Query 025813
Match_columns 247
No_of_seqs 142 out of 1308
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 3.7E-56 1.2E-60 394.7 26.6 226 3-241 91-317 (331)
2 1n4q_B Geranyltransferase type 100.0 2.8E-56 9.7E-61 400.6 24.3 232 1-241 116-348 (377)
3 3dra_B Geranylgeranyltransfera 100.0 2E-54 6.9E-59 388.3 21.2 227 3-241 90-378 (390)
4 2h6f_B Protein farnesyltransfe 100.0 7E-51 2.4E-55 371.9 20.5 227 3-241 146-405 (437)
5 3q7a_B Farnesyltransferase bet 100.0 7.5E-50 2.6E-54 366.9 16.1 223 2-230 135-426 (520)
6 3dss_B Geranylgeranyl transfer 100.0 5.6E-48 1.9E-52 342.2 22.8 216 2-230 42-257 (331)
7 2h6f_B Protein farnesyltransfe 100.0 3E-43 1E-47 321.5 19.3 214 3-228 97-314 (437)
8 3q7a_B Farnesyltransferase bet 100.0 1.7E-41 5.8E-46 311.6 14.8 216 2-228 84-340 (520)
9 1n4q_B Geranyltransferase type 100.0 1.2E-40 4.2E-45 299.1 19.8 215 2-230 43-288 (377)
10 3dra_B Geranylgeranyltransfera 100.0 4.5E-40 1.5E-44 295.3 17.9 225 2-227 27-310 (390)
11 2sqc_A Squalene-hopene cyclase 99.9 5.1E-23 1.8E-27 196.6 19.9 211 5-229 309-570 (631)
12 2sqc_A Squalene-hopene cyclase 99.9 1.3E-22 4.3E-27 193.9 19.1 211 4-225 372-624 (631)
13 1w6k_A Lanosterol synthase; cy 99.9 3.9E-22 1.3E-26 192.9 18.2 221 4-228 383-665 (732)
14 1w6k_A Lanosterol synthase; cy 99.8 2.4E-20 8.1E-25 180.5 18.4 197 4-207 451-692 (732)
15 1qqf_A Protein (complement C3D 99.6 8.1E-15 2.8E-19 126.4 16.1 180 31-224 42-272 (277)
16 2wy7_A Complement C3D fragment 99.6 2.8E-14 9.7E-19 124.9 15.6 183 31-227 58-291 (310)
17 1hzf_A Complement factor C4A; 99.4 1.3E-12 4.3E-17 117.1 12.9 183 30-225 94-359 (367)
18 1qqf_A Protein (complement C3D 99.3 6.9E-12 2.4E-16 107.9 12.2 141 79-227 41-236 (277)
19 2wy7_A Complement C3D fragment 99.3 1.3E-11 4.5E-16 107.9 12.8 142 78-227 56-252 (310)
20 2hr0_B Complement C3 alpha' ch 99.1 6.1E-10 2.1E-14 110.4 12.9 180 31-225 303-534 (915)
21 1hzf_A Complement factor C4A; 99.0 3.6E-09 1.2E-13 94.6 14.0 110 78-195 93-226 (367)
22 2pn5_A TEP1R, thioester-contai 99.0 2.7E-09 9.3E-14 109.5 12.8 178 31-226 876-1102(1325)
23 1r76_A Pectate lyase; A-helica 99.0 2.8E-09 9.5E-14 95.4 10.7 174 29-204 83-335 (408)
24 4acq_A Alpha-2-macroglobulin; 99.0 3.7E-09 1.3E-13 109.1 12.5 118 4-121 951-1092(1451)
25 2pn5_A TEP1R, thioester-contai 98.8 3.5E-08 1.2E-12 101.3 12.9 117 79-202 875-1004(1325)
26 1gxm_A Pectate lyase; mechanis 98.7 2.8E-08 9.5E-13 86.6 6.9 165 32-197 36-251 (332)
27 2hr0_B Complement C3 alpha' ch 98.6 1.6E-07 5.6E-12 93.0 11.2 142 79-228 302-498 (915)
28 4fxk_B Complement C4-A alpha c 98.5 3.9E-06 1.3E-10 81.6 17.9 111 7-118 339-473 (767)
29 2bb6_A TCII, TC II, transcobal 98.5 7.7E-07 2.6E-11 80.0 11.1 124 8-155 137-269 (414)
30 4acq_A Alpha-2-macroglobulin; 98.5 1.1E-06 3.7E-11 90.9 12.8 109 79-195 986-1108(1451)
31 2b39_A C3; thioester, immune d 98.4 5.7E-06 2E-10 86.7 16.9 178 34-225 1053-1281(1661)
32 1r76_A Pectate lyase; A-helica 98.4 1E-07 3.4E-12 85.4 3.0 143 4-155 145-334 (408)
33 2bb6_A TCII, TC II, transcobal 98.2 3E-06 1E-10 76.2 8.6 140 62-230 141-289 (414)
34 3prx_B Cobra venom factor; imm 98.2 2.3E-07 7.7E-12 96.6 0.0 180 34-227 1037-1265(1642)
35 2pmv_A Gastric intrinsic facto 98.0 1.3E-05 4.5E-10 71.6 7.5 101 29-155 132-245 (399)
36 1gxm_A Pectate lyase; mechanis 97.9 5.7E-06 2E-10 72.1 3.8 137 4-149 70-251 (332)
37 3cu7_A Complement C5; Mg domai 97.9 8.1E-05 2.8E-09 78.1 12.4 90 29-119 1042-1156(1676)
38 2pmv_A Gastric intrinsic facto 97.8 4.3E-05 1.5E-09 68.3 7.2 129 76-230 130-265 (399)
39 4fxk_B Complement C4-A alpha c 97.7 0.0012 4E-08 64.1 16.4 69 79-155 371-439 (767)
40 2b39_A C3; thioester, immune d 97.6 0.00064 2.2E-08 71.3 14.3 130 81-228 1051-1201(1661)
41 3cu7_A Complement C5; Mg domai 97.1 0.0023 7.8E-08 67.2 11.0 126 85-228 1056-1201(1676)
42 3s9v_A Abietadiene synthase, c 97.0 0.0065 2.2E-07 59.0 12.8 70 162-232 268-340 (785)
43 3sdr_A Alpha-bisabolene syntha 97.0 0.0083 2.8E-07 58.5 12.8 70 162-232 296-368 (817)
44 3p5p_A Taxadiene synthase; cla 96.9 0.01 3.5E-07 57.5 13.0 90 139-232 222-316 (764)
45 3pya_A ENT-copalyl diphosphate 96.9 0.016 5.4E-07 55.8 13.6 71 162-233 243-316 (727)
46 3prx_B Cobra venom factor; imm 96.4 0.00055 1.9E-08 71.5 0.0 70 80-156 1034-1104(1642)
47 3sdr_A Alpha-bisabolene syntha 95.4 0.032 1.1E-06 54.4 7.7 101 30-147 57-162 (817)
48 3s9v_A Abietadiene synthase, c 94.4 0.042 1.4E-06 53.4 5.4 98 30-147 34-135 (785)
49 3p5p_A Taxadiene synthase; cla 94.1 0.064 2.2E-06 52.0 6.0 98 30-147 11-114 (764)
50 3pya_A ENT-copalyl diphosphate 90.8 0.29 1E-05 47.0 5.7 96 29-147 11-111 (727)
51 3ren_A Glycosyl hydrolase, fam 60.7 66 0.0023 27.9 10.0 97 15-116 239-346 (350)
52 1wgn_A UBAP1, ubiquitin associ 52.0 23 0.0008 22.7 4.2 28 11-43 34-61 (63)
53 3pmm_A Putative cytoplasmic pr 35.8 1.1E+02 0.0038 26.6 7.5 90 8-97 237-341 (382)
54 3k11_A Putative glycosyl hydro 34.4 1.5E+02 0.005 26.6 8.2 86 8-95 270-371 (445)
55 3pmm_A Putative cytoplasmic pr 34.4 71 0.0024 27.8 6.0 70 79-156 266-341 (382)
56 4ae4_A Ubiquitin-associated pr 33.4 84 0.0029 22.6 5.3 71 13-88 25-114 (118)
57 2dna_A Unnamed protein product 32.6 63 0.0022 20.9 4.0 17 28-44 47-63 (67)
58 1vej_A Riken cDNA 4931431F19; 31.8 67 0.0023 21.2 4.2 26 14-44 48-73 (74)
59 2lbf_A 60S acidic ribosomal pr 28.9 32 0.0011 22.4 2.1 35 1-39 1-35 (69)
60 3k11_A Putative glycosyl hydro 28.2 1.7E+02 0.006 26.1 7.6 70 79-155 297-372 (445)
61 2dah_A Ubiquilin-3; UBA domain 25.5 1E+02 0.0036 18.8 4.0 25 13-42 27-51 (54)
62 1vg5_A RSGI RUH-014, rhomboid 24.1 95 0.0033 20.4 3.8 26 13-43 46-71 (73)
63 1wji_A Tudor domain containing 21.0 1.2E+02 0.0041 19.1 3.7 26 13-43 26-51 (63)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.7e-56 Score=394.74 Aligned_cols=226 Identities=36% Similarity=0.714 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAK 82 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~ 82 (247)
+.+|+.+||+|+++|.+++ .++.++++++++||+++|++||+|...++ +++|++.||||+.+|.+++.++.+++++++
T Consensus 91 ~~~~l~~Ty~Al~~L~~l~-~~~~id~~k~~~fL~~~Q~~DGsf~~~~~-ge~d~~~ty~Al~~L~llg~~~~~~~~k~v 168 (331)
T 3dss_B 91 HDPHLLYTLSAVQILTLYD-SIHVINVDKVVAYVQSLQKEDGSFAGDIW-GEIDTRFSFCAVATLALLGKLDAINVEKAI 168 (331)
T ss_dssp SCBCHHHHHHHHHHHHHTT-CGGGSCHHHHHHHHHHTBCTTSCBBSSTT-CCBCHHHHHHHHHHHHHHTCGGGSCHHHHH
T ss_pred CCccHHHHHHHHHHHHHcC-CccHHHHHHHHHHHhccCCCCCCEecccC-CCCchHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5789999999999999998 47778999999999999999999987665 789999999999999999987778999999
Q ss_pred HHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCC
Q 025813 83 AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 162 (247)
Q Consensus 83 ~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~ 162 (247)
+||++||++||||+..|+.++|+.+||||+++|.++|..+ .++++++++||.++|.+||||+++|++++
T Consensus 169 ~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~-----------~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~ 237 (331)
T 3dss_B 169 EFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH-----------QVNSDLLGWWLCERQLPSGGLNGRPEKLP 237 (331)
T ss_dssp HHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG-----------GSCHHHHHHHHHTTBCTTSCBCSSTTCCC
T ss_pred HHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccc-----------hhhHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999875 46899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC-CCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 025813 163 DTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQY-GGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTE 241 (247)
Q Consensus 163 D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~~~~ 241 (247)
|+||+||++++|++|++.+.++.+++++||++||+.+ |||+++|+++||++||||++++|+++++.++.++||.+|||+
T Consensus 238 D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~~~p~~~~~~ 317 (331)
T 3dss_B 238 DVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317 (331)
T ss_dssp CHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCTTTSSBH
T ss_pred cchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCccccCCH
Confidence 9999999999999999888899999999999999987 999999999999999999999999999999999999999996
No 2
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2.8e-56 Score=400.59 Aligned_cols=232 Identities=41% Similarity=0.824 Sum_probs=215.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 1 MHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
|.|+||+.+||+||++|.+||..++.++++++++||+++|+|||+|...+..++.|+++||+|+.++.+++..+.+++++
T Consensus 116 ~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~k 195 (377)
T 1n4q_B 116 PYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195 (377)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHH
Confidence 45789999999999999999987888999999999999999999998753448999999999999999999877889999
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK 160 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~ 160 (247)
+++||++||++|||||..|+.|||..+||||+++|.+++..+... ...+++++++||.++| +|||+|||+|
T Consensus 196 a~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~-------~~~~~~rli~wL~~rQ--~gGf~GR~nK 266 (377)
T 1n4q_B 196 AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF-------SEKELNRIKRWCIMRQ--QNGYHGRPNK 266 (377)
T ss_dssp HHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS-------CHHHHHHHHHHHHTTB--SSSBCSSTTS
T ss_pred HHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCccccc-------chhhHHHHHHHHHhcC--CCCcCCCCCc
Confidence 999999999999999999999999999999999999999865210 0126899999999999 8999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 025813 161 PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGM 239 (247)
Q Consensus 161 ~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~~~~~~~~~~ 239 (247)
.+|+||+||++++|.+|+...++|.+++.+||++||+. +|||+++|++.||++|||+++++|+++++.++.++||.+||
T Consensus 267 ~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~l~~i~p~~~i 346 (377)
T 1n4q_B 267 PVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNV 346 (377)
T ss_dssp CCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTTCCCEETTTTE
T ss_pred chhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCCcccC
Confidence 99999999999999999988889999999999999998 99999999999999999999999999999999999999999
Q ss_pred cc
Q 025813 240 TE 241 (247)
Q Consensus 240 ~~ 241 (247)
|.
T Consensus 347 ~~ 348 (377)
T 1n4q_B 347 ST 348 (377)
T ss_dssp EH
T ss_pred CH
Confidence 95
No 3
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2e-54 Score=388.26 Aligned_cols=227 Identities=34% Similarity=0.519 Sum_probs=208.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhccc---C-CCCccccC----------CCCCcchHHHHHHHHHH
Q 025813 3 NGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQ---H-DGSFMPIH----------FGAEKDLRFVYCAAAIC 67 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q~---~-dGgf~~~~----------~~~~~d~~~ty~al~~l 67 (247)
+.||++.||+|+++|.+||.+ ++.+||+++++||+++|+ | ||+|...+ .+++.|+|++|||++++
T Consensus 90 ~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~ 169 (390)
T 3dra_B 90 DCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIR 169 (390)
T ss_dssp SCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHH
Confidence 689999999999999999976 477899999999999999 7 89998543 14789999999999999
Q ss_pred HHhcCCC-------------cccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCC
Q 025813 68 FLLEDWS-------------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSI 134 (247)
Q Consensus 68 ~ll~~~~-------------~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~ 134 (247)
.+|+.+. .++++++++||++||+.||||+..|+.|||..+|||||++|.++++..
