BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025814
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D A
Sbjct: 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73
Query: 197 LKEMNGKYVGNRPIKLRKSKWQER 220
+++M G+++G R I ++ W R
Sbjct: 74 IQQMGGQWLGGRQI---RTNWATR 94
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D
Sbjct: 13 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 72
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQER 220
A+ M G+++G R I ++ W R
Sbjct: 73 AIVHMGGQWLGGRQI---RTNWATR 94
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 115 KSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK 174
K I W + ++ + LF GDL V+D+ L AF FPS+ V+ D
Sbjct: 64 KQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 123
Query: 175 RTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
+TG ++GYGF+SF + D A+ M G+ + RP+++
Sbjct: 124 QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L + +D+L + F K++ DK K Y F+ + D AL+ +
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTL 61
Query: 201 NGKYVGNRPIKL 212
NGK + N +K+
Sbjct: 62 NGKQIENNIVKI 73
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ LF GDL V+D+ L AF FPS+ V+ D +TG ++GYGF+SF + D A+
Sbjct: 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61
Query: 199 EMNGKYVGNRPIKL 212
M G+ + RP+++
Sbjct: 62 SMQGQDLNGRPLRI 75
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GF++F N D
Sbjct: 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 67
Query: 194 AAALKEMNGKYVGNRPIKL 212
A+ MNGK V R I++
Sbjct: 68 KDAMMAMNGKSVDGRQIRV 86
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ +F GDL E+ ++ AF+ F + A+VV+D TGK+KGYGF+SF N D A++
Sbjct: 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 66
Query: 199 EMNGKYVGNRPIKLRKSKWQER 220
+M G+++G R I ++ W R
Sbjct: 67 QMGGQWLGGRQI---RTNWATR 85
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+LF G L E N+ +L F + + +++D RT K++G+ FI+F NP+D A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67
Query: 200 MNGKYVGNRPIKLRKSK 216
MNGK + + IK+ ++K
Sbjct: 68 MNGKSLHGKAIKVEQAK 84
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+F G+L E+++ +L FS F K++RD TG +KGY FI+FA+ AA++
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67
Query: 200 MNGKYVGNRPIKL 212
MNG+Y+ NRPI +
Sbjct: 68 MNGQYLCNRPITV 80
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL+ G L + +D+L F F +++ D TG++KGYGFI+F++ AL++
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87
Query: 200 MNGKYVGNRPIKLRKSKWQERTD 222
+NG + RP+K+ ERTD
Sbjct: 88 LNGFELAGRPMKV--GHVTERTD 108
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L + ++D+ L KAFS F + AKV+ + G++KG+GF+ F++P + A+ EM
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 201 NGKYVGNRPIKLRKSKWQE 219
NG+ V +P+ + ++ +E
Sbjct: 76 NGRIVATKPLYVALAQRKE 94
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192
E PE LF L E D L+ F F + AKV DK+T +K +GF+SF NP
Sbjct: 36 EGPEG-CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94
Query: 193 IAAALKEMNGKYVGNRPIKLRKSK 216
A+K MNG VG + +K++ K
Sbjct: 95 AQVAIKAMNGFQVGTKRLKVQLKK 118
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
+Y LF GDL +V+D +L + F + +PS KVV D+ TG +KGYGF+ F + + A
Sbjct: 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 67
Query: 197 LKEMNGKY-VGNRPIKL 212
L E G +G++P++L
Sbjct: 68 LTECQGAVGLGSKPVRL 84
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192
E PE LF L E D L + F F + AKV DK+T +K +GF+S+ NP
Sbjct: 21 EGPEG-ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 79
Query: 193 IAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKP 237
AA++ MNG +G + +K++ L+RSKN ++ P
Sbjct: 80 AQAAIQSMNGFQIGMKRLKVQ------------LKRSKNDSKSGP 112
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L + +D+L F F + +++D TG++KGYGFI+F++ AL+++
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 201 NGKYVGNRPIKLRKSKWQERTD 222
NG + RP +R ER D
Sbjct: 68 NGFELAGRP--MRVGHVTERLD 87
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
P++ ++LF G L N +NDD + + + F +V+D TG +KGY F + + +
Sbjct: 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 170
Query: 195 AALKEMNGKYVGNRPIKLRKS 215
A+ +NG +G++ + ++++
Sbjct: 171 QAIAGLNGMQLGDKKLLVQRA 191
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L EV+D VL AF F ++ D T K +G+ F+ F D AAA+ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 201 NGKYVGNRPIKLRKSK 216
N + R I++ +K
Sbjct: 68 NESELFGRTIRVNLAK 83
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L EV+D VL AF F ++ D T K +G+ F+ F D AAA+ M
Sbjct: 10 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69
Query: 201 NGKYVGNRPIKLRKSK 216
N + R I++ +K
Sbjct: 70 NESELFGRTIRVNLAK 85
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L EV+D VL AF F ++ D T K +G+ F+ F D AAA+ M
Sbjct: 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125
Query: 201 NGKYVGNRPIKL 212
N + R I++
Sbjct: 126 NESELFGRTIRV 137
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L EV+D VL AF F ++ D T K +G+ F+ F D AAA+ M
Sbjct: 15 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74
Query: 201 NGKYVGNRPIKLRKSK 216
N + R I++ +K
Sbjct: 75 NESELFGRTIRVNLAK 90
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
E D +F G+L V +++L + F + + +D R GK K +GF+ F +P ++
Sbjct: 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-REGKPKSFGFVCFKHPESVSY 72
