BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025814
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 90/102 (88%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV+RDKRTGK
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 414
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220
TKGYGF+SF +PSD A++EMNGKYVG+RPIKLRKS W++R
Sbjct: 415 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 90/102 (88%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV+RDKRTGK
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 414
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220
TKGYGF+SF +PSD A++EMNGKYVG+RPIKLRKS W++R
Sbjct: 415 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 90/102 (88%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV+RDKRTGK
Sbjct: 329 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 388
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220
TKGYGF+SF +PSD A++EMNGKYVG+RPIKLRKS W++R
Sbjct: 389 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 430
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 90/103 (87%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV+RDKRTGK
Sbjct: 361 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 420
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221
TKGYGF+SF +PSD A++EMNGKYVG+RPIKLRKS W++R
Sbjct: 421 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRN 463
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 99/124 (79%), Gaps = 4/124 (3%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKVVRDKRTGK
Sbjct: 283 RVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGK 342
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPK 238
TKGYGF+SF +P+D A++EMNG+YVG+RPIKLRKS W++R LE + + ++K K
Sbjct: 343 TKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWKDRN----LEVVRKNQKEKKK 398
Query: 239 LSKK 242
L +
Sbjct: 399 LGLR 402
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV+RDKRTGK
Sbjct: 273 RTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGK 332
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKK 236
TKGYGF+SF +P+D A++EMNGKYVG+RPIKLRKS+W++R + R K +KK
Sbjct: 333 TKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDRN--MDVVRKKQREKKK 388
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 178
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV+RDKRTGK
Sbjct: 273 RTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGK 332
Query: 179 TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKK 236
TKGYGF+SF +P+D A +EMNGKYVG+RPIKLRKS+W++R + R K +KK
Sbjct: 333 TKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKLRKSQWKDRNI--DVVRKKQREKKK 388
>sp|Q10355|YDB2_SCHPO Uncharacterized RNA-binding protein C22E12.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC22E12.02 PE=4 SV=1
Length = 219
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 173
K ++ RKA GQ WEDPTL EW N +RLF G+LGN+VND+ L +AFS +PS KVVRD
Sbjct: 5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64
Query: 174 KRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
R GKT+G+GF+SF + A +E NGKY+G+RP+KL
Sbjct: 65 -REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKL 102
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D+ +F GDL ++V D +L F SR+PS AKVV D TG +KGYGF+ F + S+ + A
Sbjct: 176 DFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRA 235
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG Y +R +++
Sbjct: 236 MTEMNGVYCSSRAMRI 251
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
E++ ++ GDL +++ L FS+ K++R+K+TG+++ YGF+ F +
Sbjct: 81 EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEK 140
Query: 196 ALKEMNGKYVGN--RPIKL 212
L+ NG + N +P +L
Sbjct: 141 VLQSYNGTMMPNTEQPFRL 159
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G L +EV D+ L ++F++F K+ KG GF+ F++ S A++++
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSDRSSAQEAIQKL 350
Query: 201 NGKYVGNRPIKL 212
+G +G + ++L
Sbjct: 351 SGAIIGKQAVRL 362
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D +F GDL +V D +L + FS R+PS AKVV D TG++KGYGF+ F + ++ + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 197 LKEMNGKYVGNRPIKL 212
L EMNG Y NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL + +++ L FS + KV+R+K T +++GYGF+ F + + L+
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 201 NG 202
+G
Sbjct: 170 SG 171