T Consensus 170 ~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~------------ 237 (390)
T 3dra_B 170 HLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL------------ 237 (390)
T ss_dssp HHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG------------
T ss_pred HHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc------------
Confidence 9999765 578999999999999999999999999999999999999999999862
Q ss_pred CCHHHHHHHHHhcCC----------------------------CCCccccccCCCCchhhHHHHHHHHHHhcC--CCCCC
Q 025813 135 IDLPLLLSWCLQRQA----------------------------ADGGFQGRANKPSDTCYAFWIGSVLRMLGG--YNLID 184 (247)
Q Consensus 135 ~~~~~~~~~l~~~Q~----------------------------~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~--~~~~~ 184 (247)
++++++++||.++|. ++|||+||++|.+|+||+||++++|.+|+. ..++|
T Consensus 238 ~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d 317 (390)
T 3dra_B 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVD 317 (390)
T ss_dssp GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSC
T ss_pred ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccC
Confidence 367899999999997 479999999999999999999999999994 46789
Q ss_pred HHHHHHHHHhc-CCC-CCCcCCCCCCCccHHHHHHHHHHHHhcCC--CCCCCCCccccccc
Q 025813 185 KEALRGFLLTC-QSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEE--PGLNPLCAELGMTE 241 (247)
Q Consensus 185 ~~~~~~~L~~~-Q~~-~GGf~~~p~~~~d~~~T~~al~~L~ll~~--~~~~~~~~~~~~~~ 241 (247)
.+++.+||+.| |+. .|||+++|++.||++|||+++++|+++++ .++.+|||.+|||+
T Consensus 318 ~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~ 378 (390)
T 3dra_B 318 LNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITK 378 (390)
T ss_dssp HHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEH
T ss_pred HHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCH
Confidence 99999999997 565 89999999999999999999999999987 79999999999996
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=7e-51 Score=371.87 Aligned_cols=227 Identities=34% Similarity=0.613 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHH
Q 025813 3 NGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRER 80 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 80 (247)
+.+++..||+|+++|.++|.. .+.++++++++||+++|++||||...++ +++|++.||+|+.++.+++..+...+++
T Consensus 146 ~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~-Ge~d~~~ty~A~~~L~llg~~~~~~v~k 224 (437)
T 2h6f_B 146 QYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEG 224 (437)
T ss_dssp CCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTT-CCBSHHHHHHHHHHHHHTTCCCTTTTTT
T ss_pred CCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCC-CCccchhHHHHHHHHHHhCCCChHHHHH
Confidence 468999999999999999964 4668999999999999999999996555 7899999999999999999877778899
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCC-CCCccccccC
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGGFQGRAN 159 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~-~dGgf~~~~~ 159 (247)
+++||++||++||||+..|+.++|+.+|||||++|.++|..+ .++++++++||.++|. ++|||++||+
T Consensus 225 ~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~-----------~~~~~rl~~wL~~rQ~~~~GGf~gRp~ 293 (437)
T 2h6f_B 225 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER-----------SLNLKSLLQWVTSRQMRFEGGFQGRCN 293 (437)
T ss_dssp HHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGG-----------GSCHHHHHHHHHHTBCTTTCSBBSSTT
T ss_pred HHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCC-----------cccHHHHHHHHHhcCCCCCCCccCCCC
Confidence 999999999999999999999999999999999999999875 5689999999999998 8999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCC-------------CCCCHHHHHHHHHh-cCCCCCCcCCCCCCCccHHHHHHHHHHHHhc
Q 025813 160 KPSDTCYAFWIGSVLRMLGGY-------------NLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLL 225 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~-------------~~~~~~~~~~~L~~-~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll 225 (247)
|.+|+||+||++++|.+|+.. .++|.+++.+||+. ||+.+|||+++|++.+|++||||++++|+++
T Consensus 294 K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~ 373 (437)
T 2h6f_B 294 KLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIA 373 (437)
T ss_dssp SCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999742 25889999999987 8999999999999999999999999999999
Q ss_pred CC----------------CCCCCCCccccccc
Q 025813 226 EE----------------PGLNPLCAELGMTE 241 (247)
Q Consensus 226 ~~----------------~~~~~~~~~~~~~~ 241 (247)
++ ..+.++||.+|||.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~ 405 (437)
T 2h6f_B 374 QHFGSGAMLHDVVLGVPENALQPTHPVYNIGP 405 (437)
T ss_dssp HEEEETTEEEECCCSSGGGCCCCCCTTTSSCH
T ss_pred ccccccccccccccCCcccCccccCCcccCCH
Confidence 85 47899999999995
No 5
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=7.5e-50 Score=366.86 Aligned_cols=223 Identities=28% Similarity=0.500 Sum_probs=198.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC-----CCCCC--HHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCC
Q 025813 2 HNGSNLASTYCALAILKAVGYN-----FANID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS 74 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~-----~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~ 74 (247)
.+.+||.+||+||++|.+|+.. ++.+| ++++++||+++|++||+|....+ ++.|+++||+|+.++.+|+..+
T Consensus 135 ~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~w-Ge~Dir~TY~Al~~L~lLg~~~ 213 (520)
T 3q7a_B 135 SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEG-GEVDVRGTYCLLVVATLLDIIT 213 (520)
T ss_dssp TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTT-CCBCHHHHHHHHHHHHHHTCCC
T ss_pred CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCC-CCchHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999964 34567 89999999999999999986555 7899999999999999999877
Q ss_pred cccHHHHHHHHHhcCCCCCCccC-----------------------CCCCCCChhhHHHHHHHHHHhCCccccccccCCC
Q 025813 75 GMDRERAKAYILNCQSYDGGFGL-----------------------TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTS 131 (247)
Q Consensus 75 ~~~~~~~~~~l~~~Q~~dGGFg~-----------------------~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~ 131 (247)
..+++++++||++||+.|||||. .|+.|+|..+|||||++|.+++..+... .
T Consensus 214 ~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~-----~ 288 (520)
T 3q7a_B 214 PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPS-----F 288 (520)
T ss_dssp HHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTT-----C
T ss_pred hHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccc-----c
Confidence 78899999999999999999999 6799999999999999999999863100 0
Q ss_pred CCCCCHHHHHHHHHhcCC---CCCccccccCCCCchhhHHHHHHHHHHhcCC----------------------------
Q 025813 132 SSIIDLPLLLSWCLQRQA---ADGGFQGRANKPSDTCYAFWIGSVLRMLGGY---------------------------- 180 (247)
Q Consensus 132 ~~~~~~~~~~~~l~~~Q~---~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~---------------------------- 180 (247)
...+|++++++||.++|. ++|||+||++|.+|+||+||++++|.||+..
T Consensus 289 ~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 368 (520)
T 3q7a_B 289 PLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDV 368 (520)
T ss_dssp SCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC-------------------
T ss_pred ccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 125789999999999996 4699999999999999999999999998752
Q ss_pred ----CCCCHHHHHHHHH-hcCCCC---CCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 181 ----NLIDKEALRGFLL-TCQSQY---GGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 181 ----~~~~~~~~~~~L~-~~Q~~~---GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
.++|.+++.+||+ .||... |||+++|++.+|++||||++++|+++++...
T Consensus 369 ~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~ 426 (520)
T 3q7a_B 369 PPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMS 426 (520)
T ss_dssp --CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEE
T ss_pred cccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC
Confidence 3578999999998 699987 9999999999999999999999999998754
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=5.6e-48 Score=342.21 Aligned_cols=216 Identities=21% Similarity=0.349 Sum_probs=203.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERA 81 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~ 81 (247)
+|.++++.|||++.+|.+||. ++.++++++++||+++|++||||...+ +..+++..||+|+.+|.+++..+.++++++
T Consensus 42 ~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~-g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~ 119 (331)
T 3dss_B 42 SEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASI-GHDPHLLYTLSAVQILTLYDSIHVINVDKV 119 (331)
T ss_dssp GGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSST-TSCBCHHHHHHHHHHHHHTTCGGGSCHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCC-CCCccHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 577899999999999999994 666799999999999999999999765 578999999999999999997777899999
Q ss_pred HHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCC
Q 025813 82 KAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP 161 (247)
Q Consensus 82 ~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~ 161 (247)
++||+++|++||||++.+..++|+..||||+++|.++|..+ .++++++++||+++|++||||.++|+.+
T Consensus 120 ~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~-----------~~~~~k~v~~L~s~Q~~dGGfg~~pg~e 188 (331)
T 3dss_B 120 VAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLD-----------AINVEKAIEFVLSCMNFDGGFGCRPGSE 188 (331)
T ss_dssp HHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGG-----------GSCHHHHHHHHHTTBCTTSCBCSSTTCC
T ss_pred HHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHhCcCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999864 4689999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCCCC
Q 025813 162 SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 162 ~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~~~ 230 (247)
+|+++|||++++|.+++..+.++.+++++||.++|+++|||+++|++++|++||||++++|.++++.+.
T Consensus 189 sh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~ 257 (331)
T 3dss_B 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257 (331)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGG
T ss_pred CcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcch
Confidence 999999999999999998877889999999999999999999999999999999999999999998653
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=3e-43 Score=321.49 Aligned_cols=214 Identities=21% Similarity=0.223 Sum_probs=195.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHH
Q 025813 3 NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRE 79 (247)
Q Consensus 3 ~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~ 79 (247)
|..+...+||++.+|.+||...+..+++++++||.++|++||||...++ +.+++..||+|+.+|.++|.. +.++++
T Consensus 97 D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~-~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~ 175 (437)
T 2h6f_B 97 DASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPG-QYPHLAPTYAAVNALCIIGTEEAYDIINRE 175 (437)
T ss_dssp TTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTT-CCBCHHHHHHHHHHHHHHCCHHHHTTSCHH
T ss_pred cCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccC-CCcchhHHHHHHHHHHHhCCcccccchHHH
Confidence 3456778999999999999654445678999999999999999998776 778999999999999999853 567899
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccC
Q 025813 80 RAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN 159 (247)
Q Consensus 80 ~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~ 159 (247)
++++||+++|++||||+..++.++|+..||+|+++|.++|..+ ...++++++||+++|++||||+++|+
T Consensus 176 kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~-----------~~~v~k~~~~L~s~Q~~DGGwg~~pg 244 (437)
T 2h6f_B 176 KLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT-----------PDLFEGTAEWIARCQNWEGGIGGVPG 244 (437)
T ss_dssp HHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCC-----------TTTTTTHHHHHHHHBCTTSSBCSSTT
T ss_pred HHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCC-----------hHHHHHHHHHHHHccCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999754 34577899999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-CCCCcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 160 KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 160 ~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
+++|+++||||+++|.++|..+.++++++++||.+||. ++|||.+||++.+|+|||||++++|.++++.
T Consensus 245 ~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~ 314 (437)
T 2h6f_B 245 MEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314 (437)
T ss_dssp SCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhh
Confidence 99999999999999999998877899999999999998 7999999999999999999999999999753
No 8
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.7e-41 Score=311.55 Aligned_cols=216 Identities=19% Similarity=0.210 Sum_probs=194.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCC-CCCcchHHHHHHHHHHHHhcCC------C
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHF-GAEKDLRFVYCAAAICFLLEDW------S 74 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~-~~~~d~~~ty~al~~l~ll~~~------~ 74 (247)
.|.++++..||++.+|.+||..++..+++++++||.++|++||||...+. +..+++..||+|+.+|.+++.. +
T Consensus 84 ~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~ 163 (520)
T 3q7a_B 84 LDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWK 163 (520)
T ss_dssp GGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHH
T ss_pred cccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhh
Confidence 36788999999999999999666555788999999999999999987651 3788999999999999999863 2
Q ss_pred ccc--HHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCC
Q 025813 75 GMD--RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 152 (247)
Q Consensus 75 ~~~--~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dG 152 (247)
.++ ++++++||+++|++||+|.+.++.+.|++.||||+.+|.++|..+ .++++++++||+++|+.||
T Consensus 164 ~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~-----------~~~v~kav~fI~scQn~DG 232 (520)
T 3q7a_B 164 DLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIIT-----------PELLHNVDKFVSACQTYEG 232 (520)
T ss_dssp HHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCC-----------HHHHTTHHHHHHTTBCTTS
T ss_pred hhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHHhcCCCC
Confidence 356 889999999999999999998889999999999999999999854 3467889999999999999
Q ss_pred cccc-----------------------ccCCCCchhhHHHHHHHHHHhcCC------CCCCHHHHHHHHHhcCC---CCC
Q 025813 153 GFQG-----------------------RANKPSDTCYAFWIGSVLRMLGGY------NLIDKEALRGFLLTCQS---QYG 200 (247)
Q Consensus 153 gf~~-----------------------~~~~~~D~~~~y~a~~~L~lL~~~------~~~~~~~~~~~L~~~Q~---~~G 200 (247)
||+. .|+.|+|..||||++++|.+|+.. +.++.+++++||..+|. ++|
T Consensus 233 GfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~G 312 (520)
T 3q7a_B 233 GFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGG 312 (520)
T ss_dssp SBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTT
T ss_pred CccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCC
Confidence 9998 679999999999999999999985 36789999999999997 469
Q ss_pred CcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 201 GFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 201 Gf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
||++||+|.+|.||+||..++|.+++..
T Consensus 313 GF~GR~NKlvD~CYSfWvggsl~iL~~~ 340 (520)
T 3q7a_B 313 GFRGRTNKLVDGCYSWWVGGGAPVAEEL 340 (520)
T ss_dssp CBBSSTTSCBCTTHHHHTGGGHHHHHHH
T ss_pred cccCCCCCCCchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 9
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.2e-40 Score=299.10 Aligned_cols=215 Identities=20% Similarity=0.240 Sum_probs=192.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhccc---------CCCCccccCCC----------------CCcc
Q 025813 2 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQ---------HDGSFMPIHFG----------------AEKD 56 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~---------~dGgf~~~~~~----------------~~~d 56 (247)
.|.++++.+||++.+|.+||. ++.++++++++||.++|+ ++|||...+.. ..++
T Consensus 43 ~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~ 121 (377)
T 1n4q_B 43 LETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGH 121 (377)
T ss_dssp GGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCC
T ss_pred cccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCC
Confidence 467899999999999999994 455679999999999999 68999875421 1378
Q ss_pred hHHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCccCC-CCCCCChhhHHHHHHHHHHhCCccccccccCCCCCC
Q 025813 57 LRFVYCAAAICFLLED-WSGMDRERAKAYILNCQSYDGGFGLT-PGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSI 134 (247)
Q Consensus 57 ~~~ty~al~~l~ll~~-~~~~~~~~~~~~l~~~Q~~dGGFg~~-p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~ 134 (247)
+..||.|+.+|.+++. .+.++++++++||+++|++||+|.+. .+.+.|++.||+|+++|.++|..+ .