Query: 196 ALKEMNGKYVGNRPIKL 212
A+ +NG + RPI +
Sbjct: 73 AIALLNGIRLYGRPINV 89
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
++LF G L N +NDD + + + F +V+D TG +KGY F + + + A+
Sbjct: 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154
Query: 199 EMNGKYVGNRPIKLRKS 215
+NG +G++ + ++++
Sbjct: 155 GLNGMQLGDKKLLVQRA 171
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
++LF G L N +NDD + + + F +V+D TG +KGY F + + + A+
Sbjct: 97 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 156
Query: 199 EMNGKYVGNRPIKLRKS 215
+NG +G++ + ++++
Sbjct: 157 GLNGMQLGDKKLLVQRA 173
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G L EV+D VL AF F ++ D T K +G+ F+ F D AAA+ M
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 64
Query: 201 NGKYVGNRPIKL 212
N + R I++
Sbjct: 65 NESELFGRTIRV 76
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 195 AAL 197
AA+
Sbjct: 70 AAM 72
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68
Query: 195 AAL 197
AA+
Sbjct: 69 AAM 71
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 158
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 195 AAL 197
AA+
Sbjct: 70 AAM 72
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL +V + +L + FS +V RD T ++ GY +++F P+D AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + +P+++ W +R
Sbjct: 73 NFDVIKGKPVRI---MWSQR 89
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +++ L FS F + KVV D+ +KGYGF+ F A+++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 201 NGKYVGNRPIKLRKSKWQERTDFEALERSK 230
NG + +R + + + K ++ + E R+K
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL +V + +L + FS +V RD T ++ GY +++F P+D AL M
Sbjct: 18 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + +P+++ W +R
Sbjct: 78 NFDVIKGKPVRI---MWSQR 94
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +++ L FS F + KVV D+ +KGYGF+ F A+++M
Sbjct: 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 163
Query: 201 NGKYVGNRPIKLRKSKWQERTDFEALERSK 230
NG + +R + + + K ++ + E R+K
Sbjct: 164 NGMLLNDRKVFVGRFKSRKEREAELGARAK 193
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 8 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 67
Query: 195 AAL 197
AA+
Sbjct: 68 AAM 70
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 104 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 157
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 195 AAL 197
AA+
Sbjct: 63 AAM 65
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 152
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 159 FSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
F K+VRDK TG++ GYGF+++++P+D A+ +NG + + IK+
Sbjct: 25 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 78
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
PE +LF G L E D+ L F ++ + V+RD T +++G+GF+++A ++
Sbjct: 11 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 70
Query: 195 AAL 197
AA+
Sbjct: 71 AAM 73
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
++F G + + + L F ++ + +++ D+ +GK +G+ F++F + +
Sbjct: 107 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 160
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
++F G L + +D L + F ++ + K+++D TG+++G+GF+SF PS + +K
Sbjct: 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64
Query: 200 ---MNGKYV 205
++GK +
Sbjct: 65 QHILDGKVI 73
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 106 IEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSF 165
++ K K++IPR +T ++F G +G +V + FS++ +
Sbjct: 68 LDGKVIDPKRAIPRDEQDKTG-------------KIFVGGIGPDVRPKEFEEFFSQWGTI 114
Query: 166 NMAKVVRDKRTGKTKGYGFISF 187
A+++ DK TG+++G+GF+++
Sbjct: 115 IDAQLMLDKDTGQSRGFGFVTY 136
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
++LF G L N +NDD + + + F +V+D TG +KGY F + + + A+
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 199 EMNGKYVGNRPIKLRKS 215
+NG +G++ + ++++
Sbjct: 62 GLNGMQLGDKKLLVQRA 78
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
D F K+VRDK TG++ GYGF+++++P+D A+ +NG + + IK+
Sbjct: 19 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 78
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ L ++ + + FS++ ++++ D+ TG ++G GFI F + A+
Sbjct: 90 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 149
Query: 198 KEMNGK 203
K +NG+
Sbjct: 150 KGLNGQ 155
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
R++ G + E+ +D + +AF+ F + D T K KG+ F+ + P AL++
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 200 MNGKYVGNRPIKLRK 214
MN +G R IK+ +
Sbjct: 75 MNSVMLGGRNIKVGR 89
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANP 190
LAE R++ + +++DD + F F + RD TGK KGYGFI +
Sbjct: 103 LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKA 162
Query: 191 SDIAAALKEMNGKYVGNRPIKLRKS 215
A+ MN +G + +++ K+
Sbjct: 163 QSSQDAVSSMNLFDLGGQYLRVGKA 187
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANP 190
LAE R++ + +++DD + F F A + RD TGK KGYGFI +
Sbjct: 118 LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177
Query: 191 SDIAAALKEMNGKYVGNRPIKLRKS 215
A+ MN +G + +++ K+
Sbjct: 178 QSSQDAVSSMNLFDLGGQYLRVGKA 202
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
R++ G + E+ +D + +AF+ F + D T K KG+ F+ + P AL++
Sbjct: 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89
