329)
T ss_pred HHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchh-----------hcCHHHHHHHHHhccCCCCCCCCCcccCc
Confidence 9999999999999999999999999999999999999987 78999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-CCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 025813 163 DTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241 (247)
Q Consensus 163 D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~~~~ 241 (247)
|+||+||++++|.++|++..+|.+++.+||+.||. +.|||++||+..+|++||++++++|+++|+++++++||.+|||+
T Consensus 238 DVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~ 317 (329)
T KOG0366|consen 238 DVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPK 317 (329)
T ss_pred chhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcH
Confidence 99999999999999999999999999999999998 68999999999999999999999999999999999999999997
Q ss_pred c
Q 025813 242 F 242 (247)
Q Consensus 242 ~ 242 (247)
.
T Consensus 318 ~ 318 (329)
T KOG0366|consen 318 E 318 (329)
T ss_pred H
Confidence 4
No 2
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.5e-53 Score=376.93 Aligned_cols=228 Identities=36% Similarity=0.678 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAK 82 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~ 82 (247)
+++|+..||+|+++|.+++ .++.+|++++++||.++|++||||...+ +++.|++.+|||++++.+++..+.+++++++
T Consensus 81 ~~~h~~~Ty~al~~L~ll~-~~~~id~~~~~~~l~s~Q~~dGgF~~~~-~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~ 158 (316)
T PLN03201 81 HDPHILYTLSAVQILALFD-RLDLLDADKVASYVAGLQNEDGSFSGDE-WGEIDTRFSYCALCCLSLLKRLDKINVEKAV 158 (316)
T ss_pred CcccHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHhcCCCCCccCCC-CCCccHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 4689999999999999997 4677899999999999999999998644 4899999999999999999977778899999
Q ss_pred HHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCC
Q 025813 83 AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 162 (247)
Q Consensus 83 ~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~ 162 (247)
+||++||++||||+..|+.|+|..+||||+++|.++|..+ .+|++++.+||.++|.++|||++||+|++
T Consensus 159 ~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~-----------~~d~~~l~~wL~~rQ~~~GGf~grp~k~~ 227 (316)
T PLN03201 159 DYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLH-----------HVDKDLLGWWLCERQVKSGGLNGRPEKLP 227 (316)
T ss_pred HHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccc-----------cCCHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999765 56889999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 025813 163 DTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241 (247)
Q Consensus 163 D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~~~~ 241 (247)
|+||+||++++|.+|+....+|.+++.+||++||+. .|||+++|++.||++||||++++|+++++.++.++||.+|+|.
T Consensus 228 D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~p~~~~~~ 307 (316)
T PLN03201 228 DVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAYALPV 307 (316)
T ss_pred chHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCCCcccCCH
Confidence 999999999999999988889999999999999985 7999999999999999999999999999999999999999996
Q ss_pred cc
Q 025813 242 FS 243 (247)
Q Consensus 242 ~~ 243 (247)
-.
T Consensus 308 ~~ 309 (316)
T PLN03201 308 DV 309 (316)
T ss_pred HH
Confidence 43
No 3
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-54 Score=363.87 Aligned_cols=227 Identities=39% Similarity=0.699 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 3 NGSNLASTYCALAILKAVGY--NFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~--~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
+.+|+.+||+||++|.+++. -+..++|+.+..||.++|+|||+|..... +++|.+..|+|+.+++++|..+..+.+.
T Consensus 100 ~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~-gevDtr~~Y~al~ilsllg~~~~~~~e~ 178 (342)
T COG5029 100 QDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLE-GEVDTRFLYIALSILSLLGDLDKELFEG 178 (342)
T ss_pred cchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccC-CcchHHHHHHHHHHHHHHhhcchhhhHH
Confidence 57899999999999999983 35667888999999999999999987665 8999999999999999999888889999
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCC-HHHHHHHHHhcCCCCCccccccC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIID-LPLLLSWCLQRQAADGGFQGRAN 159 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Q~~dGgf~~~~~ 159 (247)
.++||++|||.|||||..|+.|+|.++|+||+++|+++++.+ .++ +++++.||.++|.+.|||+||++
T Consensus 179 ~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld-----------~ls~~E~l~~Wl~~RQ~ssgGl~GR~n 247 (342)
T COG5029 179 AVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLD-----------KLSDVEKLIRWLAERQLSSGGLNGRSN 247 (342)
T ss_pred HHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHcccccCCcCCCcc
Confidence 999999999999999999999999999999999999999986 455 79999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCcccc
Q 025813 160 KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELG 238 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~ 238 (247)
|.+|+||+||++++|++|+....+|.+++.+||+.||.+ .|||+++|+.++|++||++++++|++++..++.||||.+|
T Consensus 248 Kl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~l~~v~p~~c 327 (342)
T COG5029 248 KLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPVDPIYC 327 (342)
T ss_pred cCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCCCCCCccc
Confidence 999999999999999999998899999999999998876 8999999999999999999999999999999999999999
Q ss_pred ccc
Q 025813 239 MTE 241 (247)
Q Consensus 239 ~~~ 241 (247)
||+
T Consensus 328 lP~ 330 (342)
T COG5029 328 LPQ 330 (342)
T ss_pred CCH
Confidence 996
No 4
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-53 Score=355.16 Aligned_cols=235 Identities=52% Similarity=0.941 Sum_probs=221.8
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERA 81 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~ 81 (247)
+|.||++.||.++..|..+|.+++.+||+.+++++..+|+|||+|.+.+.|+++|+|++|||++++.||+.++.+|++++
T Consensus 100 ~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~ 179 (347)
T KOG0367|consen 100 YNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKL 179 (347)
T ss_pred CcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHH
Confidence 68899999999999999999999999999999999999999999998888899999999999999999998889999999
Q ss_pred HHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCC
Q 025813 82 KAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP 161 (247)
Q Consensus 82 ~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~ 161 (247)
+.||+++|+.||||+..|+.|+|..+|||||++|+++|+.-++-. ++..+++++++|++++|..+|||+||++|+
T Consensus 180 ~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l-----~~~~~~erlirWli~RQ~~sgGfqGR~NKp 254 (347)
T KOG0367|consen 180 IGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEEL-----SNTSKVERLIRWLIQRQVSSGGFQGRTNKP 254 (347)
T ss_pred HHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhh-----ccccCHHHHHHHHHHHhhccCCcCCCCCCC
Confidence 999999999999999999999999999999999999999733222 124568999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC-CCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 025813 162 SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQY-GGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMT 240 (247)
Q Consensus 162 ~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~~~ 240 (247)
+|+||+||+.++|.+|+....++.+....||.+||..- |||++-|+..||+.|||++++||++++++.+.||+|.+-|+
T Consensus 255 ~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~~~~v~p~l~~s 334 (347)
T KOG0367|consen 255 VDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKGLSPVCPSLNMS 334 (347)
T ss_pred chhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCCCCCCCcccccc
Confidence 99999999999999999988899999999999999875 99999999999999999999999999999999999999887
Q ss_pred c
Q 025813 241 E 241 (247)
Q Consensus 241 ~ 241 (247)
.
T Consensus 335 ~ 335 (347)
T KOG0367|consen 335 M 335 (347)
T ss_pred H
Confidence 5
No 5
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=9.8e-52 Score=364.12 Aligned_cols=216 Identities=49% Similarity=0.883 Sum_probs=199.2
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccC--CCCCcchHHHHHHHHHHHHhcCCC--ccc
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIH--FGAEKDLRFVYCAAAICFLLEDWS--GMD 77 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~~~d~~~ty~al~~l~ll~~~~--~~~ 77 (247)
++.+|+..||+|+++|.+|+.+.+.+|++++++||+++|++||||...+ .++++|++.||||++++.+|+..+ .++
T Consensus 87 ~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d 166 (307)
T cd02895 87 YDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDID 166 (307)
T ss_pred CCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcccccc
Confidence 3689999999999999999976666899999999999999999998765 358999999999999999999765 578
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccc
Q 025813 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 157 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~ 157 (247)
++++++||++||++||||+..|+.|+|+.+||||+++|.+++..+. .+.++++++++||.++|+.+|||++|
T Consensus 167 ~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~--------~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 167 KEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEE--------LSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred HHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccc--------cccccHHHHHHHHHHhcCCCCCcCCC
Confidence 9999999999999999999999999999999999999999998641 01468999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-CCCCcCCCCCCCccHHHHHHHHHHHHhc
Q 025813 158 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLL 225 (247)
Q Consensus 158 ~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~d~~~T~~al~~L~ll 225 (247)
|++++|+||+||++++|.+|+....+|.+++.+||++||+ .+|||+++|++.||++||||++++|+++
T Consensus 239 ~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 239 PNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 9999999999999999999998888999999999999885 5899999999999999999999999875
No 6
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=7.4e-51 Score=368.63 Aligned_cols=215 Identities=35% Similarity=0.671 Sum_probs=198.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHH
Q 025813 2 HNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRE 79 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~ 79 (247)
.+.+|+..||+|+.+|.+||.+ ++.+|++++++||+++|++||||...+ ++++|++.||||++++.+|+..+..+.+
T Consensus 116 g~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~-~gE~D~R~tYcAlail~LL~~l~~~~~e 194 (439)
T PLN02710 116 GQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHD-GGEMDVRACYTAISVASLLNILDDELVK 194 (439)
T ss_pred CCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCC-CCCCCcCCcHHHHHHHHHhCcCchhhHH
Confidence 3679999999999999999963 677899999999999999999998754 5899999999999999999987777899
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccC
Q 025813 80 RAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN 159 (247)
Q Consensus 80 ~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~ 159 (247)
++++||++||+.||||++.|+.|+|..+||||+++|.++|..+ .+|.+++++||.++|..+|||+|||+
T Consensus 195 ~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~-----------~id~~~l~~WL~~rQ~~~GGF~GR~n 263 (439)
T PLN02710 195 GVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD-----------RLDLPSLINWVVFRQGVEGGFQGRTN 263 (439)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCcc-----------ccCHHHHHHHHHHhcCcCCCcCCCCC
Confidence 9999999999999999999999999999999999999999875 67899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCCC----------------------------------------------------------
Q 025813 160 KPSDTCYAFWIGSVLRMLGGYN---------------------------------------------------------- 181 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~~---------------------------------------------------------- 181 (247)
|.+|+||+||++++|+||++..
T Consensus 264 Kl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
T PLN02710 264 KLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMG 343 (439)
T ss_pred CCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998531
Q ss_pred -CCCHHHHHHHHHhcC-CCCCCcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 182 -LIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 182 -~~~~~~~~~~L~~~Q-~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
.+|.+++.+||+.|| ..+|||+++|++.+|.+||+|++++|+++++.
T Consensus 344 ~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~ 392 (439)
T PLN02710 344 PLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYS 392 (439)
T ss_pred cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhc
Confidence 256778999998765 56899999999999999999999999999885
No 7
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1e-48 Score=342.55 Aligned_cols=210 Identities=38% Similarity=0.765 Sum_probs=196.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
+++|+..||+|+.+|.+++. ++.++ ++++++||+++|++||||...+ ++++|++.||+|++++.+++..+.+++++
T Consensus 75 ~~~~~~~t~~a~~~L~ll~~-~~~i~~~~~~~~~~i~~~q~~dGgf~~~~-~~e~d~~~ty~a~~~l~ll~~~~~i~~~~ 152 (287)
T cd02894 75 HDPHILSTLSAIQILALYDL-LNKIDENKEKIAKFIKGLQNEDGSFSGDK-WGEVDTRFSYCAVLCLTLLGKLDLIDVDK 152 (287)
T ss_pred CcchHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHcCCCCCeecCC-CCCchHHHHHHHHHHHHHhCCcchhhHHH
Confidence 46899999999999999973 45567 8999999999999999998755 48999999999999999999777789999
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK 160 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~ 160 (247)
+++||++||++||||+..|+.++|+.+||||+++|.++|..+ .++++++++||.++|.++|||+++|++
T Consensus 153 ~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~-----------~~~~~~~~~~L~~~q~~~GGf~gr~~k 221 (287)
T cd02894 153 AVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD-----------LIDRDRLGWWLCERQLPSGGLNGRPEK 221 (287)
T ss_pred HHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc-----------ccCHHHHHHHHHHhCCCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999875 468999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC-CCCCCcCCCCCCCccHHHHHHHHHHHHhc
Q 025813 161 PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLL 225 (247)
Q Consensus 161 ~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~p~~~~d~~~T~~al~~L~ll 225 (247)
++|+||+||++++|++|+....+|.+++.+||++|| ..+|||+++|++.+|++||+|++++|+++
T Consensus 222 ~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 222 LPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred CCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 999999999999999999877889999999999999 47899999999999999999999999975
No 8
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.7e-48 Score=341.27 Aligned_cols=211 Identities=42% Similarity=0.774 Sum_probs=195.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHH
Q 025813 2 HNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRE 79 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~ 79 (247)
++++|+..||+|+++|.+++.+ ++.++++++++||+++|++||||...+ ++++|++.||||++++.+|+..+..+++
T Consensus 71 ~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~-~~e~D~r~tycava~~~lL~~~~~~~~~ 149 (299)
T cd02893 71 GQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHV-GGEVDVRGTYCAISVASLLNILTDELFE 149 (299)
T ss_pred CCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCC-CCCchHhHHHHHHHHHHHhCCCchhhHH
Confidence 4689999999999999999963 566899999999999999999999765 5899999999999999999987777899
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-CCcccccc
Q 025813 80 RAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRA 158 (247)
Q Consensus 80 ~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-dGgf~~~~ 158 (247)
++++||++||++||||+..|+.|+|..+||||+++|.+++..+ .+|++++++||.++|.+ +|||++||
T Consensus 150 ~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~-----------~~d~~~l~~wl~~~q~~~~GGf~grp 218 (299)
T cd02893 150 GVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPD-----------KLDLESLLRWLVARQMRFEGGFQGRT 218 (299)
T ss_pred HHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCcc-----------ccCHHHHHHHHHhhcCCCCCCcCCCC
Confidence 9999999999999999999999999999999999999999865 57899999999999988 99999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCC-------------CCCCHHHHHHHHHhc-CCCCCCcCCCCCCCccHHHHHHHHHHHHh
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGY-------------NLIDKEALRGFLLTC-QSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~-------------~~~~~~~~~~~L~~~-Q~~~GGf~~~p~~~~d~~~T~~al~~L~l 224 (247)
+|++|+||+||++++|+++++. ..+|.+++.+||+.| |+.+|||+++|++.+|++||++++++|++
T Consensus 219 ~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 219 NKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence 9999999999999999999863 357899999999965 56789999999999999999999999987
No 9
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.5e-48 Score=353.52 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=202.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcC---CCcccH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDR 78 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~---~~~~~~ 78 (247)
.|.++++.|||++.+|.+||.+++..+++++++||++||++||||...+ +.++|+..||+|+.+|.+|+. ++.+++
T Consensus 67 lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~p-g~~~hl~~TY~Av~~L~iLg~~~~l~~Idr 145 (439)
T PLN02710 67 LDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGP-GQLPHLATTYAAVNTLVTIGGERALSSINR 145 (439)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCC-CCCccHHHHHHHHHHHHHcCCchhhcccCH
Confidence 5778999999999999999976666678999999999999999999765 578999999999999999985 356799
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
+++++||++||++||||+..++.|+|++.||||++++.+++..+ ..+.+++++||.+||+.||||+++|
T Consensus 146 ~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~-----------~~~~e~~~~~I~scQ~~dGGF~g~P 214 (439)
T PLN02710 146 EKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILD-----------DELVKGVGDYILSCQTYEGGIGGEP 214 (439)
T ss_pred HHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCc-----------hhhHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999998764 3578999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCC
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
++|+|++||||++++|.+|+..+.+|.+++++||.+||+.+|||++||+|.+|.||+||++++|+++++..
T Consensus 215 ~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~ 285 (439)
T PLN02710 215 GAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLV 285 (439)
T ss_pred CCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHh
Confidence 99999999999999999999888899999999999999999999999999999999999999999999863
No 10
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=1.9e-47 Score=336.93 Aligned_cols=223 Identities=25% Similarity=0.273 Sum_probs=201.3
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHhcc----cCCCCccccCCC---------CCcchHHHHHHHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYNF--ANIDSKSILTSMRNLQ----QHDGSFMPIHFG---------AEKDLRFVYCAAAI 66 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~--~~~~~~~~i~~l~~~q----~~dGgf~~~~~~---------~~~d~~~ty~al~~ 66 (247)
+|.++++.|||++.+|.+||.+. ...+++++++||+++| ++||||...+.. +++|++.||+|+.+
T Consensus 22 ~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~ 101 (307)
T cd02895 22 LDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLS 101 (307)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHH
Confidence 57899999999999999999755 4578899999999999 999999875521 47999999999999
Q ss_pred HHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCC---CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHH
Q 025813 67 CFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTP---GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLS 142 (247)
Q Consensus 67 l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p---~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 142 (247)
|.+|+.. +.++++++++||++||++||||+..+ +.|+|++.|||||++|.+++..+++ .++++++++
T Consensus 102 L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~---------~~d~~~li~ 172 (307)
T cd02895 102 LLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEE---------DIDKEKLID 172 (307)
T ss_pred HHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccc---------cccHHHHHH
Confidence 9999853 35689999999999999999999997 8899999999999999999976421 368999999
Q ss_pred HHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCC---CCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHH
Q 025813 143 WCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN---LIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGY 219 (247)
Q Consensus 143 ~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~---~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al 219 (247)
||.++|++||||...|+.|+|++||||++++|.+|+... .++.+++++||.+||+.+|||+++|++++|.+||||++
T Consensus 173 ~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~ 252 (307)
T cd02895 173 YIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVG 252 (307)
T ss_pred HHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHH
Confidence 999999999999999999999999999999999999864 68899999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC
Q 025813 220 TAFSLLEEPGLNPL 233 (247)
Q Consensus 220 ~~L~ll~~~~~~~~ 233 (247)
++|.++++....+.