T Consensus 122 v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~-----------~ 190 (377)
T 1n4q_B 122 IAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS-----------G 190 (377)
T ss_dssp HHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG-----------G
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC-----------h
Confidence 9999999999999984 46688999999999999999999987 578999999999999999999854 5
Q ss_pred CCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCC----CHHHHHHHHHhcCCCCCCcCCCCCCCc
Q 025813 135 IDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLI----DKEALRGFLLTCQSQYGGFGKCPGDLP 210 (247)
Q Consensus 135 ~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~----~~~~~~~~L~~~Q~~~GGf~~~p~~~~ 210 (247)
++++++++||+++|++||||+..|+.+++..+||||+++|.+|+..+.. +++++++||.++| +|||.+||+|.+
T Consensus 191 ~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~ 268 (377)
T 1n4q_B 191 MDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPV 268 (377)
T ss_dssp SCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcch
Confidence 6899999999999999999999999999999999999999999975433 6789999999999 999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 025813 211 DLYHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 211 d~~~T~~al~~L~ll~~~~~ 230 (247)
|+||+||.+++|.++++...
T Consensus 269 D~CYSfWv~~~l~iL~~~~~ 288 (377)
T 1n4q_B 269 DTCYSFWVGATLKLLKIFQY 288 (377)
T ss_dssp CTTHHHHHHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998653
No 10
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=4.5e-40 Score=295.26 Aligned_cols=225 Identities=22% Similarity=0.258 Sum_probs=190.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHhcccCC----CCccccC----CC---CCcchHHHHHHHHHHHH
Q 025813 2 HNGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQHD----GSFMPIH----FG---AEKDLRFVYCAAAICFL 69 (247)
Q Consensus 2 ~~~~~l~~Ty~a~~~L~~lg~~-~~~~~~~~~i~~l~~~q~~d----Ggf~~~~----~~---~~~d~~~ty~al~~l~l 69 (247)
.|.++++.+||++.+|.+||.. +...++++.++||.++|.++ |||...+ .+ ..+++..||+|+.+|.+
T Consensus 27 ~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~i 106 (390)
T 3dra_B 27 EDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLI 106 (390)
T ss_dssp GTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHH
Confidence 4678999999999999999963 23346789999999998764 8998764 22 36899999999999999
Q ss_pred hcCC--CcccHHHHHHHHHhcCC---C-CCCccCCC-----------CCCCChhhHHHHHHHHHHhCCcccccccc--CC
Q 025813 70 LEDW--SGMDRERAKAYILNCQS---Y-DGGFGLTP-----------GSESHGGGTYCAVASLRLMGFIEDNVLSK--NT 130 (247)
Q Consensus 70 l~~~--~~~~~~~~~~~l~~~Q~---~-dGGFg~~p-----------~~~s~~~~T~~al~~L~~lg~~~~~~~~~--~~ 130 (247)
|+.. +.++++++.+||.+||+ + ||||+..+ +.+.|++.+|||++++.+++...+....+ ..
T Consensus 107 lg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~ 186 (390)
T 3dra_B 107 LKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDS 186 (390)
T ss_dssp TTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-----------
T ss_pred hCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCccccccccccc
Confidence 9974 56899999999999999 7 89999654 67999999999999999998764100000 00
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-------------
Q 025813 131 SSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS------------- 197 (247)
Q Consensus 131 ~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~------------- 197 (247)
-...+|++++++||.+||+.||||+..|+.|+|..|||||+++|++|+.. ..+.+++++||.++|.
T Consensus 187 ~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~ 265 (390)
T 3dra_B 187 NETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNG 265 (390)
T ss_dssp --CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC-----
T ss_pred ccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCcccccccccccccc
Confidence 00147899999999999999999999999999999999999999999976 4678999999999997
Q ss_pred ---------------CCCCcCCCCCCCccHHHHHHHHHHHHhcCC
Q 025813 198 ---------------QYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 227 (247)
Q Consensus 198 ---------------~~GGf~~~p~~~~d~~~T~~al~~L~ll~~ 227 (247)
.+|||.+||+|.+|.||+||++++|.+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~ 310 (390)
T 3dra_B 266 DGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDV 310 (390)
T ss_dssp -------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCG
T ss_pred ccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcc
Confidence 469999999999999999999999999996
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.90 E-value=5.1e-23 Score=196.56 Aligned_cols=211 Identities=16% Similarity=0.076 Sum_probs=159.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCC-C------------CccccC-CCCCcchHHHHHHHHHHHHh
Q 025813 5 SNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHD-G------------SFMPIH-FGAEKDLRFVYCAAAICFLL 70 (247)
Q Consensus 5 ~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~d-G------------gf~~~~-~~~~~d~~~ty~al~~l~ll 70 (247)
+.++.|.+++++|...|...+.+..+++++||++.|..+ | ||.... ..+.++++.|.+++.+|..+
T Consensus 309 s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~ 388 (631)
T 2sqc_A 309 SPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTL 388 (631)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHc
Confidence 568899999999999996444445789999999988643 3 332111 11347899999999999988
Q ss_pred cCCC----cccHHHHHHHHHhcCCCCCCccCCCC-------------------CCCChhhHHHHHHHHHHhCCccccccc
Q 025813 71 EDWS----GMDRERAKAYILNCQSYDGGFGLTPG-------------------SESHGGGTYCAVASLRLMGFIEDNVLS 127 (247)
Q Consensus 71 ~~~~----~~~~~~~~~~l~~~Q~~dGGFg~~p~-------------------~~s~~~~T~~al~~L~~lg~~~~~~~~ 127 (247)
+... ....+++++||+++|++||||+..+. +.+++..|..++.+|..++....
T Consensus 389 ~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~---- 464 (631)
T 2sqc_A 389 RLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDA---- 464 (631)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTT----
T ss_pred CCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCcc----
Confidence 8632 22467999999999999999976422 12677889999999998875321
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHH---HhcCCC-CCCHHHHHHHHHhcCCCCCCcC
Q 025813 128 KNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLR---MLGGYN-LIDKEALRGFLLTCQSQYGGFG 203 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~---lL~~~~-~~~~~~~~~~L~~~Q~~~GGf~ 203 (247)
...++++++||.++|++||||.++++ ++++|+...++. .++... ...++++++||+++|+.||||+
T Consensus 465 ------~~~i~rai~~L~~~Q~~DGsw~g~wg----~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg 534 (631)
T 2sqc_A 465 ------WKVIRRAVEYLKREQKPDGSWFGRWG----VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWG 534 (631)
T ss_dssp ------SHHHHHHHHHHHHHCCTTSCCCCSSB----SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCC
T ss_pred ------HHHHHHHHHHHHHhcCCCCCCCCCCC----CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcC
Confidence 34578999999999999999987765 556676555544 444321 2346899999999999999998
Q ss_pred CCC----------CCCccHHHHHHHHHHHHhcCCCC
Q 025813 204 KCP----------GDLPDLYHSFYGYTAFSLLEEPG 229 (247)
Q Consensus 204 ~~p----------~~~~d~~~T~~al~~L~ll~~~~ 229 (247)
..+ ...+|+.+|+|++.+|..++..+
T Consensus 535 ~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~ 570 (631)
T 2sqc_A 535 EDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAE 570 (631)
T ss_dssp CCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSS
T ss_pred CccccccccccCCCCCCCHHHHHHHHHHHHHcCCCC
Confidence 653 35689999999999999998763
No 12
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.90 E-value=1.3e-22 Score=193.87 Aligned_cols=211 Identities=16% Similarity=0.083 Sum_probs=161.3
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHhcccCCCCccccCCC------------------CCcchHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHDGSFMPIHFG------------------AEKDLRFVYC 62 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~------------------~~~d~~~ty~ 62 (247)
.|++.+|.+++.+|..++.... ....+++++||.++|++||||...... +.+++..|..
T Consensus 372 ~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~ 451 (631)
T 2sqc_A 372 YPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAH 451 (631)
T ss_dssp CCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHH
Confidence 3789999999999999885211 112468999999999999999653210 1257778888
Q ss_pred HHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHH
Q 025813 63 AAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL 141 (247)
Q Consensus 63 al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 141 (247)
++.+|..++.. ....++++++||+++|++||||.+..+ ..+...|..++.+|..+|... ....+++++
T Consensus 452 vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~----------~~~~i~rav 520 (631)
T 2sqc_A 452 VLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDT----------REPYIQKAL 520 (631)
T ss_dssp HHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCT----------TSHHHHHHH
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcc----------cHHHHHHHH
Confidence 88888888753 234678999999999999999966543 345666777888888887642 134688999
Q ss_pred HHHHhcCCCCCcccccc----------CCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCC--
Q 025813 142 SWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDL-- 209 (247)
Q Consensus 142 ~~l~~~Q~~dGgf~~~~----------~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~-- 209 (247)
+||+++|++||||...+ .+++|+..|+|++.+|..++......++++++||.++|+++|||...+...
T Consensus 521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~g 600 (631)
T 2sqc_A 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTG 600 (631)
T ss_dssp HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEE
T ss_pred HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCccccc
Confidence 99999999999996432 356899999999999999887544457899999999999999999876431
Q ss_pred --------ccHHHHHHHHHHHHhc
Q 025813 210 --------PDLYHSFYGYTAFSLL 225 (247)
Q Consensus 210 --------~d~~~T~~al~~L~ll 225 (247)
-+.+.+++++-||+..
T Consensus 601 f~~~~yl~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 601 FPGDFYLGYTMYRHVFPTLALGRY 624 (631)
T ss_dssp ETTTEEEEETTHHHHHHHHHHHHH
T ss_pred ccccceeeccchhhHHHHHHHHHH
Confidence 1356677888887654
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.89 E-value=3.9e-22 Score=192.95 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=163.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHhcccCC--------------CCccccCC-CCCcchHHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHD--------------GSFMPIHF-GAEKDLRFVYCAAA 65 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~---~~~~~~~i~~l~~~q~~d--------------Ggf~~~~~-~~~~d~~~ty~al~ 65 (247)
.+.+..|-+++++|.-.|...+ ....+++++||.++|..+ |||..... .+.+++..|..++.
T Consensus 383 gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 3679999999999998885221 112479999999999766 88864322 13578899999998
Q ss_pred HHHHhcCC--------CcccHHHHHHHHHhcCCCCCCccCCCC---------------------CCCChhhHHHHHHHHH
Q 025813 66 ICFLLEDW--------SGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLR 116 (247)
Q Consensus 66 ~l~ll~~~--------~~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------------~~s~~~~T~~al~~L~ 116 (247)
+|..+... ....++++++||+++|++||||+.... ..+++..|..++.+|.
T Consensus 463 aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~ 542 (732)
T 1w6k_A 463 AVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALK 542 (732)
T ss_dssp HHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHH
Confidence 88887421 223458999999999999999974321 2246778999999998
Q ss_pred HhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCC-----CCHHHHHHH
Q 025813 117 LMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL-----IDKEALRGF 191 (247)
Q Consensus 117 ~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~-----~~~~~~~~~ 191 (247)
.++...+....+. ....++++++||+++|++||||.++++ ..++..+++++.+|.++|.... ..++++++|
T Consensus 543 ~~~~~~~~~~~~~---~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~ 618 (732)
T 1w6k_A 543 YFHKRFPEHRAAE---IRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDF 618 (732)
T ss_dssp HHHHHCTTSSHHH---HHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHH
T ss_pred Hhccccccccchh---hHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHH
Confidence 8864211100000 013478999999999999999998776 2455567788888988886422 247899999
Q ss_pred HHhcCCCCCCcCCC----------CCCCccHHHHHHHHHHHHhcCCC
Q 025813 192 LLTCQSQYGGFGKC----------PGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 192 L~~~Q~~~GGf~~~----------p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
|+++|+.||||+.. ++..+++..|+||+.+|..+++.
T Consensus 619 Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~ 665 (732)
T 1w6k_A 619 LLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP 665 (732)
T ss_dssp HHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999874 35678999999999999888764
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.85 E-value=2.4e-20 Score=180.47 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=146.9
Q ss_pred CCcHHHHHHHHHHHHHhCCCC----CCCC---HHHHHHHHHhcccCCCCccccCC----------------C----CCcc
Q 025813 4 GSNLASTYCALAILKAVGYNF----ANID---SKSILTSMRNLQQHDGSFMPIHF----------------G----AEKD 56 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~----~~~~---~~~~i~~l~~~q~~dGgf~~~~~----------------~----~~~d 56 (247)
.|++.+|..++.+|..++... ..++ .+++++||.++|++||||..+.. + ..+.
T Consensus 451 ~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~ 530 (732)
T 1w6k_A 451 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY 530 (732)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCB
T ss_pred CCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCc
Confidence 478999999999999885311 1123 37899999999999999964321 0 1134
Q ss_pred hHHHHHHHHHHHHhcCC--C------cccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCcccccccc
Q 025813 57 LRFVYCAAAICFLLEDW--S------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSK 128 (247)
Q Consensus 57 ~~~ty~al~~l~ll~~~--~------~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~ 128 (247)
+..|..++.+|..++.. . ...++++++||+++|++||||++..+ ..+...|++++.+|..+|....+.
T Consensus 531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~--- 606 (732)
T 1w6k_A 531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDG--- 606 (732)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTT---
T ss_pred chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCccccc---
Confidence 55677777878777531 1 23578999999999999999987654 345567889999999998753110
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCccccc----------cCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 025813 129 NTSSSIIDLPLLLSWCLQRQAADGGFQGR----------ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ 198 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~----------~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~ 198 (247)
.....++++++||+++|++||||... +++.+|+..|.||+.+|..++..+...++++++||.++|++
T Consensus 607 ---~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~ 683 (732)
T 1w6k_A 607 ---TACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLP 683 (732)
T ss_dssp ---BCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCT
T ss_pred ---chhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCC
Confidence 00135789999999999999999853 24567899999999888777754434578899999999999
Q ss_pred CCCcCCCCC
Q 025813 199 YGGFGKCPG 207 (247)
Q Consensus 199 ~GGf~~~p~ 207 (247)
+|||...+.
T Consensus 684 ~Ggf~~~~~ 692 (732)
T 1w6k_A 684 NGDWPQENI 692 (732)
T ss_dssp TSCCCCCSC
T ss_pred CCCccCCcc
Confidence 999997653
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.63 E-value=8.1e-15 Score=126.38 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=120.2
Q ss_pred HHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCccCCCCC-----
Q 025813 31 SILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILN-CQSYDGGFGLTPGS----- 101 (247)
Q Consensus 31 ~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~-~Q~~dGGFg~~p~~----- 101 (247)
+.++++.++|++||||..++ +..++++.|-+++.++...... +...++++++||.+ .|++||+|....+-
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~-~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~ 120 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFN-NRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEM 120 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHhcCCCCCccccC-CCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhh
Confidence 34455999999999998765 3677899998899888888743 22345799999996 99999999765321
Q ss_pred --------CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-----------------------
Q 025813 102 --------ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA----------------------- 150 (247)
Q Consensus 102 --------~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~----------------------- 150 (247)
++++..|+.++.+|...+....+-.. ...+.++++++||.++++.