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G + +V D+ L + FS+F K+ KG GF+ FA+ A++ +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKGCGFVQFADRKSAEDAIESL 376
Query: 201 NGKYVGNRPIKL 212
NG +G ++L
Sbjct: 377 NGTVIGKNTVRL 388
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D+ +F GDL EV D +LS F + S AKVV D+ TG++KGYGF+ FA+ ++ A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG+Y RP+++
Sbjct: 213 MTEMNGQYCSTRPMRI 228
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL ++++ + F++ AKV+R+K TG+++GYGFI F + S L+
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 201 NG 202
NG
Sbjct: 122 NG 123
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N+ +F G L V DD L F +F K+ KR G F+ +AN + A
Sbjct: 258 NNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHA 311
Query: 197 LKEMNGKYVGNRPIKL 212
L +NG +G + I+L
Sbjct: 312 LSVLNGTQLGGQSIRL 327
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 132 AEWPENDYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANP 190
AE PE + +F GDL +V D +L++ F + + S AKVV D+ TG++KGYGF+ FA+
Sbjct: 168 AEGPE--HTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 191 SDIAAALKEMNGKYVGNRPIK 211
S+ A+ EMNG+Y +RP++
Sbjct: 226 SEQIRAMTEMNGQYCSSRPMR 246
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL ++++ L F AKV+R+K+ G ++GYGFI F N + L+
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 201 NG 202
NG
Sbjct: 142 NG 143
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G + V +D L F +F K+ KR G F+ +AN + AL +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSVL 333
Query: 201 NGKYVGNRPIKL 212
NG +G + I+L
Sbjct: 334 NGTQLGGQSIRL 345
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
DY +F GDL +V D +L + F + +PS AKVV D+ TG+TKGYGF+ F++ S+ A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG RP+++
Sbjct: 214 MTEMNGVPCSTRPMRI 229
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL ++++ L F+ AKV+R+K+TG+ +GYGFI FA+ + L+
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 201 NGKYVGNRPIKLRKSKW 217
N + + P +L + W
Sbjct: 124 NNAPIPSFPDQLFRLNW 140
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N+ +F G L V DD L FS++ K+ KR GF+ F+ S A
Sbjct: 259 NNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEA 312
Query: 197 LKEMNGKYVGNRPIKL 212
L+ +NG +G ++L
Sbjct: 313 LRMLNGVQLGGTTVRL 328
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
++ + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQER 220
A+++M G+++G R I ++ W R
Sbjct: 163 AIQQMGGQWLGGRQI---RTNWATR 184
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISF 187
D +++ N+ ++CG + + + + ++ + FS F +V DK GY F+ F
Sbjct: 203 DEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRF 256
Query: 188 ANPSDIAAALKEMNGKYVGNRPIKLRKSK 216
++ A A+ +NG + +K K
Sbjct: 257 SSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L +V + ++ + FS+ K++ D T Y F+ F AAAL M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 201 NGKYVGNRPIKL 212
NG+ + + +K+
Sbjct: 67 NGRKIMGKEVKV 78
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D+ +F GDL +V D +L + F + S AKVV D TG++KGYGF+ FA S+ A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG Y RP+++
Sbjct: 175 MAEMNGLYCSTRPMRI 190
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL V+++ L+ FS+ KV+R+K TG+ +GYGFI F + + L+
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 201 NGKYVGNRPIKLR 213
NG + + R
Sbjct: 86 NGTQMPGTELTFR 98
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 135 PENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPS 191
PE+D + +L V ++ L KAFS+ K+ TKGYG++ F
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRP 283
Query: 192 DIAAALKEMNGKYVGNRPIKLRKSK 216
A++ M G+ +G + +++ SK
Sbjct: 284 SAEEAVQRMQGQVIGQQAVRISWSK 308
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
++ + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQER 220
A+++M G+++G R I ++ W R
Sbjct: 163 AIQQMGGQWLGGRQI---RTNWATR 184
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++CG + + + + ++ + FS F +V DK GY F+ F + A A+ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 269
Query: 201 NGKYVGNRPIKLRKSK 216
NG + +K K
Sbjct: 270 NGTTIEGHVVKCYWGK 285
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D +F GDL +V+D VL + F+ R+PS AKVV D TG++KGYGF+ F + ++ + A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 197 LKEMNGKYVGNRPIKL------RKSKWQERTDFEALERSKNH 232