T Consensus 253 a~L~iL~~~~~id~ 266 (307)
T cd02895 253 ASLKLLDAFQLIDF 266 (307)
T ss_pred HHHHHcCcccccCH
Confidence 99999998755443
No 11
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.8e-47 Score=333.34 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=200.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcC---CCcccH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDR 78 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~---~~~~~~ 78 (247)
.|.++++.|||++.+|.+|+..+...+++++++||+++|++||||...+ +.++|+..||+|+.+|.+++. .+.+++
T Consensus 22 ~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~-~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~ 100 (299)
T cd02893 22 LDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGP-GQLPHLATTYAAVNALAIIGTEEAYDVIDR 100 (299)
T ss_pred cccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCC-CCCccHHHHHHHHHHHHHhCCchhhhHhhH
Confidence 4678999999999999999975556678999999999999999999755 478999999999999999986 345788
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
+++++||++||++||||+..|+.|+|++.||||++++.+++..+ ..+++++++||.+||++||||+++|
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~-----------~~~~~~~~~~l~~cQ~~dGGF~~~p 169 (299)
T cd02893 101 EALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILT-----------DELFEGVAEYILSCQTYEGGFGGVP 169 (299)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCc-----------hhhHHHHHHHHHHcCCCCCCcCCCC
Confidence 99999999999999999999999999999999999999998764 3568999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcCCCCCCCccHHHHHHHHHHHHhcCCCC
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
++++|++||||++++|.+|+..+.++.+++++||.+||.. +|||+++|++.+|+|||||++++|.++++..
T Consensus 170 ~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~ 241 (299)
T cd02893 170 GNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAIL 241 (299)
T ss_pred CCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988788999999999999988 9999999999999999999999999998864
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=6.9e-47 Score=331.05 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=199.8
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcc-cCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCccc--H
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQ-QHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMD--R 78 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~--~ 78 (247)
+|.++++.|||++.+|.+||. .+.++++++++||+++| +++|+|...+ +.++++..||+|+.++.+++..+.++ +
T Consensus 25 ~~~~r~~~~y~~l~~l~lL~~-~~~~~~~~~i~fl~~~q~~~~GgF~~~~-~~~~~~~~t~~a~~~L~ll~~~~~i~~~~ 102 (287)
T cd02894 25 TEHLRMSGIYWGLTALDLLGQ-LERLNREEIIEFVKSCQDNEDGGFGGSP-GHDPHILSTLSAIQILALYDLLNKIDENK 102 (287)
T ss_pred HHhhHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCCCCCC-CCcchHHHHHHHHHHHHHhhhhhhccHHH
Confidence 567899999999999999995 55678999999999999 7899999765 46789999999999999997655566 8
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
+++++||++||++||||+..|+.++|+.+||+|+++|.+++..+ .++++++++||.++|++||||++++
T Consensus 103 ~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-----------~i~~~~~~~~l~~~q~~dGGF~~~~ 171 (287)
T cd02894 103 EKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLD-----------LIDVDKAVDYLLSCYNFDGGFGCRP 171 (287)
T ss_pred HHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcc-----------hhhHHHHHHHHHHcCCCCCCcCCCC
Confidence 99999999999999999999999999999999999999998654 5689999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
++++|++||||++++|.+|+..+.++++++++||.+||+.+|||+++|++++|++||||++++|.+++....
T Consensus 172 ~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~ 243 (287)
T cd02894 172 GAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHW 243 (287)
T ss_pred CCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccc
Confidence 999999999999999999998878899999999999999999999999999999999999999999998743
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=8.9e-47 Score=333.70 Aligned_cols=215 Identities=21% Similarity=0.368 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAK 82 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~ 82 (247)
+...++.+||++.+|.+|+. .+.++++++++||.+||++||||...+ +.++|+..||+|+.+|.+++..+.+++++++
T Consensus 33 ~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~-~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~ 110 (316)
T PLN03201 33 EHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNT-GHDPHILYTLSAVQILALFDRLDLLDADKVA 110 (316)
T ss_pred ccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCC-CCcccHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 56788899999999999995 566789999999999999999999765 4678999999999999999877778899999
Q ss_pred HHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCC
Q 025813 83 AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 162 (247)
Q Consensus 83 ~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~ 162 (247)
+||.++|++||||+..++.|+|++.||||+++|.+++..+ .++++++++||.+||++||||+++|++|+
T Consensus 111 ~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~-----------~i~~~~~~~~i~scq~~dGGF~~~p~~es 179 (316)
T PLN03201 111 SYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD-----------KINVEKAVDYIVSCKNFDGGFGCTPGGES 179 (316)
T ss_pred HHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccc-----------hhHHHHHHHHHHHhcCCCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999998754 46789999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 163 DTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 163 D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
|++||||++++|.+++..+.+|.+++++||.+||..+|||+++|++.+|.|||||++++|.++++...
T Consensus 180 h~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~ 247 (316)
T PLN03201 180 HAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHW 247 (316)
T ss_pred ccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccc
Confidence 99999999999999998888899999999999999999999999999999999999999999998754
No 14
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=5.9e-46 Score=324.95 Aligned_cols=212 Identities=50% Similarity=0.907 Sum_probs=197.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
.+++++..||+|+.+|.+++.+ .+.++++++++||+++|++||||...+ ++++|++.||+++.++.+++.....++++
T Consensus 72 ~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 150 (286)
T cd02890 72 GQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDL-GGEVDTRFVYCALSILSLLNILTDIDKEK 150 (286)
T ss_pred CCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCC-CCCchHHHHHHHHHHHHHhCCchhhhHHH
Confidence 3689999999999999999964 466789999999999999999998655 48899999999999999999766678999
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCC-ccccccC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG-GFQGRAN 159 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dG-gf~~~~~ 159 (247)
+++||++||++||||+..|+.++|+..||||+++|.++|..+ .++++++++||.++|+++| ||.++++
T Consensus 151 ~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~-----------~~~~~~~~~~L~~~q~~~ggGf~g~~~ 219 (286)
T cd02890 151 LIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD-----------LIDKERLLRWLVERQLASGGGFNGRPN 219 (286)
T ss_pred HHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCc-----------ccCHHHHHHHHHHhCCCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999875 4689999999999999988 9999999
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHH-hcCCCCCCcCCCCCCCccHHHHHHHHHHHHhc
Q 025813 160 KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL-TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLL 225 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~-~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll 225 (247)
+++|+||+||++++|.+|+...+++.+++.+||. .+|..+|||+++|++.+|++||+|++++|+++
T Consensus 220 ~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 220 KLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred CCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 9999999999999999999876789999999999 67889999999999999999999999999874
No 15
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=5e-45 Score=319.11 Aligned_cols=215 Identities=30% Similarity=0.426 Sum_probs=201.4
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcc-cCCCCccccCCCCCcchHHHHHHHHHHHHhcC--CCcccH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQ-QHDGSFMPIHFGAEKDLRFVYCAAAICFLLED--WSGMDR 78 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~--~~~~~~ 78 (247)
+++++++.|||++.+|.+||..++..+++++++||+++| ++||+|...+ ++++|+..||+|+.++.+++. .+..++
T Consensus 22 ~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~-~~~~~~~~T~~al~~l~llg~~~~~~~~~ 100 (286)
T cd02890 22 LDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGP-GQDPHLASTYAAVLSLAILGDDALSRIDR 100 (286)
T ss_pred HHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCC-CCCccHHHHHHHHHHHHHcCccccchhhH
Confidence 578899999999999999997666778999999999999 9999998754 478999999999999999997 467788
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
+++++||.++|++||||+..|..++|+..||+|+++|.+++... .++++++++||.++|++||||+++|
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~-----------~~~~~~~~~~l~~~Q~~dGGf~~~~ 169 (286)
T cd02890 101 EKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT-----------DIDKEKLIDYILSCQNYDGGFGGVP 169 (286)
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch-----------hhhHHHHHHHHHHhCCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999864 3578999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC-CcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYG-GFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~G-Gf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
++++|+++|||++++|.+|+..+.++++++++||.+||+.+| ||+++|++.+|++||||++++|.+++..
T Consensus 170 ~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~ 240 (286)
T cd02890 170 GAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRL 240 (286)
T ss_pred CCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccc
Confidence 999999999999999999998878899999999999999987 9999999999999999999999999987
No 16
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=313.43 Aligned_cols=216 Identities=38% Similarity=0.712 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 3 NGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
+.||++.||+||.+|-++|.+ ++.|||+++.+||.++++|||||. ...++|.|+|.+|||+....+++.+..+-.+-
T Consensus 145 Ql~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr-mh~~GE~DvRs~YcA~svasllni~~deL~eG 223 (423)
T KOG0365|consen 145 QLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR-MHVEGEVDVRSAYCALSVASLLNIPMDELFEG 223 (423)
T ss_pred cchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE-eecCCcchHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 679999999999999999963 678999999999999999999998 45569999999999999999999876666688
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCC-CCCccccccC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGGFQGRAN 159 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~-~dGgf~~~~~ 159 (247)
..+||.+||+.+||||+.|+.|+|..+||||+++|++++..+ ..|.+++.+|..++|- .+|||+||.+
T Consensus 224 ~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d-----------~ln~~~Ll~W~~~RQm~~E~GFqGRtN 292 (423)
T KOG0365|consen 224 TLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMD-----------QLNLEKLLEWAVRRQMRFEGGFQGRTN 292 (423)
T ss_pred HHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhh-----------hhCHHHHHHHHHHhhhhhhcccccccc
Confidence 899999999999999999999999999999999999999886 6899999999999996 8999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCC----------CCCCHHHHHHHHH-hcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 160 KPSDTCYAFWIGSVLRMLGGY----------NLIDKEALRGFLL-TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~----------~~~~~~~~~~~L~-~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
|.+|.||+||+.+...+|... -.+|.+++.+||+ .||..+|||+++|+|++|.+||+|++.+|++..++
T Consensus 293 KLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y 372 (423)
T KOG0365|consen 293 KLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHY 372 (423)
T ss_pred chhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhh
Confidence 999999999999999888541 1568999999975 69999999999999999999999999999987765
Q ss_pred CC
Q 025813 229 GL 230 (247)
Q Consensus 229 ~~ 230 (247)
..
T Consensus 373 ~~ 374 (423)
T KOG0365|consen 373 SC 374 (423)
T ss_pred cc
Confidence 43
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=281.14 Aligned_cols=219 Identities=25% Similarity=0.399 Sum_probs=207.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 1 MHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
|+++=+|+..||.+.+|.++|+ .+.+++++++.|+++||+++|||.+.+ +..+++-.|.+|+.+|.++...+..++++
T Consensus 41 l~EhlRmsgiYWg~tal~ll~~-le~~~~eeiv~~v~~C~~~~GGfa~~~-Ghd~hll~TlsAvQiL~~ydsi~~~d~d~ 118 (329)
T KOG0366|consen 41 LTEHLRMSGIYWGLTALDLLGQ-LERMSREEIVSFVLSCQHEDGGFAGCP-GHDPHLLYTLSAVQILALYDSINVLDRDK 118 (329)
T ss_pred HHhHhhhcchhhhhhHHHHhcc-cchhhHHHHHHHHHheecCCCCcCCCC-CCChHHHHHHHHHHHHHHHcccccccHHH
Confidence 4556688999999999999995 677889999999999999999999866 58899999999999999999888899999
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK 160 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~ 160 (247)
.+.||...|++||.|.+....|-|.+.+||||++|+++|+.+ .++++++++|+++|.+.||||+-+|+.
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld-----------~~nve~aVd~~~~CyN~DGGFG~~pGa 187 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD-----------TINVEKAVDFVLSCYNFDGGFGCRPGA 187 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHH-----------HhhHHHHHHHHHhhcccCCCcCCCCCc
Confidence 999999999999999999999999999999999999999987 688999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCC
Q 025813 161 PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNP 232 (247)
Q Consensus 161 ~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~ 232 (247)
|++...+||.+++|+++++++.+|.|.+.+||...|-+.||.++||.|.||+||++|.+++|+++|+.+..+
T Consensus 188 ESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId 259 (329)
T KOG0366|consen 188 ESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWID 259 (329)
T ss_pred ccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986544
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=263.54 Aligned_cols=217 Identities=20% Similarity=0.237 Sum_probs=198.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDR 78 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~ 78 (247)
.+...++..||...++.+++......++++.+.++.+++.++|+|...+ +..+++..||+|+.+|.+++.. ..+++
T Consensus 50 ~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~-g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr 128 (342)
T COG5029 50 LEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGP-GQDSHLASTVFAIQSLAMLDSLDVLSRIDR 128 (342)
T ss_pred hhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCC-ccchhHHHHHHHHHHHHHhccccccchhhH
Confidence 3567889999999999999974445688999999999999999998755 5889999999999999999743 56677
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
+++.+||.++|+|||+|-..-..|.|.+..|+|+.+|.++|..+ ..+.+..++||++||+.||||+..|
T Consensus 129 ~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~-----------~~~~e~~vdyl~kCqnyeGGFg~~p 197 (342)
T COG5029 129 DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLD-----------KELFEGAVDYLKKCQNYEGGFGLCP 197 (342)
T ss_pred HHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcc-----------hhhhHHHHHHHHHhhccCCcccCCC
Confidence 88999999999999999999889999999999999999999765 4578899999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCC-HHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 159 NKPSDTCYAFWIGSVLRMLGGYNLID-KEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 159 ~~~~D~~~~y~a~~~L~lL~~~~~~~-~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
+.|+|..||||++++|++|++++.++ +|++++||.++|.+.|||++||+|.+|.||+||++++|+|+++...
T Consensus 198 ~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~ 270 (342)
T COG5029 198 YAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDF 270 (342)
T ss_pred chhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHhcchhhh
Confidence 99999999999999999999988888 7999999999999999999999999999999999999999996544
No 19
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=248.74 Aligned_cols=216 Identities=22% Similarity=0.291 Sum_probs=196.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcC---CCcccHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDRE 79 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~---~~~~~~~ 79 (247)
|.+..+..||-+.+|++|+..++..-.+++++||..||.|.|||+..| |..+++..||.|+.+|.+++. ++.++++
T Consensus 96 DASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGP-GQl~HLA~TYAAVnaL~~~~~e~A~~~InR~ 174 (423)
T KOG0365|consen 96 DASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGP-GQLPHLAPTYAAVNALCLCGSEDAYSSINRE 174 (423)
T ss_pred ccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCC-ccchhhhHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 567889999999999999976655456899999999999999999766 478999999999999999984 3578999
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccC
Q 025813 80 RAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN 159 (247)
Q Consensus 80 ~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~ 159 (247)
++.+||.++.++||||-...++|.|+++.|||+++-.+++-..+++ .+...+||.+||+.+|||+|.|+
T Consensus 175 ~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL-----------~eG~~~wi~~CQtyEGG~GG~P~ 243 (423)
T KOG0365|consen 175 KLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDEL-----------FEGTLDWIASCQTYEGGFGGEPG 243 (423)
T ss_pred HHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHH-----------HHHHHHHHHhcccccCCcCCCcc
Confidence 9999999999999999999999999999999999999998876443 57799999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-CCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 160 KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
.|++..||||++++|.+|+.....|.+++.+|..+.|. .+|||.+|.+|..|.||+||.-+...++.....
T Consensus 244 ~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~ 315 (423)
T KOG0365|consen 244 VEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYS 315 (423)
T ss_pred ccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhc
Confidence 99999999999999999998888999999999999997 699999999999999999999998888876544
No 20
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=234.17 Aligned_cols=219 Identities=26% Similarity=0.327 Sum_probs=191.8
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCC--------CCccccCC---------CCCcchHHHHHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHD--------GSFMPIHF---------GAEKDLRFVYCAA 64 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~d--------Ggf~~~~~---------~~~~d~~~ty~al 64 (247)
||.+.+...++||..|.+|+. ++.++++.+++||.+.|-.. -||..+.. ..++++..||+++
T Consensus 34 hd~~R~tiafFaisGLd~L~~-ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl 112 (347)
T KOG0367|consen 34 HDTNRLTIAFFAISGLDLLDA-LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSL 112 (347)
T ss_pred cccchHHHHHHHHcchhhhhh-hhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHH
Confidence 577889999999999999995 56678999999999987432 24544221 2467899999999
Q ss_pred HHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCC-CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHH
Q 025813 65 AICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTP-GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLS 142 (247)
Q Consensus 65 ~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p-~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 142 (247)
+.|..||.. +.+|++.+++++..||.+||.|...+ +.|+|.+.-|||+++..+++... .+|.++++.