T Consensus 121 ~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~----~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~ 196 (277)
T 1qqf_A 121 IGGFRNTKEADVSLTAFVLIALQEARDICEGQVN----SLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEP 196 (277)
T ss_dssp GGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCT----THHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTT
T ss_pred cCCCCCCccCccchHHHHHHHHHhhhhccccCCC----chHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHH
Confidence 23355677778877766331000000 0023467899999888653
Q ss_pred ----------CCccccccCCC-CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHH
Q 025813 151 ----------DGGFQGRANKP-SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGY 219 (247)
Q Consensus 151 ----------dGgf~~~~~~~-~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al 219 (247)
+|+|-..++.. .++..|-|++-++...+. ....+++++||.+.|+.+|||... ..|..|+
T Consensus 197 ~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT-------q~T~~aL 267 (277)
T 1qqf_A 197 YLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST-------QATFMVF 267 (277)
T ss_dssp HHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH-------HHHHHHH
T ss_pred HHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc-------hHHHHHH
Confidence 33333223211 145555566555544443 456789999999999999999874 5777888
Q ss_pred HHHHh
Q 025813 220 TAFSL 224 (247)
Q Consensus 220 ~~L~l 224 (247)
-||+-
T Consensus 268 ~AL~~ 272 (277)
T 1qqf_A 268 QALAQ 272 (277)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.59 E-value=2.8e-14 Score=124.93 Aligned_cols=183 Identities=14% Similarity=0.021 Sum_probs=122.4
Q ss_pred HHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCC---cccHHHHHHHHHh-cCCCCCCccCCCCC-----
Q 025813 31 SILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS---GMDRERAKAYILN-CQSYDGGFGLTPGS----- 101 (247)
Q Consensus 31 ~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~---~~~~~~~~~~l~~-~Q~~dGGFg~~p~~----- 101 (247)
+.++++.++|++||||..+.. ..++++.|-+++..+....... ...++++++||.+ .|++||+|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~-~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~ 136 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVK-RAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 136 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTT-SCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHhcCCCCCcccCCC-CCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhh
Confidence 445559999999999987653 6778999988988888886432 2345799999996 99999999765321
Q ss_pred --------CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-----------------------
Q 025813 102 --------ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA----------------------- 150 (247)
Q Consensus 102 --------~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~----------------------- 150 (247)
++++..|++++.+|...+....+-.. ...+.++++++||.++|+.
T Consensus 137 ~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~----~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~ 212 (310)
T 2wy7_A 137 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVN----SLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGP 212 (310)
T ss_dssp GGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCT----THHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHH
T ss_pred cCCcccccccccchHHHHHHHHHhcccccccCCc----chHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHH
Confidence 23455677778877766431000000 0023467889999887653
Q ss_pred ----------CCccccccCCC-CchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHH
Q 025813 151 ----------DGGFQGRANKP-SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGY 219 (247)
Q Consensus 151 ----------dGgf~~~~~~~-~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al 219 (247)
+|+|-..++.. .++..|-|++-++...+. ....+++++||.+.|+.+|||... ..|..++
T Consensus 213 ~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT-------q~T~~aL 283 (310)
T 2wy7_A 213 LLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGST-------QATFMVF 283 (310)
T ss_dssp HHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTCH-------HHHHHHH
T ss_pred HHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc-------HHHHHHH
Confidence 23332222211 145566666666655554 346789999999999999999653 5777888
Q ss_pred HHHHhcCC
Q 025813 220 TAFSLLEE 227 (247)
Q Consensus 220 ~~L~ll~~ 227 (247)
-||+....
T Consensus 284 ~AL~~y~~ 291 (310)
T 2wy7_A 284 QALAQYQK 291 (310)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.42 E-value=1.3e-12 Score=117.10 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=116.2
Q ss_pred HHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCccCCCC------
Q 025813 30 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPG------ 100 (247)
Q Consensus 30 ~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGFg~~p~------ 100 (247)
++.++||.++|++||||..+.. ..++.+.|.+++..|...+.. +....+++++||++.|++||+|.....
T Consensus 94 ~~g~~~ll~~Q~~dGgf~~~~~-~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 94 QKGYMRIQQFRKADGSYAAWLS-RDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTT-SCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHhccCCCCCeeccCC-CCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 4678899999999999987653 466788888888888777632 233568999999999999999987521
Q ss_pred ------CCCChhhHHHHHHHHHHhCCcccc-----ccccCCCCCCCCHHHHHHHHHhc--CC------------------
Q 025813 101 ------SESHGGGTYCAVASLRLMGFIEDN-----VLSKNTSSSIIDLPLLLSWCLQR--QA------------------ 149 (247)
Q Consensus 101 ------~~s~~~~T~~al~~L~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~--Q~------------------ 149 (247)
.++++..|.+++.+|...+...++ +..+ ....++++++||.++ ++
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~----~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~ 248 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQR----VEASISKASSFLGEKASAGLLGAHAAAITAYALTLTK 248 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHH----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhh----hHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcC
Confidence 123467788888888765531100 0000 012356777888654 21
Q ss_pred ------------------CCCc---ccccc--------------------C-CC-CchhhHHHHHHHHHHhcCCCCCCHH
Q 025813 150 ------------------ADGG---FQGRA--------------------N-KP-SDTCYAFWIGSVLRMLGGYNLIDKE 186 (247)
Q Consensus 150 ------------------~dGg---f~~~~--------------------~-~~-~D~~~~y~a~~~L~lL~~~~~~~~~ 186 (247)
.+|+ |.... + .. .++.-|-|++-++...+. .....+
T Consensus 249 ~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~ 327 (367)
T 1hzf_A 249 APADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMAD 327 (367)
T ss_dssp CCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhH
Confidence 1333 32110 0 01 145555555555543332 122367
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhc
Q 025813 187 ALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLL 225 (247)
Q Consensus 187 ~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll 225 (247)
++++||.+.|+.+|||+.. ..|..|+-||+..
T Consensus 328 ~iv~WL~~qrn~~Ggw~sT-------qdTvvAL~AL~~y 359 (367)
T 1hzf_A 328 QASAWLTRQGSFQGGFRST-------QDTVIALDALSAY 359 (367)
T ss_dssp HHHHHHHHHTTSTTCSCSH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCcccH-------HHHHHHHHHHHHH
Confidence 8999999999999999865 4677777777543
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.35 E-value=6.9e-12 Score=107.93 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGR 157 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~~ 157 (247)
++++++++++|++||||+..++.+++...|.+++.+|..+..... + ....++++++||.+ .|.+||+|.++
T Consensus 41 ~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~-v-------~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 41 KKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIA-I-------DSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-C-------CHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCC-C-------CHHHHHHHHHHHHHhccCCCCCccCC
Confidence 456667999999999999999989999999999999998875320 0 01235789999995 99999999876
Q ss_pred cCC-------------CCchhhHHHHHHHHHHhcC-----CC--CCCHHHHHHHHHhcCCC-------------------
Q 025813 158 ANK-------------PSDTCYAFWIGSVLRMLGG-----YN--LIDKEALRGFLLTCQSQ------------------- 198 (247)
Q Consensus 158 ~~~-------------~~D~~~~y~a~~~L~lL~~-----~~--~~~~~~~~~~L~~~Q~~------------------- 198 (247)
... +.++.++.+++.+|...+. .+ ...++++++||.++|+.
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~ 192 (277)
T 1qqf_A 113 GPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK 192 (277)
T ss_dssp SCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence 531 2234445556666544421 11 11357899999998764
Q ss_pred --------------CCCcCCCCCCC-ccHHHHHHHHHHHHhcCC
Q 025813 199 --------------YGGFGKCPGDL-PDLYHSFYGYTAFSLLEE 227 (247)
Q Consensus 199 --------------~GGf~~~p~~~-~d~~~T~~al~~L~ll~~ 227 (247)
+|++-..|+.. .++..|.|++.+|...+.
T Consensus 193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~ 236 (277)
T 1qqf_A 193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD 236 (277)
T ss_dssp CCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC
Confidence 34444444432 267899999999988765
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.32 E-value=1.3e-11 Score=107.90 Aligned_cols=142 Identities=16% Similarity=0.081 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCcccc
Q 025813 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQG 156 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~ 156 (247)
+++++++++++|++||||+..++.+++...|.+++.+|..+..... + ....++++++||.+ .|.+||+|.+
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~-v-------~~~~i~~a~~~L~~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIA-I-------DSQVLCGAVKWLILEKQKPDGVFQE 127 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-C-------CHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCC-C-------CHHHHHHHHHHHHHhhcCCCCcccc
Confidence 3566777999999999999999888999999999999998875320 0 01135789999996 9999999987
Q ss_pred ccCC-------------CCchhhHHHHHHHHHHhcC-----CC--CCCHHHHHHHHHhcCCC------------------
Q 025813 157 RANK-------------PSDTCYAFWIGSVLRMLGG-----YN--LIDKEALRGFLLTCQSQ------------------ 198 (247)
Q Consensus 157 ~~~~-------------~~D~~~~y~a~~~L~lL~~-----~~--~~~~~~~~~~L~~~Q~~------------------ 198 (247)
+... +.++.++.+++.+|...+. .+ ...++++++||.++|+.
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g 207 (310)
T 2wy7_A 128 DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMG 207 (310)
T ss_dssp SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC
Confidence 6531 2234445556655544421 11 11357899999998763
Q ss_pred ---------------CCCcCCCCCCC-ccHHHHHHHHHHHHhcCC
Q 025813 199 ---------------YGGFGKCPGDL-PDLYHSFYGYTAFSLLEE 227 (247)
Q Consensus 199 ---------------~GGf~~~p~~~-~d~~~T~~al~~L~ll~~ 227 (247)
+|++-..|+.. .++..|+|++.+|...+.
T Consensus 208 ~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~ 252 (310)
T 2wy7_A 208 RLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD 252 (310)
T ss_dssp CCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC
Confidence 33443344332 267899999999988765
No 20
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.09 E-value=6.1e-10 Score=110.44 Aligned_cols=180 Identities=14% Similarity=0.048 Sum_probs=115.0
Q ss_pred HHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCccCCCC------
Q 025813 31 SILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILN-CQSYDGGFGLTPG------ 100 (247)
Q Consensus 31 ~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~-~Q~~dGGFg~~p~------ 100 (247)
+.++++.++|++||||..+.. +.++.+.|-+++..|...... +....+++++||.+ .|.+||.|.....
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~-~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m 381 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVK-RAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 381 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSS-SCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCC
T ss_pred HHHHHHHHhhcCCCCccccCC-CCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhh
Confidence 456668889999999997663 577888888888877777533 22346789999995 9999999965321
Q ss_pred --C-----CCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-----------------------
Q 025813 101 --S-----ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA----------------------- 150 (247)
Q Consensus 101 --~-----~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~----------------------- 150 (247)
. ++++..|.+++.+|...|....+-.. .....+.++++||.+.+..
T Consensus 382 ~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~----~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~ 457 (915)
T 2hr0_B 382 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVN----SLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGP 457 (915)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCT----THHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHH
T ss_pred cCCccCccccccccHHHHHHHHHhcccccccCcc----cchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHH
Confidence 0 23466677888888877653100000 0011345677777765432
Q ss_pred ----------CCc-cccccCC-CCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHH
Q 025813 151 ----------DGG-FQGRANK-PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYG 218 (247)
Q Consensus 151 ----------dGg-f~~~~~~-~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~a 218 (247)
+|. |.. ++. ..++.-+-|++-+|...+.. ....++++||.+.|+.+|||... ..|..|
T Consensus 458 ~l~~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~ST-------QdT~~A 527 (915)
T 2hr0_B 458 LLNKFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGST-------QATFMV 527 (915)
T ss_dssp HHHHHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCSH-------HHHHHH
T ss_pred HHHHHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccch-------hhHHHH
Confidence 222 221 111 12455556666666555543 34688999999999999999754 357777
Q ss_pred HHHHHhc
Q 025813 219 YTAFSLL 225 (247)
Q Consensus 219 l~~L~ll 225 (247)
+-||+..
T Consensus 528 l~AL~~y 534 (915)
T 2hr0_B 528 FQALAQY 534 (915)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 21
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.02 E-value=3.6e-09 Score=94.55 Aligned_cols=110 Identities=18% Similarity=0.097 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccccc
Q 025813 78 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 157 (247)
Q Consensus 78 ~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~ 157 (247)
++++++||+++|++||||+..++..++...|.+++..|..++... .+ ....++++++||.++|.+||+|.++
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~-~v-------~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV-GG-------SPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT-CC-------CHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh-CC-------CHHHHHHHHHHHHHhhccCCCcccc
Confidence 467899999999999999999887788898999999998886531 00 0124678999999999999999875
Q ss_pred cCC------------CCchhhHHHHHHHHHHhcCC-CC-----------CCHHHHHHHHHhc
Q 025813 158 ANK------------PSDTCYAFWIGSVLRMLGGY-NL-----------IDKEALRGFLLTC 195 (247)
Q Consensus 158 ~~~------------~~D~~~~y~a~~~L~lL~~~-~~-----------~~~~~~~~~L~~~ 195 (247)
... +.++.-|.|++.+|...+.. +. ..++++++||.++
T Consensus 165 ~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 165 CPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp SCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 332 23355556676666544421 00 1256788998665
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=2.7e-09 Score=109.48 Aligned_cols=178 Identities=12% Similarity=0.110 Sum_probs=111.1
Q ss_pred HHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC----CcccHHHHHHHHHhcCCCCCCccCCCC------
Q 025813 31 SILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW----SGMDRERAKAYILNCQSYDGGFGLTPG------ 100 (247)
Q Consensus 31 ~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~----~~~~~~~~~~~l~~~Q~~dGGFg~~p~------ 100 (247)
+.++++.++|++||||..++. +.++.+.|.+++..|..+... +....+++++||.+.|++||.|.....
T Consensus 876 ~g~~rll~~q~~dGgf~~f~~-~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~ 954 (1325)
T 2pn5_A 876 QGYQNQMRYRQTDGSFGLWET-TNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954 (1325)
T ss_dssp HHHHHHGGGBCTTSCBCSSSS-SCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHH
T ss_pred HHHHHHHhcCCCCCCeeccCC-CCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhh
Confidence 345566889999999998764 678899999999888887533 223357999999999999999865421
Q ss_pred ---CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-CCccc-----------cc--------
Q 025813 101 ---SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQ-----------GR-------- 157 (247)
Q Consensus 101 ---~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-dGgf~-----------~~-------- 157 (247)
-......|.+++.+|.-.|....+. ...++++++||.++|.. +++|. +.