Query: 200 MNGKYVGNRPIKLRK 214
MN +G R IK+ +
Sbjct: 90 MNSVMLGGRNIKVGR 104
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 159 FSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
F K+VRDK TG++ GYGF+++ +P D A+ +NG + + IK+
Sbjct: 23 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ L + L + FS++ ++++ D+ TG ++G GFI F + A+
Sbjct: 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147
Query: 198 KEMNGK 203
K +NG+
Sbjct: 148 KGLNGQ 153
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
++F G L D L K F F A V+ D++TGK++GYGF++ A+ + A K+
Sbjct: 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78
Query: 200 MN 201
N
Sbjct: 79 PN 80
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G++ E ++ L FS ++V D+ TGK KGYGF + + +A++ +
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 201 NGKYVGNRPIKL 212
NG+ R +++
Sbjct: 71 NGREFSGRALRV 82
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
D L FS AK++RDK G + GYGF+++ D A+ +NG + ++ IK+
Sbjct: 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF +L N V +++L KAFS+F +R K K Y FI F A++EM
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHFDERDGAVKAMEEM 65
Query: 201 NGKYVGNRPIKL 212
NGK + I++
Sbjct: 66 NGKDLEGENIEI 77
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D +++ G+LGN N L +AF + V R+ G+ F+ F +P D A A+
Sbjct: 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP-----PGFAFVEFEDPRDAADAV 127
Query: 198 KEMNGKYVGNRPIKLRKSKWQER 220
+E++G+ + +++ S ++R
Sbjct: 128 RELDGRTLCGCRVRVELSNGEKR 150
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L + D L FS AK++RDK G + GYGF+++ D A+ +
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 201 NGKYVGNRPIKL 212
NG + ++ IK+
Sbjct: 65 NGLRLQSKTIKV 76
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L + D L FS AK++RDK G + GYGF+++ D A+ +
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 66
Query: 201 NGKYVGNRPIKL 212
NG + ++ IK+
Sbjct: 67 NGLRLQSKTIKV 78
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L + D L FS AK++RDK G + GYGF+++ D A+ +
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 201 NGKYVGNRPIKL 212
NG + ++ IK+
Sbjct: 65 NGLRLQSKTIKV 76
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
+F G + +++ + F+R+ S K++ D RTG +KGYGF+SF N D+
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDV 63
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
+F G + +++ + F+R+ S K++ D RTG +KGYGF+SF N D+
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDV 63
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L ++ D L F N +++RD +TG + GY F+ F + D A+K +
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 201 NGKYVGNRPIKL 212
NG V N+ +K+
Sbjct: 66 NGITVRNKRLKV 77
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ +L + DD L F ++ S ++RDK TG+ +G F+ + + A+
Sbjct: 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148
Query: 198 KEMNGKY--VGNRPIKLR 213
+N G++P+ +R
Sbjct: 149 SALNNVIPEGGSQPLSVR 166
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L ++ D L F N +++RD +TG + GY F+ F + D A+K +
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 201 NGKYVGNRPIKL 212
NG V N+ +K+
Sbjct: 66 NGITVRNKRLKV 77
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + + + L + F + +V KR+GK +GY FI + + D+ +A K
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 201 NGKYVGNR 208
+GK + R
Sbjct: 165 DGKKIDGR 172
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D +++ G+LGN N L +AF + V R+ G+ F+ F +P D A A+
Sbjct: 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP-----PGFAFVEFEDPRDAADAV 127
Query: 198 KEMNGKYVGNRPIKLRKSKWQER 220
++++G+ + +++ S ++R
Sbjct: 128 RDLDGRTLCGCRVRVELSNGEKR 150
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDI 193
+F G + +++ + F+R+ S K++ D RTG +KGYGF+SF N D+
Sbjct: 13 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDV 64
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
R++ G + E+ +D + +AF+ F D T K KG+ F+ + P AL++
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 200 MNGKYVGNRPIKLRK 214
N +G R IK+ +
Sbjct: 74 XNSVXLGGRNIKVGR 88
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANP 190
LAE R++ + +++DD + F F + RD TGK KGYGFI +
Sbjct: 102 LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKA 161
Query: 191 SDIAAALKEMNGKYVGNRPIKLRKS 215
A+ N +G + +++ K+
Sbjct: 162 QSSQDAVSSXNLFDLGGQYLRVGKA 186
>pdb|2DIV|A Chain A, Solution Structure Of The Rrm Domain Of Trna
Selenocysteine Associated Protein
Length = 99
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
L+ GDL ++++ +S+AF+ M+ K++R++ TG GY F+ FA+ + L +
Sbjct: 12 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71
Query: 200 MNGK 203
+NGK
Sbjct: 72 INGK 75
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 150 VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP 209
V++ L + F R+ K+V D+ T +++GYGF+ F + S A+ +NG + N+
Sbjct: 54 VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113
Query: 210 IKL 212
+K+
Sbjct: 114 LKV 116
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L L + D L F N ++ RD +TG + GY F+ F + D A+K +
Sbjct: 17 LIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVL 76
Query: 201 NGKYVGNRPIKL 212
NG V N+ +K+
Sbjct: 77 NGITVRNKRLKV 88
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ +L + DD L F ++ S ++RDK TG+ +G F+ + + A+