T Consensus 113 ~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s-----------~iD~ek~~~ 181 (347)
T KOG0367|consen 113 ACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWS-----------GIDKEKLIG 181 (347)
T ss_pred HHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccc-----------ccCHHHHHH
Confidence 999999964 67899999999999999999998764 68899999999999999998543 789999999
Q ss_pred HHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC--C----CCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHH
Q 025813 143 WCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY--N----LIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSF 216 (247)
Q Consensus 143 ~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~--~----~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~ 216 (247)
||.++|+.||||+-.|++|++..+||||+++|+++++. + ..+++++++|++..|..+|||.+||+|++|.||+|
T Consensus 182 yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaF 261 (347)
T KOG0367|consen 182 YIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAF 261 (347)
T ss_pred HHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHH
Confidence 99999999999999999999999999999999999975 2 23579999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 025813 217 YGYTAFSLLEEPGLNP 232 (247)
Q Consensus 217 ~al~~L~ll~~~~~~~ 232 (247)
|..++|.+++...+..
T Consensus 262 WigasLklL~~~~~~d 277 (347)
T KOG0367|consen 262 WIGASLKLLDADWLID 277 (347)
T ss_pred HHHHHHHHccchHhhh
Confidence 9999999999876643
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=5.2e-26 Score=196.19 Aligned_cols=208 Identities=39% Similarity=0.564 Sum_probs=179.4
Q ss_pred CCcHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcccCCCCccccCCC------CCcchHHHHHHHHHHHHhcCCC-
Q 025813 4 GSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFG------AEKDLRFVYCAAAICFLLEDWS- 74 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~------~~~d~~~ty~al~~l~ll~~~~- 74 (247)
.+++..|++++.+|..++.. ......+++++||.++|++||+|...... ..+++..|++++.+|.+++...
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~ 158 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP 158 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC
Confidence 67899999999999999963 23334689999999999999999865432 2678999999999999998642
Q ss_pred cccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcc
Q 025813 75 GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGF 154 (247)
Q Consensus 75 ~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf 154 (247)
...++++++||.++|++|||| .+..++|...|++++.+|..++... ...++++++||.++|.++|||
T Consensus 159 ~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~-----------~~~~~~~~~~L~~~q~~~g~~ 225 (300)
T cd00688 159 DPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLD-----------SPDAKKALRWLLSRQRPDGGW 225 (300)
T ss_pred cHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHHHHhcCCCCCc
Confidence 457899999999999999999 6778899999999999999998752 245789999999999999999
Q ss_pred cccc---CCCCchhhHHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHh
Q 025813 155 QGRA---NKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 155 ~~~~---~~~~D~~~~y~a~~~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~l 224 (247)
...+ ....|.++++|++.+|..++.. .....+++++||.++|+.+|||...|.+.+|.++|++++.+|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 226 GEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred CccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 9765 6789999999999999888753 23457899999999999999999999999999999999999975
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.93 E-value=3.5e-24 Score=184.77 Aligned_cols=214 Identities=24% Similarity=0.231 Sum_probs=179.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCC-----CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---C
Q 025813 3 NGSNLASTYCALAILKAVGYN-----FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---S 74 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~-----~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~ 74 (247)
....+..|++++.++..++.. ......+++++||.++|++||+|...+....+++..|++++.+|..++.. .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~ 102 (300)
T cd00688 23 CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVD 102 (300)
T ss_pred CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccC
Confidence 345678999999999988752 12235689999999999999999865432278999999999999999853 3
Q ss_pred cccHHHHHHHHHhcCCCCCCccCCCCC-------CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc
Q 025813 75 GMDRERAKAYILNCQSYDGGFGLTPGS-------ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147 (247)
Q Consensus 75 ~~~~~~~~~~l~~~Q~~dGGFg~~p~~-------~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (247)
....+++++||+++|++||||...+.. .+++..|++++.+|..++...+ ..+++++++||.++
T Consensus 103 ~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~----------~~~~~~~~~~l~~~ 172 (300)
T cd00688 103 RIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP----------DPLIEKALDYLLSC 172 (300)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC----------cHHHHHHHHHHHHH
Confidence 456789999999999999999887554 6899999999999999987531 23688999999999
Q ss_pred CCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCC---CCCccHHHHHHHHHHHHh
Q 025813 148 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP---GDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 148 Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p---~~~~d~~~T~~al~~L~l 224 (247)
|++|||| .+..+.|+..++|++.+|.+++.......+++++||+++|..+|||...+ ...+|.++|++++.+|..
T Consensus 173 q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~ 250 (300)
T cd00688 173 QNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLA 250 (300)
T ss_pred hcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHH
Confidence 9999999 66778899999999999999986433457899999999999999999875 778999999999999998
Q ss_pred cCCC
Q 025813 225 LEEP 228 (247)
Q Consensus 225 l~~~ 228 (247)
++..
T Consensus 251 ~~~~ 254 (300)
T cd00688 251 LGKL 254 (300)
T ss_pred Hhhh
Confidence 8764
No 23
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.89 E-value=5.1e-22 Score=190.09 Aligned_cols=221 Identities=19% Similarity=0.110 Sum_probs=160.1
Q ss_pred cHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHhccc--------------CCCCccccCC-CCCcchHHHHHHHHHHH
Q 025813 6 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQ--------------HDGSFMPIHF-GAEKDLRFVYCAAAICF 68 (247)
Q Consensus 6 ~l~~Ty~a~~~L~~lg~~~~~--~~~~~~i~~l~~~q~--------------~dGgf~~~~~-~~~~d~~~ty~al~~l~ 68 (247)
.++.|-.++++|.--|...+. ...+|+.+||.++|. ++|||..... .+.+|...|--++.+|.
T Consensus 305 ~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~ 384 (634)
T TIGR03463 305 SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASL 384 (634)
T ss_pred CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHH
Confidence 448999999999876631111 124789999999995 4688875422 23456666766666665
Q ss_pred HhcC---C-----CcccHHHHHHHHHhcCCCCCCccCCCC---------------------CCCChhhHHHHHHHHHHhC
Q 025813 69 LLED---W-----SGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLRLMG 119 (247)
Q Consensus 69 ll~~---~-----~~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------------~~s~~~~T~~al~~L~~lg 119 (247)
.+.. . +....+++++||+++||+||||+..+. ..+++..|..+|.+|..++
T Consensus 385 ~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~ 464 (634)
T TIGR03463 385 VLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWR 464 (634)
T ss_pred HHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHh
Confidence 5431 1 123457899999999999999995422 3468899999999999887
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCC
Q 025813 120 FIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQ 198 (247)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~-~~~~~~~~~~~L~~~Q~~ 198 (247)
...++...++. ...++++++||++.|++||||.++++ ..+...|++++.+|..+|.. ....++++++||+++|++
T Consensus 465 ~~~~~~~~~~i---~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~ 540 (634)
T TIGR03463 465 KHHPHVPDGRI---TRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRA 540 (634)
T ss_pred hcCcchhhhHH---HHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCC
Confidence 64321110000 12377899999999999999998876 34566788899999888753 223478999999999999
Q ss_pred CCCcCCC----------CCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 199 YGGFGKC----------PGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 199 ~GGf~~~----------p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
||||+.. ++..++.+.|+||+.+|...++.+.
T Consensus 541 DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~ 582 (634)
T TIGR03463 541 DGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGH 582 (634)
T ss_pred CCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCC
Confidence 9999763 4456889999999999999886543
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.88 E-value=2.3e-21 Score=185.49 Aligned_cols=215 Identities=15% Similarity=0.037 Sum_probs=158.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhccc-------------CCCCccccCC-CCCcchHHHHHHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQ-------------HDGSFMPIHF-GAEKDLRFVYCAAAICFL 69 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~-------------~dGgf~~~~~-~~~~d~~~ty~al~~l~l 69 (247)
.+.++.|-.++++|...|...+.+...|+.+||++.|. +.|||..... .+.+|+..|-.++.+|..
T Consensus 313 ~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~ 392 (635)
T TIGR01507 313 VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNG 392 (635)
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHH
Confidence 45789999999999988853333456899999999973 2577764321 235799999999888877
Q ss_pred hcCCC----cccHHHHHHHHHhcCCCCCCccCCCC-------------------CCCChhhHHHHHHHHHHhCCcccccc
Q 025813 70 LEDWS----GMDRERAKAYILNCQSYDGGFGLTPG-------------------SESHGGGTYCAVASLRLMGFIEDNVL 126 (247)
Q Consensus 70 l~~~~----~~~~~~~~~~l~~~Q~~dGGFg~~p~-------------------~~s~~~~T~~al~~L~~lg~~~~~~~ 126 (247)
++... ....+++++||+++||+||||+.... +.+++..|..++.+|...+....
T Consensus 393 ~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~--- 469 (635)
T TIGR01507 393 LRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDA--- 469 (635)
T ss_pred cCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCch---
Confidence 75321 23678999999999999999976421 23567779889999988875421
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcCCC
Q 025813 127 SKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGGFGKC 205 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~ 205 (247)
...++++++||++.|++||||.++++. .++..|..++.+|...+.. ....++++++||+++|+.||||+..
T Consensus 470 -------~~~i~rav~~L~~~Q~~dG~W~g~wg~-~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~ 541 (635)
T TIGR01507 470 -------WPVIERAVEYLKREQEPDGSWFGRWGV-NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGED 541 (635)
T ss_pred -------hHHHHHHHHHHHHccCCCCCCccCCCC-ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCC
Confidence 235789999999999999999887662 2333333344555544432 1123689999999999999999854
Q ss_pred ----------CCCCccHHHHHHHHHHHHhcCCCC
Q 025813 206 ----------PGDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 206 ----------p~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
+...+|+..|.|++.+|...+..+
T Consensus 542 ~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~ 575 (635)
T TIGR01507 542 CRSYEDPAYAGKGASTASQTAWALIALIAAGRAE 575 (635)
T ss_pred CcccccccccCCCCCcHHHHHHHHHHHHHhCCCC
Confidence 223689999999999999988664
No 25
>PLN03012 Camelliol C synthase
Probab=99.88 E-value=1.6e-21 Score=187.20 Aligned_cols=220 Identities=16% Similarity=0.114 Sum_probs=156.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHhcccCC---------------CCccccC-CCCCcchHHHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYNFA-NIDSKSILTSMRNLQQHD---------------GSFMPIH-FGAEKDLRFVYCAAAI 66 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~-~~~~~~~i~~l~~~q~~d---------------Ggf~~~~-~~~~~d~~~ty~al~~ 66 (247)
.+.|+.|-+++++|.--|...+ .....|+.+||++.|..+ |||.... ..+-++..-|--++.+
T Consensus 415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka 494 (759)
T PLN03012 415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC 494 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence 5789999999999987774221 123579999999998731 5554321 1134555666555544
Q ss_pred ---HHHhcC------CCcccHHHHHHHHHhcCCCCCCccCCCC---------------------CCCChhhHHHHHHHHH
Q 025813 67 ---CFLLED------WSGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLR 116 (247)
Q Consensus 67 ---l~ll~~------~~~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------------~~s~~~~T~~al~~L~ 116 (247)
+.++.. .......++++||+++||+||||+.... +.+.+..|..+|.+|.
T Consensus 495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~ 574 (759)
T PLN03012 495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI 574 (759)
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence 333321 0112357899999999999999977532 3567777999999999
Q ss_pred HhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHH---HHHHHHHhcCCCC--CCHHHHHHH
Q 025813 117 LMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFW---IGSVLRMLGGYNL--IDKEALRGF 191 (247)
Q Consensus 117 ~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~---a~~~L~lL~~~~~--~~~~~~~~~ 191 (247)
++++..++.+.++. ...+.++++||++.|++||||.++++ +||+|+ |+.+|...|.... ..++++++|
T Consensus 575 ~f~~~~~~~r~~~i---~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~f 647 (759)
T PLN03012 575 LFKQLYPDHRTEEI---NAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHF 647 (759)
T ss_pred HHhhhCcccchhhh---HHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHH
Confidence 98875433221111 23478899999999999999999999 466665 5555655564311 347899999
Q ss_pred HHhcCCCCCCcCCCC------------CCCccHHHHHHHHHHHHhcCCCCC
Q 025813 192 LLTCQSQYGGFGKCP------------GDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 192 L~~~Q~~~GGf~~~p------------~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
|++.|+.||||++.- +..|.++.|+||+.+|...|+.+.
T Consensus 648 Lls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~ 698 (759)
T PLN03012 648 LLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAER 698 (759)
T ss_pred HHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCC
Confidence 999999999999863 235889999999999999988653
No 26
>PLN02993 lupeol synthase
Probab=99.88 E-value=2e-21 Score=186.83 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=160.2
Q ss_pred CCcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhcccC---------------CCCccccC-CCCCcchHHHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQH---------------DGSFMPIH-FGAEKDLRFVYCAAAI 66 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q~~---------------dGgf~~~~-~~~~~d~~~ty~al~~ 66 (247)
.+-|+.|-+++++|.--|.. .......|+.+||++.|.. .|||.... ..+-+|..-|--++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 57799999999999887742 1223458999999998863 26665321 1244666667666654
Q ss_pred HHHhcCCC---------cccHHHHHHHHHhcCCCCCCccCCCC---------------------CCCChhhHHHHHHHHH
Q 025813 67 CFLLEDWS---------GMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLR 116 (247)
Q Consensus 67 l~ll~~~~---------~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------------~~s~~~~T~~al~~L~ 116 (247)
+.+|.... .....++++||+++||+||||+.... +.+.+..|..+|.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 43443211 12356899999999999999988632 2478888999999999
Q ss_pred HhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCC--CCHHHHHHHHHh
Q 025813 117 LMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL--IDKEALRGFLLT 194 (247)
Q Consensus 117 ~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~--~~~~~~~~~L~~ 194 (247)
++++..++.+.++. ...++++++||++.|++||||.++++. +.+..|++++.+|...|.... ..++++++||++
T Consensus 575 ~~~~~~p~~r~~ei---~~~i~rAv~yL~~~Q~~DGSW~G~Wgv-~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls 650 (763)
T PLN02993 575 LFKQLYPDHRTKEI---IKSIEKAVQFIESKQTPDGSWYGNWGI-CFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLT 650 (763)
T ss_pred HhcccCcchhhhhH---HHHHHHHHHHHHHhcCCCCCccccccc-ccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 99764333221111 124788999999999999999998772 334456667777777776422 347899999999
Q ss_pred cCCCCCCcCCCC------------CCCccHHHHHHHHHHHHhcCCCC
Q 025813 195 CQSQYGGFGKCP------------GDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 195 ~Q~~~GGf~~~p------------~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
+|+.||||++.- +..|.++.|+||+.+|...|+.+
T Consensus 651 ~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~ 697 (763)
T PLN02993 651 IQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAE 697 (763)
T ss_pred hcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCC
Confidence 999999998742 24588999999999999998753
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.86 E-value=1.9e-20 Score=180.00 Aligned_cols=221 Identities=20% Similarity=0.176 Sum_probs=158.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhccc--------------CCCCccccC-CCCCcchHHHHHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQ--------------HDGSFMPIH-FGAEKDLRFVYCAAAI 66 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q~--------------~dGgf~~~~-~~~~~d~~~ty~al~~ 66 (247)
+.+.++.|-.++++|.-.|.. ......+++++||.+.|. +.|||.... ..+.+|+..|-.++.+
T Consensus 304 ~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~A 383 (634)
T cd02892 304 NGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKA 383 (634)
T ss_pred CCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence 356799999999999877742 111234789999999995 356665321 1134567778777777
Q ss_pred HHHhcCCC-------cccHHHHHHHHHhcCCCCCCccCC-CC--------------------CCCChhhHHHHHHHHHHh
Q 025813 67 CFLLEDWS-------GMDRERAKAYILNCQSYDGGFGLT-PG--------------------SESHGGGTYCAVASLRLM 118 (247)
Q Consensus 67 l~ll~~~~-------~~~~~~~~~~l~~~Q~~dGGFg~~-p~--------------------~~s~~~~T~~al~~L~~l 118 (247)
+..++... ...++++++||+++|++||||+.. +. +.+++..|+.++.+|..+
T Consensus 384 L~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~ 463 (634)
T cd02892 384 LLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLF 463 (634)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHh
Confidence 77776421 234679999999999999999852 11 146778899999999998
Q ss_pred CCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC-C-CCCHHHHHHHHHhcC
Q 025813 119 GFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-N-LIDKEALRGFLLTCQ 196 (247)
Q Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~-~-~~~~~~~~~~L~~~Q 196 (247)
+...+.... +. ...++++++||++.|++||||.++++ ...+..+++++.+|..+|.. . ...++++++||+++|
T Consensus 464 ~~~~~~~r~-~i---~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q 538 (634)
T cd02892 464 GKLYPGHRR-EI---DPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQ 538 (634)
T ss_pred cccCcchHH-HH---HHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcC
Confidence 875421100 00 12478899999999999999988775 23344455677777777753 1 234689999999999
Q ss_pred CCCCCcCCCC----------CCCccHHHHHHHHHHHHhcCCC
Q 025813 197 SQYGGFGKCP----------GDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 197 ~~~GGf~~~p----------~~~~d~~~T~~al~~L~ll~~~ 228 (247)
+.||||+..+ +..+++..|+||+.+|...+..
T Consensus 539 ~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 539 NPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred CCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 9999998642 3457899999999999988765
No 28
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.86 E-value=1.3e-21 Score=147.66 Aligned_cols=109 Identities=28% Similarity=0.441 Sum_probs=91.9
Q ss_pred HHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHH--HHHHHhcCCCCCccccccC
Q 025813 82 KAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL--LSWCLQRQAADGGFQGRAN 159 (247)
Q Consensus 82 ~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~--~~~l~~~Q~~dGgf~~~~~ 159 (247)
|+||+++|++||||+.. +.++++..|+.|+.+|..++..+ +++++ ++||.++|++||||...+.