+ EMNG + +R +++ R + + ++ +AL + H
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGH 313
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL + +++ L FS + KV+R+K+T +++GYGF+ F + S AL+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 201 NGKYVGN--RPIKL 212
+G + N +P +L
Sbjct: 181 SGVTMPNAEQPFRL 194
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 122 AGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKG 181
AG + ++++ N+ +F G L +V ++ L + FS F K+ KG
Sbjct: 310 AGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKG 363
Query: 182 YGFISFANPSDIAAALKEMNGKYVGNRPIKL---RKSKWQERTD 222
GF+ FAN A+ +NG +G ++L R Q R+D
Sbjct: 364 CGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSD 407
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
++ +F GDL +V D +L + F S + S AKVV D+ TG++KGYGF+ FA+ S+ A
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG RP+++
Sbjct: 235 MTEMNGVLCSTRPMRI 250
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 137 NDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
N+ R L+ GDL ++++ LS F AKV+R+K+TG+++GYGF+ F + +
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAET 140
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNH 232
L+ NG + N R + W E + S H
Sbjct: 141 ILQTYNGTLMPNVEQNFRMN-WASLGAGERRDDSAEH 176
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 93 ALESVKAALASSD---IEHKAETKKKSIPRKAAGQTWEDP--TLAEWPENDYRLFCGDLG 147
A+ + L S+ I A K P+KA T+++P T E N+ +F G L
Sbjct: 234 AMTEMNGVLCSTRPMRIGPAANKKPVGTPQKA---TYQNPQATQGESDPNNTTIFVGGLD 290
Query: 148 NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207
V ++ L + FS + K+V KR GF+ F + AL +NG +G
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRC------GFVQFGTRASAEQALSSLNGTQLGG 344
Query: 208 RPIKL 212
+ I+L
Sbjct: 345 QSIRL 349
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 197 LKEMNGKYVGNRPIKLRKSKWQER 220
+ M G+++G R I ++ W R
Sbjct: 172 IVHMGGQWLGGRQI---RTNWATR 192
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++CG + + + D ++ + FS F + + R KGY F+ F+ A A+ +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQ------IMEIRVFPEKGYSFVRFSTHESAAHAIVSV 277
Query: 201 NGKYVGNRPIKLRKSK 216
NG + +K K
Sbjct: 278 NGTTIEGHVVKCYWGK 293
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGF+SF N D A
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154
Query: 197 LKEMNGKYVGNRPIKLRKSKWQER 220
+ M G+++G R I ++ W R
Sbjct: 155 IVHMGGQWLGGRQI---RTNWATR 175
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++CG + + + D ++ + FS F + + R KGY F+ F+ A A+ +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQ------IMEIRVFPEKGYSFVRFSTHESAAHAIVSV 260
Query: 201 NGKYVGNRPIKLRKSK 216
NG + +K K
Sbjct: 261 NGTTIEGHVVKCYWGK 276
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
++ + LF GDL V+D+ L AF FPS+ V+ D +TG ++GYGF+SF + D
Sbjct: 159 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 218
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQERTD 222
A+ M G+ + RP+++ W + D
Sbjct: 219 AMDSMQGQDLNGRPLRI---NWAAKRD 242
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D L+ G+L + +D+L + F K++ DK K Y F+ + D AL
Sbjct: 74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIAL 132
Query: 198 KEMNGKYVGNRPIKL 212
+ +NGK + N +K+
Sbjct: 133 QTLNGKQIENNIVKI 147
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D +F GDL +V+D++L + FS ++PS AKVV D TG++KGYGF+ F + ++ A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG +R +++
Sbjct: 256 MTEMNGVKCSSRAMRI 271
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 135 PENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPS 191
PE D +F G L + V D+ L + F+ F K+ KG GF+ F N
Sbjct: 297 PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRP 350
Query: 192 DIAAALKEMNGKYVGNRPIKL 212
+ AL+++NG +G + ++L
Sbjct: 351 NAEEALEKLNGTVIGKQTVRL 371
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMA--KVVRDKRTGKTKGYGFISFANPSDIAAALK 198
++ GDL + +++ L+ +F+ + KV+R+K G ++GYGF+ F + L+
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 199 EMNGKYVGN--RPIKL 212
E NG + N +P +L
Sbjct: 163 EFNGTTMPNTDQPFRL 178
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
+Y +F GDL VN+ DV S SR+ S AK++ D +T ++GYGF+ F + +D +A
Sbjct: 185 EYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSA 244
Query: 197 LKEMNGKYVGNRPIKL 212
L EM G+ G+RPI++
Sbjct: 245 LAEMQGQICGDRPIRV 260