Sbjct: 100 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 159
Query: 198 KEMNGKY--VGNRPIKLR 213
+N G++P+ +R
Sbjct: 160 SALNNVIPEGGSQPLSVR 177
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D ++ G L +V++ +L + F + + +D+ TG+ +GYGF+ F + D A+
Sbjct: 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74
Query: 198 KEMNGKYVGNRPIKLRKS 215
K M+ + +PI++ K+
Sbjct: 75 KIMDMIKLYGKPIRVNKA 92
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 163 PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215
P N+ K++ D +TG++KGY FI F + A+A++ +NG +G+R +K S
Sbjct: 28 PVINL-KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 163 PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215
P N+ K++ D +TG++KGY FI F + A+A++ +NG +G+R +K S
Sbjct: 30 PVINL-KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 81
>pdb|1FJ7|A Chain A, Solution Structure Of Nucleolin Rbd1
Length = 101
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFI 185
EDP + LF G+L + L A S + N VV D RTG + +G++
Sbjct: 5 LEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVRTGTNRKFGYV 63
Query: 186 SFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221
F + D+ AL E+ G V IKL K K ++ T
Sbjct: 64 DFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDGT 98
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 163 PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215
P N+ K++ D +TG++KGY FI F + A+A++ +NG +G+R +K S
Sbjct: 29 PVINL-KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 80
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ +L + DD L F ++ S ++RDK TG+ +G F+ + + A+
Sbjct: 13 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 72
Query: 198 KEMNGKY--VGNRPIKLR 213
+N G++P+ +R
Sbjct: 73 SALNNVIPEGGSQPLSVR 90
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + + + L + F + +V KR+GK +GY FI + + D+ +A K
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 201 NGKYVGNR 208
+GK + R
Sbjct: 165 DGKKIDGR 172
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RLF G+L ++ ++ + F R+ + + RD+ G+GFI + + A E
Sbjct: 24 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAE 77
Query: 200 MNGKYVGNRPIKLR 213
++G + +RP+++R
Sbjct: 78 LDGTILKSRPLRIR 91
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA 188
L +L V++++L +AFS+F A VV D R G+ G GF+ FA
Sbjct: 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR-GRATGKGFVEFA 145
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF L + ++ L ++F A++V D+ TG +KG+GF+ F + D AA + M
Sbjct: 18 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74
Query: 201 -NGKYVGNR 208
+G+ GN+
Sbjct: 75 EDGEIDGNK 83
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+LF G L + L FS++ +++DK T +++G+GF+ F +P+ + L
Sbjct: 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77
Query: 200 ----MNGKYVGNRPIKLR 213
++G+ + +P R
Sbjct: 78 RPHTLDGRNIDPKPCTPR 95
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
P +F +L +++ L FS F + KVV D+ +KGYGF+ F
Sbjct: 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAE 59
Query: 195 AALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSK 230
A+++MNG + +R + + + K ++ + E R+K
Sbjct: 60 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 95
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
D L + F ++ + RD+ T +++G+ F+ F + D A+ M+G + R +++
Sbjct: 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144
Query: 213 RKSKW 217
+ +++
Sbjct: 145 QMARY 149
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISF 187
DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF+ F
Sbjct: 3 DPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHF 58
Query: 188 ANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEA 225
A+++MNG + +R + + +++ R + EA
Sbjct: 59 ETQEAAERAIEKMNGMLLNDRKVFV--GRFKSRKEREA 94
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 35/58 (60%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
+LF G L E ++ L + ++ V+RD + +++G+GF++F++ +++ AA+
Sbjct: 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 86
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
D L + F ++ + RD+ T +++G+ F+ F + D A+ M+G + R +++
Sbjct: 62 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121
Query: 213 RKSKW 217
+ +++
Sbjct: 122 QMARY 126
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV-VRDKRTGKTKGYGFISFANPSDIAAALK 198
++ G L V D + + FS + M + V +KGY ++ F NP + ALK
Sbjct: 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65
Query: 199 EMNGKYVGNRPI 210
M+G + + I
Sbjct: 66 HMDGGQIDGQEI 77
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF +L V +++L K+FS F +R K K Y F+ F + A+ EM
Sbjct: 18 LFVRNLATTVTEEILEKSFSEFGKL--------ERVKKLKDYAFVHFEDRGAAVKAMDEM 69
Query: 201 NGK 203
NGK
Sbjct: 70 NGK 72
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + E ++ + F+ + + D+RTG KGY + + + AA++ +
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84
Query: 201 NGKYVGNRPIKL 212
NG+ + +PI +
Sbjct: 85 NGQDLMGQPISV 96
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + E ++ + F+ + + D+RTG KGY + + + AA++ +
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85
Query: 201 NGKYVGNRPIKL 212
NG+ + +PI +
Sbjct: 86 NGQDLMGQPISV 97
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ LF + E ++ + F+ + + D+RTG KGY + + + AA++
Sbjct: 8 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 67
