Query 025814
Match_columns 247
No_of_seqs 288 out of 2036
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 1.9E-21 4.1E-26 170.6 13.0 140 67-219 132-276 (346)
2 TIGR01645 half-pint poly-U bin 99.9 2.1E-21 4.5E-26 179.4 13.9 151 66-218 131-284 (612)
3 KOG0146 RNA-binding protein ET 99.9 2.3E-22 4.9E-27 164.3 5.7 87 135-221 282-368 (371)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.4E-21 1.6E-25 168.1 14.6 82 138-219 269-350 (352)
5 KOG0226 RNA-binding proteins [ 99.8 4.5E-21 9.8E-26 155.6 8.2 151 71-221 121-273 (290)
6 PLN03134 glycine-rich RNA-bind 99.8 8.9E-20 1.9E-24 141.3 13.2 85 135-219 31-115 (144)
7 KOG0148 Apoptosis-promoting RN 99.8 1.6E-19 3.5E-24 147.8 11.6 149 64-218 84-238 (321)
8 TIGR01622 SF-CC1 splicing fact 99.8 2.3E-19 5E-24 164.0 13.9 149 67-216 114-264 (457)
9 KOG0144 RNA-binding protein CU 99.8 2.1E-19 4.6E-24 155.3 8.1 148 66-226 58-214 (510)
10 KOG0113 U1 small nuclear ribon 99.8 1.1E-18 2.5E-23 144.6 11.5 86 135-220 98-183 (335)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3.4E-18 7.4E-23 158.3 14.8 137 82-218 221-375 (509)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.7E-18 5.8E-23 151.8 12.5 141 66-219 27-172 (352)
13 TIGR01628 PABP-1234 polyadenyl 99.8 1.9E-18 4.1E-23 161.9 11.4 152 67-220 203-366 (562)
14 PF00076 RRM_1: RNA recognitio 99.7 2E-17 4.2E-22 111.9 9.8 70 141-211 1-70 (70)
15 TIGR01628 PABP-1234 polyadenyl 99.7 1.1E-17 2.3E-22 156.9 11.5 141 66-218 24-167 (562)
16 TIGR01659 sex-lethal sex-letha 99.7 1E-17 2.2E-22 147.2 10.5 84 135-218 104-187 (346)
17 TIGR01648 hnRNP-R-Q heterogene 99.7 2.4E-17 5.1E-22 152.3 13.1 127 81-223 179-312 (578)
18 KOG0125 Ataxin 2-binding prote 99.7 1.1E-17 2.3E-22 140.5 8.9 84 133-218 91-174 (376)
19 KOG0122 Translation initiation 99.7 1.8E-17 3.9E-22 134.1 9.5 83 136-218 187-269 (270)
20 KOG0149 Predicted RNA-binding 99.7 1.2E-17 2.7E-22 134.5 7.2 79 138-217 12-90 (247)
21 KOG0127 Nucleolar protein fibr 99.7 7E-17 1.5E-21 143.4 11.8 154 67-221 30-199 (678)
22 TIGR01645 half-pint poly-U bin 99.7 1.9E-17 4.2E-22 153.2 7.6 81 136-216 105-185 (612)
23 KOG0131 Splicing factor 3b, su 99.7 3E-17 6.6E-22 127.4 6.8 143 67-221 34-180 (203)
24 PF14259 RRM_6: RNA recognitio 99.7 6.5E-16 1.4E-20 104.8 10.3 70 141-211 1-70 (70)
25 KOG0145 RNA-binding protein EL 99.7 9.5E-17 2.1E-21 131.0 6.8 139 67-218 66-209 (360)
26 KOG0126 Predicted RNA-binding 99.7 1.4E-17 3E-22 129.2 1.0 80 136-215 33-112 (219)
27 KOG0117 Heterogeneous nuclear 99.7 2.6E-16 5.6E-21 136.9 8.9 97 135-231 80-177 (506)
28 PLN03213 repressor of silencin 99.7 6.6E-16 1.4E-20 136.0 11.1 80 136-219 8-89 (759)
29 KOG0107 Alternative splicing f 99.7 2.9E-16 6.3E-21 121.3 7.8 78 138-220 10-87 (195)
30 PLN03120 nucleic acid binding 99.7 6.9E-16 1.5E-20 128.2 10.0 76 138-217 4-79 (260)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.7E-15 3.7E-20 139.4 13.5 142 66-218 26-174 (481)
32 KOG0148 Apoptosis-promoting RN 99.6 5.6E-16 1.2E-20 127.2 7.6 83 137-219 61-143 (321)
33 KOG4207 Predicted splicing fac 99.6 4E-16 8.6E-21 123.5 6.0 82 139-220 14-95 (256)
34 KOG0117 Heterogeneous nuclear 99.6 1.2E-15 2.6E-20 132.8 9.4 129 80-224 204-337 (506)
35 KOG0111 Cyclophilin-type pepti 99.6 2.9E-16 6.2E-21 125.4 4.6 84 136-219 8-91 (298)
36 TIGR01648 hnRNP-R-Q heterogene 99.6 3.4E-15 7.4E-20 138.0 11.7 81 135-216 55-136 (578)
37 KOG0123 Polyadenylate-binding 99.6 3.3E-15 7.1E-20 132.1 11.0 131 65-219 21-154 (369)
38 KOG0147 Transcriptional coacti 99.6 6E-16 1.3E-20 137.8 6.2 149 67-217 204-357 (549)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7.8E-15 1.7E-19 135.0 13.2 133 84-218 313-480 (481)
40 KOG0121 Nuclear cap-binding pr 99.6 1.9E-15 4.1E-20 111.0 7.0 81 136-216 34-114 (153)
41 KOG0145 RNA-binding protein EL 99.6 3E-15 6.4E-20 122.4 8.8 85 135-219 38-122 (360)
42 KOG0131 Splicing factor 3b, su 99.6 1.1E-15 2.4E-20 118.7 5.9 81 136-216 7-87 (203)
43 KOG0124 Polypyrimidine tract-b 99.6 8.6E-16 1.9E-20 130.8 5.7 151 64-216 135-288 (544)
44 smart00362 RRM_2 RNA recogniti 99.6 9.7E-15 2.1E-19 98.0 9.3 72 140-213 1-72 (72)
45 PLN03121 nucleic acid binding 99.6 8.3E-15 1.8E-19 120.0 10.3 76 137-216 4-79 (243)
46 KOG0108 mRNA cleavage and poly 99.6 3.4E-15 7.3E-20 133.4 8.5 83 139-221 19-101 (435)
47 KOG0109 RNA-binding protein LA 99.6 3.9E-15 8.4E-20 123.4 5.9 114 84-220 36-152 (346)
48 KOG4205 RNA-binding protein mu 99.6 4.7E-15 1E-19 127.2 6.5 147 67-221 31-179 (311)
49 smart00360 RRM RNA recognition 99.6 2.1E-14 4.5E-19 96.0 8.4 71 143-213 1-71 (71)
50 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-14 4.6E-19 131.3 11.1 82 135-217 86-167 (457)
51 COG0724 RNA-binding proteins ( 99.6 2.2E-14 4.7E-19 120.7 9.9 79 138-216 115-193 (306)
52 KOG0130 RNA-binding protein RB 99.5 1.1E-14 2.4E-19 107.9 6.0 82 136-217 70-151 (170)
53 TIGR01642 U2AF_lg U2 snRNP aux 99.5 7E-14 1.5E-18 129.5 12.7 150 67-216 320-500 (509)
54 KOG0127 Nucleolar protein fibr 99.5 1.1E-13 2.4E-18 123.3 11.2 86 135-220 289-380 (678)
55 KOG0124 Polypyrimidine tract-b 99.5 1.2E-14 2.7E-19 123.8 4.7 77 139-215 114-190 (544)
56 cd00590 RRM RRM (RNA recogniti 99.5 2.1E-13 4.5E-18 92.0 9.9 74 140-214 1-74 (74)
57 KOG0114 Predicted RNA-binding 99.5 1.2E-13 2.7E-18 97.9 8.5 81 135-218 15-95 (124)
58 KOG0415 Predicted peptidyl pro 99.5 6.4E-14 1.4E-18 119.0 6.4 88 131-218 232-319 (479)
59 KOG0110 RNA-binding protein (R 99.5 9.5E-14 2.1E-18 127.1 7.9 136 80-219 556-694 (725)
60 smart00361 RRM_1 RNA recogniti 99.5 3.2E-13 7E-18 91.7 8.1 62 152-213 2-70 (70)
61 KOG0144 RNA-binding protein CU 99.4 1.8E-13 3.9E-18 118.9 6.6 85 135-219 421-505 (510)
62 KOG0105 Alternative splicing f 99.4 3E-13 6.4E-18 105.6 6.4 81 135-218 3-83 (241)
63 PF13893 RRM_5: RNA recognitio 99.4 2.5E-12 5.4E-17 83.4 8.3 56 155-215 1-56 (56)
64 KOG0109 RNA-binding protein LA 99.4 8.6E-13 1.9E-17 109.6 6.1 72 140-219 4-75 (346)
65 KOG4208 Nucleolar RNA-binding 99.4 2.1E-12 4.5E-17 102.6 7.9 81 138-218 49-130 (214)
66 KOG0123 Polyadenylate-binding 99.3 8.8E-12 1.9E-16 110.4 8.1 142 67-217 101-245 (369)
67 KOG4212 RNA-binding protein hn 99.3 1.8E-11 3.8E-16 106.9 9.2 85 136-221 42-127 (608)
68 KOG4206 Spliceosomal protein s 99.3 2.2E-11 4.7E-16 98.2 8.3 79 140-221 11-93 (221)
69 KOG0146 RNA-binding protein ET 99.2 1.8E-11 3.8E-16 100.8 7.4 84 135-219 16-102 (371)
70 KOG4205 RNA-binding protein mu 99.2 9.7E-12 2.1E-16 106.9 5.0 84 137-221 5-88 (311)
71 KOG1548 Transcription elongati 99.2 1.1E-10 2.3E-15 99.4 9.3 84 138-222 134-225 (382)
72 KOG4661 Hsp27-ERE-TATA-binding 99.2 4.8E-11 1E-15 107.2 7.4 81 136-216 403-483 (940)
73 KOG0153 Predicted RNA-binding 99.1 3.2E-10 7E-15 96.5 8.0 75 137-217 227-302 (377)
74 KOG0132 RNA polymerase II C-te 99.1 2.9E-10 6.3E-15 105.4 7.5 77 138-220 421-497 (894)
75 KOG0110 RNA-binding protein (R 99.1 4.4E-10 9.5E-15 103.4 8.5 78 139-216 516-596 (725)
76 KOG4209 Splicing factor RNPS1, 99.1 2.9E-10 6.2E-15 94.4 6.1 81 137-218 100-180 (231)
77 KOG4212 RNA-binding protein hn 99.0 5.1E-10 1.1E-14 97.8 6.5 76 135-215 533-608 (608)
78 KOG0533 RRM motif-containing p 99.0 2.4E-09 5.2E-14 88.9 8.3 81 138-219 83-163 (243)
79 KOG0151 Predicted splicing reg 98.9 1.9E-09 4.2E-14 99.1 7.7 86 132-217 168-256 (877)
80 KOG0116 RasGAP SH3 binding pro 98.9 2.7E-09 6E-14 95.2 7.7 83 138-221 288-370 (419)
81 KOG4660 Protein Mei2, essentia 98.9 2.2E-09 4.9E-14 96.5 5.7 70 137-211 74-143 (549)
82 KOG1457 RNA binding protein (c 98.9 1.9E-08 4.2E-13 81.1 9.6 86 135-220 31-120 (284)
83 KOG4211 Splicing factor hnRNP- 98.8 2.1E-08 4.5E-13 89.2 9.6 132 81-217 46-181 (510)
84 KOG0106 Alternative splicing f 98.8 6.3E-09 1.4E-13 84.7 4.1 71 140-218 3-73 (216)
85 KOG0120 Splicing factor U2AF, 98.8 1.1E-08 2.3E-13 92.7 5.8 138 80-217 219-368 (500)
86 KOG4454 RNA binding protein (R 98.8 2.8E-09 6.1E-14 85.6 1.7 82 135-218 6-87 (267)
87 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.7E-12 67.2 8.8 81 139-219 2-88 (97)
88 KOG4210 Nuclear localization s 98.7 4.5E-08 9.9E-13 83.9 6.7 143 75-221 121-267 (285)
89 KOG4211 Splicing factor hnRNP- 98.6 1.7E-07 3.6E-12 83.5 8.6 81 135-219 7-87 (510)
90 KOG0106 Alternative splicing f 98.6 6.1E-08 1.3E-12 79.0 4.5 125 83-215 34-168 (216)
91 KOG4849 mRNA cleavage factor I 98.5 1.1E-07 2.5E-12 81.2 5.4 96 136-231 78-175 (498)
92 KOG4206 Spliceosomal protein s 98.5 1.3E-06 2.8E-11 70.8 10.6 132 80-216 48-220 (221)
93 KOG1995 Conserved Zn-finger pr 98.4 2.9E-07 6.2E-12 79.2 3.7 84 137-220 65-156 (351)
94 KOG0147 Transcriptional coacti 98.3 2.1E-07 4.5E-12 83.9 1.9 80 136-216 177-256 (549)
95 COG5175 MOT2 Transcriptional r 98.3 1.1E-06 2.4E-11 75.0 6.1 85 139-223 115-208 (480)
96 KOG1190 Polypyrimidine tract-b 98.3 2.7E-06 5.9E-11 74.3 8.4 76 138-218 297-373 (492)
97 KOG0105 Alternative splicing f 98.3 4.2E-06 9.1E-11 65.9 8.4 123 84-213 45-185 (241)
98 KOG1548 Transcription elongati 98.3 7.7E-06 1.7E-10 70.1 10.4 134 84-221 186-355 (382)
99 KOG1457 RNA binding protein (c 98.3 8E-07 1.7E-11 71.9 4.0 65 137-205 209-273 (284)
100 PF11608 Limkain-b1: Limkain b 98.2 5.2E-06 1.1E-10 57.2 5.5 67 140-216 4-75 (90)
101 PF08777 RRM_3: RNA binding mo 98.1 4.2E-06 9.2E-11 61.2 4.2 76 139-220 2-82 (105)
102 KOG1456 Heterogeneous nuclear 98.0 4.4E-05 9.6E-10 66.2 9.3 126 83-219 66-200 (494)
103 KOG3152 TBP-binding protein, a 98.0 3.9E-06 8.5E-11 69.2 2.4 71 139-209 75-157 (278)
104 KOG0120 Splicing factor U2AF, 98.0 2.9E-05 6.3E-10 70.7 7.8 142 74-215 321-489 (500)
105 KOG0129 Predicted RNA-binding 97.8 0.00016 3.5E-09 65.2 10.2 118 81-198 300-431 (520)
106 KOG1456 Heterogeneous nuclear 97.8 0.00011 2.3E-09 63.9 8.5 78 136-218 285-363 (494)
107 KOG0128 RNA-binding protein SA 97.8 1.2E-05 2.7E-10 76.0 2.7 110 80-217 705-814 (881)
108 KOG1365 RNA-binding protein Fu 97.8 5.8E-05 1.3E-09 65.7 6.6 135 82-217 204-361 (508)
109 PF08952 DUF1866: Domain of un 97.7 0.0002 4.3E-09 54.8 8.2 74 135-217 24-106 (146)
110 KOG4307 RNA binding protein RB 97.7 0.00012 2.6E-09 68.1 7.7 74 140-214 869-943 (944)