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 136 ENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192
EN Y+ L+ G+L V + + + ++ K++R++ TG GY F+ FA+P +
Sbjct: 87 ENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHE 146
Query: 193 IAAALKEMNGKYVGNRPI----KLRKSKW 217
++A+ MN N+PI L K W
Sbjct: 147 ASSAMS-MN-----NKPIPGTNHLFKLNW 169
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G L V+++ L F F K+ KG GF+ F N A+ ++
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAINQL 358
Query: 201 NGKYVGNRPIKLRKSKWQ 218
G +GN I+L + Q
Sbjct: 359 QGYPLGNSRIRLSWGRNQ 376
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
D +F GDL +V+D +L + FS ++PS AKVV D TG++KGYGF+ F + ++ A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 197 LKEMNGKYVGNRPIKL 212
+ EMNG +R +++
Sbjct: 258 MTEMNGVKCSSRAMRI 273
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMA--KVVRDKRTGKTKGYGFISFANPSDIAAALK 198
++ GDL N +++ L+ AF+ + KV+R+K G ++GYGF+ F + L+
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 199 EMNG 202
E NG
Sbjct: 165 EFNG 168
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F G L + V D+ L + FS F K+ KG GF+ F N + AL+++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKL 361
Query: 201 NGKYVGNRPIKL 212
NG +G + ++L
Sbjct: 362 NGTVIGKQTVRL 373
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 89 ITPEA----LESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPE-NDYRLFC 143
++PEA +E + D+ + +KKS + + +E ++ + + L+
Sbjct: 287 VSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYL 346
Query: 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK 203
+L + VND+ L + FS + + KV+ + + G ++G+GF++++NP + A+KEMNGK
Sbjct: 347 KNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGK 405
Query: 204 YVGNRP--IKLRKSKWQERTDFEAL 226
+G +P + L + K + + ++L
Sbjct: 406 MIGRKPLYVALAQRKEERQAHLQSL 430
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 15/103 (14%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++ +L E+ DD L K F ++ + A V++D+ +G ++ +GF++F +P A A+++M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 201 NG-------KYVG------NRPIKLRKSKWQER-TDFEALERS 229
NG YVG +R +LR+ QER + FE L+ S
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGS 342
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL VN+ L F++ + +V RD T ++ GY +++FANP D + A++ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 201 NGKYVGNRPIKLRKS 215
N + +RPI++ S
Sbjct: 120 NYAPIRDRPIRIMLS 134
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +++ L + FS F + KV D G++KGYGF+ F AA+ ++
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 201 NGKYVGNRPI 210
NG + ++ +
Sbjct: 207 NGMLLNDKQV 216
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E +YR F G L ND+ L +AFS+F +K++ D+ TG+++G+GF++F + +
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A++ MNG+ + R I + +++
Sbjct: 62 DAIEGMNGQELDGRNITVNEAQ 83
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+LF G L E N+D L +AF+++ + VV+D+ T +++G+GF++F N D A+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 200 MNGKYVGNRPIKL 212
MNGK V R I++
Sbjct: 66 MNGKSVDGRQIRV 78
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E +YR F G L ND+ L + FS+F +K++ D+ +G+++G+GF++F + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A++EMNGK + R I + +++
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAA 195
N+ +F GDL V + L + F +R+ S + AK+V D+ TG +KGYGF+ F N +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 196 ALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKSV 244
AL EM G ++ R IK+ + Q+ + + + ++N+ L+ ++V
Sbjct: 221 ALSEMQGVFLNGRAIKVGPTSGQQ----QHVSGNNDYNRSSSSLNNENV 265
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPEND-YRLFCGDLGNEVN 151
A+E + D+ + +KKS + + +E + + ++ L+ +L + V+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 344
Query: 152 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP-- 209
D+ L + FS + + +KV+ + + G ++G+GF++++NP + AL EMNGK +G +P
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 403
Query: 210 IKLRKSKWQERTDFEAL 226
I L + K R +AL
Sbjct: 404 IALAQRKEDRRAHLQAL 420
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 16/106 (15%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++ +L E+ +D L K F +F + A V+RD+ +G ++ +GF++F A+A+++M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 201 NGKYVGN-------------RPIKLRKSKWQERTDFEALERSKNHN 233