Query: 199 EMNGKYVGNRPIKL 212
+NG+ + +PI +
Sbjct: 68 GLNGQDLMGQPISV 81
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ LF + E ++ + F+ + + D+RTG KGY + + + AA++
Sbjct: 8 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 67
Query: 199 EMNGKYVGNRPIKL 212
+NG+ + +PI +
Sbjct: 68 GLNGQDLMGQPISV 81
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + E ++ + F+ + + D+RTG KGY + + + AA++ +
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 201 NGKYVGNRPIKL 212
NG+ + +PI +
Sbjct: 70 NGQDLMGQPISV 81
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ LF + E ++ + F+ + + D+RTG KGY + + + AA++
Sbjct: 10 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 69
Query: 199 EMNGKYVGNRPIKL 212
+NG+ + +PI +
Sbjct: 70 GLNGQDLMGQPISV 83
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + E +D + + F + + D+RTG +KGY + + AA + +
Sbjct: 29 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88
Query: 201 NGKYVGNRPIKL 212
NG + + I++
Sbjct: 89 NGAEIMGQTIQV 100
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ L ++ + + FS++ ++++ D+ TG ++G GFI F + A+
Sbjct: 1 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 60
Query: 198 KEMNGK 203
K +NG+
Sbjct: 61 KGLNGQ 66
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
pdb|1RKJ|A Chain A, Solution Structure Of The Complex Formed By The Two N-
Terminal Rna-Binding Domains Of Nucleolin And A Pre-Rrna
Target
Length = 175
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198
+ LF G+L + L A S + N VV D RTG + +G++ F + D+ AL
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL- 71
Query: 199 EMNGKYVGNRPIKLRKSKWQE 219
E+ G V IKL K K ++
Sbjct: 72 ELTGLKVFGNEIKLEKPKGRD 92
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 129 PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA 188
P + + ++F G L + + L + F +F V+RD T +++G+GF++F
Sbjct: 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 75
Query: 189 NPSDIAAALKE 199
+ + + L +
Sbjct: 76 DQAGVDKVLAQ 86
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 145 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG 202
+L + + L + F F S + + +DK TG++KG+ FISF D A A+ ++G
Sbjct: 22 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 79
>pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 165 FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216
FN K +R K + Y F+ F+N D A+K +NGK + PI++ +K
Sbjct: 36 FNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
P + LF G+L + L S + N VV D R G T+ +G++ F + D+
Sbjct: 4 PTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLE 62
Query: 195 AALKEMNGKYVGNRPIKLRKSKWQE 219
AL E+ G V IKL K K ++
Sbjct: 63 KAL-ELTGLKVFGNEIKLEKPKGKD 86
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF + E +D + + F + + D+RTG +KGY + + AA + +
Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
Query: 201 NGKYVGNRPIKL 212
NG + + I++
Sbjct: 135 NGAEIMGQTIQV 146
>pdb|1X4G|A Chain A, Solution Structure Of Rrm Domain In Nucleolysin Tiar
Length = 109
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFI 185
+ED P+N ++CG + + + D ++ + FS F + + R KGY F+
Sbjct: 14 FEDVVNQSSPKN-CTVYCGGIASGLTDQLMRQTFSPFGQ------IMEIRVFPEKGYSFV 66
Query: 186 SFANPSDIAAALKEMNGKYVGNRPIKL 212
F+ A A+ +NG + +K
Sbjct: 67 RFSTHESAAHAIVSVNGTTIEGHVVKC 93
>pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
Length = 282
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 101 LASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFS 160
LA I A ++ +P GQ L+E P N + LF +L E N+ +LS F+
Sbjct: 175 LAPGQIPPGAMPPQQLMP----GQMPPAQPLSENPPN-HILFLTNLPEETNELMLSMLFN 229
Query: 161 RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG-KYVGNRPIKLRKSK 216
+FP F ++V + F+ F N AA + G K N +K+ +K
Sbjct: 230 QFPGFKEVRLVPGRHD-----IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
++F G L + + L + F +F V+RD T +++G+GF++F + + + L +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 35.0 bits (79), Expect = 0.043, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G L + + F +F + A ++ DK T + +G+GF++F + DI + E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEI 60
Query: 201 NGKYVGNRPIKLRKS 215
+ + N+ ++ +K+
Sbjct: 61 HFHEINNKMVECKKA 75
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 162 FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210
F S +V +RTG++KGYGF + A A ++ GK +G R +
Sbjct: 119 FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+++ G+LG L +AFS + + R+ G+ F+ F +P D A++
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRG 56
Query: 200 MNGKYVGNRPIKLRKSKWQER 220
++GK + +++ S R
Sbjct: 57 LDGKVICGSRVRVELSTGMPR 77
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 162 FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210
F S +V +RTG++KGYGF + A A ++ GK +G R +
Sbjct: 119 FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 162 FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210
F S +V +RTG++KGYGF + A A ++ GK +G R +
Sbjct: 117 FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 165
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 171 VRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
V + GK+KGY FI FA+ D AL N + + R I+L
Sbjct: 44 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85
>pdb|2LCW|A Chain A, Solution Structure Of FusTLS RRM DOMAIN
Length = 116