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~-------------~~~~~~~~~~L~~~q~~dGg~~~~~~ 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP-------------DRDRAAAVEWLLSQQNPDGGWGSNPD 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH-------------CHHHHHHHHHHHHHB-TTSGBBSSTT
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc-------------cHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 68999999999999998 78899999999999999999864 47778 9999999999999999885
Q ss_pred -CCCchhhHHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcCC
Q 025813 160 -KPSDTCYAFWIGSVLRMLGGYNL-IDKEALRGFLLTCQSQYGGFGK 204 (247)
Q Consensus 160 -~~~D~~~~y~a~~~L~lL~~~~~-~~~~~~~~~L~~~Q~~~GGf~~ 204 (247)
.++|+..+++++++|.+++.... ..++++++||++||+++|||++
T Consensus 67 ~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 67 GGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp TT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred CCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 56899999999999999987542 4578999999999999999974
No 29
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.85 E-value=7.3e-20 Score=163.84 Aligned_cols=219 Identities=19% Similarity=0.137 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhcc--------------cCCCCccccCCC-CCcchHHHHHHHHHHH
Q 025813 5 SNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQ--------------QHDGSFMPIHFG-AEKDLRFVYCAAAICF 68 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q--------------~~dGgf~~~~~~-~~~d~~~ty~al~~l~ 68 (247)
+++..|..++.+|...|.. ......+|+++||.+.| .++|+|...... +.++...|-.++.++.
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~ 102 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALL 102 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHH
Confidence 7889999999999988852 12224689999999999 689998743221 2245556666666666
Q ss_pred HhcCCC-------cccHHHHHHHHHhcCCCCCCccCCCC-------------------CCCChhhHHHHHHHHHHhCCcc
Q 025813 69 LLEDWS-------GMDRERAKAYILNCQSYDGGFGLTPG-------------------SESHGGGTYCAVASLRLMGFIE 122 (247)
Q Consensus 69 ll~~~~-------~~~~~~~~~~l~~~Q~~dGGFg~~p~-------------------~~s~~~~T~~al~~L~~lg~~~ 122 (247)
.++... ...++++++||+++|++||||..... ..+++..|..++.+|..++...
T Consensus 103 ~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~ 182 (348)
T cd02889 103 RLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLY 182 (348)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcC
Confidence 665431 23567999999999999999985321 2467888999999999988753
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCC
Q 025813 123 DNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGG 201 (247)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GG 201 (247)
+....+ . ...++++++||.+.|++||||.+.++. .+...+.+++.+|..+|.. .....+++++||+++|+++||
T Consensus 183 ~~~~~~-~---~~~i~~a~~~L~~~q~~dG~w~~~~~~-~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~ 257 (348)
T cd02889 183 PEHRRE-I---DPAIRRAVKYLEREQEPDGSWYGRWGV-CFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGG 257 (348)
T ss_pred CchHHH-H---HHHHHHHHHHHHHhCCCCCCccccCCC-cchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCC
Confidence 210000 0 024678999999999999999765442 3344455666677766643 123467899999999999999
Q ss_pred cCCC----------CCCCccHHHHHHHHHHHHhcCCC
Q 025813 202 FGKC----------PGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 202 f~~~----------p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
|+.. +...+++..|.|++.+|...+..
T Consensus 258 w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~ 294 (348)
T cd02889 258 WGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEP 294 (348)
T ss_pred cCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCC
Confidence 9863 34568899999999999988765
No 30
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.85 E-value=1.6e-20 Score=179.68 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=143.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHhcccCCCCccccCCC------------------CCcchHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHDGSFMPIHFG------------------AEKDLRFVYC 62 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~------------------~~~d~~~ty~ 62 (247)
.|++.+|-.++.+|..++...+ ....+++++||.++|++||||..+... +.+++..|-.
T Consensus 377 ~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~ 456 (635)
T TIGR01507 377 YPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTAR 456 (635)
T ss_pred CCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHH
Confidence 5899999999999998863111 123478999999999999999653210 1234444555
Q ss_pred HHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHH
Q 025813 63 AAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL 141 (247)
Q Consensus 63 al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 141 (247)
++.+|...+.. ....++++++||++.|++||||-+..+ ..+...|..++.+|...|.... ...+++++
T Consensus 457 ~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~----------~~~i~rAv 525 (635)
T TIGR01507 457 VLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTR----------EPYIQKAL 525 (635)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcc----------cHHHHHHH
Confidence 66666655532 234578999999999999999744333 3566778888999988776421 34588999
Q ss_pred HHHHhcCCCCCccccc----------cCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCC
Q 025813 142 SWCLQRQAADGGFQGR----------ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKC 205 (247)
Q Consensus 142 ~~l~~~Q~~dGgf~~~----------~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~ 205 (247)
+||+++|++||||... ..+++|+..|.|++.+|...+..+...++++++||.++|+.+|||...
T Consensus 526 ~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 526 AWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred HHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 9999999999999742 124688999999999998888654445789999999999999999775
No 31
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.84 E-value=1.3e-19 Score=173.29 Aligned_cols=217 Identities=21% Similarity=0.127 Sum_probs=152.6
Q ss_pred CCcHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHhcccCC---------------CCccccCC-CCCcchHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGY---NFANIDSKSILTSMRNLQQHD---------------GSFMPIHF-GAEKDLRFVYCAA 64 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~---~~~~~~~~~~i~~l~~~q~~d---------------Ggf~~~~~-~~~~d~~~ty~al 64 (247)
.+.|+.|-+++++|.--|. +.......++++||.+.|..+ |||..... .+.+|+..|-.++
T Consensus 293 ~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~ 372 (621)
T TIGR01787 293 GSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVA 372 (621)
T ss_pred CCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHH
Confidence 5678999999999977672 212234589999999999866 55543211 1334666665555
Q ss_pred HHHHHhcC-C---CcccHHHHHHHHHhcCCCCCCccCCCC---------------------CCCChhhHHHHHHHHHHhC
Q 025813 65 AICFLLED-W---SGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLRLMG 119 (247)
Q Consensus 65 ~~l~ll~~-~---~~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------------~~s~~~~T~~al~~L~~lg 119 (247)
..+.++.. . .....+++++||+++|++||||+.... ..+.+..|..+|.+|..++
T Consensus 373 la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~ 452 (621)
T TIGR01787 373 LKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG 452 (621)
T ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc
Confidence 44444432 1 123457899999999999999985321 2244568999999998887
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCC--CCHHHHHHHHHhcCC
Q 025813 120 FIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL--IDKEALRGFLLTCQS 197 (247)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~--~~~~~~~~~L~~~Q~ 197 (247)
...++. ...++++++||++.|++||+|.++++. ..+..|.+++.+|..+|.... ..++++++||+++|+
T Consensus 453 ~r~~~~--------~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~ 523 (621)
T TIGR01787 453 HRADEI--------RNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQM 523 (621)
T ss_pred CccHhH--------HHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcC
Confidence 422111 124789999999999999999988763 223335556666777765321 236899999999999
Q ss_pred CCCCcCCCC----------CCCccHHHHHHHHHHHHhcCCCC
Q 025813 198 QYGGFGKCP----------GDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 198 ~~GGf~~~p----------~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
+||||+..+ ...|++..|.||+.+|...+..+
T Consensus 524 ~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~ 565 (621)
T TIGR01787 524 PDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD 565 (621)
T ss_pred CCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccc
Confidence 999998643 23689999999999999887654
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.84 E-value=1.7e-20 Score=141.40 Aligned_cols=110 Identities=30% Similarity=0.409 Sum_probs=91.0
Q ss_pred HHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHH--HHHHHhcCCCCCCccCCC-CCCCChhhHH
Q 025813 33 LTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERA--KAYILNCQSYDGGFGLTP-GSESHGGGTY 109 (247)
Q Consensus 33 i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~--~~~l~~~Q~~dGGFg~~p-~~~s~~~~T~ 109 (247)
|+||.++|++||+|... +..+++..|++++.+|..++.. .+++++ ++||+++|++||||+..| +.++++..|+
T Consensus 1 v~~L~~~Q~~dGgw~~~--~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~ 76 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF--GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTY 76 (113)
T ss_dssp HHHHHHHB-TTSSBBSS--TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHH
T ss_pred CHhhHHHcCCCCCCcCC--CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHH
Confidence 68999999999999864 5789999999999999999853 358888 999999999999999998 5778999999
Q ss_pred HHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccc
Q 025813 110 CAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 156 (247)
Q Consensus 110 ~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~ 156 (247)
+++.+|.+++..++ ...++++++||+++|++||||++
T Consensus 77 ~~l~~l~~~~~~~~----------~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 77 VALAALELLGRPDD----------EEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHHT-GGC----------HTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHHcCCCcc----------cHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999988752 14577899999999999999973
No 33
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.84 E-value=4.1e-20 Score=177.01 Aligned_cols=193 Identities=19% Similarity=0.134 Sum_probs=142.3
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CC--CCC---CHHHHHHHHHhcccCCCCccccCCC--------------------CCc
Q 025813 3 NGSNLASTYCALAILKAVGY--NF--ANI---DSKSILTSMRNLQQHDGSFMPIHFG--------------------AEK 55 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~--~~--~~~---~~~~~i~~l~~~q~~dGgf~~~~~~--------------------~~~ 55 (247)
..|.+-+|-.++.+|..+.. .. +.. ...++++||.++||+||||..+... +.+
T Consensus 369 ~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~ 448 (634)
T TIGR03463 369 GWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVS 448 (634)
T ss_pred CCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCC
Confidence 34667788888888877542 11 111 2367899999999999999854321 123
Q ss_pred chHHHHHHHHHHHHhcCCCc--------ccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccc
Q 025813 56 DLRFVYCAAAICFLLEDWSG--------MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLS 127 (247)
Q Consensus 56 d~~~ty~al~~l~ll~~~~~--------~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~ 127 (247)
.+..|-.++.+|..++.... ..++++++||++.|++||||.+.-+ ......|++|+.+|..+|....
T Consensus 449 ~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~---- 523 (634)
T TIGR03463 449 YVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPD---- 523 (634)
T ss_pred cCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcC----
Confidence 45555566666666553221 1367899999999999999876543 3455679999999999887531
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCcccccc----------CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 025813 128 KNTSSSIIDLPLLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS 197 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~----------~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~ 197 (247)
...++++++||+++|++||||.... +.++++..|.||+.+|...|......++++++||++.|+
T Consensus 524 ------~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~ 597 (634)
T TIGR03463 524 ------DMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQ 597 (634)
T ss_pred ------cHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCC
Confidence 3458899999999999999997542 335778889999999988875444457899999999999
Q ss_pred CCCCcCCCC
Q 025813 198 QYGGFGKCP 206 (247)
Q Consensus 198 ~~GGf~~~p 206 (247)
+||||...+
T Consensus 598 ~dG~W~~~~ 606 (634)
T TIGR03463 598 EDGRWPREP 606 (634)
T ss_pred CCCCCCCCc
Confidence 999998865
No 34
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.82 E-value=9.3e-20 Score=175.31 Aligned_cols=192 Identities=18% Similarity=0.102 Sum_probs=144.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC---CCC---HHHHHHHHHhcccCCCCccccCCC--------------------CCcch
Q 025813 4 GSNLASTYCALAILKAVGYNFA---NID---SKSILTSMRNLQQHDGSFMPIHFG--------------------AEKDL 57 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~---~~~---~~~~i~~l~~~q~~dGgf~~~~~~--------------------~~~d~ 57 (247)
.|++.+|-.++.+|..++.... ..+ .+++++||.++|++||||..+... +.+.+
T Consensus 371 ~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~ 450 (634)
T cd02892 371 YPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYV 450 (634)
T ss_pred CCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCc
Confidence 4778899999999999885321 122 368899999999999999753211 12455
Q ss_pred HHHHHHHHHHHHhcCCCc-------ccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCc-cccccccC
Q 025813 58 RFVYCAAAICFLLEDWSG-------MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI-EDNVLSKN 129 (247)
Q Consensus 58 ~~ty~al~~l~ll~~~~~-------~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~-~~~~~~~~ 129 (247)
..|..++.+|..++.... ..++++++||+++|++||||.+.. ...+...|+.++.+|..+|.. ..
T Consensus 451 ~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~G~~~~~------ 523 (634)
T cd02892 451 ECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAAGEDYEN------ 523 (634)
T ss_pred chHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHhCCcccC------
Confidence 668888999988875422 247899999999999999996643 345677888999999998865 21
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcccccc----------CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 025813 130 TSSSIIDLPLLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQY 199 (247)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~----------~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~ 199 (247)
...++++++||+++|++||||...+ ...+++..|.|++.+|...+..+...++++++||.++|+.+
T Consensus 524 ----~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~ 599 (634)
T cd02892 524 ----SPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPD 599 (634)
T ss_pred ----cHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCC
Confidence 2467899999999999999997432 23466777877777776666543345788999999999999
Q ss_pred CCcCCCC
Q 025813 200 GGFGKCP 206 (247)
Q Consensus 200 GGf~~~p 206 (247)
|||....
T Consensus 600 G~w~~~~ 606 (634)
T cd02892 600 GDWPQEE 606 (634)
T ss_pred CCCCCcc
Confidence 9998753
No 35
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.82 E-value=1.7e-19 Score=161.49 Aligned_cols=191 Identities=18% Similarity=0.133 Sum_probs=142.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCC---CC---CHHHHHHHHHhcccCCCCccccCCC------------------CCcchHHH
Q 025813 5 SNLASTYCALAILKAVGYNFA---NI---DSKSILTSMRNLQQHDGSFMPIHFG------------------AEKDLRFV 60 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~~~---~~---~~~~~i~~l~~~q~~dGgf~~~~~~------------------~~~d~~~t 60 (247)
+++..|-.++.+|..++.... .. ..++.++||.++|++||+|...... ..+++..|
T Consensus 89 ~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T 168 (348)
T cd02889 89 PDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECT 168 (348)
T ss_pred CCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchH
Confidence 456688899999988874210 11 2468899999999999999753210 12456678
Q ss_pred HHHHHHHHHhcCCCc-------ccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCC
Q 025813 61 YCAAAICFLLEDWSG-------MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSS 133 (247)
Q Consensus 61 y~al~~l~ll~~~~~-------~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~ 133 (247)
..++.+|..++.... ...+++++||+++|++||||.... ...+...|+.++.+|...|....
T Consensus 169 a~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~---------- 237 (348)
T cd02889 169 GSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDEN---------- 237 (348)
T ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCcC----------
Confidence 888888888875322 245799999999999999996533 23466778889999998886421
Q ss_pred CCCHHHHHHHHHhcCCCCCccccc----------cCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcC
Q 025813 134 IIDLPLLLSWCLQRQAADGGFQGR----------ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFG 203 (247)
Q Consensus 134 ~~~~~~~~~~l~~~Q~~dGgf~~~----------~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~ 203 (247)
...++++++||+++|++||||... +....|+..|.+++.+|...+......++++++||.++|+++|||.
T Consensus 238 ~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~ 317 (348)
T cd02889 238 SPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWP 317 (348)
T ss_pred cHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcC
Confidence 345789999999999999999753 2345678888888888877665433457889999999999999998
Q ss_pred CCC
Q 025813 204 KCP 206 (247)
Q Consensus 204 ~~p 206 (247)
..+
T Consensus 318 ~~~ 320 (348)
T cd02889 318 QEE 320 (348)
T ss_pred Cce
Confidence 854
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.81 E-value=2.3e-19 Score=171.66 Aligned_cols=192 Identities=17% Similarity=0.111 Sum_probs=140.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHhcccCCCCccccCCCC--------------------CcchHHHH
Q 025813 5 SNLASTYCALAILKAVGYNFANID---SKSILTSMRNLQQHDGSFMPIHFGA--------------------EKDLRFVY 61 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~~~~~~---~~~~i~~l~~~q~~dGgf~~~~~~~--------------------~~d~~~ty 61 (247)
|++.+|-.++.++.++.......+ .+++++||.++|++||||..+.... .+.+..|.
T Consensus 363 PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~ 442 (621)
T TIGR01787 363 PDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTA 442 (621)
T ss_pred CCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHH
Confidence 688888888877766653212222 3589999999999999998543211 11224566
Q ss_pred HHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHH
Q 025813 62 CAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLP 138 (247)
Q Consensus 62 ~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~ 138 (247)
.++.+|...+.. ....++++++||+++|++||+|.+..+ ......|..++.+|..+|....+ ...++
T Consensus 443 ~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~---------~~~i~ 512 (621)
T TIGR01787 443 RVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRN---------CPEVQ 512 (621)
T ss_pred HHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccC---------CHHHH
Confidence 677777666521 123578999999999999999876443 33456688899999988875310 13478
Q ss_pred HHHHHHHhcCCCCCcccccc----------CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCC
Q 025813 139 LLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP 206 (247)
Q Consensus 139 ~~~~~l~~~Q~~dGgf~~~~----------~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p 206 (247)
++++||+++|++||||.... .+.+|+..|.|++.+|...+......++++++||.++|+.+|||...+
T Consensus 513 rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 513 KACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEY 590 (621)
T ss_pred HHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 99999999999999997432 135789999999999987775433357899999999999999997754
No 37
>PLN03012 Camelliol C synthase
Probab=99.78 E-value=5.1e-18 Score=163.14 Aligned_cols=192 Identities=17% Similarity=0.142 Sum_probs=136.4
Q ss_pred CCcHHHHHHHHHHHHHhC---CCC--CCCC---HHHHHHHHHhcccCCCCccccCCC--------------------CCc
Q 025813 4 GSNLASTYCALAILKAVG---YNF--ANID---SKSILTSMRNLQQHDGSFMPIHFG--------------------AEK 55 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg---~~~--~~~~---~~~~i~~l~~~q~~dGgf~~~~~~--------------------~~~ 55 (247)
.|.+=+|--++.++.++. .+. +.++ ..++++||.++||+||||..+... +.+
T Consensus 482 yp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~ 561 (759)
T PLN03012 482 WQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHE 561 (759)
T ss_pred CCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCC
Confidence 355567777776533333 111 1122 357899999999999999654320 112
Q ss_pred chHHHHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccc
Q 025813 56 DLRFVYCAAAICFLLEDWS--------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLS 127 (247)
Q Consensus 56 d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~ 127 (247)
-..-|-.++.+|.+++... ...++++++||++.|++||||.++-+. .....|++||.+|..+|...+.