111 KOG2314 Translation initiation 97.7 0.00011 2.5E-09 66.8 7.1 77 138-215 58-141 (698)
112 KOG0115 RNA-binding protein p5 97.6 7.6E-05 1.7E-09 61.7 4.8 101 92-213 5-109 (275)
113 KOG2253 U1 snRNP complex, subu 97.6 9.2E-05 2E-09 68.6 4.9 66 140-214 42-107 (668)
114 KOG1190 Polypyrimidine tract-b 97.5 0.00054 1.2E-08 60.3 9.0 130 84-217 335-490 (492)
115 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00079 1.7E-08 48.6 7.6 78 138-217 6-91 (100)
116 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00036 7.8E-09 44.3 4.9 51 140-197 3-53 (53)
117 KOG1855 Predicted RNA-binding 97.3 0.00024 5.1E-09 62.8 3.7 70 137-206 230-312 (484)
118 KOG0129 Predicted RNA-binding 97.3 0.00099 2.1E-08 60.3 7.4 62 138-200 259-326 (520)
119 KOG1365 RNA-binding protein Fu 97.2 0.00082 1.8E-08 58.7 5.9 134 80-216 98-241 (508)
120 PF08675 RNA_bind: RNA binding 97.1 0.0037 8.1E-08 43.1 7.5 57 137-202 8-64 (87)
121 KOG2193 IGF-II mRNA-binding pr 97.1 0.00054 1.2E-08 60.5 4.0 75 140-220 3-78 (584)
122 KOG0128 RNA-binding protein SA 97.0 5.3E-05 1.2E-09 71.9 -2.9 77 137-213 666-742 (881)
123 KOG1996 mRNA splicing factor [ 96.9 0.003 6.5E-08 53.5 6.7 63 153-215 301-364 (378)
124 KOG0112 Large RNA-binding prot 96.8 0.0015 3.2E-08 62.7 4.8 79 137-221 454-534 (975)
125 KOG1924 RhoA GTPase effector D 96.7 0.0064 1.4E-07 57.8 8.1 10 28-37 555-564 (1102)
126 KOG4676 Splicing factor, argin 96.6 0.0036 7.7E-08 55.0 5.4 76 139-215 8-86 (479)
127 KOG4307 RNA binding protein RB 96.6 0.00089 1.9E-08 62.6 1.6 79 136-215 432-511 (944)
128 KOG2202 U2 snRNP splicing fact 96.6 0.00094 2E-08 55.4 1.4 54 161-215 92-145 (260)
129 KOG2416 Acinus (induces apopto 96.6 0.0022 4.9E-08 59.0 3.8 75 137-217 443-521 (718)
130 COG0724 RNA-binding proteins ( 96.5 0.0075 1.6E-07 50.1 6.6 131 67-197 140-284 (306)
131 KOG2068 MOT2 transcription fac 96.5 0.0011 2.3E-08 57.2 1.3 86 139-224 78-169 (327)
132 KOG0112 Large RNA-binding prot 96.4 0.00066 1.4E-08 65.0 -0.5 80 135-215 369-448 (975)
133 PF10309 DUF2414: Protein of u 96.2 0.025 5.3E-07 37.0 6.2 53 140-200 7-62 (62)
134 PF03880 DbpA: DbpA RNA bindin 95.9 0.041 8.8E-07 37.4 6.5 67 140-215 2-74 (74)
135 KOG0111 Cyclophilin-type pepti 95.9 0.0077 1.7E-07 49.1 3.2 58 64-121 32-92 (298)
136 KOG4454 RNA binding protein (R 95.6 0.0037 8.1E-08 50.8 0.2 93 86-205 51-150 (267)
137 KOG4285 Mitotic phosphoprotein 95.5 0.09 2E-06 44.9 8.1 69 138-214 197-266 (350)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.038 8.3E-07 44.2 5.6 81 137-217 6-97 (176)
139 PF07576 BRAP2: BRCA1-associat 95.4 0.23 4.9E-06 36.5 9.2 66 140-207 15-81 (110)
140 KOG2135 Proteins containing th 95.3 0.012 2.7E-07 52.9 2.7 74 137-217 371-445 (526)
141 KOG2591 c-Mpl binding protein, 95.0 0.068 1.5E-06 49.2 6.4 70 138-214 175-248 (684)
142 KOG2193 IGF-II mRNA-binding pr 94.6 0.0026 5.6E-08 56.4 -3.5 117 80-215 33-154 (584)
143 PF04847 Calcipressin: Calcipr 94.1 0.16 3.4E-06 40.9 6.0 62 151-218 8-71 (184)
144 KOG4210 Nuclear localization s 93.9 0.028 6.1E-07 48.4 1.4 79 137-215 87-165 (285)
145 KOG4660 Protein Mei2, essentia 93.2 0.17 3.8E-06 46.5 5.4 82 138-219 388-474 (549)
146 PLN03134 glycine-rich RNA-bind 93.1 0.068 1.5E-06 41.3 2.3 57 65-121 57-116 (144)
147 PF15023 DUF4523: Protein of u 92.1 0.53 1.2E-05 36.0 5.8 68 139-214 87-158 (166)
148 KOG0125 Ataxin 2-binding prote 92.0 0.12 2.5E-06 44.8 2.4 44 82-125 134-180 (376)
149 KOG0804 Cytoplasmic Zn-finger 91.8 0.49 1.1E-05 42.7 6.2 67 138-207 74-142 (493)
150 KOG2318 Uncharacterized conser 91.7 0.55 1.2E-05 43.6 6.6 80 135-214 171-304 (650)
151 PF11767 SET_assoc: Histone ly 91.3 1.6 3.4E-05 29.0 6.8 55 149-212 11-65 (66)
152 KOG4574 RNA-binding protein (c 89.8 0.26 5.6E-06 47.7 2.8 75 138-218 298-374 (1007)
153 KOG0149 Predicted RNA-binding 88.7 0.26 5.5E-06 40.8 1.7 50 66-115 36-87 (247)
154 KOG4207 Predicted splicing fac 87.8 0.31 6.8E-06 39.6 1.7 51 67-117 38-91 (256)
155 KOG0226 RNA-binding proteins [ 87.8 1.3 2.8E-05 37.2 5.2 96 116-212 74-172 (290)
156 KOG4676 Splicing factor, argin 87.3 0.076 1.7E-06 46.9 -2.2 69 139-212 152-220 (479)
157 KOG0122 Translation initiation 85.6 0.51 1.1E-05 39.3 1.8 50 64-113 211-263 (270)
158 KOG4483 Uncharacterized conser 85.5 3.2 6.8E-05 37.2 6.7 54 138-198 391-445 (528)
159 smart00596 PRE_C2HC PRE_C2HC d 77.2 3.7 8E-05 27.4 3.2 62 153-217 2-64 (69)
160 PF07530 PRE_C2HC: Associated 76.3 5 0.00011 26.7 3.8 63 153-218 2-65 (68)
161 smart00361 RRM_1 RNA recogniti 76.2 1.6 3.5E-05 28.8 1.4 45 66-110 16-66 (70)
162 KOG4410 5-formyltetrahydrofola 74.9 14 0.0003 31.8 6.8 57 139-201 331-395 (396)
163 PF07292 NID: Nmi/IFP 35 domai 70.2 2.8 6.1E-05 29.4 1.5 69 87-159 1-73 (88)
164 KOG4019 Calcineurin-mediated s 63.9 4.8 0.0001 32.1 1.8 74 140-219 12-91 (193)
165 KOG3671 Actin regulatory prote 63.3 44 0.00095 31.0 7.9 28 141-168 484-511 (569)
166 KOG4365 Uncharacterized conser 63.3 1.5 3.2E-05 39.7 -1.3 77 140-217 5-81 (572)
167 PF09707 Cas_Cas2CT1978: CRISP 61.9 19 0.00041 25.2 4.3 46 140-188 27-72 (86)
168 PF03468 XS: XS domain; Inter 61.9 9.6 0.00021 28.2 3.0 45 150-197 29-74 (116)
169 PF10567 Nab6_mRNP_bdg: RNA-re 60.3 23 0.00049 30.6 5.3 79 138-216 15-106 (309)
170 PRK11558 putative ssRNA endonu 59.5 16 0.00035 26.1 3.7 47 140-189 29-75 (97)
171 KOG0130 RNA-binding protein RB 59.2 7.7 0.00017 29.6 2.1 48 67-114 97-147 (170)
172 KOG2891 Surface glycoprotein [ 57.1 8.2 0.00018 33.0 2.1 69 136-204 147-246 (445)
173 KOG0113 U1 small nuclear ribon 56.6 7 0.00015 33.7 1.7 51 67-117 126-179 (335)
174 KOG0108 mRNA cleavage and poly 55.7 8.2 0.00018 35.4 2.1 55 67-121 43-100 (435)
175 KOG4008 rRNA processing protei 53.2 7.8 0.00017 32.3 1.4 32 137-168 39-70 (261)
176 PRK11901 hypothetical protein; 52.7 49 0.0011 29.0 6.2 66 133-203 240-307 (327)
177 KOG2295 C2H2 Zn-finger protein 52.0 2.3 5E-05 39.5 -2.0 69 138-206 231-299 (648)
178 KOG0107 Alternative splicing f 51.2 10 0.00022 30.2 1.7 50 67-121 35-87 (195)
179 COG5178 PRP8 U5 snRNP spliceos 47.3 39 0.00085 34.9 5.3 29 140-168 74-102 (2365)
180 PF15513 DUF4651: Domain of un 45.3 42 0.00091 21.9 3.6 18 153-170 9-26 (62)
181 PLN03120 nucleic acid binding 44.4 15 0.00032 31.2 1.8 48 67-117 29-78 (260)
182 COG5638 Uncharacterized conser 41.4 82 0.0018 28.6 5.9 33 182-214 260-294 (622)
183 COG5193 LHP1 La protein, small 39.7 14 0.0003 33.2 1.0 60 139-198 175-244 (438)
184 PF11491 DUF3213: Protein of u 39.1 1E+02 0.0023 21.3 4.9 66 141-213 3-72 (88)
185 TIGR01873 cas_CT1978 CRISPR-as 39.1 28 0.00062 24.3 2.3 47 140-189 27-74 (87)
186 KOG4672 Uncharacterized conser 37.2 3.3E+02 0.0071 24.9 9.6 9 151-159 471-479 (487)
187 PF03276 Gag_spuma: Spumavirus 36.3 1.4E+02 0.003 28.3 6.7 10 202-211 427-436 (582)
188 KOG4213 RNA-binding protein La 35.6 49 0.0011 26.5 3.3 55 139-199 112-169 (205)
189 KOG1295 Nonsense-mediated deca 35.5 60 0.0013 29.1 4.2 67 139-205 8-77 (376)
190 KOG0126 Predicted RNA-binding 34.6 4.2 9.1E-05 32.6 -2.7 50 67-116 60-112 (219)
191 PF03439 Spt5-NGN: Early trans 30.2 64 0.0014 22.1 2.9 27 178-204 42-68 (84)
192 KOG4840 Predicted hydrolases o 30.1 77 0.0017 26.6 3.7 75 139-217 38-117 (299)
193 KOG4672 Uncharacterized conser 29.4 1.9E+02 0.0042 26.3 6.3 6 197-202 480-485 (487)
194 PLN03213 repressor of silencin 29.0 26 0.00057 32.5 1.0 49 66-118 34-87 (759)
195 KOG4208 Nucleolar RNA-binding 29.0 44 0.00095 27.4 2.1 36 74-109 82-120 (214)
196 KOG4849 mRNA cleavage factor I 27.5 1.9E+02 0.0041 25.8 5.8 8 151-158 358-365 (498)
197 PF02714 DUF221: Domain of unk 26.9 44 0.00094 29.0 2.0 37 183-221 1-37 (325)
198 PF00398 RrnaAD: Ribosomal RNA 26.9 65 0.0014 27.2 3.0 31 138-168 97-129 (262)
199 PF08206 OB_RNB: Ribonuclease 26.4 23 0.0005 22.5 0.1 37 179-216 7-44 (58)
200 PRK11634 ATP-dependent RNA hel 25.9 2.4E+02 0.0052 27.3 6.9 69 139-216 487-561 (629)
201 PF13046 DUF3906: Protein of u 24.6 1E+02 0.0022 20.2 2.8 34 150-185 30-63 (64)
202 KOG3702 Nuclear polyadenylated 24.3 41 0.0009 32.2 1.4 72 140-212 513-584 (681)
203 KOG0260 RNA polymerase II, lar 24.3 2.8E+02 0.0061 29.1 7.0 60 1-60 1504-1570(1605)
204 COG5178 PRP8 U5 snRNP spliceos 24.0 78 0.0017 32.9 3.2 11 138-148 107-117 (2365)
205 KOG3424 40S ribosomal protein 23.6 2.8E+02 0.006 20.7 5.2 45 149-194 34-83 (132)
206 PF05189 RTC_insert: RNA 3'-te 23.4 1.3E+02 0.0029 21.2 3.7 48 140-187 12-64 (103)
207 smart00195 DSPc Dual specifici 23.3 2.7E+02 0.0059 20.3 5.6 78 140-221 7-92 (138)
208 PF11823 DUF3343: Protein of u 22.6 1.1E+02 0.0024 20.2 2.9 23 182-204 3-25 (73)
209 COG0030 KsgA Dimethyladenosine 22.5 1.2E+02 0.0027 25.7 3.8 32 140-171 97-128 (259)
210 PF08544 GHMP_kinases_C: GHMP 22.5 2.4E+02 0.0051 18.5 5.2 42 153-200 37-79 (85)
211 PF04026 SpoVG: SpoVG; InterP 22.3 1.9E+02 0.0041 20.0 4.1 25 165-189 3-27 (84)
212 PLN03121 nucleic acid binding 21.6 59 0.0013 27.4 1.6 46 67-115 30-77 (243)
213 KOG4661 Hsp27-ERE-TATA-binding 20.8 80 0.0017 30.0 2.4 53 67-119 430-485 (940)
214 PF04127 DFP: DNA / pantothena 20.7 3E+02 0.0066 22.0 5.6 59 140-200 20-79 (185)
215 PF11411 DNA_ligase_IV: DNA li 20.2 70 0.0015 18.4 1.3 16 148-163 19-34 (36)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=1.9e-21 Score=170.64 Aligned_cols=140 Identities=16% Similarity=0.294 Sum_probs=115.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
+.|..+.+..+..+..+++++||+|++.++|.+|+.. ..+.++.+.+..+.+... ....++|||
T Consensus 132 G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~-------------~~~~~~lfV 198 (346)
T TIGR01659 132 GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE-------------SIKDTNLYV 198 (346)
T ss_pred CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc-------------ccccceeEE
Confidence 5566666666666777899999999999999999853 466777776655432211 123458999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEccccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRKSKWQE 219 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a~~k~ 219 (247)
+||++++++++|+++|++||.|+.++|++|+.+|+++|||||+|.+.++|++||+.||+..+.| +.|+|++++.+.