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 167 MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDF 223
M + D+ TGK KG +SF +P AA+ +GK PIK+ S R DF
Sbjct: 44 MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV--SFATRRADF 98
>pdb|1NO8|A Chain A, Solution Structure Of The Nuclear Factor Aly Rbd Domain
Length = 106
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+L +L V+D + + F+ F + A V D R+G++ G + F +D A+K+
Sbjct: 30 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQ 88
Query: 200 MNGKYVGNRPIKLR 213
NG + RP+ ++
Sbjct: 89 YNGVPLDGRPMNIQ 102
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic
Initiation Factor 3b
Length = 105
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 153 DVLSKAFSRFPSFNMAKVVRD---KRTGKTKGYGFISFANPSDIAAALKEMNG 202
+V+ K FS+F K+ D + GKTKGY F+ +A+P+ A+K +G
Sbjct: 36 NVIHKIFSKF-----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 83
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 171 YTKAESYFQ----TGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAA---TRRSPTFV 223
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 224 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 261
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
++ RLF +V + L++ F F K++ G+ F+ F A A
Sbjct: 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKA 81
Query: 197 LKEMNGKYVGNRPIKLRKSKW 217
++E++GK N+P+++ SK
Sbjct: 82 IEEVHGKSFANQPLEVVYSKL 102
>pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANP 190
L+E P N + LF +L E N+ +LS F++FP F ++V + F+ F N
Sbjct: 7 LSENPPN-HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD-----IAFVEFDNE 60
Query: 191 SDIAAALKEMNG-KYVGNRPIKLRKSK 216
AA + G K N +K+ +K
Sbjct: 61 VQAGAARDALQGFKITQNNAMKISFAK 87
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 199 YTKAESYFQ----TGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAA---TRRSPTFV 251
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 252 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 289
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 171 YTKAESYFQ----TGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAA---TRRSPTFV 223
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 224 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 261
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 YHQAQQLFQRDAQTITPEALESVKAALASSDI--EHKAETKKKSIPRKAAGQTWEDPTLA 132
Y +A+ FQ T T + ES++ L + + E+K + + IP A T PT
Sbjct: 198 YTKAESYFQ----TGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAA---TRRSPTFV 250
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
EW + DL N N D + F+ FP+ +VVR+
Sbjct: 251 EWSSANTVF---DLQNRPNTDAPEERFNLFPAVACERVVRN 288
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA 188
L + FS F M +V +D +TG +KG+GF+ F
Sbjct: 32 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 65
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++ G+L + + + FS+F K++ D+ T K KG+GF+ S A K
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLD 63
Query: 201 NGKYVGNRPIKL 212
N ++G R I++
Sbjct: 64 NTDFMG-RTIRV 74
>pdb|2LA6|A Chain A, Solution Nmr Structure Of Rrm Domain Of Rna-Binding
Protein Fus From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6430a
Length = 99
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 167 MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
M + D+ TGK KG +SF +P AA+ +GK PIK+
Sbjct: 50 MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 95
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
L + FS++ +V D+++ +++G+ F+ F N D A + NG + R I++
Sbjct: 29 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 86
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
L + FS++ +V D+++ +++G+ F+ F N D A + NG + R I++
Sbjct: 32 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL ++ D L + F +F +++ ++R +KG+GF++F N +D A ++
Sbjct: 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREK 74
Query: 200 MNGKYVGNRPIKLRKSKWQERTD 222
++G V R I++ + + T+
Sbjct: 75 LHGTVVEGRKIEVNNATARVMTN 97
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL ++ D L + F +F +++ ++R +KG+GF++F N +D A ++
Sbjct: 31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 88
Query: 200 MNGKYVGNRPIKL 212
++G V R I++
Sbjct: 89 LHGTVVEGRKIEV 101
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
L + FS++ +V D+++ +++G+ F+ F N D A + NG + R I++
Sbjct: 63 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120
>pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
Length = 81
Score = 32.3 bits (72), Expect = 0.25, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 153 DVLSKAFSRFPSFNMAKVVRD---KRTGKTKGYGFISFANPSDIAAALKEMNG 202
+V+ K FS+F K+ D + GKTKGY F+ +A+P+ A+K +G
Sbjct: 22 NVIHKIFSKF-----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 69
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
L + FS++ +V D+++ +++G+ F+ F N D A + NG + R I++
Sbjct: 32 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 169 KVVRDKRTGKTKGYGFISFANPS 191
K + DK T K KGYGF+ F +PS
Sbjct: 36 KAILDKTTNKCKGYGFVDFDSPS 58
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
++ RLF +V + L++ F F K++ G+ F+ F A A
Sbjct: 3 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKA 54
Query: 197 LKEMNGKYVGNRPIKLRKSK 216
++E++GK N+P+++ SK
Sbjct: 55 IEEVHGKSFANQPLEVVYSK 74