T Consensus 955 ~g~~~~~~~~tayvl~aL~~~g~~~~~~--------~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~ 1026 (1325)
T 2pn5_A 955 QGGLRNGVALTSYVLMALLENDIAKAKH--------AEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026 (1325)
T ss_dssp HCCSSTTHHHHHHHHHHHHTCHHHHHHT--------HHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred cCcccCCccccHHHHHHHhhCccccccc--------HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 0123445555555554333221000 12356677888776654 55552 11
Q ss_pred ----------------cCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHH
Q 025813 158 ----------------ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTA 221 (247)
Q Consensus 158 ----------------~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~ 221 (247)
+...++++-+=|++-+|...+ ......++++||.+.|+.+|||... ..|.+++-|
T Consensus 1027 ~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~--~~~~~~~~v~wL~~q~~~~g~w~sT-------q~T~~aL~A 1097 (1325)
T 2pn5_A 1027 KLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAE--KYTDGIPVMNWLVNQRYVTGSFPST-------QDTFVGLKA 1097 (1325)
T ss_dssp HHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCTTSSCSSH-------HHHHHHHHH
T ss_pred HHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhc--cchhhHHHHHHHHhccCCCCCccch-------HHHHHHHHH
Confidence 001224444444443333333 2223467899999999999999754 467787777
Q ss_pred HHhcC
Q 025813 222 FSLLE 226 (247)
Q Consensus 222 L~ll~ 226 (247)
|+...
T Consensus 1098 L~~y~ 1102 (1325)
T 2pn5_A 1098 LTKMA 1102 (1325)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 23
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.97 E-value=2.8e-09 Score=95.44 Aligned_cols=174 Identities=10% Similarity=-0.026 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcccCCCCccccCC-------------------------------------CCCcchHHHHHHHHHHHHhc
Q 025813 29 SKSILTSMRNLQQHDGSFMPIHF-------------------------------------GAEKDLRFVYCAAAICFLLE 71 (247)
Q Consensus 29 ~~~~i~~l~~~q~~dGgf~~~~~-------------------------------------~~~~d~~~ty~al~~l~ll~ 71 (247)
.+++.+.|...|+++|||..... .+..|...|...+..|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 45789999999999999954110 01235556766666665543
Q ss_pred CC-----C---cccHHHHHHHHHhcCCCCCCccCCCCCC---------CChhhHHHHHHHHHHhCC--ccccccccCCC-
Q 025813 72 DW-----S---GMDRERAKAYILNCQSYDGGFGLTPGSE---------SHGGGTYCAVASLRLMGF--IEDNVLSKNTS- 131 (247)
Q Consensus 72 ~~-----~---~~~~~~~~~~l~~~Q~~dGGFg~~p~~~---------s~~~~T~~al~~L~~lg~--~~~~~~~~~~~- 131 (247)
.. + ....+|+++||+++|++||||+..--.. +| ..|..+|..|..++. .+.+.+.+..+
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 21 1 1235799999999999999998863211 11 235556666665544 11111100000
Q ss_pred CCCCCHHHHHHHHHhcCCC-CCccccccCCCC----------------chhhHHHHHHHHHHhcCCCCC-----CHHHHH
Q 025813 132 SSIIDLPLLLSWCLQRQAA-DGGFQGRANKPS----------------DTCYAFWIGSVLRMLGGYNLI-----DKEALR 189 (247)
Q Consensus 132 ~~~~~~~~~~~~l~~~Q~~-dGgf~~~~~~~~----------------D~~~~y~a~~~L~lL~~~~~~-----~~~~~~ 189 (247)
.....++++++||+..|.+ ||.|. +++..- -.+..-.+...+.+++..... .+++++
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av 320 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 0023578899999999999 99998 665310 111111222334445543221 268999
Q ss_pred HHHHhcCCCCCCcCC
Q 025813 190 GFLLTCQSQYGGFGK 204 (247)
Q Consensus 190 ~~L~~~Q~~~GGf~~ 204 (247)
+||.++|+.+|+|-.
T Consensus 321 ~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 321 AWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHSCCCC-----
T ss_pred HHHHHhhcCCCceee
Confidence 999999999999873
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.95 E-value=3.7e-09 Score=109.07 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHHHHHHhCC--CCCCCCH-------HHHHHHHHhcccCCCCccccCC-C--CCcchHHHHHHHHHHHHhc
Q 025813 4 GSNLASTYCALAILKAVGY--NFANIDS-------KSILTSMRNLQQHDGSFMPIHF-G--AEKDLRFVYCAAAICFLLE 71 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~--~~~~~~~-------~~~i~~l~~~q~~dGgf~~~~~-~--~~~d~~~ty~al~~l~ll~ 71 (247)
+++|+..+-.+.++..|.. .+..-.+ ++.++++.++|++||||..+.. . +.++.+.|-+++..|....
T Consensus 951 EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~ 1030 (1451)
T 4acq_A 951 EXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQAR 1030 (1451)
T ss_dssp TTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhh
Confidence 3556666666666655542 1211111 3567899999999999987642 1 4578888888888887765
Q ss_pred CC---CcccHHHHHHHHHhcCCCCCCccCCC---------CCCCChhhHHHHHHHHHHhCCc
Q 025813 72 DW---SGMDRERAKAYILNCQSYDGGFGLTP---------GSESHGGGTYCAVASLRLMGFI 121 (247)
Q Consensus 72 ~~---~~~~~~~~~~~l~~~Q~~dGGFg~~p---------~~~s~~~~T~~al~~L~~lg~~ 121 (247)
.. +....+++++||++.|++||+|...- +.++++..|.+++.+|...|..
T Consensus 1031 ~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~ 1092 (1451)
T 4acq_A 1031 AYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT 1092 (1451)
T ss_dssp TTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC
T ss_pred hhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC
Confidence 32 33456899999999999999997421 1235677899999999988864
No 25
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.79 E-value=3.5e-08 Score=101.29 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 158 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~ 158 (247)
++++++++++|++||||+..++.+++.+.|.+++..|..+.....++ ....++++++||.+.|.+||+|.+++
T Consensus 875 ~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v-------~~~~l~~a~~~L~~~q~~dG~f~~~~ 947 (1325)
T 2pn5_A 875 RQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDI-------DAAMVEKALDWLASKQHFSGRFDKAG 947 (1325)
T ss_dssp HHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCS-------CHHHHHHHHHHHHHTCCTTSCCCCCS
T ss_pred HHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcC-------CHHHHHHHHHHHHhhhccCCCccccc
Confidence 45566779999999999999999999999999999999875432100 01136789999999999999998754
Q ss_pred C-------CCCchhhHHHHHHHHHHhcCCC-----CCCHHHHHHHHHhcCCC-CCCc
Q 025813 159 N-------KPSDTCYAFWIGSVLRMLGGYN-----LIDKEALRGFLLTCQSQ-YGGF 202 (247)
Q Consensus 159 ~-------~~~D~~~~y~a~~~L~lL~~~~-----~~~~~~~~~~L~~~Q~~-~GGf 202 (247)
. +..+.+.+|.+....++++... ...++++++||.++|+. ++++
T Consensus 948 ~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~ 1004 (1325)
T 2pn5_A 948 AEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAY 1004 (1325)
T ss_dssp CCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHH
T ss_pred cccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHH
Confidence 2 1223334443332233333211 12356788899887754 4443
No 26
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.67 E-value=2.8e-08 Score=86.65 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=100.2
Q ss_pred HHHHHHhcccCCCCccccCC------------CCCcchHHHHHHHHHHHHhcCC--C---cccHHHHHHHHHhcCCCCCC
Q 025813 32 ILTSMRNLQQHDGSFMPIHF------------GAEKDLRFVYCAAAICFLLEDW--S---GMDRERAKAYILNCQSYDGG 94 (247)
Q Consensus 32 ~i~~l~~~q~~dGgf~~~~~------------~~~~d~~~ty~al~~l~ll~~~--~---~~~~~~~~~~l~~~Q~~dGG 94 (247)
+.+-|..-|+++|||...-. ....|-..|...+..|.-+... + ....+|+++||+++|++|||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 46777778999999965211 1235777787777777555321 1 23457999999999999999
Q ss_pred ccCC-CCC--------CCChhhHHHHHHHHHHhCCccccc----c-ccCCCCCCCCHHHHHHHHHhcCCCCCccccccCC
Q 025813 95 FGLT-PGS--------ESHGGGTYCAVASLRLMGFIEDNV----L-SKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK 160 (247)
Q Consensus 95 Fg~~-p~~--------~s~~~~T~~al~~L~~lg~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~ 160 (247)
|+.. |.. -+| ..|..+|..|..++...... . .+........++++++||++.|.++|||.++++.
T Consensus 116 WpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~ 194 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA 194 (332)
T ss_dssp CBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred ccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence 9986 221 112 34666777777764311000 0 0000000235789999999999999999988874
Q ss_pred CCc--hhh----------HHHHH---H-HHHHhcCCCCC----CHHHHHHHHHhcCC
Q 025813 161 PSD--TCY----------AFWIG---S-VLRMLGGYNLI----DKEALRGFLLTCQS 197 (247)
Q Consensus 161 ~~D--~~~----------~y~a~---~-~L~lL~~~~~~----~~~~~~~~L~~~Q~ 197 (247)
.-| +.. +.+++ . +..+++..... .++++++||.++|+
T Consensus 195 qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 195 QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 311 111 22222 2 22234432200 26889999999998
No 27
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.61 E-value=1.6e-07 Score=93.04 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCccccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGR 157 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~~ 157 (247)
++++++++++|++||||+..++.+++.+.|.+++..|..+..... + ....+.++++||.+ .|.+||+|...
T Consensus 302 ~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~-v-------~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 302 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIA-I-------DSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp HHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSC-C-------CHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred HHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCC-C-------CHHHHHHHHHHHHHhhccCCCccccC
Confidence 456778999999999999999888899999999998887754310 0 01236789999995 99999999754
Q ss_pred cCC-------------CCchhhHHHHHHHHHHhcCC---CC--C--CHHHHHHHHHhcCCC-------------------
Q 025813 158 ANK-------------PSDTCYAFWIGSVLRMLGGY---NL--I--DKEALRGFLLTCQSQ------------------- 198 (247)
Q Consensus 158 ~~~-------------~~D~~~~y~a~~~L~lL~~~---~~--~--~~~~~~~~L~~~Q~~------------------- 198 (247)
..- +.+...+.+++.+|...+.. .. . .++++++||.+.+..
T Consensus 374 ~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~ 453 (915)
T 2hr0_B 374 APVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR 453 (915)
T ss_dssp SCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTC
T ss_pred ccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCC
Confidence 321 12444455566666655432 11 1 245788898876533
Q ss_pred --------------CCC-cCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 199 --------------YGG-FGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 199 --------------~GG-f~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
+|. |........++..|.|++.+|...+..
T Consensus 454 ~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~ 498 (915)
T 2hr0_B 454 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF 498 (915)
T ss_dssp CCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh
Confidence 122 222111123678899999999887653
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.52 E-value=3.9e-06 Score=81.65 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCCHHHHHHH-------HHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCC---
Q 025813 7 LASTYCALAILKAVGYN--FANIDSKSILTS-------MRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS--- 74 (247)
Q Consensus 7 l~~Ty~a~~~L~~lg~~--~~~~~~~~~i~~-------l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~--- 74 (247)
+..+.++...|...++. +..-.++++.++ +.+.|++||||..++ ++.++++.|-+++..+.......
T Consensus 339 ~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~-~~~~s~wLTAyV~~~l~~A~~~i~id 417 (767)
T 4fxk_B 339 LAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGS 417 (767)
T ss_dssp THHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSS-SSCBCHHHHHHHHHHHHHTCSSSSCC
T ss_pred hhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCchhHHHHHHHHHHHHhhcCcc
Confidence 34444555555555531 221123455444 455799999999765 36678999988988888876542
Q ss_pred cccHHHHHHHHHhcCCCCCCccCCC------------CCCCChhhHHHHHHHHHHh
Q 025813 75 GMDRERAKAYILNCQSYDGGFGLTP------------GSESHGGGTYCAVASLRLM 118 (247)
Q Consensus 75 ~~~~~~~~~~l~~~Q~~dGGFg~~p------------~~~s~~~~T~~al~~L~~l 118 (247)
.....+++.||++.|.+||.|-..- +.++++..|++++.+|...
T Consensus 418 ~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~ 473 (767)
T 4fxk_B 418 PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHG 473 (767)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhc
Confidence 3345688899999999999986531 1123466677777777654
No 29
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.49 E-value=7.7e-07 Score=80.03 Aligned_cols=124 Identities=15% Similarity=-0.048 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCCC-----cccHHHHH
Q 025813 8 ASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS-----GMDRERAK 82 (247)
Q Consensus 8 ~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~-----~~~~~~~~ 82 (247)
-...+++.+|-..|.++ +++.+..|...|+. ++|.. ++..++..+-.|+.+|..++..+ ...+++++
T Consensus 137 Yq~sL~vLALC~~g~~v----~~~~v~~Ll~~~~~-~~~~~---g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al 208 (414)
T 2bb6_A 137 YQYSLGILALCVHQKRV----HDSVVGKLLYAVEH-KPHLL---QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLAL 208 (414)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHS-SSCSC---CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCc----cHHHHHHHHHHhhc-cCcCC---CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Confidence 34445566666666533 35566666666653 45642 34568899988888888886421 12244555
Q ss_pred ----HHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccc
Q 025813 83 ----AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 155 (247)
Q Consensus 83 ----~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~ 155 (247)
++|++.|++||+|| ++.+|..||++|...+..+.+. .-+..++++||++ |.+||+|.