T Consensus 199 ~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 199 TNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred eCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999999999999999999999999999999999999999999999999999998866 789999887543
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=2.1e-21 Score=179.37 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=121.9
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEE
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLF 142 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lf 142 (247)
+|.+..+....+..+..++|++||+|++.+.+..|+. +..+.++.+.+............ ...........++||
T Consensus 131 fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~--~~~~~~~~~~~~rLf 208 (612)
T TIGR01645 131 FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPI--IDMVQEEAKKFNRIY 208 (612)
T ss_pred cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccc--cccccccccccceEE
Confidence 4777777666777778899999999999999999985 45678888877643322111100 000111123456899
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 143 CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 143 V~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
|+||++++++++|+++|+.||.|.+++|.+|+.+|.++|||||+|.+.++|.+||..|||..|+|+.|+|.++...
T Consensus 209 VgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 209 VASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred eecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988753
No 3
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.3e-22 Score=164.30 Aligned_cols=87 Identities=31% Similarity=0.481 Sum_probs=84.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.+++|+|||..||.++.+.||.++|-.||.|++.+|..|+.|+.+||||||.|+++.+++.||..|||+.|+.++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 025814 215 SKWQERT 221 (247)
Q Consensus 215 a~~k~~~ 221 (247)
.++|+.+
T Consensus 362 KRPkdan 368 (371)
T KOG0146|consen 362 KRPKDAN 368 (371)
T ss_pred cCccccC
Confidence 9988754
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=7.4e-21 Score=168.14 Aligned_cols=82 Identities=30% Similarity=0.542 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
+.+|||+||++++++++|+++|++||.|.+++|++|+.||.++|||||+|.+.++|.+||..|||..|+||.|+|.+...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 025814 218 QE 219 (247)
Q Consensus 218 k~ 219 (247)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 64
No 5
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.84 E-value=4.5e-21 Score=155.62 Aligned_cols=151 Identities=60% Similarity=0.986 Sum_probs=123.1
Q ss_pred ccccccchhhhcCCCceeeCccCHHHHHHHHhcCccchhhhhhcccc--cccccCCCCCCCCCCCCCCCCcEEEEcCCCC
Q 025814 71 SLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSI--PRKAAGQTWEDPTLAEWPENDYRLFCGDLGN 148 (247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~ 148 (247)
...+.......+..+-+-+..+..++.+..+............+... -|...+..|.++.+.+|.+++++||+|.|..
T Consensus 121 ~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgN 200 (290)
T KOG0226|consen 121 SEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGN 200 (290)
T ss_pred ccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccc
Confidence 33334444555566666666666666665555443333333333333 4888999999999999999999999999999
Q ss_pred CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 149 EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 149 ~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
+++++.|-+.|.+|-.....++++|+.||+++|||||.|.+..++.+|+++|||..++.+.|+++.+.|++|+
T Consensus 201 evnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wkeRn 273 (290)
T KOG0226|consen 201 EVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKERN 273 (290)
T ss_pred cccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=8.9e-20 Score=141.26 Aligned_cols=85 Identities=32% Similarity=0.559 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|++||.|.++.|+.|+.|++++|||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-19 Score=147.80 Aligned_cols=149 Identities=15% Similarity=0.260 Sum_probs=120.5
Q ss_pred CCCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC---ccchhhhhhcccccccc---cCCCCCCCCCCCCCCC
Q 025814 64 APVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS---DIEHKAETKKKSIPRKA---AGQTWEDPTLAEWPEN 137 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~---~~~~~~~~~~~~~~r~~---~~~~~~~~~~~~~~~~ 137 (247)
+|||.|....+.+|.++.-++|++||.|-.-++|+.|+..+ =+.+|.++..=+..+.. .+...-+.-......+
T Consensus 84 ~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~ 163 (321)
T KOG0148|consen 84 APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPD 163 (321)
T ss_pred ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCC
Confidence 67899999999999999999999999998777777776544 46666666544433321 1111111122344677
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||||++..++|++|++.|+.||.|.+|+|..+ +||+||.|++.|+|..||..|||.+|+|..+++.|.+.
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 889999999999999999999999999999999988 57999999999999999999999999999999998764
Q ss_pred c
Q 025814 218 Q 218 (247)
Q Consensus 218 k 218 (247)
.
T Consensus 238 ~ 238 (321)
T KOG0148|consen 238 G 238 (321)
T ss_pred C
Confidence 3
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.81 E-value=2.3e-19 Score=163.99 Aligned_cols=149 Identities=23% Similarity=0.320 Sum_probs=115.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
|.+..+....+.....++|++||+|.+.++|.+||... .+.++.+.+................. .......++|||+
T Consensus 114 G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~-~~~~p~~~~l~v~ 192 (457)
T TIGR01622 114 GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQ-PGDIPNFLKLYVG 192 (457)
T ss_pred CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhccccc-CCCCCCCCEEEEc
Confidence 45555555555566778999999999999999998643 55666665544322211111000000 0012235799999
Q ss_pred CCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 145 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 145 nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
||+..+++++|+++|+.||.|..|.|+++..+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 193 nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 193 NLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.1e-19 Score=155.32 Aligned_cols=148 Identities=19% Similarity=0.309 Sum_probs=118.9
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-Ccc---c--hhhhhhcccccccccCCCCCCCCCCCCCCCCc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-SDI---E--HKAETKKKSIPRKAAGQTWEDPTLAEWPENDY 139 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-~~~---~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 139 (247)
++.|+.+-...|..+..++|||||+|..-++++++++. +++ . ...+.++.+...... ..+++
T Consensus 58 yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er------------~~~e~ 125 (510)
T KOG0144|consen 58 YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER------------IVEER 125 (510)
T ss_pred hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc------------cccch
Confidence 48899999999999999999999999988888888764 322 2 222333222111110 23456
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-eeCC--EeEEEEEcc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK-YVGN--RPIKLRKSK 216 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~-~i~g--~~l~V~~a~ 216 (247)
+||||-|+..++|.+++++|++||.|++|.|++|. .|.+|||+||.|.+.+.|..||+.|||. .+.| ..|.|++++
T Consensus 126 KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred hhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 89999999999999999999999999999999994 7999999999999999999999999998 4555 679999999
Q ss_pred ccccccHHHH
Q 025814 217 WQERTDFEAL 226 (247)
Q Consensus 217 ~k~~~~~~~~ 226 (247)
.+..++.++.
T Consensus 205 tqkdk~~~~l 214 (510)
T KOG0144|consen 205 TQKDKDGKRL 214 (510)
T ss_pred cCCCchHHHH
Confidence 8876665554
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.1e-18 Score=144.59 Aligned_cols=86 Identities=28% Similarity=0.505 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.++-+||||+.|+++++|+.|+..|+.||.|+.|.||+|+.||+++|||||+|++..++..|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
.+.+..
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 765543
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.78 E-value=3.4e-18 Score=158.27 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=106.7
Q ss_pred cCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccC-------CCCCC---------CCCCCCCCCCcEEEE
Q 025814 82 FQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAG-------QTWED---------PTLAEWPENDYRLFC 143 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~-------~~~~~---------~~~~~~~~~~~~lfV 143 (247)
..++++||+|++.+.|..||.. ..+.+..+.+.......... ..... ...........+|||
T Consensus 221 ~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 300 (509)
T TIGR01642 221 KEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYI 300 (509)
T ss_pred CCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEE
Confidence 4588999999999999999864 34556665554322111000 00000 000112344579999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++...
T Consensus 301 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 301 GNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998643
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.7e-18 Score=151.79 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=119.3
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEE
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLF 142 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lf 142 (247)
+|.+..+....+..+..++|++||.|.+.++|.+|++ +..+.++.+.+....+... ....++||
T Consensus 27 ~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~-------------~~~~~~l~ 93 (352)
T TIGR01661 27 IGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD-------------SIKGANLY 93 (352)
T ss_pred cCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-------------ccccceEE
Confidence 4778787777777778899999999999999999986 4467787777765543321 22345899
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEccccc
Q 025814 143 CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRKSKWQE 219 (247)
Q Consensus 143 V~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a~~k~ 219 (247)
|+||+.++++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|++||+.|||..+.| +.|.|.++....
T Consensus 94 v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 94 VSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred ECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999998877 678888886543
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.77 E-value=1.9e-18 Score=161.87 Aligned_cols=152 Identities=22% Similarity=0.340 Sum_probs=112.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccc----hhhhhhcccccccccCCC-----CCCCCCCCC
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIE----HKAETKKKSIPRKAAGQT-----WEDPTLAEW 134 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~----~~~~~~~~~~~r~~~~~~-----~~~~~~~~~ 134 (247)
|.+..+....+ ....+++++||.|++.+++.+|+.. ..+. ++.+.+.....+...... .........