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N +++F G++ L F R VV+D Y F+ +D AA
Sbjct: 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAA 59
Query: 197 LKEMNGKYVGNRPIKL 212
+ ++NGK V + I +
Sbjct: 60 IAQLNGKEVKGKRINV 75
>pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 169 KVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216
++VR+ KT GY F+ F+N ++ ALK N +Y+G R I++ + K
Sbjct: 40 RIVRNAHGNKT-GYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85
>pdb|2KT5|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hsv-1
Icp27 Peptide
Length = 124
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPS 191
E E +L +L V+D + + F+ F + A V D R+G++ G + F +
Sbjct: 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-RSGRSLGTADVHFERRA 87
Query: 192 DIAAALKEMNGKYVGNRPIKLR 213
D A+K+ G + RP+ ++
Sbjct: 88 DALKAMKQYKGVPLDGRPMDIQ 109
>pdb|2YKA|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hvs
Orf57 Peptide
Length = 124
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPS 191
E E +L +L V+D + + F+ F + A V D R+G++ G + F +
Sbjct: 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-RSGRSLGTADVHFERRA 87
Query: 192 DIAAALKEMNGKYVGNRPIKLR 213
D A+K+ G + RP+ ++
Sbjct: 88 DALKAMKQYKGVPLDGRPMDIQ 109
>pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +V L + FS A ++ DK GK++G G ++F + A+
Sbjct: 18 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 76
Query: 201 NGKYVGNRPIKLR 213
NG+ + +RP+ ++
Sbjct: 77 NGQLLFDRPMHVK 89
>pdb|3ULH|A Chain A, Crystal Structure Of A Rna Binding Domain Of Tho Complex
Subunit 4 Protein (Thoc4) From Homo Sapiens At 2.54 A
Resolution
Length = 107
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+L +L V+D + + F+ F + A V D R+G++ G + F +D A K+
Sbjct: 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAXKQ 89
Query: 200 MNGKYVGNRPIKLR 213
NG + RP ++
Sbjct: 90 YNGVPLDGRPXNIQ 103
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 151 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210
N+D L + FS++ +++DK T K+KG FI F + + +N K + R I
Sbjct: 30 NND-LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88
Query: 211 K 211
K
Sbjct: 89 K 89
>pdb|2F3J|A Chain A, The Solution Structure Of The Ref2-I Mrna Export Factor
(Residues 1-155)
Length = 177
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPS 191
E E +L +L V+D + + F+ F + A V D R+G++ G + F +
Sbjct: 82 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-RSGRSLGTADVHFERRA 140
Query: 192 DIAAALKEMNGKYVGNRPIKL 212
D A+K+ G + RP+ +
Sbjct: 141 DALKAMKQYKGVPLDGRPMDI 161
>pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 176 TGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
GK G GF+ F N +D AAL + +Y+GNR I++
Sbjct: 63 NGKATGEGFVEFRNEADYKAALCR-HKQYMGNRFIQV 98
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 125 TWEDPTLAEWPENDYRLFCGDL--GNEVNDDV 154
TWE P A P YRLFC ++ G E N +V
Sbjct: 27 TWEPPAYANGPVQGYRLFCTEVSTGKEQNIEV 58
>pdb|2DNG|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 4h
Length = 103
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 139 YRLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
Y + G+L N V D+ A + S ++VRDK T K KG+ ++ F + AL
Sbjct: 16 YTAYVGNLPFNTVQGDI--DAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73
Query: 198 KEMNGKYVGNRPIKL 212
+G +G+R +++
Sbjct: 74 T-YDGALLGDRSLRV 87
>pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
Length = 83
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192
E P N LF +L E N+ +LS F++FP F ++V ++ F+ F
Sbjct: 4 EQPPNQI-LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFTTELQ 57
Query: 193 IAAALKEMNG 202
AA + + G
Sbjct: 58 SNAAKEALQG 67
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK---TKGYGFISFANPSDIAAAL 197
LF +L ++ L FS+ + + + K + G+GF+ + P AL
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
Query: 198 KEMNGKYVGNRPIKLRKS 215
K++ G V +++R S
Sbjct: 68 KQLQGHTVDGHKLEVRIS 85
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
E+ + F G L + + L F++F + D TG+++G+GFI F + + +
Sbjct: 9 EDAGKXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEK 68
Query: 196 ALKE----MNGKYV 205
L + ++G+ +
Sbjct: 69 VLDQKEHRLDGRVI 82
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 177 GKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213
GK+KG G + F +P A + MNG + R I +R
Sbjct: 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 176 TGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213
GK+KG G + F +P A + MNG + R I +R
Sbjct: 41 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 78
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 136 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E D R +FC L + L FS +++ D+ + ++KG ++ F +
Sbjct: 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 81
Query: 195 AALKEMNGKYVGNRPIKLRKSKWQ 218
A+ + G+ + PI ++ S+ +
Sbjct: 82 LAIG-LTGQRLLGVPIIVQASQAE 104
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
D L + F ++ + R+ T +G+ F+ F + D A M+G + R +++
Sbjct: 28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87
Query: 213 RKSKWQER 220
+ +++ R
Sbjct: 88 QVARYGRR 95
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE- 199
+F G L + L FS+F + D TG+++G+GF+ F + + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 200 ---MNGKYV 205