NG +G+ R +LR+ QER + E+S+ N
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERIN--RFEKSQGAN 333
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +++ L + FS F + KV D TG++KGYGF+ F AA+ ++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 201 NGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKSV 244
NG + ++ + + ++ ER+++ N P+ + V
Sbjct: 197 NGMLMNDKQVFVGHFIRRQ-------ERARDENTPTPRFTNVYV 233
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL +V + L F + +V RD+ ++ GY +I+F+NP+D A++ +
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 201 NGKYVGNRPIKLRKS 215
N + +RPI++ S
Sbjct: 110 NYTPLFDRPIRIMLS 124
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+LF G L + N++ L + FS++ + VV+D+ T +++G+GF++F NP D A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 200 MNGKYVGNRPIKL 212
MNGK V R I++
Sbjct: 66 MNGKAVDGRQIRV 78
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E +YR F G L D L + FS+F +K++ D+ TG+++G+GF++F + +
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A+ EMNGK + R I + +++
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQ 83
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
+YR F G L N++ L +AF+ F +KV+ D+ TG+++G+GF++F++ + A+
Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66
Query: 198 KEMNGKYVGNRPIKLRKSK 216
+ MNGK + R I + +++
Sbjct: 67 ENMNGKELDGRNITVNQAQ 85
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+LF G L E ++ VL FS+F + +++D+ T K++G+ F+++ NP D A +E
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 200 MNGKYVGNRPIKL 212
MNGK + +PIK+
Sbjct: 69 MNGKPLDGKPIKV 81
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 113 KKKSIPRKAAGQTWEDPTLAEWPENDY---RLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 169
K I R+ Q+ P + Y +LF G L +D L +AF+ F A
Sbjct: 6 KLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEAT 65
Query: 170 VVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212
V+ D+ TG+++G+GF+SF+ A+KEM+GK + R I++
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L + ++D+ L K FS F S AKV+ + G++KG+GF+ F++P + A+ EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 201 NGKYVGNRPIKLRKSKWQE 219
NG+ VG++P+ + ++ +E
Sbjct: 354 NGRIVGSKPLYVALAQRKE 372
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++ + G EV+D+ L + FS+F KV+RD GK+KG+GF+S+ D A++EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 201 NGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSK 241
NGK + + I + + Q++ + +A + K K+ ++S+
Sbjct: 252 NGKEISGKIIFV--GRAQKKVERQAELKRKFEQLKQERISR 290
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ GDL ++V + +L + FS +V RD T ++ GY +++F P+D AL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + +PI++ W +R
Sbjct: 73 NFDVIKGKPIRI---MWSQR 89
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 125 TWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 184
+ DP+L + + +F +L +++ L FS F + KVV D+ +KGY F
Sbjct: 87 SQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAF 142
Query: 185 ISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEA 225
+ F A+++MNG + +R K+ +++ R + EA
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKSRKEREA 181
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+F G+L E+++ +L FS F K++RD TG +KGY FI+FA+ AA++
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 200 MNGKYVGNRPIKL 212
MNG+Y+ NRPI +
Sbjct: 162 MNGQYLCNRPITV 174
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D ++ G L +V++ +L + F + + +D+ TG+ +GYGF+ F + D A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 198 KEMNGKYVGNRPIKLRKSKWQERT 221
K MN + +PI++ K+ +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+F G+L E+++ +L FS F K++RD TG +KGY FI+FA+ AA++
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 200 MNGKYVGNRPIKL 212
MNG+Y+ NRPI +
Sbjct: 162 MNGQYLCNRPITV 174
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D ++ G L +V++ +L + F + + +D+ TG+ +GYGF+ F + D A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 198 KEMNGKYVGNRPIKLRKSKWQERT 221
K MN + +PI++ K+ +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
+F G+L E+++ +L FS F K++RD TG +KGY FI+FA+ AA++
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 200 MNGKYVGNRPIKL 212
MNG+Y+ NRPI +
Sbjct: 162 MNGQYLCNRPITV 174
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197
D ++ G L +V++ +L + F + + +D+ TG+ +GYGF+ F + D A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 198 KEMNGKYVGNRPIKLRKSKWQERT 221