T Consensus 203 G~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~ 281 (562)
T TIGR01628 203 GEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKM 281 (562)
T ss_pred CCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhc
Confidence 55544444333 3456789999999999999988753 3454 444444333322211000 000000011
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.....+|||+||++++++++|+++|+.||.|.+|+|+.| .+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 334568999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 361 a~~k~~ 366 (562)
T TIGR01628 361 AQRKEQ 366 (562)
T ss_pred ccCcHH
Confidence 987653
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2e-17 Score=111.89 Aligned_cols=70 Identities=39% Similarity=0.737 Sum_probs=67.6
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|+.|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999986
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=1.1e-17 Score=156.86 Aligned_cols=141 Identities=21% Similarity=0.309 Sum_probs=117.1
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEE
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLF 142 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lf 142 (247)
+|.+..+.+..+..+..++|++||+|.+.++|.+|++. ..+.++.+++........ . ......+||
T Consensus 24 ~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~---------~--~~~~~~~vf 92 (562)
T TIGR01628 24 FGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS---------L--RRSGVGNIF 92 (562)
T ss_pred cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc---------c--cccCCCceE
Confidence 37777888888888888999999999999999999864 357777777654321110 0 012234799
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 143 CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 143 V~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
|+||+.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.....+
T Consensus 93 V~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 93 VKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 99999999999999999999999999999984 7999999999999999999999999999999999999765443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1e-17 Score=147.17 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++||..|||..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8753
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=2.4e-17 Score=152.28 Aligned_cols=127 Identities=19% Similarity=0.296 Sum_probs=101.4
Q ss_pred hcCCCceeeCccCHHHHHHHHhcC-----ccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q 025814 81 LFQRDAQTITPEALESVKAALASS-----DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVL 155 (247)
Q Consensus 81 ~~~~~~~~v~~~~~~~a~~al~~~-----~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L 155 (247)
...++++||+|++.++|..|+... .+.++.+.+....+...... +......+|||+||++++++++|
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~--------~~~~~~k~LfVgNL~~~~tee~L 250 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE--------DVMAKVKILYVRNLMTTTTEEII 250 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc--------cccccccEEEEeCCCCCCCHHHH
Confidence 456899999999999999887532 34566666655443322111 11223458999999999999999
Q ss_pred HHHhccC--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccccH
Q 025814 156 SKAFSRF--PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDF 223 (247)
Q Consensus 156 ~~~F~~~--G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~~~ 223 (247)
+++|+.| |.|++|+++++ ||||+|.+.++|++|++.|||.+|+|+.|+|.+++++.+...
T Consensus 251 ~~~F~~f~~G~I~rV~~~rg--------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~ 312 (578)
T TIGR01648 251 EKSFSEFKPGKVERVKKIRD--------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSY 312 (578)
T ss_pred HHHHHhcCCCceEEEEeecC--------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccc
Confidence 9999999 99999988654 999999999999999999999999999999999988765533
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=140.45 Aligned_cols=84 Identities=23% Similarity=0.411 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 133 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
+.....++|+|+|||+.+.|-||+.+|++||.|.+|+|+.+ -..+||||||+|++.+||++|-.+|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33555679999999999999999999999999999999987 3568999999999999999999999999999999999
Q ss_pred EEcccc
Q 025814 213 RKSKWQ 218 (247)
Q Consensus 213 ~~a~~k 218 (247)
+.+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998754
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.8e-17 Score=134.08 Aligned_cols=83 Identities=27% Similarity=0.459 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+.++|-|.||+.+++|++|+++|..||.|.++.|.+|+.||.+||||||.|.+.++|.+||..|||.-+++..|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 025814 216 KWQ 218 (247)
Q Consensus 216 ~~k 218 (247)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 876
No 20
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=134.54 Aligned_cols=79 Identities=28% Similarity=0.504 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
-++||||||+|++..++|+++|++||+|++..|+.|+.||++||||||+|.+.++|.+|++. -.-.|+||+..++++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 35799999999999999999999999999999999999999999999999999999999954 45689999999988753
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=7e-17 Score=143.44 Aligned_cols=154 Identities=23% Similarity=0.277 Sum_probs=121.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCC-----------CC--CC
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTW-----------ED--PT 130 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~-----------~~--~~ 130 (247)
|++...-+.........||++||+|.-.+++.+|+.. ..++++.+++..+..|....... .. +.
T Consensus 30 GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~ 109 (678)
T KOG0127|consen 30 GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPT 109 (678)
T ss_pred cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcc
Confidence 4444444445555677899999999999999998875 46899999998887776544111 00 11
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 131 ~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
-.......-+|.|.||||.|.+.+|+.+|+.||.|..|.|.+.+. |+..|||||.|....+|..||+.|||..|+||.|
T Consensus 110 k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 110 KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCcee
Confidence 111233356899999999999999999999999999999998765 4445999999999999999999999999999999
Q ss_pred EEEEccccccc
Q 025814 211 KLRKSKWQERT 221 (247)
Q Consensus 211 ~V~~a~~k~~~ 221 (247)
-|.||..++..
T Consensus 189 AVDWAV~Kd~y 199 (678)
T KOG0127|consen 189 AVDWAVDKDTY 199 (678)
T ss_pred EEeeecccccc
Confidence 99999988754
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1.9e-17 Score=153.21 Aligned_cols=81 Identities=30% Similarity=0.592 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++||||||++++++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.70 E-value=3e-17 Score=127.39 Aligned_cols=143 Identities=26% Similarity=0.376 Sum_probs=119.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
++|..+....+.-+..++|++|+.|...++++-|+. .-.+-++.+++.++...+.. ...+.+|||
T Consensus 34 gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~n------------l~vganlfv 101 (203)
T KOG0131|consen 34 GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN------------LDVGANLFV 101 (203)
T ss_pred CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccccc------------ccccccccc
Confidence 667777777777788899999999987777776654 45778888888776521111 233468999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMA-KVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v-~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
+||.++++|..|.+.|+.||.+.+. +|+++..||.++|||||.|.+.+.+.+|+..|||..++++.|.|.++..++..
T Consensus 102 gNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 102 GNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999998764 89999999999999999999999999999999999999999999999766543
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=6.5e-16 Score=104.85 Aligned_cols=70 Identities=26% Similarity=0.611 Sum_probs=65.4
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
|||+|||+++++++|+++|+.||.|..+.+..++. |..+|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999985
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=9.5e-17 Score=131.05 Aligned_cols=139 Identities=18% Similarity=0.260 Sum_probs=118.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+.+....++..+..+-|++||.+-+.+++++|++ +..+..+.+.+..+.+.... -.+.+|||
T Consensus 66 GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~-------------Ik~aNLYv 132 (360)
T KOG0145|consen 66 GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS-------------IKDANLYV 132 (360)
T ss_pred cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh-------------hcccceEE
Confidence 777888888899999999999999998888888876 44566677777666554332 23448999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEcccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRKSKWQ 218 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a~~k 218 (247)
++||..++..||+++|++||.|...+|+.|..||.+||.|||.|+..++|+.||+.|||..--| ..|.|.++...
T Consensus 133 SGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 133 SGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999997655 67999998744
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.4e-17 Score=129.21 Aligned_cols=80 Identities=24% Similarity=0.496 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+..-|||||||++.||.+|.-+|++||.|.+|.++||+.||+++||||+.|++..+.--|+..|||..|.||.|+|..-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 44557999999999999999999999999999999999999999999999999999999999999999999999999654
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.6e-16 Score=136.90 Aligned_cols=97 Identities=21% Similarity=0.392 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~ 213 (247)
+..++.||||.||.++.|++|.-+|+..|.|-+++|++|+.+|.+||||||.|.+.++|+.||+.||+.+|. |+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 467889999999999999999999999999999999999999999999999999999999999999999885 8999999
Q ss_pred EccccccccHHHHHhhhc
Q 025814 214 KSKWQERTDFEALERSKN 231 (247)
Q Consensus 214 ~a~~k~~~~~~~~~~~~~ 231 (247)
.+..+.|--...+.+.++
T Consensus 160 ~Svan~RLFiG~IPK~k~ 177 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKK 177 (506)
T ss_pred EeeecceeEeccCCcccc
Confidence 887776644434433333
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.66 E-value=6.6e-16 Score=135.96 Aligned_cols=80 Identities=26% Similarity=0.445 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCEeEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANP--SDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~--~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
....+||||||.+.+++++|+.+|..||.|.+|.|+++ +| ||||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34458999999999999999999999999999999954 77 99999999987 78999999999999999999999
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
.|++..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998754
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.9e-16 Score=121.25 Aligned_cols=78 Identities=26% Similarity=0.562 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++||||||+..+++.||+.+|..||.|.+|+|-+++ .|||||+|++..+|+.|+..|||..|.|..|+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5689999999999999999999999999999998764 68999999999999999999999999999999999987
Q ss_pred ccc
Q 025814 218 QER 220 (247)
Q Consensus 218 k~~ 220 (247)
..+
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 655
No 30
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=6.9e-16 Score=128.18 Aligned_cols=76 Identities=9% Similarity=0.222 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+||++.+++++|+++|+.||.|.+|.|++|+. .+|||||+|.+.++++.|| .|||..|+|+.|+|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 34899999999999999999999999999999999853 5789999999999999999 5999999999999999863
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.65 E-value=1.7e-15 Score=139.36 Aligned_cols=142 Identities=16% Similarity=0.104 Sum_probs=106.2
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-----CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcE
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYR 140 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 140 (247)
+|.|..+... .+++++||+|++.++|..|++. ..+.++.+.+.....+........+ ..........+
T Consensus 26 fG~V~~v~i~------~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~-~~~~~~~~~~~ 98 (481)
T TIGR01649 26 FGPVSYVMML------PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSD-FDSAGPNKVLR 98 (481)
T ss_pred cCCeeEEEEE------CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCc-ccCCCCCceEE
Confidence 4666554332 2578999999999999999963 3578888887766543211111000 00011223347
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEcccc
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRKSKWQ 218 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a~~k 218 (247)
|||+||++++++++|+++|+.||.|.+|.|+++.. +|+|||+|.+.++|.+|++.|||..|.| +.|+|.+++..
T Consensus 99 v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 99 VIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 99999999999999999999999999999987642 4799999999999999999999999964 58999998753
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.6e-16 Score=127.17 Aligned_cols=83 Identities=40% Similarity=0.766 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
...-+||+.|..+++.++|++.|.+||+|.+++|++|..|+++||||||.|-+.++|++||..|||.-|++|.|+-.|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc
Q 025814 217 WQE 219 (247)
Q Consensus 217 ~k~ 219 (247)
.|.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 665
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=4e-16 Score=123.48 Aligned_cols=82 Identities=21% Similarity=0.452 Sum_probs=78.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
..|-|-||.+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|+..|+|..|+|+.|.|.++++-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cc
Q 025814 219 ER 220 (247)
Q Consensus 219 ~~ 220 (247)
..
T Consensus 94 r~ 95 (256)
T KOG4207|consen 94 RP 95 (256)
T ss_pred CC
Confidence 43
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=132.81 Aligned_cols=129 Identities=23% Similarity=0.287 Sum_probs=99.1
Q ss_pred hhcCCCceeeCccCHHHHHHHHhcC-----ccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHH
Q 025814 80 QLFQRDAQTITPEALESVKAALASS-----DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDV 154 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~~-----~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~ 154 (247)
...-||++||.+++-..|..+-... .+.+..+.+.=+.++...... .-..-..|||.||+.++|++.
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded--------~ms~VKvLYVRNL~~~tTeE~ 275 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED--------TMSKVKVLYVRNLMESTTEET 275 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh--------hhhheeeeeeeccchhhhHHH
Confidence 5667999999999877666654321 344444444333332221111 011223699999999999999
Q ss_pred HHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccccHH
Q 025814 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFE 224 (247)
Q Consensus 155 L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~~~~ 224 (247)
|+++|..||.|.+|+.++| ||||.|.+.++|.+|++.+||.+|+|..|.|.+|++..+...+
T Consensus 276 lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 276 LKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999988 9999999999999999999999999999999999987655433
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-16 Score=125.37 Aligned_cols=84 Identities=30% Similarity=0.509 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++||||+|..+++|..|...|-.||.|.+|.+..|-.++++||||||+|...|+|.+||..||+.++.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 216 KWQE 219 (247)
Q Consensus 216 ~~k~ 219 (247)
++..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8743
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=3.4e-15 Score=138.04 Aligned_cols=81 Identities=21% Similarity=0.424 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~ 213 (247)
...+++|||+|||++++|++|+++|++||.|.+++|++| .+|.++|||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 79999999999999999999999999999885 7888776
Q ss_pred Ecc
Q 025814 214 KSK 216 (247)
Q Consensus 214 ~a~ 216 (247)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 654
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.3e-15 Score=132.13 Aligned_cols=131 Identities=22% Similarity=0.347 Sum_probs=113.4
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC---ccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEE
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS---DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRL 141 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l 141 (247)
|.+++.++.++.+. + +-++++|.|.+.+++.+||... .+.++.+++.... .+...|
T Consensus 21 ~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~------------------rd~~~~ 79 (369)
T KOG0123|consen 21 PAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ------------------RDPSLV 79 (369)
T ss_pred ccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc------------------cCCcee
Confidence 44888899999999 6 9999999999999999998754 6778887774432 122239
Q ss_pred EEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 142 FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 142 fV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
||.||+.+++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++.++|.+|+..|||..+.|+.|.|.....+.
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 999999999999999999999999999999995 56 9999 999999999999999999999999999998876544
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=6e-16 Score=137.82 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=113.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhccccc---ccccCCCCCCCCCCCCCCCCcEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIP---RKAAGQTWEDPTLAEWPENDYRL 141 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~~~~~~l 141 (247)
+.|-.+-...+.....++|++||.|.+.+++-.++... -+-+..+.++.... +.+....+..... ...+-..|
T Consensus 204 gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~--~~~p~~rl 281 (549)
T KOG0147|consen 204 GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKG--FTGPMRRL 281 (549)
T ss_pred cCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccc--cccchhhh
Confidence 66666666777778889999999999999999988654 23333333322221 1111111111111 11222239
Q ss_pred EEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 142 FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 142 fV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
|||||.+++++++|+.+|+.||.|..|.+.+|..||.++|||||+|.+.++|.+|+..|||.+|.|+.|+|..-..