+NGK +
Sbjct: 62 EHKLNGKVI 70
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 78 AQQLFQRDAQTITPEALESVK----AALASSDIEHKAETKKKSIPRKAAGQT 125
A +L+ PE L S + A LAS D +H +E +K+I + GQT
Sbjct: 99 ANRLYGEKTYNFLPEFLVSTQKTYGADLASVDFQHASEDARKTINQWVKGQT 150
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
++F G + + + L + F +F ++ D + +G+GFI+F + + A+
Sbjct: 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease
Length = 977
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 82 FQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPE 136
F RD TI E+ +A L D+E++ +KK A G W+ PT + PE
Sbjct: 443 FVRDLGTIESAQAET-EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPE 496
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 113 KKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 172
K + + A Q +DPT L+ +L +++ L F +++R
Sbjct: 9 KASGVQAQMAKQQEQDPT---------NLYISNLPLSMDEQELENMLKPFGQVISTRILR 59
Query: 173 DKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP 209
D +G ++G GF + A + NGK++ P
Sbjct: 60 DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 1003
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 82 FQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPE 136
F RD TI E+ +A L D+E++ +KK A G W+ PT + PE
Sbjct: 469 FVRDLGTIESAQAET-EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPE 522
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 167 MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK 203
M + DK TGK KG +S+ +P AA++ +GK
Sbjct: 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 152 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192
DD+ + S +++R+K +G+++G+ F+ F++ D
Sbjct: 16 DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQD 56
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44
Length = 760
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 82 FQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPE 136
F RD TI E+ +A L D+E++ +KK A G W+ PT + PE
Sbjct: 226 FVRDLGTIESAQAET-EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPE 279
>pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
pdb|3NS6|B Chain B, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
Length = 100
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 154 VLSKAFSRFPSFNMAKVVR-----DKRTGKTKGYGFISFANPSDIAAALKEMNGK 203
VL KA + S KVV D+ TGKTKG+ F+ + +D +K +GK
Sbjct: 24 VLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77
>pdb|2LKZ|A Chain A, Solution Structure Of The Second Rrm Domain Of Rbm5
Length = 95
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 153 DVLSKAFSRFPSF--NMAKVVRDKRTGKTKGYGFISFANPSDIAAALK---------EMN 201
D + A S + S N ++++DK+T + +G+ F+ ++ D + L+ +++
Sbjct: 24 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83
Query: 202 GKYVG 206
GK +G
Sbjct: 84 GKTIG 88
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 123 GQTWEDPTLAEWPENDY--RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTK 180
G+TW +P A NDY +L N++ + +S + SF + +V DK++GKT
Sbjct: 286 GKTWSEPIFA-MKFNDYEEQLVYWPRDNKLKNSQISGS----ASFIDSSIVEDKKSGKTI 340
Query: 181 GYGFISFANPSDIA--------AALKEMNGKYVGNRPIKLRKS 215
++ P+ I + KE+NG Y +KL+K+
Sbjct: 341 ---LLADVMPAGIGNNNANKADSGFKEINGHYY----LKLKKN 376
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 123 GQTWEDPTLAEWPENDY--RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTK 180
G+TW +P A NDY +L N++ + +S + SF + +V DK++GKT
Sbjct: 275 GKTWSEPIFA-MKFNDYEEQLVYWPRDNKLKNSQISGS----ASFIDSSIVEDKKSGKTI 329
Query: 181 GYGFISFANPSDIA--------AALKEMNGKYVGNRPIKLRKS 215
++ P+ I + KE+NG Y +KL+K+
Sbjct: 330 ---LLADVMPAGIGNNNANKADSGFKEINGHYY----LKLKKN 365
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L +V + ++ + FS+ K++ + + Y F+ F D AAAL M
Sbjct: 18 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 75
Query: 201 NGKYVGNRPIKL 212
NG+ + + +K+
Sbjct: 76 NGRKILGKEVKV 87
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RLF G+L ++ ++ + K F ++ + +D KG+GFI + A E
Sbjct: 24 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 77
Query: 200 MNGKYVGNRPIKLR 213
++ + + +++R
Sbjct: 78 LDNMPLRGKQLRVR 91
>pdb|3NS5|A Chain A, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
pdb|3NS5|B Chain B, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
Length = 91
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 154 VLSKAFSRFPSFNMAKVVR-----DKRTGKTKGYGFISFANPSDIAAALKEMNGK 203
VL KA + S KVV D+ TGKTKG+ F+ + +D +K +GK
Sbjct: 24 VLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L V + L F+RF + TG+ +G FI+F N AL +
Sbjct: 28 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 87
Query: 201 NG 202
NG
Sbjct: 88 NG 89
>pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U12 65K PROTEIN
Length = 143
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN-----MAKVVRDKRTGKTKGYGFISFANP 190
E + R++ +L V + L F R+ F+ + +R + G+ KG FI N
Sbjct: 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 102
Query: 191 SDIAAALKEMNGKYVGNRPI 210
A ALKE NG + +P+
Sbjct: 103 KAAAKALKEANGYVLFGKPM 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,038,060
Number of Sequences: 62578
Number of extensions: 218753
Number of successful extensions: 662
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 192
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)