T Consensus 209 ~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~--------~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 209 KRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVEL--------GTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHH--------HHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccc--------cchHHHHHHHHHH-hccCCCCC
Confidence 88889999999997 4788999999999888753220 0146789999999 99999997
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.46 E-value=1.1e-06 Score=90.87 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCCCCccCCCC----CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCcc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPG----SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGF 154 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~----~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf 154 (247)
+++++|++++|++||||+..+. .+++.+.|.+++..|..+..... + ....+.++++||.++|.+||+|
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~-v-------~~~~l~~a~~wL~~~Q~~dG~f 1057 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIF-I-------DEAHITQALIWLSQRQKDNGCF 1057 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSC-C-------CTHHHHHHHHHHHHTEETTTEE
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcc-c-------CHHHHHHHHHHHHhhcccCCcc
Confidence 5778999999999999998864 45889999999999988764310 0 0224788999999999999999
Q ss_pred cc--cc------CC-CCchhhHHHHHHHHHHhcCCCC-CCHHHHHHHHHhc
Q 025813 155 QG--RA------NK-PSDTCYAFWIGSVLRMLGGYNL-IDKEALRGFLLTC 195 (247)
Q Consensus 155 ~~--~~------~~-~~D~~~~y~a~~~L~lL~~~~~-~~~~~~~~~L~~~ 195 (247)
.. +. ++ +.++.-+-+++.+|...+.... ..++++++||.++
T Consensus 1058 ~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1058 RSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp CCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred cccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 83 32 11 2455556667777766664211 1256777777654
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.41 E-value=5.7e-06 Score=86.66 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=104.7
Q ss_pred HHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCccCCC--------C-
Q 025813 34 TSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILN-CQSYDGGFGLTP--------G- 100 (247)
Q Consensus 34 ~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~-~Q~~dGGFg~~p--------~- 100 (247)
+-+.+.|++||+|..++. +.++++.|-+++..|...... +....+++++||.+ .|++||.|.... +
T Consensus 1053 ~r~l~~q~~dGsfs~w~~-~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg 1131 (1661)
T 2b39_A 1053 TQQLAFRQKSSAYAAFQY-RPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGG 1131 (1661)
T ss_dssp HHHHTTBCTTSCBCSSTT-SCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCC
T ss_pred HHHHHhhcCCCCccccCC-CCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCC
Confidence 334467999999997763 677899999998888877643 23345789999995 999999985421 1
Q ss_pred ----CCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc-----------------------------
Q 025813 101 ----SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR----------------------------- 147 (247)
Q Consensus 101 ----~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------- 147 (247)
.++++..|.+++.+|...+....+...+ ....+.++++||.+.
T Consensus 1132 ~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~----~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g~~a~~~l~ 1207 (1661)
T 2b39_A 1132 FRDTREKDVSLTAFVLIALHEAKDICEAQVNS----LGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLGKLEGDRLT 1207 (1661)
T ss_dssp TTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSS----HHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccCccccHHHHHHHHHhccccccccCcc----hhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 1236677788888887665421000000 000123344444332
Q ss_pred -----CCCCCccccccCCCCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHH
Q 025813 148 -----QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAF 222 (247)
Q Consensus 148 -----Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L 222 (247)
......|....+...|+.-+-+++-++...+... ...++++||.+.|+.+|||... ..|..|+-||
T Consensus 1208 ~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~~--~~~~iv~wL~~qr~~~gg~~ST-------qdT~~Al~AL 1278 (1661)
T 2b39_A 1208 KFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDYD--TTPPVVRWLNEQRYYGGGYGST-------QATFMVFQAL 1278 (1661)
T ss_dssp HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT--TSHHHHHHHHHCCTBTTBBCSH-------HHHHHHHHHH
T ss_pred HHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCChh--hHHHHHHHHHhcccCCCCcccc-------hHHHHHHHHH
Confidence 1111112211011124444445555554455432 3477899999999999999864 4566677666
Q ss_pred Hhc
Q 025813 223 SLL 225 (247)
Q Consensus 223 ~ll 225 (247)
+..
T Consensus 1279 ~~y 1281 (1661)
T 2b39_A 1279 AQY 1281 (1661)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 32
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.40 E-value=1e-07 Score=85.39 Aligned_cols=143 Identities=14% Similarity=-0.011 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHHhCCC-C--CCC----CHHHHHHHHHhcccCCCCccccCCCC--------CcchHHHHHHHHHHH
Q 025813 4 GSNLASTYCALAILKAVGYN-F--ANI----DSKSILTSMRNLQQHDGSFMPIHFGA--------EKDLRFVYCAAAICF 68 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~-~--~~~----~~~~~i~~l~~~q~~dGgf~~~~~~~--------~~d~~~ty~al~~l~ 68 (247)
+++.-.|..++.+|.-+... . +.. -.++.++||.++|+++|||..+.... ..| ..|--.+..|.
T Consensus 145 T~DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~ 223 (408)
T 1r76_A 145 TIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLS 223 (408)
T ss_dssp BCGGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHH
Confidence 35556788888888876532 0 110 12589999999999999997653211 112 22323333343
Q ss_pred HhcCC--------------CcccHHHHHHHHHhcCCC-CCCccCC-----CC---------CCCChhhHHHHHHHH-HHh
Q 025813 69 LLEDW--------------SGMDRERAKAYILNCQSY-DGGFGLT-----PG---------SESHGGGTYCAVASL-RLM 118 (247)
Q Consensus 69 ll~~~--------------~~~~~~~~~~~l~~~Q~~-dGGFg~~-----p~---------~~s~~~~T~~al~~L-~~l 118 (247)
.++.. .....+|+++||++.|.+ ||.+-.. .+ .|.-..++..++.+| .++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM 303 (408)
T 1r76_A 224 DIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLM 303 (408)
T ss_dssp HHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHT
T ss_pred HHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHc
Confidence 33321 113457999999999999 9976521 00 111122233333332 233
Q ss_pred CCcc--ccccccCCCCCCCCHHHHHHHHHhcCCCCCccc
Q 025813 119 GFIE--DNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 155 (247)
Q Consensus 119 g~~~--~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~ 155 (247)
+... ++. ...++++++||.++|.+||+|.
T Consensus 304 ~~~~~~~~~--------~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 304 EIEAPSDAV--------KQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp TSSSCCHHH--------HHHHHHHHHHHHHSCCCC----
T ss_pred cCCCCCHHH--------HHHHHHHHHHHHHhhcCCCcee
Confidence 3321 111 1148899999999999999997
No 33
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.23 E-value=3e-06 Score=76.21 Aligned_cols=140 Identities=10% Similarity=-0.062 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCcc--ccccccCCCCCCCCHHH
Q 025813 62 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE--DNVLSKNTSSSIIDLPL 139 (247)
Q Consensus 62 ~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~--~~~~~~~~~~~~~~~~~ 139 (247)
+++.+|..-|.. ..++.+..++..|+ +++|.. +...++..|.-|+.+|..++... +.. ...+++
T Consensus 141 L~vLALC~~g~~---v~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~--------~~~i~~ 206 (414)
T 2bb6_A 141 LGILALCVHQKR---VHDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQ--------RNRINL 206 (414)
T ss_dssp HHHHHHHHTTCC---CCHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGG--------HHHHHH
T ss_pred HHHHHHHHcCCC---ccHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcch--------HHHHHH
Confidence 566666666642 34456666666665 345642 22346778887888887776531 000 012444
Q ss_pred HH----HHHHhcCCCCCccccccCCCCchhhHHHHHHHHHHhcCCCC---CCHHHHHHHHHhcCCCCCCcCCCCCCCccH
Q 025813 140 LL----SWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL---IDKEALRGFLLTCQSQYGGFGKCPGDLPDL 212 (247)
Q Consensus 140 ~~----~~l~~~Q~~dGgf~~~~~~~~D~~~~y~a~~~L~lL~~~~~---~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~ 212 (247)
++ ++|.+.|++||+|+ +...|-.|+.+|...+.... ++..+++++|++ |..+|+|+ ++
T Consensus 207 al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np 271 (414)
T 2bb6_A 207 ALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NP 271 (414)
T ss_dssp HHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SH
T ss_pred HHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------Ch
Confidence 44 88888899999996 34556678888877764211 355679999999 99999997 55
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 025813 213 YHSFYGYTAFSLLEEPGL 230 (247)
Q Consensus 213 ~~T~~al~~L~ll~~~~~ 230 (247)
..|+.++.+|.--.+.++
T Consensus 272 ~ataQ~lpaL~gkty~dv 289 (414)
T 2bb6_A 272 LMISQLLPVLNQKSYVDL 289 (414)
T ss_dssp HHHHHHHHHTTTCCGGGG
T ss_pred HHHHHHHHHhcCCCcccc
Confidence 788888888854443333
No 34
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.17 E-value=2.3e-07 Score=96.63 Aligned_cols=180 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC----CcccHHHHHHHHHh-cCCCCCCccCCC---------
Q 025813 34 TSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW----SGMDRERAKAYILN-CQSYDGGFGLTP--------- 99 (247)
Q Consensus 34 ~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~----~~~~~~~~~~~l~~-~Q~~dGGFg~~p--------- 99 (247)
+-+.+.|++||||..+.. ..+++|.|-+++..+...... +....+++++||.+ +|++||.|....
T Consensus 1037 qr~l~yq~~DGsfs~w~~-~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~G 1115 (1642)
T 3prx_B 1037 AQQMVYKKADHSYAAFTN-RASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQG 1115 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCCeecCCC-CCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccC
Confidence 334457899999987642 567788888888777766532 33446789999997 899999995531
Q ss_pred ---CCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCC-CCccc-----------c--------
Q 025813 100 ---GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQ-----------G-------- 156 (247)
Q Consensus 100 ---~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-dGgf~-----------~-------- 156 (247)
+.++++..|.+++.+|.-.+....+...+ ....+.++++||.+.-.. ..-|. +
T Consensus 1116 g~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~----~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~ 1191 (1642)
T 3prx_B 1116 GIQGAEEEVYLTAFILVALLESKTICNDYVNS----LDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVL 1191 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCCcccchHHHHHHHHhccccccccccc----chHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHH
Confidence 12456777888877776654321000000 012355666666543111 00110 0
Q ss_pred -----------ccCC-CCchhhHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHh
Q 025813 157 -----------RANK-PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 157 -----------~~~~-~~D~~~~y~a~~~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~l 224 (247)
++++ ..++.-|=+| .|++|..........+++||.+.|+..|||+-.. .|..|+-||+-
T Consensus 1192 ~l~~~~~~~W~~~~~~~~~VE~TaYa--LLa~l~~~~~~~a~~iv~WL~~qr~~~Ggf~STQ-------dTvvaLqALa~ 1262 (1642)
T 3prx_B 1192 MAASTGRDHWEEYNAHTHNIEGTSYA--LLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQ-------ATVMAFQALAE 1262 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCCCCCCCCchHHHHHHHHH--HHHHhccCchhhHHHHHHHHHHhccCCCcccCcH-------HHHHHHHHHHH
Confidence 0110 0122222222 2223322122234678999999999999998763 45566666655
Q ss_pred cCC
Q 025813 225 LEE 227 (247)
Q Consensus 225 l~~ 227 (247)
...
T Consensus 1263 Y~~ 1265 (1642)
T 3prx_B 1263 YEI 1265 (1642)
T ss_dssp ---
T ss_pred HHH
Confidence 444
No 35
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.98 E-value=1.3e-05 Score=71.65 Aligned_cols=101 Identities=13% Similarity=-0.022 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcccCCCCccccCCCCCcchHHHHHHHHHHHHhcC---CC---------cccHHHHHHHHHhcCCCCCCcc
Q 025813 29 SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WS---------GMDRERAKAYILNCQSYDGGFG 96 (247)
Q Consensus 29 ~~~~i~~l~~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~---~~---------~~~~~~~~~~l~~~Q~~dGGFg 96 (247)
+.+.+.-|...++.||+ ..++..+-.++.+|.-+.. .. ...+++++++|++.|++||+||
T Consensus 132 ~~~~v~kLl~~~~~~g~--------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANSS--------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHHHHHHHHHHHCCS--------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred CHHHHHHHHHHHHccCC--------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 56677777777777742 1256777777777766654 11 1234678889999999999997
Q ss_pred CCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCC-CHHHHHHHHHhcCCCCCccc
Q 025813 97 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSII-DLPLLLSWCLQRQAADGGFQ 155 (247)
Q Consensus 97 ~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Q~~dGgf~ 155 (247)
++.+|.-|+++|...+..+. .. +..++.+||++ |.+||+|.
T Consensus 204 -------n~yST~LA~QAL~~~~~~~~----------~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 204 -------DIYSTGLAMQALSVTPEPSK----------KEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp -------SHHHHHHHHHHHHHCSSCCS----------SCCCHHHHHHHHHH-HHTTTTTC
T ss_pred -------ccccHHHHHHHHHhcCCCcc----------ccccHHHHHHHHHH-HhhCCCcC
Confidence 58999999999999987531 12 78899999999 89999997
No 36
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.91 E-value=5.7e-06 Score=72.11 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCC----CCHHHHHHHHHhcccCCCCccccCCCC--------CcchHHHHHHHHHHHHhc
Q 025813 4 GSNLASTYCALAILKAVGYNFAN----IDSKSILTSMRNLQQHDGSFMPIHFGA--------EKDLRFVYCAAAICFLLE 71 (247)
Q Consensus 4 ~~~l~~Ty~a~~~L~~lg~~~~~----~~~~~~i~~l~~~q~~dGgf~~~~~~~--------~~d~~~ty~al~~l~ll~ 71 (247)
+++.-.|..++.+|.-+....+. --.++.++||.++|.++|||..+.... ..| ..|--.+..|..++
T Consensus 70 t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~ 148 (332)
T 1gxm_A 70 TIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAA 148 (332)
T ss_dssp ECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHH
T ss_pred CccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcch-HHHHHHHHHHHHHH
Confidence 35566788888888765431111 012689999999999999998753211 122 23334444554443
Q ss_pred C----C------------CcccHHHHHHHHHhcCCCCCCccCCCC---------------CCCChhhHHHHHHHHHHhCC
Q 025813 72 D----W------------SGMDRERAKAYILNCQSYDGGFGLTPG---------------SESHGGGTYCAVASLRLMGF 120 (247)
Q Consensus 72 ~----~------------~~~~~~~~~~~l~~~Q~~dGGFg~~p~---------------~~s~~~~T~~al~~L~~lg~ 120 (247)
. . .....+|+++||++.|.++||+-+.-+ .|+-+.++..++..+..+-.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~ 228 (332)
T 1gxm_A 149 NKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMT 228 (332)
T ss_dssp TTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTT
T ss_pred hccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhcc
Confidence 2 1 112357899999999999998654422 12223333334444333322
Q ss_pred cc--ccccccCCCCCCCCHHHHHHHHHhcCC
Q 025813 121 IE--DNVLSKNTSSSIIDLPLLLSWCLQRQA 149 (247)
Q Consensus 121 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 149 (247)
.+ ++++ ..++++++||.++|.
T Consensus 229 ~~~~~~v~--------~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 229 QPQTAEIE--------QAVRAGVAWFNSPRT 251 (332)
T ss_dssp SCCCHHHH--------HHHHHHHHHHTCTTT
T ss_pred CCCCHHHH--------HHHHHHHHHHHhccc
Confidence 22 1111 138899999999998
No 37
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.88 E-value=8.1e-05 Score=78.13 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHHHHHHHH-------hcccCCCCccccCCCCCcchHHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCccC
Q 025813 29 SKSILTSMR-------NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILN-CQSYDGGFGL 97 (247)
Q Consensus 29 ~~~~i~~l~-------~~q~~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~-~Q~~dGGFg~ 97 (247)
+++++++|. +.|++||+|..+. ++.++++.|-+++..+...... +....+++++||.+ .|++||.|..