T Consensus 282 ~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 282 YVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999976543
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=7.8e-15 Score=134.99 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=100.9
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCC-------------C--------CCCCC---CCCCC
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQT-------------W--------EDPTL---AEWPE 136 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~-------------~--------~~~~~---~~~~~ 136 (247)
++++||.|++.++|..|+. +..+.++.+.+............ . ..+.. .....
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ 392 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQP 392 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCC
Confidence 7999999999999998885 55788888887654332110000 0 00000 00123
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCC--eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe-----
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPS--FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP----- 209 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~--i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~----- 209 (247)
...+|||+|||.++++++|+++|+.||. |..+++.... ++ .+|||||+|.+.++|.+||..|||..|.|+.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 4568999999999999999999999998 8888886553 33 5899999999999999999999999999985
Q ss_pred -EEEEEcccc
Q 025814 210 -IKLRKSKWQ 218 (247)
Q Consensus 210 -l~V~~a~~k 218 (247)
|+|.+++++
T Consensus 471 ~lkv~fs~~~ 480 (481)
T TIGR01649 471 HLKVSFSTSR 480 (481)
T ss_pred eEEEEeccCC
Confidence 999998754
No 40
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.9e-15 Score=111.02 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++||||||.+.++|+.|.++|+.||.|..|.+=.|+.+-..=|||||+|.+.++|+.|++.+||..++.+.|++.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 34569999999999999999999999999999988888888888899999999999999999999999999999999875
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3e-15 Score=122.38 Aligned_cols=85 Identities=29% Similarity=0.516 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.+...+|.|.=||..+|++||+.+|...|+|++|+++||+-+|.+.|||||.|.+++||++|+..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+++..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 99865
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=1.1e-15 Score=118.73 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
..+.+||||||+..++++.|.++|-+.|+|.++++.+|+.+...+|||||+|.+.++|+-|++.||...+.||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=8.6e-16 Score=130.76 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=122.4
Q ss_pred CCCCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcE
Q 025814 64 APVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYR 140 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 140 (247)
.|||++.++-..-+..++.+++++||.+|-.+.+.-+++ +.-+.++.+.+.+...-.+.....+. ..+....-++
T Consensus 135 ~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~--vqeeAk~fnR 212 (544)
T KOG0124|consen 135 DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM--VQEEAKKFNR 212 (544)
T ss_pred cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHH--HHHHHHhhhe
Confidence 678999998888888899999999999998887777765 44678888887654332222111100 0011233458
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
|||..+.++.+|+||+.+|+.||.|..|.+-+++.++.+|||||++|.+..+...||..||-+.++|..|+|..+.
T Consensus 213 iYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 213 IYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred EEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 9999999999999999999999999999999999888999999999999999999999999999999999997664
No 44
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=9.7e-15 Score=98.04 Aligned_cols=72 Identities=33% Similarity=0.737 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
+|||+|||.++++++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|++|+..++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999885 7889999999999999999999999999999999873
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=8.3e-15 Score=119.97 Aligned_cols=76 Identities=12% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.+.+|||+||++.+++++|+++|+.||.|.+|+|++| +..+|||||+|.+.++++.|+ .|||..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4569999999999999999999999999999999998 445689999999999999999 899999999999997654
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=3.4e-15 Score=133.38 Aligned_cols=83 Identities=24% Similarity=0.462 Sum_probs=79.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.||+.+|||||+|.+.+++..|++.|||.++.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred ccc
Q 025814 219 ERT 221 (247)
Q Consensus 219 ~~~ 221 (247)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 443
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.56 E-value=3.9e-15 Score=123.40 Aligned_cols=114 Identities=14% Similarity=0.287 Sum_probs=99.4
Q ss_pred CCceeeCccCHHHHHHHH---hcCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhc
Q 025814 84 RDAQTITPEALESVKAAL---ASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFS 160 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~ 160 (247)
++++||..|+...+.+++ ....+++..+.++..+.+.. ...+|+||||.+.++.+||+..|+
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk---------------~stkl~vgNis~tctn~ElRa~fe 100 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK---------------ASTKLHVGNISPTCTNQELRAKFE 100 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC---------------CccccccCCCCccccCHHHhhhhc
Confidence 888999888766655555 45689999999988776622 233799999999999999999999
Q ss_pred cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccccc
Q 025814 161 RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220 (247)
Q Consensus 161 ~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~ 220 (247)
+||.|+++.|++| |+||.|+-.++|..|++.|||.++.|++++|.++..+-+
T Consensus 101 ~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 101 KYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999999999988 999999999999999999999999999999999877654
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.56 E-value=4.7e-15 Score=127.23 Aligned_cols=147 Identities=15% Similarity=0.264 Sum_probs=129.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
+.+...-...+..+..++++.||+|++.+.+.++|.. +.++++.++.+++.+|.......... ....||||
T Consensus 31 Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~-------~tkkiFvG 103 (311)
T KOG4205|consen 31 GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHL-------RTKKIFVG 103 (311)
T ss_pred CceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccccc-------ceeEEEec
Confidence 6666666677777899999999999999999999975 58999999999999988766543222 34489999
Q ss_pred CCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 145 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 145 nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
+|+.++++++|+++|.+||.|..+.++.|..+.+.+||+||.|.+.+++.+++ ...-+.|+|+.+.|..|.+++..
T Consensus 104 G~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 104 GLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred CcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhhc
Confidence 99999999999999999999999999999999999999999999999999998 56788999999999999988754
No 49
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=2.1e-14 Score=96.03 Aligned_cols=71 Identities=38% Similarity=0.748 Sum_probs=67.4
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 143 CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 143 V~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
|+||+.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988789999999999999999999999999999999999873
No 50
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=2.1e-14 Score=131.29 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||..+++++|+++|+.||.|.+|+|+.|+.+|.++|||||+|.+.++|.+|| .|+|..+.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 344679999999999999999999999999999999999999999999999999999999999 6999999999999987
Q ss_pred ccc
Q 025814 215 SKW 217 (247)
Q Consensus 215 a~~ 217 (247)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 51
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=120.67 Aligned_cols=79 Identities=32% Similarity=0.707 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.++|||+||++.+++++|.++|..||.|..+.+..|+.+|.++|||||+|.+.+++..|+..++|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5799999999999999999999999999999999998899999999999999999999999999999999999999965
No 52
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=107.94 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
-.+..|||.++....+|++|...|..||.|+++.+..|+.||..+||++|+|++.+.|++|+..|||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 025814 216 KW 217 (247)
Q Consensus 216 ~~ 217 (247)
--
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 53
No 53
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=7e-14 Score=129.53 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=105.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCC----------CCC--
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWED----------PTL-- 131 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~----------~~~-- 131 (247)
|.+..+....+.....++|++||+|++.+.+..|+. +..+.++.+.+..+............ ...
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQ 399 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchh
Confidence 333333334444456679999999999888888875 45677777776665432211110000 000
Q ss_pred ---CCCCCCCcEEEEcCCCCC----------CcHHHHHHHhccCCCeeEEEEEecC---CCCCcceEEEEEecCHHHHHH
Q 025814 132 ---AEWPENDYRLFCGDLGNE----------VNDDVLSKAFSRFPSFNMAKVVRDK---RTGKTKGYGFISFANPSDIAA 195 (247)
Q Consensus 132 ---~~~~~~~~~lfV~nLp~~----------~~e~~L~~~F~~~G~i~~v~i~~~~---~tg~~kg~~FV~f~~~~~a~~ 195 (247)
........+|+|.||... ...++|+++|+.||.|.+|.|.++. .++...|++||+|.+.++|++
T Consensus 400 ~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~ 479 (509)
T TIGR01642 400 SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEK 479 (509)
T ss_pred hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHH
Confidence 001224567999999542 1235789999999999999998753 346678999999999999999
Q ss_pred HHHHhCCceeCCEeEEEEEcc
Q 025814 196 ALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 196 Al~~l~g~~i~g~~l~V~~a~ 216 (247)
|+..|||..|+|+.|.|.+..
T Consensus 480 A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 480 AMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHcCCCEECCeEEEEEEeC
Confidence 999999999999999999864
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.1e-13 Score=123.28 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHh-----CC-ceeCCE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM-----NG-KYVGNR 208 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l-----~g-~~i~g~ 208 (247)
...+.+|||.||++++++++|.++|++||.|..+.|+.++.||.++|.|||.|.+..++.+||... .| ..|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 344689999999999999999999999999999999999999999999999999999999999865 23 688999
Q ss_pred eEEEEEcccccc
Q 025814 209 PIKLRKSKWQER 220 (247)
Q Consensus 209 ~l~V~~a~~k~~ 220 (247)
.|+|..+..+..
T Consensus 369 ~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 369 LLKVTLAVTRKE 380 (678)
T ss_pred EEeeeeccchHH
Confidence 999999987653
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.2e-14 Score=123.76 Aligned_cols=77 Identities=31% Similarity=0.647 Sum_probs=74.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
|+||||.+.+++.|+.|+..|..||+|++|.+.+|+.|+++|||+||+|+-+|.|+-|++.|||..++||.|+|..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999754
No 56
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.1e-13 Score=91.96 Aligned_cols=74 Identities=38% Similarity=0.742 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
+|||+|||.++++++|+++|+.||.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988644 7789999999999999999999999999999999863
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=97.90 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
++-.+-|||.|||+.++.++..++|+.||.|..|+|-..+. .+|-|||.|++..+|.+|+..|+|..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 33455799999999999999999999999999999966544 489999999999999999999999999999999988
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7643
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.4e-14 Score=118.98 Aligned_cols=88 Identities=28% Similarity=0.405 Sum_probs=81.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 131 LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 131 ~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
.++..++.+.|||.-|.+-+++++|.-+|+.||.|.+|.|++|..||.+..|+||+|++.+++++|.-.|++..|+.++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34446667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025814 211 KLRKSKWQ 218 (247)
Q Consensus 211 ~V~~a~~k 218 (247)
+|.++..-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99887543
No 59
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=9.5e-14 Score=127.06 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=110.4
Q ss_pred hhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHH
Q 025814 80 QLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLS 156 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~ 156 (247)
...+.|++||.|.+.+++..|+.. ..++|..+.++....+...... .... ....+..|+|.|||+..+-.+++
T Consensus 556 k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g---K~~~-~kk~~tKIlVRNipFeAt~rEVr 631 (725)
T KOG0110|consen 556 KYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG---KKKS-KKKKGTKILVRNIPFEATKREVR 631 (725)
T ss_pred cccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---cccc-cccccceeeeeccchHHHHHHHH
Confidence 445679999999999988888764 5788888888776632222211 1111 12225689999999999999999
Q ss_pred HHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 157 KAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 157 ~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
++|..||.|.+|+|..-...+.++|||||+|-++.+|.+|+..|....+.||+|.++|+..-+
T Consensus 632 ~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 632 KLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 999999999999998875667789999999999999999999999999999999999997544
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=99.46 E-value=3.2e-13 Score=91.72 Aligned_cols=62 Identities=26% Similarity=0.507 Sum_probs=56.6
Q ss_pred HHHHHHHhc----cCCCeeEEE-EEecCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 152 DDVLSKAFS----RFPSFNMAK-VVRDKRT--GKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 152 e~~L~~~F~----~~G~i~~v~-i~~~~~t--g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
+++|+++|+ .||.|.++. |+.++.+ |.++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999995 7887767 9999999999999999999999999999999999873
No 61
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.8e-13 Score=118.90 Aligned_cols=85 Identities=29% Similarity=0.420 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
++++.+|||++||.++-+.+|..+|..||.|.+.++..|+.||.++|||||.|++..+|.+||..|||..|++++|+|..
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
.+.+.
T Consensus 501 k~~~~ 505 (510)
T KOG0144|consen 501 KRDRN 505 (510)
T ss_pred eeccC
Confidence 87654
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=105.58 Aligned_cols=81 Identities=14% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||||||.++.+.+|+.+|.+||.|..|.+-.- -...+||||+|++..+|+.||..-||..++|.+|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 345679999999999999999999999999999987433 22356999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++.-
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 8754
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.5e-12 Score=83.35 Aligned_cols=56 Identities=32% Similarity=0.669 Sum_probs=50.9
Q ss_pred HHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 155 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 155 L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
|.++|++||.|.++.+..+. +|+|||+|.+.++|..|++.|||..++|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997763 589999999999999999999999999999999985
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=8.6e-13 Score=109.58 Aligned_cols=72 Identities=22% Similarity=0.479 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...++.||+.|||..|+|..|+|+-++.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999988 99999999999999999999999999999999887763
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.36 E-value=2.1e-12 Score=102.60 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRF-PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..-+||+.++..+.+.+|..+|.+| |.|..+++.|++.||.++|||||+|++.+.|.-|-+.||+..++|+.|.+.+=-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4469999999999999999999998 677888888999999999999999999999999999999999999999998754
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 43
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.8e-12 Score=110.40 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=111.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+.+..+..+... ++++ ||.|++.+++.+++.. ..+.++.+-+.....+......... ....-.++||
T Consensus 101 g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-----~~~~~t~v~v 172 (369)
T KOG0123|consen 101 GNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-----YKKRFTNVYV 172 (369)
T ss_pred cCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-----hhhhhhhhhe
Confidence 66666666555544 8999 9999999999999863 3455555555444444333322111 1223347999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.|+..+.+++.|..+|..+|.|.++.++.+ ..|+++||+||.|.+.++|..|++.|||..+++..+.|..+..