T Consensus 562 y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~--- 637 (759)
T PLN03012 562 YNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFND--- 637 (759)
T ss_pred cccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCC---
Confidence 2233445567776665321 124678999999999999999987543 3456799999999999885421
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCccccccC------------CCCchhhHHHHHHHHHHhcCCCC--CCHHHHHHHHH
Q 025813 128 KNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN------------KPSDTCYAFWIGSVLRMLGGYNL--IDKEALRGFLL 193 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~------------~~~D~~~~y~a~~~L~lL~~~~~--~~~~~~~~~L~ 193 (247)
...++++++||++.|++||||+.... +.+.+..|.||+.+|-..|..+. ..++++++||+
T Consensus 638 ------~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll 711 (759)
T PLN03012 638 ------CEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLII 711 (759)
T ss_pred ------cHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 24588999999999999999986442 24667899999999988876432 24789999999
Q ss_pred hcCCCCCCcCCC
Q 025813 194 TCQSQYGGFGKC 205 (247)
Q Consensus 194 ~~Q~~~GGf~~~ 205 (247)
+.|.++|+|-..
T Consensus 712 ~~Q~~dG~W~q~ 723 (759)
T PLN03012 712 NSQLENGDFPQQ 723 (759)
T ss_pred HcccCCCCCCCc
Confidence 999999999654
No 38
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.77 E-value=2.4e-17 Score=134.55 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=149.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHh-cccCCCCcccc-------------------------C-------
Q 025813 4 GSNLASTYCALAILKAVGYNFANIDSKSILTSMRN-LQQHDGSFMPI-------------------------H------- 50 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~-~q~~dGgf~~~-------------------------~------- 50 (247)
+.++..||+||.++.+||. +.+.++|.++||.+ +|..-+++... +
T Consensus 32 pdti~~TyYAi~i~s~lg~--evPr~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~ 109 (274)
T COG1689 32 PDTINDTYYAIKIYSLLGH--EVPRKEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFAV 109 (274)
T ss_pred cchhhhhhhhhhhhhhcCC--cCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHhh
Confidence 3457999999999999997 44678999999999 45554443210 0
Q ss_pred -C------CCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccc
Q 025813 51 -F------GAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123 (247)
Q Consensus 51 -~------~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~ 123 (247)
. +...-++.|||...+|.+.+. ...+++.+||++.|+++|++.+--...++...||.|+-+|...+.
T Consensus 110 ~lggs~~f~t~~~Le~ty~~~~~l~~~n~---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~--- 183 (274)
T COG1689 110 GLGGSEEFGTATPLEATYWMMSALNMVNY---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP--- 183 (274)
T ss_pred hcCceeecCCCchHHHHHHHHHHHHHhCc---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc---
Confidence 0 112358899999999999974 356778889999999998777655556677778777766654443
Q ss_pred cccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCC-CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 025813 124 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP-SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGF 202 (247)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~-~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf 202 (247)
++....|=.. --.+|||.-.|++. +-..-+|+++..|.+|+.... +.+.++||.+.||.+|||
T Consensus 184 -------------~~~v~~Fe~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~~--i~~~~rFI~slqN~nGGF 247 (274)
T COG1689 184 -------------KEEVRHFELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKYC--ISDHIRFIRSLQNQNGGF 247 (274)
T ss_pred -------------hHHHHhHHhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccCcC--chHHHHHHHHhhcCCCCe
Confidence 3334445443 44689999888863 445667999999999997533 477899999999999999
Q ss_pred CCCC-CCCccHHHHHHHHHHHHhcC
Q 025813 203 GKCP-GDLPDLYHSFYGYTAFSLLE 226 (247)
Q Consensus 203 ~~~p-~~~~d~~~T~~al~~L~ll~ 226 (247)
+..- ...|...+||+|++.|..+.
T Consensus 248 RRS~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 248 RRSYELGISTFENTYRALASLASLH 272 (274)
T ss_pred eeeEeccccchHHHHHHHHHHHHHh
Confidence 8875 56799999999999998764
No 39
>PLN02993 lupeol synthase
Probab=99.73 E-value=2.2e-17 Score=159.05 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=118.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCC-----CCC--CHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC
Q 025813 1 MHNGSNLASTYCALAILKAVGYNF-----ANI--DSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 73 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~-----~~~--~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~ 73 (247)
|-|+|.+-+|-.+|.+|.+++... +.+ ..+++++||++.|++||+|.. .+ +.+.+..|++++.+|...|..
T Consensus 557 miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G-~W-gv~y~YgT~~aL~aL~a~G~~ 634 (763)
T PLN02993 557 MVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYG-NW-GICFIYATWFALGGLAAAGKT 634 (763)
T ss_pred ccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCccc-cc-ccccCcHHHHHHHHHHHcCCC
Confidence 568999999999999999998521 111 237899999999999999975 56 667788899999999888864
Q ss_pred --CcccHHHHHHHHHhcCCCCCCccCCC------------CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHH
Q 025813 74 --SGMDRERAKAYILNCQSYDGGFGLTP------------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPL 139 (247)
Q Consensus 74 --~~~~~~~~~~~l~~~Q~~dGGFg~~p------------~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~ 139 (247)
+...++|+++||+++|++|||||... +..|++..|.+|+.+|...|..+.+ ...+++
T Consensus 635 ~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~---------~~~l~R 705 (763)
T PLN02993 635 YNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERD---------LIPLHR 705 (763)
T ss_pred CCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCC---------cHHHHH
Confidence 23578999999999999999999852 2468999999999999988874310 235789
Q ss_pred HHHHHHhcCCCCCcccc
Q 025813 140 LLSWCLQRQAADGGFQG 156 (247)
Q Consensus 140 ~~~~l~~~Q~~dGgf~~ 156 (247)
+++||++.|.+||+|--
T Consensus 706 gi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 706 AAKLIITSQLENGDFPQ 722 (763)
T ss_pred HHHHHHhccCCCCCCCC
Confidence 99999999999999863
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.61 E-value=3.2e-14 Score=124.90 Aligned_cols=212 Identities=14% Similarity=0.112 Sum_probs=130.8
Q ss_pred CcHHHHHHHHHHHHHhCC--CCCCCCHHHHHHHHH-------hcccCCCCccccCCC-CCcchHHHHHHHHHHHHhcCC-
Q 025813 5 SNLASTYCALAILKAVGY--NFANIDSKSILTSMR-------NLQQHDGSFMPIHFG-AEKDLRFVYCAAAICFLLEDW- 73 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~--~~~~~~~~~~i~~l~-------~~q~~dGgf~~~~~~-~~~d~~~ty~al~~l~ll~~~- 73 (247)
++++.++-.+.++..|.. .+..-.++++++||+ ++|++||+|..+... ..++++.|.+++..|......
T Consensus 18 q~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~ 97 (292)
T cd02897 18 QNMVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFI 97 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccC
Confidence 345555555555555542 122222466777776 489999999754321 367889998888888776532
Q ss_pred --CcccHHHHHHHHHhcCCCCCCccCCC---------CCCCChhhHHHHHHHHHHhCCccc--cc-------cccCCC-C
Q 025813 74 --SGMDRERAKAYILNCQSYDGGFGLTP---------GSESHGGGTYCAVASLRLMGFIED--NV-------LSKNTS-S 132 (247)
Q Consensus 74 --~~~~~~~~~~~l~~~Q~~dGGFg~~p---------~~~s~~~~T~~al~~L~~lg~~~~--~~-------~~~~~~-~ 132 (247)
+...++++++||++.|++||||+... +.++++..|.+++.+|...|..+. .+ .+.... .
T Consensus 98 ~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~~~ 177 (292)
T cd02897 98 YIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDSIS 177 (292)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcccCC
Confidence 23456899999999999999998531 123556788999999988876421 00 000000 0
Q ss_pred ---------------CCCCHHHHHHHHHhc---CCCCCccccc----------cC-CCCchhhHHHHHHHHHHhcCCCCC
Q 025813 133 ---------------SIIDLPLLLSWCLQR---QAADGGFQGR----------AN-KPSDTCYAFWIGSVLRMLGGYNLI 183 (247)
Q Consensus 133 ---------------~~~~~~~~~~~l~~~---Q~~dGgf~~~----------~~-~~~D~~~~y~a~~~L~lL~~~~~~ 183 (247)
.....+++++++.+. +..+|+|... +. ...|+.-|=|++.+|...+.....
T Consensus 178 ~~y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~ 257 (292)
T cd02897 178 DPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLA 257 (292)
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHh
Confidence 011234555555443 3345666521 11 234677676676666545421122
Q ss_pred CHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHH
Q 025813 184 DKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFS 223 (247)
Q Consensus 184 ~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ 223 (247)
...++++||.++|+.+|||+... .|..|+-||+
T Consensus 258 ~~~~~v~WL~~~q~~~Ggf~sTQ-------dt~~al~AL~ 290 (292)
T cd02897 258 EALPIVKWLAKQRNSLGGFSSTQ-------DTVVALQALA 290 (292)
T ss_pred HHHHHHHHHHHcCCCCCCcccHH-------HHHHHHHHHH
Confidence 35678899999999999998774 6888888875
No 41
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.60 E-value=1.1e-14 Score=135.98 Aligned_cols=221 Identities=20% Similarity=0.178 Sum_probs=156.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHhcccCC---------------CCccccCCC-CCcchHHHHHHHHHH
Q 025813 5 SNLASTYCALAILKAVGYNFANID-SKSILTSMRNLQQHD---------------GSFMPIHFG-AEKDLRFVYCAAAIC 67 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~~~~~~-~~~~i~~l~~~q~~d---------------Ggf~~~~~~-~~~d~~~ty~al~~l 67 (247)
+-++.|-+|++++...+.+.+-.+ ..+..+||++.|..+ |+|..+... +-.-...|-=++..+
T Consensus 415 sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~ 494 (760)
T KOG0497|consen 415 SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCC 494 (760)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHH
Confidence 567899999999988886422112 368899999988542 223211100 000011122233444
Q ss_pred HHhcCC------CcccHH---HHHHHHHhcCCCCCCccCCC-------------C--------CCCChhhHHHHHHHHHH
Q 025813 68 FLLEDW------SGMDRE---RAKAYILNCQSYDGGFGLTP-------------G--------SESHGGGTYCAVASLRL 117 (247)
Q Consensus 68 ~ll~~~------~~~~~~---~~~~~l~~~Q~~dGGFg~~p-------------~--------~~s~~~~T~~al~~L~~ 117 (247)
-+++.. ..++.+ ++++.|+..|+.+|||.... . .++.+..|..+|++|..
T Consensus 495 lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~ 574 (760)
T KOG0497|consen 495 LLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVY 574 (760)
T ss_pred HHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHh
Confidence 445432 345555 56778999999999998751 1 34678899999999999
Q ss_pred hCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHH---HHHHHHHhcCC--CCCCHHHHHHHH
Q 025813 118 MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFW---IGSVLRMLGGY--NLIDKEALRGFL 192 (247)
Q Consensus 118 lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~---a~~~L~lL~~~--~~~~~~~~~~~L 192 (247)
..+..++.+.++. ...+++++.||.+.|.+||+|.|.++ +|++|- ++.+|...|+. +...++++++||
T Consensus 575 F~k~~p~~r~~Ei---~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fl 647 (760)
T KOG0497|consen 575 FHKLFPGHRKKEI---EKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFL 647 (760)
T ss_pred hcccCccHHHHHH---HHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHH
Confidence 9887666554433 23578899999999999999999999 888887 44555555653 233478999999
Q ss_pred HhcCCCCCCcCCCCC------------CCccHHHHHHHHHHHHhcCCCCCCC
Q 025813 193 LTCQSQYGGFGKCPG------------DLPDLYHSFYGYTAFSLLEEPGLNP 232 (247)
Q Consensus 193 ~~~Q~~~GGf~~~p~------------~~~d~~~T~~al~~L~ll~~~~~~~ 232 (247)
++.|+.+||++..+. ..+++..|.||+.+|.+.++....+
T Consensus 648 l~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~ 699 (760)
T KOG0497|consen 648 LSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDP 699 (760)
T ss_pred HhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCccccc
Confidence 999999999999753 3578999999999999999987663
No 42
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.60 E-value=1.3e-14 Score=118.59 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHhcccCCCCccccCCCCCcc-hHHHHHHHHHHHHhcCCCcccHHHHHHHHHh-cCCCCCCccCC-----
Q 025813 26 NIDSKSILTSMRNLQQHDGSFMPIHFGAEKD-LRFVYCAAAICFLLEDWSGMDRERAKAYILN-CQSYDGGFGLT----- 98 (247)
Q Consensus 26 ~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d-~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~-~Q~~dGGFg~~----- 98 (247)
.++.++.++||..+|++||||..... -+| +..||+|+.++.+||. +.+.++|.++||.+ +|..-+||...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~--Lpdti~~TyYAi~i~s~lg~-evPr~EktiefL~d~~qt~~~~~a~~~~~l~ 81 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQ--LPDTINDTYYAIKIYSLLGH-EVPRKEKTIEFLYDQMQTAGVGVAMAIEFLR 81 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEecc--CcchhhhhhhhhhhhhhcCC-cCchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 36789999999999999999986542 233 5999999999999996 67889999999987 34555555431
Q ss_pred -----------------------------------CCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHH
Q 025813 99 -----------------------------------PGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSW 143 (247)
Q Consensus 99 -----------------------------------p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 143 (247)
.+...-+..||+...+|.+.+... .+.+..|
T Consensus 82 ~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~~--------------~eE~k~~ 147 (274)
T COG1689 82 ILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYEY--------------LEEMKEK 147 (274)
T ss_pred HhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcCc--------------hHHHHHH
Confidence 012234778999999999888653 3567888
Q ss_pred HHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCcc-HHHHHHHHHHH
Q 025813 144 CLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPD-LYHSFYGYTAF 222 (247)
Q Consensus 144 l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d-~~~T~~al~~L 222 (247)
+++-|+++|++.+-.-+.+.+..+|.|+-+|..++ -.+...+|=.+| -.+|||...|++.|. +..||+|+..|
T Consensus 148 v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~l 221 (274)
T COG1689 148 VIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCC-GDWGGFTEVPNSYPPYIEPTFYALRGL 221 (274)
T ss_pred HHHHhhhhccccccccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcc-ccCCCcccCCCCCCCccchHHHHHhHH
Confidence 88889988877654444556888888877776554 235666665555 458999999998755 77999999999
Q ss_pred HhcCCCCCC
Q 025813 223 SLLEEPGLN 231 (247)
Q Consensus 223 ~ll~~~~~~ 231 (247)
.+|++....