K MN + +PI++ K+ +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L + ++D+ L KAFS F + AKV+ + G++KG+GF+ F++P + A+ EM
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 201 NGKYVGNRPIKL----RKSKWQERTDFEALER 228
NG+ V +P+ + RK + Q E ++R
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
++ + G +++D+ L F +F KV+ D+ +GK+KG+GF+SF D A+ EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 201 NGK-------YVGNRPIKLRKSKWQERTDFEALERSK 230
NGK YVG K+ + +RT FE +++ +
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRT-FEQMKQDR 287
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 103 SSDIEHKAETKK-KSIPRKAAGQTW--EDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAF 159
+ D EH +T I K W DP+L + + +F +L +N+ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTV 119
Query: 160 SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219
S F + VV D+ +KGYGF+ F A+K+MNG + R + + + K ++
Sbjct: 120 SAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 220 RTDFEALERSK 230
+ E R+K
Sbjct: 178 EREAELGARAK 188
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
P+ +YR F G L +D L AFS++ +K++ D+ TG+++G+GF++F + +
Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A++ MNG+ + R I + +++
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQ 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%)
Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
P+ +YR F G L ++ L AFS+F +K++ D+ TG+++G+GF++F + +
Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A++ MNG+ + R I + +++
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL+ G L + +D+L F F +++ D TG++KGYGFI+F++ AL++
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 200 MNGKYVGNRPIKLRKSKWQERTD 222
+NG + RP+K+ ERTD
Sbjct: 311 LNGFELAGRPMKV--GHVTERTD 331
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 136 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E D R +FC L + L + FS +++ D+ + ++KG ++ F + S +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A+ + G+ V PI ++ S+
Sbjct: 209 LAIG-LTGQRVLGVPIIVQASQ 229
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
LF +L +EV+D+ L FS F + AK++ D++ GK+KG+GF+ + P + A+ EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 201 NGKYVGNRP--IKLRKSKWQERTDFEALERSKNH 232
N + + +P + L + K R+ EA +++N
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQ 458
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L V + +L + F+ +V RD T ++ GY +++F N D AL E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + RP ++ W +R
Sbjct: 142 NYTLIKGRPCRIM---WSQR 158
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISF 187
DP+L + + +F +L +++ L FS F KV D+ G KGYGF+ F
Sbjct: 159 DPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215
Query: 188 ANPSDIAAALKEMNGKYVGNRPIKL--RKSKWQERTDFEAL 226
+ AA++ +NG + ++ + + S+ + ++ EAL
Sbjct: 216 DSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAA 196
N ++ +L E+ + S F +F +V+D+ K +G+GF+++AN A
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKA 317
Query: 197 LKEMNGK-YVGNRPIKLRKSKWQERTDFEALERSKNHNQKK 236
+ E+N K Y G + R K ER + E K + Q K
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREE----ELRKRYEQMK 354
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL+ G L + +D+L F F +++ D TG++KGYGFI+F++ AL++
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 200 MNGKYVGNRPIKLRKSKWQERTD 222
+NG + RP+K+ ERTD
Sbjct: 311 LNGFELAGRPMKV--GHVTERTD 331
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 136 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E D R +FC L + L + FS +++ D+ + ++KG ++ F + S +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A+ + G+ V PI ++ S+
Sbjct: 209 LAIG-LTGQRVLGVPIIVQASQ 229
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199
RL+ G L + +D+L F F +++ D TG++KGYGFI+F++ AL++
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 200 MNGKYVGNRPIKLRKSKWQERTD 222
+NG + RP+K+ ERTD
Sbjct: 311 LNGFELAGRPMKV--GHVTERTD 331
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 136 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIA 194
E D R +FC L + L + FS +++ D+ + ++KG ++ F + S +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 195 AALKEMNGKYVGNRPIKLRKSK 216
A+ + G+ V PI ++ S+
Sbjct: 209 LAIG-LTGQRVLGVPIIVQASQ 229
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ ++ + +++D L + FS+F + A V++D + +KG+GF+ + P + A+ EM