T Consensus 173 k~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 173 KNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 999999999999999999999999999999 4788999999999999999999999999999999999988765
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.27 E-value=1.8e-11 Score=106.87 Aligned_cols=85 Identities=18% Similarity=0.367 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
...+.+||.|||+++.+.+|+++|. +.|.|..|.++.| ..|+.+||+.|+|+++|.+++|++.||.+++.||.|+|..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3455699999999999999999995 6899999999999 5899999999999999999999999999999999999977
Q ss_pred ccccccc
Q 025814 215 SKWQERT 221 (247)
Q Consensus 215 a~~k~~~ 221 (247)
....++.
T Consensus 121 d~d~q~~ 127 (608)
T KOG4212|consen 121 DHDEQRD 127 (608)
T ss_pred cCchhhh
Confidence 6554433
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.26 E-value=2.2e-11 Score=98.23 Aligned_cols=79 Identities=23% Similarity=0.432 Sum_probs=73.1
Q ss_pred EEEEcCCCCCCcHHHHHH----HhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 140 RLFCGDLGNEVNDDVLSK----AFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~----~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
||||.||+..+..++|++ +|++||.|.+|.... |.+.+|-|||.|.+.+.|-.|++.|+|..+.|+.++|.+|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 999999999999999988 999999999987764 6889999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 216 KWQERT 221 (247)
Q Consensus 216 ~~k~~~ 221 (247)
+.+..+
T Consensus 88 ~s~sdi 93 (221)
T KOG4206|consen 88 KSDSDI 93 (221)
T ss_pred cCccch
Confidence 876543
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.8e-11 Score=100.78 Aligned_cols=84 Identities=21% Similarity=0.459 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-C--CEeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV-G--NRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i-~--g~~l~ 211 (247)
+.++++||||-|...-.|||++++|..||.|.+|.+.+.. .|.+|||+||.|.+..+|+.||..|+|... - ...|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 4467799999999999999999999999999999999985 699999999999999999999999999843 3 37799
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|++++..+
T Consensus 95 VK~ADTdk 102 (371)
T KOG0146|consen 95 VKFADTDK 102 (371)
T ss_pred EEeccchH
Confidence 99998644
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.22 E-value=9.7e-12 Score=106.93 Aligned_cols=84 Identities=29% Similarity=0.563 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
+.++||||+|.|+++++.|+..|.+||.|.++.+++|+.+++++||+||+|++.+...++| ...-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5668999999999999999999999999999999999999999999999999999998888 445668999999999988
Q ss_pred ccccc
Q 025814 217 WQERT 221 (247)
Q Consensus 217 ~k~~~ 221 (247)
++...
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 77643
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.19 E-value=1.1e-10 Score=99.35 Aligned_cols=84 Identities=17% Similarity=0.357 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP 209 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~ 209 (247)
...|||.|||.++|.+++.++|++||.|. .|+|.++. .|..+|=|.|.|...++++-|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 44699999999999999999999999884 48899995 5999999999999999999999999999999999
Q ss_pred EEEEEcccccccc
Q 025814 210 IKLRKSKWQERTD 222 (247)
Q Consensus 210 l~V~~a~~k~~~~ 222 (247)
|+|+.|+...+..
T Consensus 213 ~rVerAkfq~Kge 225 (382)
T KOG1548|consen 213 LRVERAKFQMKGE 225 (382)
T ss_pred EEEehhhhhhccC
Confidence 9999997655443
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.18 E-value=4.8e-11 Score=107.19 Aligned_cols=81 Identities=21% Similarity=0.385 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
..+++|||.+|...+...+|+.+|++||.|+-.+|+.+-.+--.+|||||++.+.++|.+||..|+..+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999998878888999999999999999999999999999999999887
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 73
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.2e-10 Score=96.48 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH-HhCCceeCCEeEEEEEc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK-EMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~-~l~g~~i~g~~l~V~~a 215 (247)
...+|||+||...++|.+|+++|.+||.|.++.++.. +|+|||+|.+.++|+.|.. .+|...|+|++|+|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3468999999999999999999999999999999776 3599999999999998876 55666899999999999
Q ss_pred cc
Q 025814 216 KW 217 (247)
Q Consensus 216 ~~ 217 (247)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=2.9e-10 Score=105.36 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.+|||||+|+..+++.||..+|+.||.|.+|.++.. +|||||...+..+|.+|+..|+...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 468999999999999999999999999999988765 67999999999999999999999999999999999987
Q ss_pred ccc
Q 025814 218 QER 220 (247)
Q Consensus 218 k~~ 220 (247)
+.-
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 653
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.4e-10 Score=103.39 Aligned_cols=78 Identities=26% Similarity=0.453 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT---GKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
++|||.||+++.+.++|..+|...|.|.++.|...+.. -.+.|||||+|.+.++|++|++.|+|..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988765421 235699999999999999999999999999999999999
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.9e-10 Score=94.41 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
+...+||+|+.+.++.+++..+|+.||.|..+.+..|+.+|.++||+||+|.+.+.++.+|. |||..|.|+.|+|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34479999999999999999999999999999999999999999999999999999999996 99999999999998876
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
.+
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 54
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=5.1e-10 Score=97.84 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....|+|||.|||+++|+..|++-|..||.|..+.|+ ..|+++| .|.|.++++|++|+..|||..++||.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3556789999999999999999999999999999884 3588887 8999999999999999999999999999987
Q ss_pred c
Q 025814 215 S 215 (247)
Q Consensus 215 a 215 (247)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.97 E-value=2.4e-09 Score=88.87 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
..+|+|.||++.+.+++|+++|..||.++.+.|..|+ .|.+.|.|-|.|...++|.+|++.+||..++|+.|++.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3589999999999999999999999999999999995 799999999999999999999999999999999999987654
Q ss_pred cc
Q 025814 218 QE 219 (247)
Q Consensus 218 k~ 219 (247)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.95 E-value=1.9e-09 Score=99.12 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCE
Q 025814 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKR---TGKTKGYGFISFANPSDIAAALKEMNGKYVGNR 208 (247)
Q Consensus 132 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~---tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~ 208 (247)
.+..+..++|||+||++.++++.|...|+.||+|.+|+|++.+. ....+-||||.|.+..++++|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 33456678999999999999999999999999999999998652 234456999999999999999999999999999
Q ss_pred eEEEEEccc
Q 025814 209 PIKLRKSKW 217 (247)
Q Consensus 209 ~l~V~~a~~ 217 (247)
.+++-|++.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999854
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-09 Score=95.20 Aligned_cols=83 Identities=18% Similarity=0.368 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
..+|||.|||.+++.++|+++|..||.|+...|..-.-.++..|||||+|.+.++++.||++ +-..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999988765432355559999999999999999965 57789999999998876
Q ss_pred cccc
Q 025814 218 QERT 221 (247)
Q Consensus 218 k~~~ 221 (247)
..+.
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5543
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=2.2e-09 Score=96.48 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
..++|+|-|||..+++++|+++|+.||+|..|+. |-..+|.+||+|.|..+|++|+++||+.+|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3458999999999999999999999999998654 444578999999999999999999999999999988
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=1.9e-08 Score=81.09 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEe-cCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CEeE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR-DKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG---NRPI 210 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~-~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~---g~~l 210 (247)
.+.-+||||.+||.++.-.+|..+|..|-..+.+.+-. ++.....+-+|||+|.+..+|.+|++.|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34467999999999999999999999998777665543 2222234579999999999999999999999886 7899
Q ss_pred EEEEcccccc
Q 025814 211 KLRKSKWQER 220 (247)
Q Consensus 211 ~V~~a~~k~~ 220 (247)
++++++...+
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999876543
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.83 E-value=2.1e-08 Score=89.15 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=99.7
Q ss_pred hcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcccccccccCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHH
Q 025814 81 LFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPRKAAGQTWEDPTLA-EWPENDYRLFCGDLGNEVNDDVLSK 157 (247)
Q Consensus 81 ~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~lfV~nLp~~~~e~~L~~ 157 (247)
....+-++|.++..+++..||... .+..+-+++-........ |...... .....+..|-+.+||+.|+++||.+
T Consensus 46 Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d---~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~ 122 (510)
T KOG4211|consen 46 GRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD---WVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVE 122 (510)
T ss_pred CCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc---ccccCCCCCCCCCCceEEecCCCccCcHHHHHH
Confidence 556889999999999999999864 667777777665444332 1111111 1124556899999999999999999
Q ss_pred HhccCCCeeE-EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 158 AFSRFPSFNM-AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 158 ~F~~~G~i~~-v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
||+..-.|.. +.++.+. .++..|-|||.|++.+.|+.||. -|...|+.|-|.|..+.-
T Consensus 123 FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 123 FFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSR 181 (510)
T ss_pred HhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHH
Confidence 9998765555 5566664 67888999999999999999995 477788999999977653
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=6.3e-09 Score=84.69 Aligned_cols=71 Identities=20% Similarity=0.486 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
.||||+|++.+.+.+|+.+|..||.|.++.+.. ||+||+|.+.-+|..|+..+||.+|.|.++.|++++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 699999999999999999999999999887753 49999999999999999999999999999999999854
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.1e-08 Score=92.69 Aligned_cols=138 Identities=18% Similarity=0.360 Sum_probs=108.2
Q ss_pred hhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcccccccc----------cCCCCCCCCCCCCCCCCcEEEEcCCC
Q 025814 80 QLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPRKA----------AGQTWEDPTLAEWPENDYRLFCGDLG 147 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r~~----------~~~~~~~~~~~~~~~~~~~lfV~nLp 147 (247)
-...+.+.++.+...+.+..++... ..++............. .+..........+....+.+||++|+
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp 298 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLP 298 (500)
T ss_pred ecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCc
Confidence 3455889999999999988888654 33444444333221111 11122233344456667789999999
Q ss_pred CCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 148 NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 148 ~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
..++++.+.++...||.+....++.|..+|.++||+|.+|-+......|+..|||..++++.|.|..+-.
T Consensus 299 ~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 299 LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988754
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=2.8e-09 Score=85.58 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.+.+++|||+||...++|+-|.++|-+-|+|..|.|..++ .++.+ |+||.|.++.+..-|++.|||..+.++.|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4567799999999999999999999999999999998885 56777 999999999999999999999999999999877
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
-.+.
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6544
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=1.7e-07 Score=67.17 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcc--CCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CEeEEE
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSR--FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG----NRPIKL 212 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~----g~~l~V 212 (247)
+||.|.|||...+.++|.+++.. .|....+.+..|-.++-+.|||||.|.+.+.+.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999988854 467788899999889999999999999999999999999999775 466788
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
.+|+-..
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8876543
No 88
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.67 E-value=4.5e-08 Score=83.91 Aligned_cols=143 Identities=17% Similarity=0.285 Sum_probs=105.7
Q ss_pred ccchhhhcCCCceeeCccCHHHHHHHHhcCc---cchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEE-EcCCCCCC
Q 025814 75 YHQAQQLFQRDAQTITPEALESVKAALASSD---IEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLF-CGDLGNEV 150 (247)
Q Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~a~~al~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lf-V~nLp~~~ 150 (247)
.........++...+.|+..+....+|.... +....+.......+.. ........-......++| |+||++.+
T Consensus 121 S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~---~~~n~~~~~~~~~s~~~~~~~~~~f~~ 197 (285)
T KOG4210|consen 121 SSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGL---RPKNKLSRLSSGPSDTIFFVGELDFSL 197 (285)
T ss_pred hhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccc---cccchhcccccCccccceeeccccccc
Confidence 3334566679999999999999999987653 2333333333332221 111111111122333555 99999999
Q ss_pred cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 151 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 151 ~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
++++|..+|..+|.|..+++..+..+|..+||+||.|.+......++.. +...+.++.+.+.+...+...
T Consensus 198 ~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 198 TRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred chHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 9999999999999999999999999999999999999999999999866 788999999999988776443
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.61 E-value=1.7e-07 Score=83.52 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.....-|-+.+|||++|++||.++|+.|+ |.++.+.+. +|+..|-|||+|.+.+++++|+ +.|...++.|-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 44455788899999999999999999996 666666554 8999999999999999999999 5688889999999988
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+...+
T Consensus 83 ~~~~e 87 (510)
T KOG4211|consen 83 AGGAE 87 (510)
T ss_pred cCCcc
Confidence 75544
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=6.1e-08 Score=78.96 Aligned_cols=125 Identities=15% Similarity=0.258 Sum_probs=86.8
Q ss_pred CCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccc-cccCCCC-----C-CCCCCCCCCCCcEEEEcCCCCCCcH
Q 025814 83 QRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPR-KAAGQTW-----E-DPTLAEWPENDYRLFCGDLGNEVND 152 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r-~~~~~~~-----~-~~~~~~~~~~~~~lfV~nLp~~~~e 152 (247)
..+++||.|++..++.+++.. ..+.+..+.+..+... ...+... . ...........+.|+|.|+..++.+
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~ 113 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSW 113 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhH
Confidence 367779999998888888753 3444433222222211 1111100 0 1111112345678999999999999
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 153 ~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+|.++|+.+|.+....+ ..+++||+|...+++.+||..|+|..+.|+.|.+...