T Consensus 222 elL~~k~~i 230 (274)
T COG1689 222 ELLGGKYCI 230 (274)
T ss_pred HHHccCcCc
Confidence 999998443
No 43
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.51 E-value=1.5e-12 Score=114.64 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=124.9
Q ss_pred HHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCccCCC-------
Q 025813 30 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTP------- 99 (247)
Q Consensus 30 ~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGFg~~p------- 99 (247)
++.++.+.++|++||+|..+.. ..++++.|-+++..|...... +....+++++||++.|++||+|...-
T Consensus 55 ~~g~~r~l~~q~~dGsf~~w~~-~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 55 RQGYQRQLSYRKPDGSYAAWKN-RPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHhccCCCCCccCCCC-CCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 4556777788999999976543 577889888888888777532 23346789999999999999999752
Q ss_pred -----CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHH
Q 025813 100 -----GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVL 174 (247)
Q Consensus 100 -----~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L 174 (247)
+.++++..|.+++.+|...+...+....+ ....++++++||.++|.+ ..++.....+.-+|
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~----~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayAL 199 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQN----LDQSIRKAISYLENQLPN----------LQRPYALAITAYAL 199 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchh----hHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHH
Confidence 11367788999999988877542110000 023578999999998754 12332222234455
Q ss_pred HHhcCCCCCCHHHHHHHHHhcCCCCCCcCCC-----------CCCCccHHHHHHHHHHHHhcC
Q 025813 175 RMLGGYNLIDKEALRGFLLTCQSQYGGFGKC-----------PGDLPDLYHSFYGYTAFSLLE 226 (247)
Q Consensus 175 ~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~-----------p~~~~d~~~T~~al~~L~ll~ 226 (247)
++.+.. ..+++.++|.+.|+.+||+... +....++..|.||+.++...+
T Consensus 200 al~~~~---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~ 259 (297)
T cd02896 200 ALADSP---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG 259 (297)
T ss_pred HHcCCh---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC
Confidence 555532 4578899999999999998742 112347999999999988776
No 44
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.44 E-value=1.7e-13 Score=86.23 Aligned_cols=44 Identities=45% Similarity=0.731 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcC
Q 025813 183 IDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 226 (247)
Q Consensus 183 ~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~ 226 (247)
+|++++++||++||+++|||+.+|++++|++||||++++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999986
No 45
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.44 E-value=4.7e-13 Score=125.34 Aligned_cols=144 Identities=21% Similarity=0.176 Sum_probs=119.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCC-----CC--HHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC
Q 025813 1 MHNGSNLASTYCALAILKAVGYNFAN-----ID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 73 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~~~-----~~--~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~ 73 (247)
|-+.+.|.||-++|++|..+.+.+.. +. .+++++||++.|.+||+|.. +| +.+-+..|++++.++...|.-
T Consensus 556 ~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyG-sW-gvCFtY~t~Fa~~gl~aaGkt 633 (760)
T KOG0497|consen 556 MVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYG-SW-GVCFTYGTWFALRGLAAAGKT 633 (760)
T ss_pred eeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccc-hh-hHHHHHHHHHhcchhhhcchh
Confidence 45678999999999999999975421 21 25789999999999999984 66 666777778888888888743
Q ss_pred --CcccHHHHHHHHHhcCCCCCCccCCC------------CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHH
Q 025813 74 --SGMDRERAKAYILNCQSYDGGFGLTP------------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPL 139 (247)
Q Consensus 74 --~~~~~~~~~~~l~~~Q~~dGGFg~~p------------~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~ 139 (247)
+...+++++.||++.|++|||||.++ ++.+++..|.+|+.+|.+.|..+.+ ....+|
T Consensus 634 y~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd---------~~P~hr 704 (760)
T KOG0497|consen 634 YENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERD---------PLPLHR 704 (760)
T ss_pred hhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccc---------cchHHH
Confidence 56778999999999999999999973 3468999999999999999987522 346899
Q ss_pred HHHHHHhcCCCCCccc
Q 025813 140 LLSWCLQRQAADGGFQ 155 (247)
Q Consensus 140 ~~~~l~~~Q~~dGgf~ 155 (247)
++..|...|.++|-|.
T Consensus 705 ~ak~linsQ~~nGdfp 720 (760)
T KOG0497|consen 705 AAKVLINSQLENGDFP 720 (760)
T ss_pred HHHHHHhcccccCCcc
Confidence 9999999999999986
No 46
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.39 E-value=4.1e-13 Score=84.48 Aligned_cols=44 Identities=43% Similarity=0.774 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhc
Q 025813 135 IDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLG 178 (247)
Q Consensus 135 ~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~ 178 (247)
+|++++++||.++|++||||+++|++++|+++|||++++|++||
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999986
No 47
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.38 E-value=2.3e-11 Score=107.21 Aligned_cols=187 Identities=15% Similarity=0.041 Sum_probs=128.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHhcccCCCCccccCC-------CC----CcchHHHHHHHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANID---SKSILTSMRNLQQHDGSFMPIHF-------GA----EKDLRFVYCAAAICF 68 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~---~~~~i~~l~~~q~~dGgf~~~~~-------~~----~~d~~~ty~al~~l~ 68 (247)
.+++.+.|-+++.+|...++.. .++ .++.++||.+.|++||+|..... ++ ++++..|-+++.+|.
T Consensus 77 ~~~s~wlTA~v~~~l~~a~~~~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~ 155 (297)
T cd02896 77 RPSSTWLTAFVVKVFSLARKYI-PVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQ 155 (297)
T ss_pred CCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHH
Confidence 4678888999999999887532 233 36799999999999999986321 11 245666666666665
Q ss_pred HhcCCC-------cccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHH
Q 025813 69 LLEDWS-------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL 141 (247)
Q Consensus 69 ll~~~~-------~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 141 (247)
-.+... ...++++++||.++|.+- .++..+..+..+|++.|.. ...++.
T Consensus 156 ~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~----------~~~Y~~Al~ayALal~~~~--------------~~~~a~ 211 (297)
T cd02896 156 EARSICPPEVQNLDQSIRKAISYLENQLPNL----------QRPYALAITAYALALADSP--------------LSHAAN 211 (297)
T ss_pred hhhccccccchhhHHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcCCh--------------hhHHHH
Confidence 554321 125679999999987651 2344455455567776653 367899
Q ss_pred HHHHhcCCCCCccccccC-----------CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCc
Q 025813 142 SWCLQRQAADGGFQGRAN-----------KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLP 210 (247)
Q Consensus 142 ~~l~~~Q~~dGgf~~~~~-----------~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~ 210 (247)
++|.++|..|||+...+. ...++.-|=||+-++-..+ ......++++||.+.|+..|||...
T Consensus 212 ~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~--~~~~a~~iv~WL~~qr~~~Ggf~sT----- 284 (297)
T cd02896 212 RKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG--DIEYANPIARWLTEQRNYGGGFGST----- 284 (297)
T ss_pred HHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCCCCeehH-----
Confidence 999999999999874221 1225666666655443344 2335678999999999999999865
Q ss_pred cHHHHHHHHHHHH
Q 025813 211 DLYHSFYGYTAFS 223 (247)
Q Consensus 211 d~~~T~~al~~L~ 223 (247)
-.|..||-||+
T Consensus 285 --QdTvval~AL~ 295 (297)
T cd02896 285 --QDTVVALQALA 295 (297)
T ss_pred --HHHHHHHHHHh
Confidence 36777887775
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.32 E-value=9.1e-13 Score=98.70 Aligned_cols=105 Identities=25% Similarity=0.255 Sum_probs=40.8
Q ss_pred HHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhH
Q 025813 30 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGT 108 (247)
Q Consensus 30 ~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T 108 (247)
+++++||.+.|+|||+|.. ++ ..+...|++++.++..++.. ....++++++||+++|++||||+..+. ++...|
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~-~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t 76 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGY-NW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred ccccccccccccccccccc-cc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence 5789999999999999974 43 35678888888888888743 345679999999999999999998733 346667
Q ss_pred HHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCC
Q 025813 109 YCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 149 (247)
Q Consensus 109 ~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 149 (247)
..++.+|.+.+.... ....+++++||++.|.
T Consensus 77 ~~~~~~l~~~~~~~~----------~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPD----------DEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT------------HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccC
Confidence 777888776655321 2347899999999864
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.27 E-value=3.9e-12 Score=95.23 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccc
Q 025813 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 157 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~ 157 (247)
++++++||++.|++||+|+... +++...|++++.+|...+.... ...++++++||.++|++||||...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~----------~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAV----------DEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp ------------------------------------------TS-S----------SBSSHHHHHHHHH---TTS--S-T
T ss_pred Cccccccccccccccccccccc--cccccccccccccccccCCCCc----------HHHHHHHHHHHHHhcCCCCCCCCc
Confidence 4688999999999999998653 3678889898988888875321 345789999999999999999977
Q ss_pred cCCCCchhhHHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCC
Q 025813 158 ANKPSDTCYAFWIGSVLRMLGGYN-LIDKEALRGFLLTCQS 197 (247)
Q Consensus 158 ~~~~~D~~~~y~a~~~L~lL~~~~-~~~~~~~~~~L~~~Q~ 197 (247)
+.. ....+-.++.++.+.+..+ ...++++++||++.|.
T Consensus 69 ~~~--~~~~t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 69 GGE--YVSMTAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp S----HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred CCC--CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 332 2223334455554444321 1236899999998875
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.13 E-value=5e-09 Score=91.04 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=110.2
Q ss_pred HHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCccCCCC------
Q 025813 30 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPG------ 100 (247)
Q Consensus 30 ~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGFg~~p~------ 100 (247)
++.+++|.++|++||||..++..+.++++.|.+++..|...... +...++++++||.+.|++||+|.....
T Consensus 52 ~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~ 131 (282)
T cd02891 52 RKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREM 131 (282)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh
Confidence 57899999999999999876543378999998888888766432 223478999999999999999987533
Q ss_pred ---CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHh
Q 025813 101 ---SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRML 177 (247)
Q Consensus 101 ---~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL 177 (247)
..+....|.+++.+|...|... ...+.++++||.+.... ..+......+..+|.++
T Consensus 132 ~~~~~~~~~~tA~al~~L~~~g~~~-----------~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~ 190 (282)
T cd02891 132 KGGVDDSVSLTAYVLIALAEAGKAC-----------DASIEKALAYLETQLDG----------LLDPYALAILAYALALA 190 (282)
T ss_pred cCCcCCCcchHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHc
Confidence 2345567888888888887742 12467899999987643 11222223344556666
Q ss_pred cCCCCCCHHHHHHHHHhcCCCCCCc-------CCCCCCCccHHHHHHHHHHHHh
Q 025813 178 GGYNLIDKEALRGFLLTCQSQYGGF-------GKCPGDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 178 ~~~~~~~~~~~~~~L~~~Q~~~GGf-------~~~p~~~~d~~~T~~al~~L~l 224 (247)
|... ..+++++-|.+.-...++. ....+...+...|.+++.+...
T Consensus 191 g~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~ 242 (282)
T cd02891 191 GDST--RADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLK 242 (282)
T ss_pred CccH--HHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHh
Confidence 5421 1234455554433333321 1112233445666666666543
No 51
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.09 E-value=4e-09 Score=92.56 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=93.1
Q ss_pred cCCCcccHHHHHHHHH-------hcCCCCCCccCCCCC--CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHH
Q 025813 71 EDWSGMDRERAKAYIL-------NCQSYDGGFGLTPGS--ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL 141 (247)
Q Consensus 71 ~~~~~~~~~~~~~~l~-------~~Q~~dGGFg~~p~~--~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 141 (247)
+..++..++++.+||. ++|++||||+..+.. +++.+.|..++.+|.......+ + ....+++++
T Consensus 37 ~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~-v-------~~~~i~ra~ 108 (292)
T cd02897 37 GQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIY-I-------DENVLQQAL 108 (292)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCC-C-------CHHHHHHHH
Confidence 3344444455555554 699999999887554 7889999999999988764210 0 022478899
Q ss_pred HHHHhcCCCCCcccccc---------CCCCchhhHHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCCCCCcCCCCCCCcc
Q 025813 142 SWCLQRQAADGGFQGRA---------NKPSDTCYAFWIGSVLRMLGGYN-LIDKEALRGFLLTCQSQYGGFGKCPGDLPD 211 (247)
Q Consensus 142 ~~l~~~Q~~dGgf~~~~---------~~~~D~~~~y~a~~~L~lL~~~~-~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d 211 (247)
+||.++|++||||.... +...++.-|-+++.+|...+... ...++++++||.+.+.. ..+
T Consensus 109 ~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~ 178 (292)
T cd02897 109 TWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISD 178 (292)
T ss_pred HHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCC
Confidence 99999999999998421 11122333455666665555432 12358999999987753 356
Q ss_pred HHHHHHHHHHHHhcC
Q 025813 212 LYHSFYGYTAFSLLE 226 (247)
Q Consensus 212 ~~~T~~al~~L~ll~ 226 (247)
++.+..+..+|.+.+
T Consensus 179 ~y~~al~a~AL~~~~ 193 (292)
T cd02897 179 PYTLALAAYALTLAG 193 (292)
T ss_pred HHHHHHHHHHHHHcC
Confidence 788888888888887
No 52
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.01 E-value=6.9e-09 Score=90.15 Aligned_cols=132 Identities=21% Similarity=0.130 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCC-CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccc
Q 025813 78 RERAKAYILNCQSYDGGFGLTPGS-ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 156 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~~-~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~ 156 (247)
+++++++|+++|++||||+..++. +++...|.+++..|..+....+ . ....++++++||.+.|.+||+|..
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~-v-------~~~~i~ra~~~L~~~q~~~g~~~~ 122 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYID-V-------DENVLARALGWLVPQQKEDGSFRE 122 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCC-C-------CHHHHHHHHHHHHhccCCCCCcCC
Confidence 468899999999999999999887 8899999999999987644310 0 012378899999999999999986
Q ss_pred ccC---------CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCC
Q 025813 157 RAN---------KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227 (247)
Q Consensus 157 ~~~---------~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~ 227 (247)
... ...+...+-+++.+|...+......++++++||.+.... ..+.+.......+|.++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~ 192 (282)
T cd02891 123 LGPVIHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD 192 (282)
T ss_pred CCCccCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc
Confidence 433 123344455666666665643222467899999886642 2344555555566666653
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.90 E-value=4.3e-09 Score=90.32 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=104.5
Q ss_pred HHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHhcCCCCCCccCCCC---------
Q 025813 33 LTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSG---MDRERAKAYILNCQSYDGGFGLTPG--------- 100 (247)
Q Consensus 33 i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~---~~~~~~~~~l~~~Q~~dGGFg~~p~--------- 100 (247)
.+-+.+.|++||+|..+.....+.++.|-+++..+......-. ..++++++||.+.|++||.|.....
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~ 82 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG 82 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence 3446667999999998723478899999999999888875432 3457999999999999999976421
Q ss_pred CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc---------------------------------
Q 025813 101 SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR--------------------------------- 147 (247)
Q Consensus 101 ~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------- 147 (247)
.+.++..|.+++.+|.-.+...+....+ ....++++++||.+.
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~----~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L 158 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDSEKPE----YENAINKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKL 158 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTTTHHC----HHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCeeehHHHHHHHHhhhhhccccchh----hHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 1234566777777776665211000000 011234444444433
Q ss_pred ---CCCCCccccccCCC--------------CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCc
Q 025813 148 ---QAADGGFQGRANKP--------------SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLP 210 (247)
Q Consensus 148 ---Q~~dGgf~~~~~~~--------------~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~ 210 (247)
...+|+...-.... .++.-|=+++ |+++..........+++||.+.|+..|||+...
T Consensus 159 ~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaL--La~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQ---- 232 (246)
T PF07678_consen 159 NSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYAL--LALLKRGDLEEASPIVRWLISQRNSGGGFGSTQ---- 232 (246)
T ss_dssp HCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHH----
T ss_pred HHhhhhccccCcccCCcccccccccccccchHHHHHHHHHH--HHHHhcccHHHHHHHHHHHHHhcCCCCccCcHH----
Confidence 22344442111100 1233333333 444433222345689999999999999998753
Q ss_pred cHHHHHHHHHHHH
Q 025813 211 DLYHSFYGYTAFS 223 (247)
Q Consensus 211 d~~~T~~al~~L~ 223 (247)
.|..|+-||+
T Consensus 233 ---dTvvaL~AL~ 242 (246)
T PF07678_consen 233 ---DTVVALQALA 242 (246)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 5667777665
No 54
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.75 E-value=6.1e-08 Score=89.99 Aligned_cols=178 Identities=20% Similarity=0.214 Sum_probs=116.5
Q ss_pred CCCccccCC-CCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCC-------------------C
Q 025813 43 DGSFMPIHF-GAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGS-------------------E 102 (247)
Q Consensus 43 dGgf~~~~~-~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~-------------------~ 102 (247)
-|+|..... ...+|...|--++..+ ....+..+.+++++||..+|+..|||...+.. .
T Consensus 249 ~g~W~f~~~~~~ypd~d~T~~~~~al--~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~ 326 (517)
T COG1657 249 PGGWGFSNINTGYPDADDTAGVVRAL--IGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDP 326 (517)
T ss_pred CCccceeecccCCCCchhhhHHHHHH--HhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccC
Confidence 456653221 1234444444443333 33334567788999999999999999886432 2
Q ss_pred CChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCC
Q 025813 103 SHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL 182 (247)
Q Consensus 103 s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~ 182 (247)
+-+..|...+..|..+....+.- ....+++++.||++.|.++|.|.++++ +|++|-...++..+.....
T Consensus 327 s~adct~~~~~~l~a~~~yl~~~-------~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~ 395 (517)
T COG1657 327 STADCTHRVVLALAALNAYLEAY-------DGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGE 395 (517)
T ss_pred CcccCCCccHHHHhhhhhccccc-------cCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCc
Confidence 33444445555555554432100 024578899999999999999999998 7888887777776654322
Q ss_pred C-----CHHHHHHHHHhcCCCCCCcCCCCCCCcc----------HHHHHHHHHHHHhcCCCCCCCC
Q 025813 183 I-----DKEALRGFLLTCQSQYGGFGKCPGDLPD----------LYHSFYGYTAFSLLEEPGLNPL 233 (247)
Q Consensus 183 ~-----~~~~~~~~L~~~Q~~~GGf~~~p~~~~d----------~~~T~~al~~L~ll~~~~~~~~ 233 (247)
. -+.+++.|+..||.++|||+..-...++ ...|-|++..+-...+.+-+.+
T Consensus 396 ~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i 461 (517)
T COG1657 396 TDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAI 461 (517)
T ss_pred cccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhh
Confidence 2 2578999999999999999886432221 4578888888877766644433
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.47 E-value=9.4e-08 Score=88.78 Aligned_cols=145 Identities=17% Similarity=0.087 Sum_probs=106.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCC--c
Q 025813 1 MHNGSNLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS--G 75 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~--~ 75 (247)
|.+++.+.||...+.+|..+..-.+ ..+.+++++||.+.|.++|.|.. .+ +...+..+..++.++++.+... .