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~-~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWK-GGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCBCSSS-SSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccC-CCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 456666643 5789999999774 4677899999988888777643 23345789999999 9999999864
Q ss_pred CCC--------C------CCChhhHHHHHHHHHHhC
Q 025813 98 TPG--------S------ESHGGGTYCAVASLRLMG 119 (247)
Q Consensus 98 ~p~--------~------~s~~~~T~~al~~L~~lg 119 (247)
... . ++++..|.+++.+|...+
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~ 1156 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAF 1156 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CccccchhhcCCcccccccCccccHHHHHHHHHhcc
Confidence 311 0 124556667777776543
No 38
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.78 E-value=4.3e-05 Score=68.32 Aligned_cols=129 Identities=9% Similarity=-0.105 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCC---ccc--cccccCCCCCCCCHHHHHHHHHhcCCC
Q 025813 76 MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGF---IED--NVLSKNTSSSIIDLPLLLSWCLQRQAA 150 (247)
Q Consensus 76 ~~~~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~---~~~--~~~~~~~~~~~~~~~~~~~~l~~~Q~~ 150 (247)
....+.+.-|+..|+.||+ .-++..+.-|+.+|..+.. ... ....+ . ...+++++++|.+.|++
T Consensus 130 ~v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~-i---~~ai~~~~~~l~~~q~~ 198 (399)
T 2pmv_A 130 EATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSL-F---GQVLKDIVEKISMKIKD 198 (399)
T ss_dssp HHHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHH-H---HHHHHHHHHHHTTSBCT
T ss_pred CCCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHH-H---HHHHHHHHHHHHHhhcC
Confidence 3456667777777777742 1246666667777766655 110 00000 0 11356788899999999
Q ss_pred CCccccccCCCCchhhHHHHHHHHHHhcC--CCCCCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHhcCCC
Q 025813 151 DGGFQGRANKPSDTCYAFWIGSVLRMLGG--YNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 228 (247)
Q Consensus 151 dGgf~~~~~~~~D~~~~y~a~~~L~lL~~--~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~ll~~~ 228 (247)
||+|+ |...|=-|+.+|...+. ...++..++.+||++ |..+|+|+ ++..|+..+-+|.--++.
T Consensus 199 dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL~~ktyl 263 (399)
T 2pmv_A 199 NGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSLKGKTYL 263 (399)
T ss_dssp TSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHHTTCCGG
T ss_pred CCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHhcCCCcc
Confidence 99996 56666678888888775 234578899999999 99999996 567888888888554444
Q ss_pred CC
Q 025813 229 GL 230 (247)
Q Consensus 229 ~~ 230 (247)
++
T Consensus 264 dv 265 (399)
T 2pmv_A 264 DV 265 (399)
T ss_dssp GG
T ss_pred Cc
Confidence 44
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.69 E-value=0.0012 Score=64.13 Aligned_cols=69 Identities=25% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhcCCCCCccc
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 155 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dGgf~ 155 (247)
+++++-+++.|++||||+..++..++.+.|.+++..|..+...-.- ....+.+++.||.+.|.+||.|.
T Consensus 371 ~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~i--------d~~~i~~a~~wL~~~Q~~~G~f~ 439 (767)
T 4fxk_B 371 QKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG--------SPEKLQETSNWLLSQQQADGSFQ 439 (767)
T ss_dssp HHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSC--------CHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCc--------chHHHHHHHHHHHHhhhhcccch
Confidence 3455566789999999999998889999999999999887553200 01135678999999999999996
No 40
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.62 E-value=0.00064 Score=71.31 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCcccccc-
Q 025813 81 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGRA- 158 (247)
Q Consensus 81 ~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~~~- 158 (247)
+++-+++.|++||||+.+++.+++.+.|.+++..|..+...-. + . ...+.++++||.+ +|.+||.|....
T Consensus 1051 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~-v-~------~~~l~~a~~~L~~~~q~~~g~f~~~~~ 1122 (1661)
T 2b39_A 1051 GYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIA-I-D------SKDLCETVKWLILEKQKPDGIFQEDGP 1122 (1661)
T ss_dssp HHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-C-C------HHHHHHHHHHHHHHTBCTTSCBCCCSC
T ss_pred HHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhccc-C-C------HHHHHHHHHHhhHhhCCCCCccccccc
Confidence 4445668999999999999888899999999999988754310 0 0 1136789999995 999999996321
Q ss_pred -------C-----CCCchhhHHHHHHHHHHhcCC---CC--C--CHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHH
Q 025813 159 -------N-----KPSDTCYAFWIGSVLRMLGGY---NL--I--DKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGY 219 (247)
Q Consensus 159 -------~-----~~~D~~~~y~a~~~L~lL~~~---~~--~--~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al 219 (247)
+ .+.+...+.+++.+|.-.+.. .. . .++++.+||.+.... ..+.+......
T Consensus 1123 ~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~la 1192 (1661)
T 2b39_A 1123 VIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE----------LRRPYTVAIAA 1192 (1661)
T ss_dssp CCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT----------CCSHHHHHHHH
T ss_pred eechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc----------cCCHHHHHHHH
Confidence 1 112555555566666544321 11 1 245788999775421 24455555555
Q ss_pred HHHHhcCCC
Q 025813 220 TAFSLLEEP 228 (247)
Q Consensus 220 ~~L~ll~~~ 228 (247)
.+|++.|..
T Consensus 1193 yAL~l~g~~ 1201 (1661)
T 2b39_A 1193 YALALLGKL 1201 (1661)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCc
Confidence 666666654
No 41
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.09 E-value=0.0023 Score=67.25 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=77.6
Q ss_pred HHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCcccccc---CC
Q 025813 85 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGRA---NK 160 (247)
Q Consensus 85 l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~~~---~~ 160 (247)
+++.|++||||+.+++.+++.+.|.+++..|..+...- .+ . ...+.++++||.+ +|.+||.|.... +.
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v-~------~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~ 1127 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYV-EQ-N------QNSICNSLLWLVENYQLDNGSFKENSQYQPI 1127 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTS-CC-C------HHHHHHHHHHHHHHSBCTTSCBCCCSSCCCC
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcc-cC-C------HHHHHHHHHHHHHhhCCCCCcccCCccccch
Confidence 46789999999999888889999999999998774321 00 0 1136789999999 999999996321 11
Q ss_pred -----C------CchhhHHHHHHHHHHhcCC-CC----CCHHHHHHHHHhcCCCCCCcCCCCCCCccHHHHHHHHHHHHh
Q 025813 161 -----P------SDTCYAFWIGSVLRMLGGY-NL----IDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 224 (247)
Q Consensus 161 -----~------~D~~~~y~a~~~L~lL~~~-~~----~~~~~~~~~L~~~Q~~~GGf~~~p~~~~d~~~T~~al~~L~l 224 (247)
. .|...+.+++.+|.-.+.. +. ..++++.+||.+.... ..+.+.......+|++
T Consensus 1128 ~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~lA~Al~l 1197 (1676)
T 3cu7_A 1128 KLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAISAYALSL 1197 (1676)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHHHHHHHTT
T ss_pred hhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHh
Confidence 0 1343444455555333221 00 1245788999765321 1344544444455556
Q ss_pred cCCC
Q 025813 225 LEEP 228 (247)
Q Consensus 225 l~~~ 228 (247)
.+..
T Consensus 1198 ~g~~ 1201 (1676)
T 3cu7_A 1198 GDKT 1201 (1676)
T ss_dssp SCTT
T ss_pred cCCc
Confidence 5554
No 42
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.03 E-value=0.0065 Score=59.01 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=43.2
Q ss_pred CchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCCCcCCCC-CCCccHHHHHHHHHHHHhcCCCCCCC
Q 025813 162 SDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGKCP-GDLPDLYHSFYGYTAFSLLEEPGLNP 232 (247)
Q Consensus 162 ~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~~p-~~~~d~~~T~~al~~L~ll~~~~~~~ 232 (247)
.|...--|.+..|-=||-...+ .++.+.++|-++-... |.+..+ ...+|+..|..++-.|-..|+.-..+
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~d 340 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDIDDTAMGLRILRLHGYNVSSD 340 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 4555555666666666643222 1346677776554433 343333 23479999999999999999864433
No 43
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.95 E-value=0.0083 Score=58.54 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=44.3
Q ss_pred CchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCCCcCC-CCCCCccHHHHHHHHHHHHhcCCCCCCC
Q 025813 162 SDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGK-CPGDLPDLYHSFYGYTAFSLLEEPGLNP 232 (247)
Q Consensus 162 ~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~-~p~~~~d~~~T~~al~~L~ll~~~~~~~ 232 (247)
.|...--|.+..|-=||-...+ .++.+.++|-++-...| .+. +++...|+..|..+.-.|-..|+.-..+
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~d 368 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERG-IGWGRLNPIADLETTALGFRLLRLHRYNVSPA 368 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTC-CCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHHHHHHHHHHHHHcCCCccHh
Confidence 4555556666666666643222 23466777766554333 432 3444689999999999999999864433
No 44
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.92 E-value=0.01 Score=57.47 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCC-CCccccccC-CCCchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCCCcCC-CCCCCccHH
Q 025813 139 LLLSWCLQRQAA-DGGFQGRAN-KPSDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGK-CPGDLPDLY 213 (247)
Q Consensus 139 ~~~~~l~~~Q~~-dGgf~~~~~-~~~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~-~p~~~~d~~ 213 (247)
+|.+||.+..+. +|| .|. -+.|...--|.+..|--||-...+ .++.+.++|-++....| .+. +++...|+.
T Consensus 222 ~~~~YL~~~~~~~~g~---VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~ 297 (764)
T 3p5p_A 222 KCFTFLNNLLDKFGGC---VPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERG-IGWGRDSLVPDLN 297 (764)
T ss_dssp HHHHHHHHHHHHHTSC---CCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSTTCSSCCHH
T ss_pred hHHHHHHHHHHhcCCC---CCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHH
Confidence 455565554322 222 233 234566666777777777743322 23467777766554433 432 244458999
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 025813 214 HSFYGYTAFSLLEEPGLNP 232 (247)
Q Consensus 214 ~T~~al~~L~ll~~~~~~~ 232 (247)
.|..++-.|-..|+.-..+
T Consensus 298 ~tAl~FRlLR~~Gy~VS~d 316 (764)
T 3p5p_A 298 TTALGLRTLRMHGYNVSSD 316 (764)
T ss_dssp HHHHHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHHHhcCCCccHh
Confidence 9999999999999864433
No 45
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.86 E-value=0.016 Score=55.75 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=43.6
Q ss_pred CchhhHHHHHHHHHHhcCCCCC--CHHHHHHHHHhcCCCCCCcCCCC-CCCccHHHHHHHHHHHHhcCCCCCCCC
Q 025813 162 SDTCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGKCP-GDLPDLYHSFYGYTAFSLLEEPGLNPL 233 (247)
Q Consensus 162 ~D~~~~y~a~~~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~~p-~~~~d~~~T~~al~~L~ll~~~~~~~~ 233 (247)
.|...--|.+-.|-=||-...+ .++.+.++|-++...+| .+..+ ....|+..|..++-.|-..|+.-..++
T Consensus 243 ~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g-~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~Dv 316 (727)
T 3pya_A 243 VDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNG-ICWARCSHVQDIDDTAMAFRLLRQHGYQVSADV 316 (727)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcC-cccccCCCCCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 4555555666666666643222 23467777766644333 33222 235799999999999999998754444
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.37 E-value=0.00055 Score=71.51 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCCcccc
Q 025813 80 RAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQG 156 (247)
Q Consensus 80 ~~~~~l~~~Q~~dGGFg~~p~~~s~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Q~~dGgf~~ 156 (247)
.+++-+++.|++||||+.+.+.+++.+.|.+++-.|......-..+ + ...+.++++||.+ +|.+||.|..
T Consensus 1034 ~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~V-d------~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1034 TGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGI-S------HEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCC-C------HHHHHHHHHHHHhhccCCCCcccc
Confidence 4445566899999999999777788899999998888764421000 0 2246789999997 8999999963
No 47
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.42 E-value=0.032 Score=54.41 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=58.4
Q ss_pred HHHHHHHHhccc---CCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCCC--CC
Q 025813 30 KSILTSMRNLQQ---HDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSE--SH 104 (247)
Q Consensus 30 ~~~i~~l~~~q~---~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~--s~ 104 (247)
++.++-++.+.+ .||.++..+ +-+.-|.| |+...-++....+.-...++||+..|.+||+||...... .-
T Consensus 57 ~~Lie~VK~~l~~~~~~g~~g~~S----~S~YDTAW-VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 131 (817)
T 3sdr_A 57 EVLVSEIKAMLNPAITGDGESMIT----PSAYDTAW-VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR 131 (817)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCCC----CCHHHHHH-HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred HHHHHHHHHHhccccCCCCCcccc----cCHHHhhH-HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 456777777655 565222111 12445556 222211222233445788999999999999999643211 13
Q ss_pred hhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc
Q 025813 105 GGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147 (247)
Q Consensus 105 ~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (247)
+.+|..||.+|..-+..+ ..+++++.||.+.
T Consensus 132 ll~TlAcvlAL~~w~~~~------------~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 132 LLATLSCVLVLLKWNVGD------------LQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCH------------HHHHHHHHHHHHH
Confidence 677888888877644332 1356677777654
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=94.39 E-value=0.042 Score=53.36 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=56.7
Q ss_pred HHHHHHHHhccc--CCCCccccCCCCCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCccCCCCCCC-C-h
Q 025813 30 KSILTSMRNLQQ--HDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSES-H-G 105 (247)
Q Consensus 30 ~~~i~~l~~~q~--~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~s-~-~ 105 (247)
+..++-|+++.+ .+|...+ -+.-|.| |+...-++....+.-...++||+..|.+||+||....... + +
T Consensus 34 ~~~~~~i~~~~~~~~~g~~S~-------S~YDTAW-Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l 105 (785)
T 3s9v_A 34 ETLISEIKNMFRCMGYGETNP-------SAYDTAW-VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRI 105 (785)
T ss_dssp HHHHHHHHHHHHHCSSCCCCC-------CHHHHHH-HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcccC-------cHHHhhH-HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHH
Confidence 345666666543 3333322 2345556 2211112222334457889999999999999997532111 3 7
Q ss_pred hhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc
Q 025813 106 GGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147 (247)
Q Consensus 106 ~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (247)
.+|..||.+|..-+..+ ..+++++.||.+.