T Consensus 114 qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 114 QDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 999999999999844433 2459999999999999999999999999999999443
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.54 E-value=1.1e-07 Score=81.20 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
.....+|||||-|++|++||.+.+...| .+.++++..++.+|.+|||++|...+..+.++.++.|--.+|+|..-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3445799999999999999999988776 56778889999999999999999999999999999999999999877765
Q ss_pred EccccccccHHHHHhhhc
Q 025814 214 KSKWQERTDFEALERSKN 231 (247)
Q Consensus 214 ~a~~k~~~~~~~~~~~~~ 231 (247)
--...+....+..+++..
T Consensus 158 ~~NK~~~ak~E~~~~K~~ 175 (498)
T KOG4849|consen 158 SYNKTNQAKLEDAQAKNQ 175 (498)
T ss_pred ccchhhHHHHHHHHhhhc
Confidence 555455555555444443
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=1.3e-06 Score=70.83 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=95.6
Q ss_pred hhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCC-------------------------------
Q 025814 80 QLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQT------------------------------- 125 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~------------------------------- 125 (247)
+.-.||-++|.|.+.+.+-.|+. +--.-++.+++.++.........
T Consensus 48 t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~ 127 (221)
T KOG4206|consen 48 TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFY 127 (221)
T ss_pred CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCccccccccc
Confidence 44569999999998777777664 44455666555554432211110
Q ss_pred -----CCCCCC-CCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHH
Q 025814 126 -----WEDPTL-AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKE 199 (247)
Q Consensus 126 -----~~~~~~-~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~ 199 (247)
...+.. .........||+.|||.+++.+.|..+|.+|...+.|+++..+ +|.+||+|.+...+..|...
T Consensus 128 ~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 128 NMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred ccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 000000 1224556789999999999999999999999999999998764 46999999999999999999
Q ss_pred hCCceeC-CEeEEEEEcc
Q 025814 200 MNGKYVG-NRPIKLRKSK 216 (247)
Q Consensus 200 l~g~~i~-g~~l~V~~a~ 216 (247)
+.|..|- ...+.|.+++
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9999876 7788887764
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.37 E-value=2.9e-07 Score=79.20 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNR 208 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~ 208 (247)
...+|||-+|+..+++++|..+|.+||.|. .|+|.+|+.|+..||-|.|.|++...|+.|+..+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 344899999999999999999999999884 467889999999999999999999999999999999999999
Q ss_pred eEEEEEcccccc
Q 025814 209 PIKLRKSKWQER 220 (247)
Q Consensus 209 ~l~V~~a~~k~~ 220 (247)
.|+|..+..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999988876554
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.32 E-value=2.1e-07 Score=83.90 Aligned_cols=80 Identities=18% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+.+++|+.-|....+..+|.++|+.+|.|.+|.++.|+.++.++|.|||+|.+.+++..|| .|.|..+.|..|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 44678999999999999999999999999999999999999999999999999999999999 89999999999999765
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 256 E 256 (549)
T KOG0147|consen 256 E 256 (549)
T ss_pred H
Confidence 3
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.32 E-value=1.1e-06 Score=75.03 Aligned_cols=85 Identities=15% Similarity=0.285 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCcHHHH------HHHhccCCCeeEEEEEecCCC-CCcce-E-EEEEecCHHHHHHHHHHhCCceeCCEe
Q 025814 139 YRLFCGDLGNEVNDDVL------SKAFSRFPSFNMAKVVRDKRT-GKTKG-Y-GFISFANPSDIAAALKEMNGKYVGNRP 209 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L------~~~F~~~G~i~~v~i~~~~~t-g~~kg-~-~FV~f~~~~~a~~Al~~l~g~~i~g~~ 209 (247)
.-+||-+|++.+.+++. .++|++||.|+.|.|-+.... ....+ + .||+|.+.++|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 35999999999877762 589999999998866543211 11122 2 399999999999999999999999999
Q ss_pred EEEEEccccccccH
Q 025814 210 IKLRKSKWQERTDF 223 (247)
Q Consensus 210 l~V~~a~~k~~~~~ 223 (247)
|+..+...|-...+
T Consensus 195 lkatYGTTKYCtsY 208 (480)
T COG5175 195 LKATYGTTKYCTSY 208 (480)
T ss_pred EeeecCchHHHHHH
Confidence 99988776654433
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.31 E-value=2.7e-06 Score=74.30 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 138 DYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 138 ~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
...|-|.||... +|.+.|..+|+-||.|.+|+|+.++. --|.|.|.+...|+-|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467888888665 89999999999999999999998863 379999999999999999999999999999999987
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 97
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=4.2e-06 Score=65.91 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=88.8
Q ss_pred CCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCC---------C----CCCCCCCCCCCcEEEEcCCC
Q 025814 84 RDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTW---------E----DPTLAEWPENDYRLFCGDLG 147 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~---------~----~~~~~~~~~~~~~lfV~nLp 147 (247)
-.++||.||++.+|++|+.+ .+.++-.+++....--....... . .......-....+|.|.+||
T Consensus 45 ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp 124 (241)
T KOG0105|consen 45 PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLP 124 (241)
T ss_pred CCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCC
Confidence 56899999999999999864 46666666665543221111000 0 00001112345689999999
Q ss_pred CCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCEeEEEE
Q 025814 148 NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV--GNRPIKLR 213 (247)
Q Consensus 148 ~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i--~g~~l~V~ 213 (247)
.+.++.+|+.+...-|.|....+.+| |+|.|+|...++++.|++.|+...+ .|....++
T Consensus 125 ~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 125 PSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred CCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 99999999999999999999999888 4899999999999999999998754 35444443
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.29 E-value=7.7e-06 Score=70.15 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=93.3
Q ss_pred CCceeeCccCHHHHHHHHhcCccchhhhhhcccccccccC------------------------CCCCCCC-CCCCCCCC
Q 025814 84 RDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAG------------------------QTWEDPT-LAEWPEND 138 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~~~~~~~~~~~~~~~~~r~~~~------------------------~~~~~~~-~~~~~~~~ 138 (247)
.-|+|+.-++.+-|...|++..+++..+++.++.-..... -.|.... ........
T Consensus 186 aLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~ 265 (382)
T KOG1548|consen 186 ALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARAD 265 (382)
T ss_pred eEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCC
Confidence 3355666777888888888888888877776654321111 1111111 12234556
Q ss_pred cEEEEcCCCC----CCc-------HHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 139 YRLFCGDLGN----EVN-------DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 139 ~~lfV~nLp~----~~~-------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
++|.|.||=. ..+ .++|.+-..+||.|.+|.|.- ..+.|.+-|.|.+.++|..||+.|+|..++|
T Consensus 266 ~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 266 RTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred cEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 7899998721 222 245666778999999997753 2346899999999999999999999999999
Q ss_pred EeEEEEEccccccc
Q 025814 208 RPIKLRKSKWQERT 221 (247)
Q Consensus 208 ~~l~V~~a~~k~~~ 221 (247)
|.|......++.+-
T Consensus 342 Rql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 342 RQLTASIWDGKTKF 355 (382)
T ss_pred eEEEEEEeCCccee
Confidence 99999988776543
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.27 E-value=8e-07 Score=71.88 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
-+.+|||.||..+|+|++|+++|+.|-....++|... .| .+.+|++|++.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 3568999999999999999999999987766666322 22 35899999999999999999999866
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=5.2e-06 Score=57.17 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCcHHH----HHHHhccCCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 140 RLFCGDLGNEVNDDV----LSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~----L~~~F~~~G~-i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.|||.|||.+.+-.. |++++..||. |.+| . .|-|+|.|.+.+.|.+|.+.|+|..+.|++|.|++
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 699999999988754 5677778874 4433 1 25799999999999999999999999999999998
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 74
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=4.2e-06 Score=61.15 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC-----ceeCCEeEEEE
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG-----KYVGNRPIKLR 213 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g-----~~i~g~~l~V~ 213 (247)
+.|+|.++...++-++|+.+|+.||.|..|.+.+.-. .|||.|.+.+.|+.|+..+.. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999999988876522 799999999999999885543 36778777777
Q ss_pred Ecccccc
Q 025814 214 KSKWQER 220 (247)
Q Consensus 214 ~a~~k~~ 220 (247)
.=...+.
T Consensus 76 vLeGeeE 82 (105)
T PF08777_consen 76 VLEGEEE 82 (105)
T ss_dssp ---HHHH
T ss_pred ECCCHHH
Confidence 6554443
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.00 E-value=4.4e-05 Score=66.22 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=84.3
Q ss_pred CCCceeeCccCHHHHHHHHhcCc-----cchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEE--EcCCCCCCcHHHH
Q 025814 83 QRDAQTITPEALESVKAALASSD-----IEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLF--CGDLGNEVNDDVL 155 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~~~-----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lf--V~nLp~~~~e~~L 155 (247)
++.-+.|.||+++.++.+.+-.. +.+...-..+...+.-. .+.. +.......|. |-|--+-+|-+.|
T Consensus 66 ~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~-----R~g~-es~~pN~VLl~TIlNp~YpItvDVl 139 (494)
T KOG1456|consen 66 HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE-----RPGD-ESATPNKVLLFTILNPQYPITVDVL 139 (494)
T ss_pred ccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc-----cCCC-CCCCCCeEEEEEeecCccccchhhh
Confidence 35567789999999999876432 22222222221111100 0000 0011222333 3455667999999
Q ss_pred HHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CEeEEEEEccccc
Q 025814 156 SKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG--NRPIKLRKSKWQE 219 (247)
Q Consensus 156 ~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~--g~~l~V~~a~~k~ 219 (247)
..+...+|.|.+|-|++. +|. -|.|+|++.+.|++|...|||..|. =..|+|+++++..
T Consensus 140 y~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 140 YTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 999999999999988775 444 5899999999999999999999775 3789999998754
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.97 E-value=3.9e-06 Score=69.17 Aligned_cols=71 Identities=10% Similarity=0.189 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCceeC
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT--------GKTKG----YGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~t--------g~~kg----~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
..||++|||+.++-.-|+++|+.||.|-+|.+-....+ |.+++ -|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999988765444 33332 2789999999999999999999999
Q ss_pred CEe
Q 025814 207 NRP 209 (247)
Q Consensus 207 g~~ 209 (247)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 876
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=2.9e-05 Score=70.73 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=87.8
Q ss_pred cccchhhhcCCCceeeCccC---HHHHHHHHhcCccchhhhhhcccccccccCCCCCC--C-C------C--CCCCCCCc
Q 025814 74 QYHQAQQLFQRDAQTITPEA---LESVKAALASSDIEHKAETKKKSIPRKAAGQTWED--P-T------L--AEWPENDY 139 (247)
Q Consensus 74 ~~~~~~~~~~~~~~~v~~~~---~~~a~~al~~~~~~~~~~~~~~~~~r~~~~~~~~~--~-~------~--~~~~~~~~ 139 (247)
...+....++++++|-.+-+ .+.+++.|+++.+.++.+.+..+.........+.. . . . ........
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcch
Confidence 33344456778888766654 55666777777777777766665544433333222 0 0 0 00111122
Q ss_pred EEEEcCC--CCC-CcH-------HHHHHHhccCCCeeEEEEEecCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 140 RLFCGDL--GNE-VND-------DVLSKAFSRFPSFNMAKVVRDKRT---GKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 140 ~lfV~nL--p~~-~~e-------~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
.|-+.|+ +.+ .++ ++++.-++.||.|.+|.|.++-.. .-.-|--||+|.+.+++++|..+|+|..+.
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 2333332 111 122 233455679999999999887222 233466799999999999999999999999
Q ss_pred CEeEEEEEc
Q 025814 207 NRPIKLRKS 215 (247)
Q Consensus 207 g~~l~V~~a 215 (247)
||.|...|-
T Consensus 481 nRtVvtsYy 489 (500)
T KOG0120|consen 481 NRTVVASYY 489 (500)
T ss_pred CcEEEEEec
Confidence 999998874
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00016 Score=65.24 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=83.6
Q ss_pred hcCCC---ceeeCccCHHHHHHHHhcCccchhhhhhcccccccc----cCCCCC--CCC----CCCCCCCCcEEEEcCCC
Q 025814 81 LFQRD---AQTITPEALESVKAALASSDIEHKAETKKKSIPRKA----AGQTWE--DPT----LAEWPENDYRLFCGDLG 147 (247)
Q Consensus 81 ~~~~~---~~~v~~~~~~~a~~al~~~~~~~~~~~~~~~~~r~~----~~~~~~--~~~----~~~~~~~~~~lfV~nLp 147 (247)
...+| +.|+-|++..++.+.+..-..+....-.+...++.. .-..|. +.. .....+..+|||||+||
T Consensus 300 ~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvp 379 (520)
T KOG0129|consen 300 APPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLP 379 (520)
T ss_pred CCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCC
Confidence 34466 999999999999999875432222111111111100 000110 000 11224567799999999
Q ss_pred CCCcHHHHHHHhc-cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 025814 148 NEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198 (247)
Q Consensus 148 ~~~~e~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~ 198 (247)
.-++.++|..+|. -||.|.-+.|-.|++-+..+|-|-|.|.+..+-.+||.
T Consensus 380 rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 380 RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 9999999999998 79999999999998889999999999999999999995
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.81 E-value=0.00011 Score=63.92 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.+++.+.|.+|... ++-+.|-.+|..||.|.+|++++.+ .|-|.|+..+..+.++|+..||+..+.|.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 45678999999876 7778999999999999999999875 36899999999999999999999999999999988
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++..