T Consensus 323 ~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g-~w-~v~~iY~~s~a~~~l~~~g~~~~~~ 400 (517)
T COG1657 323 MVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYG-RW-GVCYIYGTSGALSALALVGETDENE 400 (517)
T ss_pred cccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceee-EE-EEEEEEehhhhhhhhhccCccccch
Confidence 5577888888888888888775322 34568999999999999999975 44 4555666777888888887542 3
Q ss_pred ccHHHHHHHHHhcCCCCCCccCCCC----------CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHH
Q 025813 76 MDRERAKAYILNCQSYDGGFGLTPG----------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCL 145 (247)
Q Consensus 76 ~~~~~~~~~l~~~Q~~dGGFg~~p~----------~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (247)
..+++++.|+.++|.+||||+.... ..+-+..|.+|+..+......+ ...++..++++.
T Consensus 401 ~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~-----------~~~i~~~~~~~~ 469 (517)
T COG1657 401 VLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPN-----------QEAIKPGINLLV 469 (517)
T ss_pred HHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccc-----------hhhhcccccccc
Confidence 4678999999999999999998622 2233444666666655544432 223677899999
Q ss_pred hcCCCCCcccccc
Q 025813 146 QRQAADGGFQGRA 158 (247)
Q Consensus 146 ~~Q~~dGgf~~~~ 158 (247)
+.|.++|.|...+
T Consensus 470 ~~~~~~g~~~~~~ 482 (517)
T COG1657 470 SDQEPDGSWREAE 482 (517)
T ss_pred cCcCCCCccccce
Confidence 9999999998644
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.24 E-value=3.1e-05 Score=66.42 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=83.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHhcccCCCCccccCCC------C--CcchHHHHHHHHHHHHh
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDS---KSILTSMRNLQQHDGSFMPIHFG------A--EKDLRFVYCAAAICFLL 70 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~---~~~i~~l~~~q~~dGgf~~~~~~------~--~~d~~~ty~al~~l~ll 70 (247)
+.+++++-|-+++..|....+- -.+|. ++.++||.+.|++||+|.....- + ..++..|-+.+.+|.-.
T Consensus 22 ~~~~s~WLTAfv~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~ 100 (246)
T PF07678_consen 22 DSPSSTWLTAFVVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEA 100 (246)
T ss_dssp TSSBBHHHHHHHHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhh
Confidence 4678999999999999988853 33343 68899999999999999753210 0 12333443333322222
Q ss_pred cCC-------------------------------------------CcccHHHHHHHHHhcCCCCCCccCCCCCC-----
Q 025813 71 EDW-------------------------------------------SGMDRERAKAYILNCQSYDGGFGLTPGSE----- 102 (247)
Q Consensus 71 ~~~-------------------------------------------~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~----- 102 (247)
+.. +....+++.+-|.+....+|+.-..+...
T Consensus 101 ~~~~~~~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~ 180 (246)
T PF07678_consen 101 GSLCDSEKPEYENAINKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSS 180 (246)
T ss_dssp HCCHTTTHHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSS
T ss_pred hhhccccchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccc
Confidence 210 01112344444445555555532221111
Q ss_pred ---------CChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccc
Q 025813 103 ---------SHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 157 (247)
Q Consensus 103 ---------s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~ 157 (247)
.++..|.+|+.++...+.. .....+++||.+.|+..|||...
T Consensus 181 ~~~~~~~~s~~vEtTaYaLLa~l~~~~~-------------~~~~~iv~WL~~qr~~~Ggf~ST 231 (246)
T PF07678_consen 181 SSPWSRGSSLDVETTAYALLALLKRGDL-------------EEASPIVRWLISQRNSGGGFGST 231 (246)
T ss_dssp SSTTT-SHHHHHHHHHHHHHHHHHHTCH-------------HHHHHHHHHHHHCTTTTSSTSSH
T ss_pred cccccccchHHHHHHHHHHHHHHhcccH-------------HHHHHHHHHHHHhcCCCCccCcH
Confidence 2467777777666555432 23567999999999999999853
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.74 E-value=0.00033 Score=61.09 Aligned_cols=142 Identities=14% Similarity=0.042 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHhc-C-CC---cccHHHHHHHHHhcCCCCCCccCCCCCCC--ChhhHH------HHHHHHHHhCC--
Q 025813 56 DLRFVYCAAAICFLLE-D-WS---GMDRERAKAYILNCQSYDGGFGLTPGSES--HGGGTY------CAVASLRLMGF-- 120 (247)
Q Consensus 56 d~~~ty~al~~l~ll~-~-~~---~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s--~~~~T~------~al~~L~~lg~-- 120 (247)
|=..|+..+.-|.-+- . .+ .....|+++||++.|+++|||...--... +-.-|| .++..|..+-.
T Consensus 42 DN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~ 121 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGK 121 (290)
T ss_pred cCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhcc
Confidence 4455666554443331 1 11 23457999999999999999987632111 111122 34444433311
Q ss_pred ccccccccCC-CCCCCCHHHHHHHHHhcCCCCCccccccCCCCc----------------hhhHHHHHHHHHHhcCCCCC
Q 025813 121 IEDNVLSKNT-SSSIIDLPLLLSWCLQRQAADGGFQGRANKPSD----------------TCYAFWIGSVLRMLGGYNLI 183 (247)
Q Consensus 121 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D----------------~~~~y~a~~~L~lL~~~~~~ 183 (247)
.+........ ..-...++++++||++.|-++||+.+.|+..-| .+..-.+..+..|+....+.
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 201 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS 201 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC
Confidence 1101100000 000235778999999999999988766653211 12212233333444432221
Q ss_pred -----CHHHHHHHHHhcCC
Q 025813 184 -----DKEALRGFLLTCQS 197 (247)
Q Consensus 184 -----~~~~~~~~L~~~Q~ 197 (247)
.++.++.|+.+..-
T Consensus 202 ~~i~~ai~~A~~W~~~~~i 220 (290)
T TIGR02474 202 AEIKEAIRAGVAWFDTSRI 220 (290)
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 35789999988773
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=96.98 E-value=0.024 Score=56.22 Aligned_cols=90 Identities=12% Similarity=-0.029 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCCccccccC-CCCchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCCCcCCCCCCCccHHH
Q 025813 138 PLLLSWCLQRQAADGGFQGRAN-KPSDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGKCPGDLPDLYH 214 (247)
Q Consensus 138 ~~~~~~l~~~Q~~dGgf~~~~~-~~~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~ 214 (247)
+++.+||.+.++.-|| +.|. -+.|....-|.+..|.-||-...+ .++.+.+.+-++-. .| .++...|+..
T Consensus 245 ~~~~~yL~~~~~~~~g--~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~-~~----~~~~~~Dl~~ 317 (784)
T PLN02279 245 AGCLRYLRSLLQKFGN--AVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWL-QG----EEEIFLDLAT 317 (784)
T ss_pred hHHHHHHHHHHHhcCC--CCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhc-cc----ccCCCCCHHH
Confidence 5788888776554443 3444 245677778888888888854333 23455555544332 22 2344579999
Q ss_pred HHHHHHHHHhcCCCCCCCCC
Q 025813 215 SFYGYTAFSLLEEPGLNPLC 234 (247)
Q Consensus 215 T~~al~~L~ll~~~~~~~~~ 234 (247)
|..+.-.|-+.|+.-...+.
T Consensus 318 tAl~FRLLR~hGy~VS~dvf 337 (784)
T PLN02279 318 CALAFRILRLNGYDVSSDPL 337 (784)
T ss_pred HHHHHHHHHHcCCCCChhHH
Confidence 99999999999987554443
No 59
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.96 E-value=0.026 Score=55.97 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCC-CCccccccC-CCCchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCC-CcCCCCCCCccH
Q 025813 138 PLLLSWCLQRQAA-DGGFQGRAN-KPSDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYG-GFGKCPGDLPDL 212 (247)
Q Consensus 138 ~~~~~~l~~~Q~~-dGgf~~~~~-~~~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~G-Gf~~~p~~~~d~ 212 (247)
+++.+||.+.... +|| .|. -+.|...--|.+..|--||-...+ .++.+.++|-++-...| ||+. ....+|+
T Consensus 285 ~~cl~YL~~~~~k~~Gg---VP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dl 360 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGG---VPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDI 360 (800)
T ss_pred hHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCH
Confidence 4567777665433 333 333 234666667777888777754333 23456677766422223 3322 1235799
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 025813 213 YHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 213 ~~T~~al~~L~ll~~~~~ 230 (247)
..|..++-.|-+.|+.-.
T Consensus 361 d~TALaFRLLRqhGy~VS 378 (800)
T PLN02592 361 DDTAMGFRLLRLHGHQVS 378 (800)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999998643
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.94 E-value=0.0095 Score=52.09 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCC---CCCCC-CHHHHHHHHHhcccCCCCccccCC-CC-------CcchHHHHHHHHHHHHhcCC-C-
Q 025813 9 STYCALAILKAVGY---NFANI-DSKSILTSMRNLQQHDGSFMPIHF-GA-------EKDLRFVYCAAAICFLLEDW-S- 74 (247)
Q Consensus 9 ~Ty~a~~~L~~lg~---~~~~~-~~~~~i~~l~~~q~~dGgf~~~~~-~~-------~~d~~~ty~al~~l~ll~~~-~- 74 (247)
.|+..+.-|.-+=. +.... -..+.++||.++|+++|||..... .+ ..|...+ -++..|..+... .
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~-~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV-NVLTLLDDIANGKDP 123 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH-HHHHHHHHHHhccCC
Confidence 46666666665421 11101 136899999999999999976422 11 1122222 122222222110 0
Q ss_pred ------------cccHHHHHHHHHhcCCCCCC----ccCCCC-----------CCCChhhHHHHHHHHHHh---CCcccc
Q 025813 75 ------------GMDRERAKAYILNCQSYDGG----FGLTPG-----------SESHGGGTYCAVASLRLM---GFIEDN 124 (247)
Q Consensus 75 ------------~~~~~~~~~~l~~~Q~~dGG----Fg~~p~-----------~~s~~~~T~~al~~L~~l---g~~~~~ 124 (247)
....+|+++||++.|-++|| |+..-. .|+-..++...+.++.+| -..+++
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~ 203 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAE 203 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHH
Confidence 12357999999999988875 443311 122222233333333333 222332
Q ss_pred ccccCCCCCCCCHHHHHHHHHhcCCCC
Q 025813 125 VLSKNTSSSIIDLPLLLSWCLQRQAAD 151 (247)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~Q~~d 151 (247)
+ ...++.+++|+.+.+-++
T Consensus 204 i--------~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 204 I--------KEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred H--------HHHHHHHHHHHHHCCCCC
Confidence 2 125788999999987664
No 61
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.39 Score=50.76 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHh-------cccCCCCccccCC-CCCcchHHHHHHHHHHHHhcCC---Cc
Q 025813 7 LASTYCALAILKAVGYNFANIDSKSILTSMRN-------LQQHDGSFMPIHF-GAEKDLRFVYCAAAICFLLEDW---SG 75 (247)
Q Consensus 7 l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~-------~q~~dGgf~~~~~-~~~~d~~~ty~al~~l~ll~~~---~~ 75 (247)
++.++.++.-|...++ +...-++++++||.. -+++||+|..+-. ....-++.|-+.+..+.....+ +.
T Consensus 945 faPni~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~ 1023 (1436)
T KOG1366|consen 945 FAPNIYVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDP 1023 (1436)
T ss_pred ccchhhHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecH
Confidence 3445555666665553 433345777777766 2578999976421 1345567777777777666543 33
Q ss_pred ccHHHHHHHHHhcCCCCCCccCC
Q 025813 76 MDRERAKAYILNCQSYDGGFGLT 98 (247)
Q Consensus 76 ~~~~~~~~~l~~~Q~~dGGFg~~ 98 (247)
..+.++++|+...|.++|.|-..
T Consensus 1024 ~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1024 NVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHHHHHhhccCceEecc
Confidence 44578999999999999998654
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=94.30 E-value=0.19 Score=44.85 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=67.0
Q ss_pred CcchHHHHHHHHHHHHhcCC--C-cc-------cHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccc
Q 025813 54 EKDLRFVYCAAAICFLLEDW--S-GM-------DRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 123 (247)
Q Consensus 54 ~~d~~~ty~al~~l~ll~~~--~-~~-------~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~ 123 (247)
...+.....|+.++.-+... . .. .++++++.|++.|.+||-||. +.+|--|+++|...+....
T Consensus 183 ~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~ 255 (326)
T PF01122_consen 183 QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPS 255 (326)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SS
T ss_pred CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCc
Confidence 33566666666666555421 1 11 246788889999999999984 7999999999998877532
Q ss_pred cccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcC
Q 025813 124 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFG 203 (247)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~ 203 (247)
+. .-+..++.++++... ++|.|..- .-+..+|-.|......|+.. ..|+.++|-+.
T Consensus 256 ~~--------~w~C~k~~~~ll~~i-~~G~F~nP----------~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 256 ES--------EWNCQKALDALLKEI-SQGAFQNP----------MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp HH--------HHHHHHHHHHHHHHH-TTTTT-SH----------HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred ch--------hhHHHHHHHHHHHHh-hcCCCCCH----------HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence 10 124678889988853 58999841 12445554443323333322 45888887765
Q ss_pred C
Q 025813 204 K 204 (247)
Q Consensus 204 ~ 204 (247)
-
T Consensus 312 ~ 312 (326)
T PF01122_consen 312 P 312 (326)
T ss_dssp -
T ss_pred c
Confidence 3
No 63
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=94.24 E-value=5.9 Score=38.77 Aligned_cols=198 Identities=18% Similarity=0.159 Sum_probs=111.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCC-----Cccc--------cC--------------CCCCc
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDG-----SFMP--------IH--------------FGAEK 55 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dG-----gf~~--------~~--------------~~~~~ 55 (247)
...++..+|+|+..|+.||... .+.+.+.+++++...+.- -|.. +. ....+
T Consensus 45 ~~~dLes~yyav~glk~Lg~~~--~~~~~~C~~~~~~~~~s~~~~e~lfya~~~~~~L~C~~~~~~~~~~~l~~~l~~~s 122 (636)
T PF05817_consen 45 PSSDLESAYYAVLGLKLLGIKV--PDSKAACKFLKKALDESSNDLESLFYAASASKALKCKVSVSNEVKSLLKAALSEDS 122 (636)
T ss_pred CcccHHHHHHHHhhHHHhCCCC--CChhhHHHHHHHhhccccchHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhcCCc
Confidence 3578999999999999999643 457888888888533211 1110 00 01346
Q ss_pred chHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCC
Q 025813 56 DLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSI 134 (247)
Q Consensus 56 d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~ 134 (247)
.+...|+++.++..+|.. ...+.++.++-|...+.+|. .+.++-.|+.+++.++..-. +
T Consensus 123 ~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa~L~~~a~-l--------- 182 (636)
T PF05817_consen 123 SVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAAQLSKQAD-L--------- 182 (636)
T ss_pred cHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHHhhccchh-h---------
Confidence 777789999999999853 23477888887877777753 46667778888888765321 0
Q ss_pred CC-HHHHHHHHHhcCCCCCccccccCCCCchhhHHHHH-HHHHHhcCCCCCCHH---HHHHHHHhcCCCCCCcCCCCCCC
Q 025813 135 ID-LPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIG-SVLRMLGGYNLIDKE---ALRGFLLTCQSQYGGFGKCPGDL 209 (247)
Q Consensus 135 ~~-~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~-~~L~lL~~~~~~~~~---~~~~~L~~~Q~~~GGf~~~p~~~ 209 (247)
.. .++.-+=+.+--.-||.+-...++..-+......+ +-....++...++.+ +..+||++.. .++.
T Consensus 183 ~~~~~~ieD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr--------~v~s- 253 (636)
T PF05817_consen 183 ADIVERIEDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRR--------SVQS- 253 (636)
T ss_pred hHHHHHHHHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCC--------CCCC-
Confidence 01 12222333322223444443333333232222111 112234555556544 5678888766 3443
Q ss_pred ccHHHHHHHHHHHHhcCCCCC-CCC
Q 025813 210 PDLYHSFYGYTAFSLLEEPGL-NPL 233 (247)
Q Consensus 210 ~d~~~T~~al~~L~ll~~~~~-~~~ 233 (247)
+...|.-+.+|..+....+ .|+
T Consensus 254 --~k~a~~l~~al~~L~~N~~~~Pv 276 (636)
T PF05817_consen 254 --PKDAFNLLEALKSLSSNKFHVPV 276 (636)
T ss_pred --HHHHHHHHHHHHHHhhCCccccE
Confidence 3445555556655555433 444
No 64
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=93.48 E-value=0.11 Score=45.63 Aligned_cols=142 Identities=17% Similarity=0.084 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHhcCC--C---cccHHHHHHHHHhcCCCCCCccCC-CCCC-CChhhHHH---HHHHHHHh-----CC
Q 025813 56 DLRFVYCAAAICFLLEDW--S---GMDRERAKAYILNCQSYDGGFGLT-PGSE-SHGGGTYC---AVASLRLM-----GF 120 (247)
Q Consensus 56 d~~~ty~al~~l~ll~~~--~---~~~~~~~~~~l~~~Q~~dGGFg~~-p~~~-s~~~~T~~---al~~L~~l-----g~ 120 (247)
|=..|+..+.-|.-+-.. + .....|+++||++.|.++|||... |... =|-.-||- .+..|.+| +.