T Consensus 106 ~~TlAcvlAL~~w~~~~------------~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 106 LATLACIITLTLWRTGE------------TQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHHHHTTCCH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCH------------HHHHHHHHHHHHH
Confidence 78888888887654332 1356677777653
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=94.14 E-value=0.064 Score=51.96 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=57.2
Q ss_pred HHHHHHHHhcccC--CCCccccCCCCCcchHHHHHHHHHHHHh--cCCCcccHHHHHHHHHhcCCCCCCccCCCCCC--C
Q 025813 30 KSILTSMRNLQQH--DGSFMPIHFGAEKDLRFVYCAAAICFLL--EDWSGMDRERAKAYILNCQSYDGGFGLTPGSE--S 103 (247)
Q Consensus 30 ~~~i~~l~~~q~~--dGgf~~~~~~~~~d~~~ty~al~~l~ll--~~~~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~--s 103 (247)
+..++-|+++.+. +|...+ -+.-|.| |+...-+ +....+.-...++||+..|.+||+||...... .
T Consensus 11 ~~~~~~i~~~~~~~~~g~~S~-------S~YDTAW-Vamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d 82 (764)
T 3p5p_A 11 DELVVKIKDMFNALGDGDISP-------SAYDTAW-VARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCD 82 (764)
T ss_dssp HHHHHHHHHHHHTCSSCCCCC-------CHHHHHH-HHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHH
T ss_pred HHHHHHHHHHHhcCCCCcccC-------cHHHHHH-HHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHH
Confidence 5567777766442 333322 2345656 2222122 22223345788999999999999999643211 1
Q ss_pred ChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc
Q 025813 104 HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147 (247)
Q Consensus 104 ~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (247)
-+.+|..||.+|..-+..+ ..+++++.||.+.
T Consensus 83 ~ll~TlAcvlAL~~w~~~~------------~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 83 RLLNTTNSVIALSVWKTGH------------SQVQQGAEFIAEN 114 (764)
T ss_dssp HHHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCH------------HHHHHHHHHHHHH
Confidence 3667888887777644332 1356777777653
No 50
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=90.81 E-value=0.29 Score=47.01 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccc--CCCCccccCCCCCcchHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcCCCCCCccCCCCCC--C
Q 025813 29 SKSILTSMRNLQQ--HDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSE--S 103 (247)
Q Consensus 29 ~~~~i~~l~~~q~--~dGgf~~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~Q~~dGGFg~~p~~~--s 103 (247)
.+..++-++++-. .||...+ -+.-|.| | ++.-.+ ..+.-...++||+.-|.+||+||...... .
T Consensus 11 ~~~~~~~ir~~l~~~~~g~~S~-------S~YDTAW-V---Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D 79 (727)
T 3pya_A 11 FKEAVKSVKTILRNLTDGEITI-------SAYDTAW-V---ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHD 79 (727)
T ss_dssp HHHHHHHHHHHHHTCCSCCCCC-------CHHHHHH-H---HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHH
T ss_pred HHHHHHHHHHHHHhccCCcccC-------cHHHhHH-H---hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhh
Confidence 3556666666533 3454432 1344555 2 223221 22335788999999999999999632111 1
Q ss_pred ChhhHHHHHHHHHHhCCccccccccCCCCCCCCHHHHHHHHHhc
Q 025813 104 HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 147 (247)
Q Consensus 104 ~~~~T~~al~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (247)
-+.+|..||.+|..-+..+ -.+++++.||.+.
T Consensus 80 ~ll~TLAcvlAL~~w~~~~------------~~i~rGl~fl~~n 111 (727)
T 3pya_A 80 RLINTLACVVALRSWNLFP------------HQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCH------------HHHHHHHHHHHHH
Confidence 3677888888777643322 1256677777653
No 51
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=60.72 E-value=66 Score=27.91 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=55.5
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHhcccCCC---CccccCCC--CCcchHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC
Q 025813 15 AILKAVGYNFANIDSKSILTSMRNLQQHDG---SFMPIHFG--AEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQ 89 (247)
Q Consensus 15 ~~L~~lg~~~~~~~~~~~i~~l~~~q~~dG---gf~~~~~~--~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 89 (247)
.-|...|. +.....+|++..-..+| ++.....+ ........+.|++++..+...+..--+.+++-+...|
T Consensus 239 L~La~~g~-----~~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq 313 (350)
T 3ren_A 239 LNRIEAGE-----NEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQ 313 (350)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcCC-----CcHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 33666664 23445888885211122 12211111 1123445677777776665434555678888888888
Q ss_pred CCC------CCccCCCCCCCChhhHHHHHHHHH
Q 025813 90 SYD------GGFGLTPGSESHGGGTYCAVASLR 116 (247)
Q Consensus 90 ~~d------GGFg~~p~~~s~~~~T~~al~~L~ 116 (247)
.+| |||+.......|...-.-++.+..
T Consensus 314 ~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 314 IKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp CCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 777 889887666666665555555443
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.05 E-value=23 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhcccCC
Q 025813 11 YCALAILKAVGYNFANIDSKSILTSMRNLQQHD 43 (247)
Q Consensus 11 y~a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~d 43 (247)
..|..+|+.-+. |.+++++||-+...|.
T Consensus 34 ~qA~kALKat~~-----NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 34 ECVLRAMKKKGE-----NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHCS-----CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCC-----CHHHHHHHHHhCCCCC
Confidence 345666666664 7899999999987764
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=35.76 E-value=1.1e+02 Score=26.56 Aligned_cols=90 Identities=13% Similarity=-0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHhcccCCCCccccCC--CCCcchHHHHHHHHH-HHHh--cCCCc
Q 025813 8 ASTYCALAILKAVGYNFANIDS-------KSILTSMRNLQQHDGSFMPIHF--GAEKDLRFVYCAAAI-CFLL--EDWSG 75 (247)
Q Consensus 8 ~~Ty~a~~~L~~lg~~~~~~~~-------~~~i~~l~~~q~~dGgf~~~~~--~~~~d~~~ty~al~~-l~ll--~~~~~ 75 (247)
+.+|.-+.+|..+........+ +++++++.+.|.+||-|..... ....+...|-..+.+ +... |..+.
T Consensus 237 W~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~ 316 (382)
T 3pmm_A 237 WLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQ 316 (382)
T ss_dssp HHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcH
Confidence 4455555666664421111122 4677888888999998864331 122344444322222 2222 22222
Q ss_pred c---cHHHHHHHHHhcCCCCCCccC
Q 025813 76 M---DRERAKAYILNCQSYDGGFGL 97 (247)
Q Consensus 76 ~---~~~~~~~~l~~~Q~~dGGFg~ 97 (247)
. ..+|+.+-|.+..++||-.+.
T Consensus 317 ~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 317 HYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp GGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 1 346888899999999985543
No 54
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.41 E-value=1.5e+02 Score=26.57 Aligned_cols=86 Identities=7% Similarity=-0.018 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHhcccCCCCccccCC--CCCcchHHHHHHHH-HHHH--hcCCCc
Q 025813 8 ASTYCALAILKAVGYNFANIDS-------KSILTSMRNLQQHDGSFMPIHF--GAEKDLRFVYCAAA-ICFL--LEDWSG 75 (247)
Q Consensus 8 ~~Ty~a~~~L~~lg~~~~~~~~-------~~~i~~l~~~q~~dGgf~~~~~--~~~~d~~~ty~al~-~l~l--l~~~~~ 75 (247)
+.++.-+.+|..|..+. ..+ .++++++.+.|.+||-|..... +...+...|-..+. .+.. +|..+.
T Consensus 270 W~~~gl~~~l~~lp~~~--~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 270 WALLTACELLDVLPEDY--PQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHSCTTC--TTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 45566666666666431 223 4567888888999998864331 12234444322222 1122 233221
Q ss_pred ----ccHHHHHHHHHhcCCCCCCc
Q 025813 76 ----MDRERAKAYILNCQSYDGGF 95 (247)
Q Consensus 76 ----~~~~~~~~~l~~~Q~~dGGF 95 (247)
...+|+.+-|.++.++||-.
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQV 371 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCB
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCE
Confidence 12367888888888899854
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=34.36 E-value=71 Score=27.82 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCC-CChhhHHHHHHHHHH-----hCCccccccccCCCCCCCCHHHHHHHHHhcCCCCC
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSE-SHGGGTYCAVASLRL-----MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 152 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~-s~~~~T~~al~~L~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dG 152 (247)
++++++++++|.+||-|-.....+ +-..++..|+.+-.+ .|..+++. ....+++.+-|.++.++||
T Consensus 266 ~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y--------~~~a~ka~~~l~~~i~~dG 337 (382)
T 3pmm_A 266 DAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHY--------AGVAEKAIRGIVQNISPQG 337 (382)
T ss_dssp HHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGG--------HHHHHHHHHHHHHTBCTTS
T ss_pred HHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHH--------HHHHHHHHHHHHhhCCCCC
Confidence 578889999999999887654332 222333334333222 23333211 1235679999999888998
Q ss_pred cccc
Q 025813 153 GFQG 156 (247)
Q Consensus 153 gf~~ 156 (247)
-..+
T Consensus 338 ~l~~ 341 (382)
T 3pmm_A 338 ELLQ 341 (382)
T ss_dssp CBCS
T ss_pred CEeC
Confidence 7654
No 56
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=33.37 E-value=84 Score=22.64 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHhccc-CCCCccc--------cCCCCCcchHHHHHHHHHHHHhcCC----------
Q 025813 13 ALAILKAVGYNFANIDSKSILTSMRNLQQ-HDGSFMP--------IHFGAEKDLRFVYCAAAICFLLEDW---------- 73 (247)
Q Consensus 13 a~~~L~~lg~~~~~~~~~~~i~~l~~~q~-~dGgf~~--------~~~~~~~d~~~ty~al~~l~ll~~~---------- 73 (247)
+..+|...| . +.+++++||..++. .|-+|.. ...+.+.....-.-.+..|.-+|-.
T Consensus 25 ~~kAl~~~g----~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~ 99 (118)
T 4ae4_A 25 VLRAMKAAG----A-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLL 99 (118)
T ss_dssp HHHHHHHHC----S-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHC----c-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455555 2 68999999999863 2223321 0000111111112234444445531
Q ss_pred CcccHHHHHHHHHhc
Q 025813 74 SGMDRERAKAYILNC 88 (247)
Q Consensus 74 ~~~~~~~~~~~l~~~ 88 (247)
..-+++++++||.++
T Consensus 100 ~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 100 HNNDQDNALEDLMAR 114 (118)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHh
Confidence 234789999999876
No 57
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.61 E-value=63 Score=20.92 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=13.9
Q ss_pred CHHHHHHHHHhcccCCC
Q 025813 28 DSKSILTSMRNLQQHDG 44 (247)
Q Consensus 28 ~~~~~i~~l~~~q~~dG 44 (247)
|.+++|+||.+.+..+|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 78999999999876544
No 58
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.77 E-value=67 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHhcccCCC
Q 025813 14 LAILKAVGYNFANIDSKSILTSMRNLQQHDG 44 (247)
Q Consensus 14 ~~~L~~lg~~~~~~~~~~~i~~l~~~q~~dG 44 (247)
+.+|..-+ -|.+++++||.+.+-++.
T Consensus 48 ~~AL~~t~-----Gnve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 48 LQALVATD-----GDIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHTT-----SCHHHHHHHHHTCCCCCC
T ss_pred HHHHHHhC-----CCHHHHHHHHHhCCCCCC
Confidence 44554444 378999999998776653
No 59
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=28.85 E-value=32 Score=22.42 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Q 025813 1 MHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNL 39 (247)
Q Consensus 1 ~~~~~~l~~Ty~a~~~L~~lg~~~~~~~~~~~i~~l~~~ 39 (247)
|-+.+.+.++|+|+..... |. .+..+++..-|++.
T Consensus 1 m~~~~ela~~YAAllL~~~-g~---~~ta~~I~~il~Aa 35 (69)
T 2lbf_A 1 MASVSELACIYSALILHDD-EV---TVTEDKINALIKAA 35 (69)
T ss_dssp CCCHHHHHHHHHHHHHHHH-TC---CCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcC-CC---CCCHHHHHHHHHHc
Confidence 3446689999999665555 74 34566666666554
No 60
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.16 E-value=1.7e+02 Score=26.05 Aligned_cols=70 Identities=14% Similarity=-0.012 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCC-CChhhHHHHHHHHHH-----hCCccccccccCCCCCCCCHHHHHHHHHhcCCCCC
Q 025813 79 ERAKAYILNCQSYDGGFGLTPGSE-SHGGGTYCAVASLRL-----MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 152 (247)
Q Consensus 79 ~~~~~~l~~~Q~~dGGFg~~p~~~-s~~~~T~~al~~L~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~dG 152 (247)
++.++.++++|.+||-|-.....+ +-..++..|+.+-.+ .|..+.+.. ....+++.+.|.++.++||
T Consensus 297 ~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y-------~~~A~ka~~~L~~~i~~dG 369 (445)
T 3k11_A 297 RAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAY-------GPVAQLGWHAVAGKINEEG 369 (445)
T ss_dssp HHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHH-------HHHHHHHHHHHHTTBCTTS
T ss_pred HHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 578889999999999877654322 223333334433222 344321100 1235678888988888888
Q ss_pred ccc
Q 025813 153 GFQ 155 (247)
Q Consensus 153 gf~ 155 (247)
-..
T Consensus 370 ~l~ 372 (445)
T 3k11_A 370 QVE 372 (445)
T ss_dssp CBC
T ss_pred CEe
Confidence 654
No 61
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.51 E-value=1e+02 Score=18.75 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHhcccC
Q 025813 13 ALAILKAVGYNFANIDSKSILTSMRNLQQH 42 (247)
Q Consensus 13 a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~ 42 (247)
++.+|..-+. |.+++++||.+....
T Consensus 27 n~~AL~~~~G-----dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATGG-----DVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHTS-----CHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCC-----CHHHHHHHHHhCCCc
Confidence 4556655553 778999999986543
No 62
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.10 E-value=95 Score=20.35 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHhcccCC
Q 025813 13 ALAILKAVGYNFANIDSKSILTSMRNLQQHD 43 (247)
Q Consensus 13 a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~d 43 (247)
++.+|...+. |.+++++||.+.+.|+
T Consensus 46 a~~AL~~~~~-----nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD-----DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS-----CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC-----CHHHHHHHHHHCCCCC
Confidence 4445554442 6789999999877664
No 63
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.97 E-value=1.2e+02 Score=19.12 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHhcccCC
Q 025813 13 ALAILKAVGYNFANIDSKSILTSMRNLQQHD 43 (247)
Q Consensus 13 a~~~L~~lg~~~~~~~~~~~i~~l~~~q~~d 43 (247)
|+.+|...+. |.+++++||.+.+.+.
T Consensus 26 a~~AL~~~~~-----nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 26 SRQALMDNGN-----NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHTTS-----CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhCC-----CHHHHHHHHHHCCCCc
Confidence 4455555442 6899999999977654
Done!