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 201 NGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQK 235
NG+ +G +P+ + +R D + H QK
Sbjct: 346 NGRMIGTKPLYV---ALAQRKDIRRAQLEMQHQQK 377
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 103 SSDIEHKAETKKKS-IPRKAAGQTW--EDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAF 159
+D E +T + I KA W DP+L + + +F +L ++ L F
Sbjct: 61 GADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGN--VFIKNLDKGIDHKALYDTF 118
Query: 160 SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210
S F + KVV D +KG+GF+ + A+ ++NG + + +
Sbjct: 119 SAFGNILSCKVVTDDGN-SSKGFGFVHYETQESADKAIAKVNGMMINGQKV 168
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
+F +L +V D L + ++ ++ D + GK+KG+GF +F + ++
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENE 248
Query: 201 NGKYVGNRPI 210
NGK +PI
Sbjct: 249 NGKIFHGKPI 258
>sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP6 PE=1 SV=1
Length = 659
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 83 QRDAQTITPEALESVKAA--------LASSDIEHKAETKKKSI-----PRKAAGQTWEDP 129
Q+ +TI+ +AL V+ A L ++++ K KK +K Q +E
Sbjct: 35 QKSFKTISAQALVRVQGAGYKLGDVKLKDAEVKEKNSLKKYDCKNATQEKKEQEQVFE-K 93
Query: 130 TLAEWPENDY--------RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKG 181
T+A+ Y LF G+L + V +++L K F R+ SF AKV RD T K+ G
Sbjct: 94 TVAKGSVQKYITKTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLG 153
Query: 182 YGFISFANPSDIAAALKEMN 201
YG+++F + +D +A KE N
Sbjct: 154 YGYLNFKDKNDAESARKEFN 173
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L +E +DD L F F + +KV+RD +G ++G+GF+ +++P + A+ EM
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEM 390
Query: 201 NGKYVGNRPI 210
NGK +G +P+
Sbjct: 391 NGKMIGTKPL 400
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L V + +L + F+ +V RD T ++ GY ++++ N +D AL+ +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + + ++ W +R
Sbjct: 108 NYSLIKGQSCRI---MWSQR 124
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 149 EVND---DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205
EV D + L K F P+ ++A + RD++ G +KG+GF+++ N A+ E+N K V
Sbjct: 237 EVTDAEFEDLVKPFG--PTISVA-LSRDEK-GVSKGFGFVNYENHESARKAVDELNEKEV 292
Query: 206 GNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKS 243
+ KL + Q +++ EA E K+H +K+ + KS
Sbjct: 293 NGK--KLYAGRAQTKSEREA-ELKKSHEEKRLENEAKS 327
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISF 187
DP L + + + +F +L +++ L F+ F KV D+ GK++G+ F+ +
Sbjct: 125 DPALRKTGQGN--IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHY 181
Query: 188 ANPSDIAAALKEMNGKYVGNRPI--------KLRKSKWQE-RTDF 223
+ AA+K +NG + ++ + K R SK +E R F
Sbjct: 182 STGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF 226
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ +L +E +DD L F F + +KV+RD +G ++G+GF+ +++P + A+ EM
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEM 390
Query: 201 NGKYVGNRPI 210
NGK +G +P+
Sbjct: 391 NGKMIGTKPL 400
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200
L+ G+L V + +L + F+ +V RD T ++ GY ++++ N +D AL+ +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 201 NGKYVGNRPIKLRKSKWQER 220
N + + ++ W +R
Sbjct: 108 NYSLIKGQSCRI---MWSQR 124
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 149 EVND---DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205
EV D + L K F P+ ++A + RD++ G +KG+GF+++ N A+ E+N K V
Sbjct: 237 EVTDAEFEDLVKPFG--PTISVA-LSRDEK-GVSKGFGFVNYENHESARKAVDELNEKEV 292
Query: 206 GNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKS 243
+ KL + Q +++ EA E K+H +K+ + KS
Sbjct: 293 NGK--KLYAGRAQTKSEREA-ELKKSHEEKRLENEAKS 327
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISF 187
DP L + + + +F +L +++ L F+ F KV D+ GK++G+ F+ +
Sbjct: 125 DPALRKTGQGN--IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHY 181
Query: 188 ANPSDIAAALKEMNGKYVGNRPI--------KLRKSKWQE-RTDF 223
+ AA+K +NG + ++ + K R SK +E R F
Sbjct: 182 STGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,070,503
Number of Sequences: 539616
Number of extensions: 4077124
Number of successful extensions: 15399
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 334
Number of HSP's that attempted gapping in prelim test: 13519
Number of HSP's gapped (non-prelim): 2062
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)