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~ 116 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK 116 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence 444555555444333211 1 123579999999999999999885 3211 12233442 23344333 22
Q ss_pred ccccccccCCC-CCCCCHHHHHHHHHhcCCC----CCcccc------------ccCCCCchhhHHHHHHHHHHhcCCCCC
Q 025813 121 IEDNVLSKNTS-SSIIDLPLLLSWCLQRQAA----DGGFQG------------RANKPSDTCYAFWIGSVLRMLGGYNLI 183 (247)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~Q~~----dGgf~~------------~~~~~~D~~~~y~a~~~L~lL~~~~~~ 183 (247)
.+.+.+.+..+ .-...+++++++|+..|-. --+|.. |....+-.+..--+..+..|+....+.
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 22211110000 0012467899999999973 235542 222223334434455555566543222
Q ss_pred -----CHHHHHHHHHhcCC
Q 025813 184 -----DKEALRGFLLTCQS 197 (247)
Q Consensus 184 -----~~~~~~~~L~~~Q~ 197 (247)
.++.++.||.+..-
T Consensus 197 ~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 197 PEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp HHHHHHHHHHHHHHCCTSE
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 35778999987664
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=91.68 E-value=0.64 Score=46.39 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=45.5
Q ss_pred HHHHHHHHhccc--CCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCC--CCCCh
Q 025813 30 KSILTSMRNLQQ--HDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPG--SESHG 105 (247)
Q Consensus 30 ~~~i~~l~~~q~--~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~--~~s~~ 105 (247)
+..++-++++-. .||.... -+..|.| |+...-++....+.-...++||+..|.+||+||..+. ...-+
T Consensus 75 ~~~~~~ir~~l~~~~~g~~S~-------S~YDTAW-VAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~l 146 (800)
T PLN02592 75 KERVKTVKSMLSSMEDGEISI-------SAYDTAW-VALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRL 146 (800)
T ss_pred HHHHHHHHHHHhcccCCCcCC-------cHHHhHH-HhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence 355666666533 3443322 1344555 3322223222223445789999999999999998532 12345
Q ss_pred hhHHHHHHHHHH
Q 025813 106 GGTYCAVASLRL 117 (247)
Q Consensus 106 ~~T~~al~~L~~ 117 (247)
.+|..||.+|.-
T Consensus 147 l~TLAcvlAL~~ 158 (800)
T PLN02592 147 INTLACVVALKS 158 (800)
T ss_pred HhHHHHHHHHHH
Confidence 667777766654
No 66
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=91.00 E-value=7.4 Score=38.11 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=90.2
Q ss_pred CcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCC
Q 025813 54 EKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSS 133 (247)
Q Consensus 54 ~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~ 133 (247)
.+|+..+|+++.++..||.. ..+.+.+++++.+.-.+. . +++...|+|+.+...+++...
T Consensus 46 ~~dLes~yyav~glk~Lg~~-~~~~~~~C~~~~~~~~~s--------~-~~~e~lfya~~~~~~L~C~~~---------- 105 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIK-VPDSKAACKFLKKALDES--------S-NDLESLFYAASASKALKCKVS---------- 105 (636)
T ss_pred cccHHHHHHHHhhHHHhCCC-CCChhhHHHHHHHhhccc--------c-chHHHHHHHHHHHhhcCCccc----------
Confidence 34789999999999999973 455889999987764332 1 368899999999999986421
Q ss_pred CCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcCCCCCCCccH
Q 025813 134 IIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGGFGKCPGDLPDL 212 (247)
Q Consensus 134 ~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~ 212 (247)
-.+++.+-+...-++| .++...|+++.++..||.. ...+.++.+.-|...+..| ..+
T Consensus 106 --~~~~~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~ 163 (636)
T PF05817_consen 106 --VSNEVKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSL 163 (636)
T ss_pred --CcHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccH
Confidence 1233444444433332 2455689999999999852 1236777888887777552 234
Q ss_pred HHHHHHHHHHHhcCC
Q 025813 213 YHSFYGYTAFSLLEE 227 (247)
Q Consensus 213 ~~T~~al~~L~ll~~ 227 (247)
..+-+|+.+.+.++.
T Consensus 164 ~s~g~al~~aa~L~~ 178 (636)
T PF05817_consen 164 LSLGYALHAAAQLSK 178 (636)
T ss_pred HHHHHHHHHHHhhcc
Confidence 556677777777764
No 67
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=90.39 E-value=0.71 Score=40.53 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHHhCCc--cccccccCCCCCCCCHHHHHHHHHhcCCCCCccccc-cCC--------CCchhhHHHHHH
Q 025813 104 HGGGTYCAVASLRLMGFI--EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR-ANK--------PSDTCYAFWIGS 172 (247)
Q Consensus 104 ~~~~T~~al~~L~~lg~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~--------~~D~~~~y~a~~ 172 (247)
|=..|...|.-|+.+-.. ++.. +....++++||++.|-++|||-.. |.. .+|-- .+.
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y--------~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDda----m~~ 104 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRY--------REAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDA----MVN 104 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHH--------HHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGH----HHH
T ss_pred cChhHHHHHHHHHHHHHHhCChHH--------HHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHH----HHH
Confidence 335566777766654221 1111 124678999999999999999753 211 13321 334
Q ss_pred HHHHhcC----C---CCC----------CHHHHHHHHHhcCCC
Q 025813 173 VLRMLGG----Y---NLI----------DKEALRGFLLTCQSQ 198 (247)
Q Consensus 173 ~L~lL~~----~---~~~----------~~~~~~~~L~~~Q~~ 198 (247)
++.+|.. . ..+ ..++++++|+++|-.
T Consensus 105 vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~ 147 (289)
T PF09492_consen 105 VLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIR 147 (289)
T ss_dssp HHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4444421 1 112 246899999999963
No 68
>PLN02279 ent-kaur-16-ene synthase
Probab=87.28 E-value=1.7 Score=43.50 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCC----CCC
Q 025813 29 SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGS----ESH 104 (247)
Q Consensus 29 ~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~----~s~ 104 (247)
-+..++-|+++-+.- .... -...|.|...+-.. +....+.-...++||+..|.+||+||..+.. ..-
T Consensus 35 ~~~~~~~i~~~l~~~-e~s~-------s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ 105 (784)
T PLN02279 35 FEGTKERIKKMFDKV-ELSV-------SSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDA 105 (784)
T ss_pred chhHHHHHHHHhccC-cCCC-------chhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHh
Confidence 367788888865432 1221 12345454333332 3323344568899999999999999975321 134
Q ss_pred hhhHHHHHHHHHHhCC
Q 025813 105 GGGTYCAVASLRLMGF 120 (247)
Q Consensus 105 ~~~T~~al~~L~~lg~ 120 (247)
+.+|..||.+|..=+.
T Consensus 106 ll~TlAcvlAL~~w~~ 121 (784)
T PLN02279 106 LSSTLASILALKKWGV 121 (784)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 5678777777766444
No 69
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=2.5 Score=44.92 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHH-------HhcCCCCCCccCCCC--CCCChhhHHHHHHHHHHhCCccccccccC
Q 025813 59 FVYCAAAICFLLEDWSGMDRERAKAYI-------LNCQSYDGGFGLTPG--SESHGGGTYCAVASLRLMGFIEDNVLSKN 129 (247)
Q Consensus 59 ~ty~al~~l~ll~~~~~~~~~~~~~~l-------~~~Q~~dGGFg~~p~--~~s~~~~T~~al~~L~~lg~~~~~~~~~~ 129 (247)
.++.++.=|...+++.+..++++..+| +..+++||.|+..-. .....+.|..++-++......- .++
T Consensus 947 Pni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i--~id-- 1022 (1436)
T KOG1366|consen 947 PNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYI--FID-- 1022 (1436)
T ss_pred chhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCce--Eec--
Confidence 344444445555565555566776666 466789999887644 4455667777777766653320 000
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCccc
Q 025813 130 TSSSIIDLPLLLSWCLQRQAADGGFQ 155 (247)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~Q~~dGgf~ 155 (247)
..-+.++++||.++|.++|.|.
T Consensus 1023 ----~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1023 ----PNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred ----HHHHHHHHHHHHHhhccCceEe
Confidence 1236789999999999999997
No 70
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=81.02 E-value=11 Score=33.73 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCCC-C-CH-------HHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCc
Q 025813 5 SNLASTYCALAILKAVGYNFAN-I-DS-------KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSG 75 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~~~~-~-~~-------~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~ 75 (247)
-+|=.+-.|+.+|.++...... . ++ +++++.|.+.|.+||.|+. +..|=-|+.+|...+....
T Consensus 184 ~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN--------iySTglAmQAL~~~~~~~~ 255 (326)
T PF01122_consen 184 FSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN--------IYSTGLAMQALSVSPSPPS 255 (326)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS--------TTTHHHHHHHHTT-SS-SS
T ss_pred CCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc--------hhhHHHHHHHHhcCCCCCc
Confidence 3454555678888888853221 1 11 3567778888999999973 2446667777766664321
Q ss_pred ---ccHHHHHHHHHhcCCCCCCccC
Q 025813 76 ---MDRERAKAYILNCQSYDGGFGL 97 (247)
Q Consensus 76 ---~~~~~~~~~l~~~Q~~dGGFg~ 97 (247)
.+..++.++|++. -++|.|..
T Consensus 256 ~~~w~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 256 ESEWNCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred chhhHHHHHHHHHHHH-hhcCCCCC
Confidence 3467899999885 46888864
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=57.33 E-value=1.9e+02 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCcc
Q 025813 9 STYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFM 47 (247)
Q Consensus 9 ~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~ 47 (247)
.+++.+.+|..+|. .+ ..++.++|+.+.|.+||.|.
T Consensus 299 D~~~~a~Al~~~G~-~~--~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 299 DASYIATALDRAGY-HD--RVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred cHHHHHHHHHHCCC-HH--HHHHHHHHHHHhhCcCCCcc
Confidence 46778888888884 21 46889999999999999874
No 72
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=30.25 E-value=97 Score=27.40 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCCccCC---CC--CCCChhhHHHHHHHHHH---hCCccccccccCCCCCCCCHHHHHHHHHhc-CC
Q 025813 79 ERAKAYILNCQSYDGGFGLT---PG--SESHGGGTYCAVASLRL---MGFIEDNVLSKNTSSSIIDLPLLLSWCLQR-QA 149 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~---p~--~~s~~~~T~~al~~L~~---lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Q~ 149 (247)
++.++.|.+.|.+||.|... |. ...+...|.....+|.. .|..+++.. ....+++.+.|.+. -+
T Consensus 218 ~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y-------~~~a~~a~~~l~~~~~~ 290 (336)
T PF07470_consen 218 KKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEY-------RPAAEKALEALLSNAID 290 (336)
T ss_dssp HHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHH-------HHHHHHHHHHHHHCEB-
T ss_pred HHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHH-------HHHHHHHHHHHHhCccC
Confidence 46778889999999988764 33 23344444433344422 233321110 22467888999998 67
Q ss_pred CCCc
Q 025813 150 ADGG 153 (247)
Q Consensus 150 ~dGg 153 (247)
+||.
T Consensus 291 ~dG~ 294 (336)
T PF07470_consen 291 PDGK 294 (336)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 7776
No 73
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=30.25 E-value=33 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=24.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCC
Q 025813 173 VLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGD 208 (247)
Q Consensus 173 ~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~ 208 (247)
-|.+||. +. +|++++||++.-+..-||....++
T Consensus 49 FLn~LGt-eI--iEnAVefiLrSMtR~tgF~E~~dk 81 (88)
T PF15144_consen 49 FLNLLGT-EI--IENAVEFILRSMTRSTGFMEFEDK 81 (88)
T ss_pred HHHHhhH-HH--HHHHHHHHHHHhhcccCceecCCC
Confidence 4567763 22 599999999998888898765443
No 74
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=27.19 E-value=72 Score=34.96 Aligned_cols=41 Identities=29% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCCCCccCCCC-CCCChhhHHHHHHHHHHh
Q 025813 78 RERAKAYILNCQSYDGGFGLTPG-SESHGGGTYCAVASLRLM 118 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~-~~s~~~~T~~al~~L~~l 118 (247)
.+.++.-|.+.|..+|+|+.+++ ..++...|.+++-.|...
T Consensus 1201 l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A 1242 (1621)
T COG2373 1201 LQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRA 1242 (1621)
T ss_pred HHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhh
Confidence 46788888999999999999987 778999999998887766
No 75
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=26.12 E-value=5.8e+02 Score=24.82 Aligned_cols=68 Identities=4% Similarity=0.013 Sum_probs=40.2
Q ss_pred HHHHHHHhc-ccC-CCCccccCC----CCCcchHHHHHHHHHHHHhcCCCcc-----------cHHHHHHHHHhcCCCCC
Q 025813 31 SILTSMRNL-QQH-DGSFMPIHF----GAEKDLRFVYCAAAICFLLEDWSGM-----------DRERAKAYILNCQSYDG 93 (247)
Q Consensus 31 ~~i~~l~~~-q~~-dGgf~~~~~----~~~~d~~~ty~al~~l~ll~~~~~~-----------~~~~~~~~l~~~Q~~dG 93 (247)
.+++-|.+. ..| +|++..++. ++.+=+-.|+|....+..++..... .-++..+|++++.++.|
T Consensus 501 ~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~G 580 (616)
T TIGR01577 501 KMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLG 580 (616)
T ss_pred HHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCC
Confidence 446666653 333 455654432 2333445667777777777753211 23567899999988888
Q ss_pred CccCC
Q 025813 94 GFGLT 98 (247)
Q Consensus 94 GFg~~ 98 (247)
=|...
T Consensus 581 ll~Eq 585 (616)
T TIGR01577 581 LLPEQ 585 (616)
T ss_pred CCccc
Confidence 66653
No 76
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.10 E-value=5.5e+02 Score=23.36 Aligned_cols=195 Identities=14% Similarity=0.074 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCC
Q 025813 24 FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSE 102 (247)
Q Consensus 24 ~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~ 102 (247)
++...++++++||++..... ....+| +.+.......|..+|.. +...++..++.|.+.--.||=++-.|+..
T Consensus 129 L~~~~k~~l~~wL~~~~~~~--~~~nNW-----~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~ 201 (361)
T PF10022_consen 129 LDEEEKENLVDWLKQIRGIK--PPDNNW-----LLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQ 201 (361)
T ss_pred CCHHHHHHHHHHHHhcCcCC--Cccchh-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccC
Confidence 34445789999999876543 222233 22333344445555532 44556777788888777886555555433
Q ss_pred CChhhHHHHHHH-----HHHhCCccccccccCCCCCCCCHHHHHHHHHhc---CCCCCccccccCCCCchhhHHHHHHH-
Q 025813 103 SHGGGTYCAVAS-----LRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR---QAADGGFQGRANKPSDTCYAFWIGSV- 173 (247)
Q Consensus 103 s~~~~T~~al~~-----L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~---Q~~dGgf~~~~~~~~D~~~~y~a~~~- 173 (247)
-|= +..+|+.- +.+.+..+++.. ..-++++.+|.... -.+||.+-..-.+ .+|=|-+.+.
T Consensus 202 ~DY-Yns~aih~y~l~~~~~~~~~~~~~~-------~~~~~Ra~~fa~~~~~~f~~dG~~~~~GRS---ltYRfA~~a~~ 270 (361)
T PF10022_consen 202 FDY-YNSWAIHPYLLLYARLMGDEDPERA-------ARYRQRAQRFAEDYERMFSPDGAAPPFGRS---LTYRFAAFAFL 270 (361)
T ss_pred Ccc-hHHHHHHHHHHHHHHHhcccCHHHH-------HHHHHHHHHHHHHHHHHcCCCCCcCCcccc---HHHHHHHHHHH
Confidence 332 22344433 233444432210 12355677776553 3578877521111 2333333333
Q ss_pred --HHHhcC--CCCCCH-------HHHHHHHHhc-CCC--CC----CcCCCC----CCCccHHHHHHHHHHHHhcCCCCCC
Q 025813 174 --LRMLGG--YNLIDK-------EALRGFLLTC-QSQ--YG----GFGKCP----GDLPDLYHSFYGYTAFSLLEEPGLN 231 (247)
Q Consensus 174 --L~lL~~--~~~~~~-------~~~~~~L~~~-Q~~--~G----Gf~~~p----~~~~d~~~T~~al~~L~ll~~~~~~ 231 (247)
+++++. .+.++. .+.++|..+. ... +| ||.+.- ...+....-|||..++..|+-..--
T Consensus 271 ~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp~dh 350 (361)
T PF10022_consen 271 AAAALAGVLPEPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLPADH 350 (361)
T ss_pred HHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCCCCC
Confidence 333443 122232 2233333333 333 22 333321 1234455678999988888877666
Q ss_pred CCCcc
Q 025813 232 PLCAE 236 (247)
Q Consensus 232 ~~~~~ 236 (247)
|++..
T Consensus 351 pFWta 355 (361)
T PF10022_consen 351 PFWTA 355 (361)
T ss_pred ccccC
Confidence 66643
No 77
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=21.68 E-value=97 Score=30.58 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccC
Q 025813 57 LRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 97 (247)
Q Consensus 57 ~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~ 97 (247)
+|-.+.++.+|..+|. ....++..+||.+.|.++|.|-.
T Consensus 297 ~RD~a~~a~AL~~~G~--~~~a~~~~~~l~~~~~~~G~~lq 335 (648)
T TIGR01535 297 PRDLYQVANAFLAAGD--VDSALRSLDYLAKVQQDNGMFPQ 335 (648)
T ss_pred hhhHHHHHHHHHHCCC--HHHHHHHHHHHHHHhccCCCcCc
Confidence 4567777788888884 46788999999999999988743
Done!