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 7643
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=1.2e-05 Score=76.05 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=88.1
Q ss_pred hhcCCCceeeCccCHHHHHHHHhcCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHh
Q 025814 80 QLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAF 159 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F 159 (247)
...-||.+++.|...+.+.+++......-.. ...|||.|+|+..|.++|+.++
T Consensus 705 ~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------------------------K~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 705 EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------------------------KISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred ccccccceeeEeecCCchhhhhhhhhhhhhh---------------------------hhhhheeCCCCCCchHHHHhhc
Confidence 3344777788777777777766543221110 1269999999999999999999
Q ss_pred ccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 160 SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 160 ~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
..+|.+.+++++..+ .|+.+|.+||.|.+..++.+++..+++..+.-+.+.|..+.+
T Consensus 758 ~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 758 SKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999988885 699999999999999999999988888888878888877655
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.79 E-value=5.8e-05 Score=65.71 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=96.4
Q ss_pred cCCCceeeCccCHHHHHHHHhcC--ccchhhhhhccccc--------ccccCCCCC---CCC-------CCCCCCCCcEE
Q 025814 82 FQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIP--------RKAAGQTWE---DPT-------LAEWPENDYRL 141 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~--------r~~~~~~~~---~~~-------~~~~~~~~~~l 141 (247)
.--|-+|+-|+..+.+..+|..+ .+..+.++..+... |........ .+. ..........|
T Consensus 204 rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcv 283 (508)
T KOG1365|consen 204 RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCV 283 (508)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCee
Confidence 44678899999999999999765 45555555544332 222111111 110 11112224579
Q ss_pred EEcCCCCCCcHHHHHHHhccCCC-eeE--EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 142 FCGDLGNEVNDDVLSKAFSRFPS-FNM--AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 142 fV~nLp~~~~e~~L~~~F~~~G~-i~~--v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
-+++||++.+.++|..+|..|.. |.. |.++.+ ..|+..|-|||+|.+.++|..|....+.....+|.|.|--+..
T Consensus 284 RLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 284 RLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 99999999999999999998864 333 677777 4799999999999999999999998888888899999977654
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.75 E-value=0.0002 Score=54.85 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=54.0
Q ss_pred CCCCcEEEEcCCC------CCCcH---HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 135 PENDYRLFCGDLG------NEVND---DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 135 ~~~~~~lfV~nLp------~~~~e---~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
++.+.||.|.=+. ..+.+ .+|.+.|..||.+.=++++.+ .-+|+|.+-++|.+|+ .|+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE
Confidence 5666688887555 12333 266788899999988888766 4689999999999999 8999999
Q ss_pred CCEeEEEEEccc
Q 025814 206 GNRPIKLRKSKW 217 (247)
Q Consensus 206 ~g~~l~V~~a~~ 217 (247)
+|+.|+|+...+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999988654
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.71 E-value=0.00012 Score=68.11 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCee-EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFN-MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.|-+.|+|++++-+||.++|.-|-.+- +|.+.++ +.|...|-|.|.|++.++|.+|...|++..|.+|+|+|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688899999999999999999997764 4444444 6799999999999999999999999999999999999864
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00011 Score=66.80 Aligned_cols=77 Identities=29% Similarity=0.331 Sum_probs=62.7
Q ss_pred CcEEEEcCCCCCCc------HHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeE
Q 025814 138 DYRLFCGDLGNEVN------DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPI 210 (247)
Q Consensus 138 ~~~lfV~nLp~~~~------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l 210 (247)
+..|+|.|+|---. ...|..+|+++|.|....+..+.. |..+||.|++|.+..+|+.|++.|||..|+ ++++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34789999876322 234568899999999999988865 449999999999999999999999999876 6788
Q ss_pred EEEEc
Q 025814 211 KLRKS 215 (247)
Q Consensus 211 ~V~~a 215 (247)
.|+.-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 87654
No 112
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=7.6e-05 Score=61.73 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhcCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEE
Q 025814 92 EALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 171 (247)
Q Consensus 92 ~~~~~a~~al~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~ 171 (247)
.-++.++..|+..-..++.+++..+.. ..|||.||...+..+.|.+.|+.||.|....++
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH--------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc--------------------ceEEEEecchhhhhHHHHHhhhhcCccchheee
Confidence 446778888888888888887766543 379999999999999999999999999987777
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHHhC--Cc--eeCCEeEEEE
Q 025814 172 RDKRTGKTKGYGFISFANPSDIAAALKEMN--GK--YVGNRPIKLR 213 (247)
Q Consensus 172 ~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~--g~--~i~g~~l~V~ 213 (247)
.| ..++..|-++|.|.+.-.+.+|+..++ |. .+.++..-|.
T Consensus 65 vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 65 VD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 77 468888899999999999999988773 22 3445555553
No 113
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.57 E-value=9.2e-05 Score=68.56 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=59.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
++||+|+...+.++.+..+...||.|.++..+. |||+.|.......+|+..++-..++|..+.+..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 899999999999999999999999998876543 999999999999999999999999998887755
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.55 E-value=0.00054 Score=60.30 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=89.8
Q ss_pred CCceeeCccCHHHH---HHHHhcCccchhhhhhcccccccccCCCCCCCC-------------------C---CCCCCCC
Q 025814 84 RDAQTITPEALESV---KAALASSDIEHKAETKKKSIPRKAAGQTWEDPT-------------------L---AEWPEND 138 (247)
Q Consensus 84 ~~~~~v~~~~~~~a---~~al~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------------------~---~~~~~~~ 138 (247)
++-+.|.+.+...+ ...|+++.+-++.+++...+...-......++. . ....++.
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Pps 414 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPS 414 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCch
Confidence 56677777765554 455667888888888766554322111111110 0 0123556
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-EeEEEEEccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN-RPIKLRKSKW 217 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g-~~l~V~~a~~ 217 (247)
.+|.+.|+|.+++|++|+.+|..-|......... ++.+-++++.+.+.|.|-.|+..++...+++ ..|+|++++.
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 6899999999999999999999888765543322 2233499999999999999999999998875 4899998763
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.46 E-value=0.00079 Score=48.59 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=50.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEE-EEecCC------CCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-e
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK-VVRDKR------TGKTKGYGFISFANPSDIAAALKEMNGKYVGNR-P 209 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~-i~~~~~------tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~-~ 209 (247)
.+.|.|-+.|.. ....+.+.|++||.|.+.. +.++.. .......-.|.|+++.+|.+|| ..||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 346888899998 5566888999999997664 111100 0112237789999999999999 6699999874 5
Q ss_pred EEEEEccc
Q 025814 210 IKLRKSKW 217 (247)
Q Consensus 210 l~V~~a~~ 217 (247)
+-|.+.+.
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66777643
No 116
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00036 Score=44.34 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=40.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al 197 (247)
.|-|.+.+.+..+. +..+|..||.|.++.+-.. .-+.||.|.+..+|++||
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 67888998887755 4558889999999887522 238999999999999985
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00024 Score=62.81 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEec---CCC--CCc--------ceEEEEEecCHHHHHHHHHHhCCc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD---KRT--GKT--------KGYGFISFANPSDIAAALKEMNGK 203 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~---~~t--g~~--------kg~~FV~f~~~~~a~~Al~~l~g~ 203 (247)
..++|.+.|||.+-.-+.|.++|+.||.|+.|+|... ... |.. +-+|||+|+..+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5679999999999888999999999999999999765 222 222 456899999999999999887665
Q ss_pred eeC
Q 025814 204 YVG 206 (247)
Q Consensus 204 ~i~ 206 (247)
..+
T Consensus 310 ~~w 312 (484)
T KOG1855|consen 310 QNW 312 (484)
T ss_pred hhh
Confidence 433
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00099 Score=60.27 Aligned_cols=62 Identities=21% Similarity=0.454 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEe-cCCCC--Ccce---EEEEEecCHHHHHHHHHHh
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR-DKRTG--KTKG---YGFISFANPSDIAAALKEM 200 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~-~~~tg--~~kg---~~FV~f~~~~~a~~Al~~l 200 (247)
.+.||||+||++++|+.|...|..||.+. |.+.. ....+ ..+| |.|+.|+++.++..-|.++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 46799999999999999999999999874 33331 11111 2456 9999999988877665543
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.18 E-value=0.00082 Score=58.72 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=87.2
Q ss_pred hhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhccccccc----ccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHH
Q 025814 80 QLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPRK----AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDD 153 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r~----~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~ 153 (247)
+..-.+++.|.|-+.+.-+-++..+ .+..+.+++-++.... +.+...+..... ..++.-.|-+++||+++++.
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~fl-sk~~qvivRmRGLPfdat~~ 176 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFL-SKENQVIVRMRGLPFDATAL 176 (508)
T ss_pred hhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCC-CcccceEEEecCCCCCcchH
Confidence 3444677888888888888887654 5666666665544322 122221111111 01223346677999999999
Q ss_pred HHHHHhccC----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 154 VLSKAFSRF----PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 154 ~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
++.++|..- |..+.|.++... .|+..|-|||.|..+++|+.||.. |...|+-|.|.+-.+.
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 999999632 344566555543 689999999999999999999964 5555666666664443
No 120
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.13 E-value=0.0037 Score=43.15 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG 202 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g 202 (247)
.+...||+ +|..+...||.++|+.||.|. |.++.|. -|||...+.+.+..++..++-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34456666 999999999999999999974 6666663 799999999999999988763
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.10 E-value=0.00054 Score=60.53 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-eeCCEeEEEEEcccc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK-YVGNRPIKLRKSKWQ 218 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~-~i~g~~l~V~~a~~k 218 (247)
.||||||.+.++.++|+.+|...---.+-.++. ..||+||.+.+...+.+|++.++|. ++.|+++.|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 699999999999999999997541111111111 2479999999999999999999998 789999999998776
Q ss_pred cc
Q 025814 219 ER 220 (247)
Q Consensus 219 ~~ 220 (247)
..
T Consensus 77 kq 78 (584)
T KOG2193|consen 77 KQ 78 (584)
T ss_pred HH
Confidence 53
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=5.3e-05 Score=71.85 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=63.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
+-+++||+||+..+.+.+|...|..+|.+..+.+.....+++.+|+||++|.+.+++.+|+...++..++...+-|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 34579999999999999999999999999988887666789999999999999999999996555555443334443
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.003 Score=53.47 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCcce-EEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKG-YGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 153 ~~L~~~F~~~G~i~~v~i~~~~~tg~~kg-~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+++.+..++||.|..|.|..++..-...- --||+|...++|.+|+-.|||..++||.+...+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45677788999999998877753332222 3699999999999999999999999999988764
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.84 E-value=0.0015 Score=62.73 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRK 214 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~ 214 (247)
....+||++|..|+....|.+.|..||.|..|.+-. |. -|++|.|++...++.|+..|.|.-|+| ++|.|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 345799999999999999999999999998876633 22 399999999999999999999999986 7899999
Q ss_pred ccccccc
Q 025814 215 SKWQERT 221 (247)
Q Consensus 215 a~~k~~~ 221 (247)
+..-...
T Consensus 528 a~~~~~~ 534 (975)
T KOG0112|consen 528 ASPPGAT 534 (975)
T ss_pred ccCCCCC
Confidence 8866554
No 125
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.74 E-value=0.0064 Score=57.83 Aligned_cols=10 Identities=30% Similarity=0.178 Sum_probs=3.9
Q ss_pred CCCCCCcccc
Q 025814 28 SYFPLPFHLQ 37 (247)
Q Consensus 28 ~~~p~p~~~~ 37 (247)
+..|+||.+|
T Consensus 555 g~PPPPpplP 564 (1102)
T KOG1924|consen 555 GPPPPPPPLP 564 (1102)
T ss_pred CCCccCCCCC
Confidence 3333333333
No 126
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.65 E-value=0.0036 Score=54.96 Aligned_cols=76 Identities=8% Similarity=0.181 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecC---CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK---RTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~---~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
..|.|.||.+.++.+.++.+|...|.|..+.|+-+. ......-.|||-|.+...+..|- .|.++.+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 379999999999999999999999999999886532 12233458999999999888886 77888777777777544
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.61 E-value=0.00089 Score=62.56 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
+-+..|||-.||..+++.++..+|...-.|++ |.|.+.+ +++.++.|||.|.+++++..|+..-+-..++.|.|+|+-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 33568999999999999999999998777776 7776664 788899999999998888888766556677889999965
Q ss_pred c
Q 025814 215 S 215 (247)
Q Consensus 215 a 215 (247)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 4
No 128
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.59 E-value=0.00094 Score=55.43 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=46.4
Q ss_pred cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 161 RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 161 ~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+||.|+.+.|-.+ ..-...|-.+|.|...++|++|+..|||..+.|+.|...+.
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 8999999876554 23345788999999999999999999999999999998775
No 129
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.57 E-value=0.0022 Score=58.95 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCEeEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV---GNRPIKL 212 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i---~g~~l~V 212 (247)
..+.|||.||-.-+|.-.|+.++. .+|.|... ++|+ -|..|||.|.+.++|.+.+.+|||..+ +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 356799999999999999999998 67777666 3342 245899999999999999999999976 5788888
Q ss_pred EEccc
Q 025814 213 RKSKW 217 (247)
Q Consensus 213 ~~a~~ 217 (247)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 88753
No 130
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.53 E-value=0.0075 Score=50.08 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccc----cccccCCC-------CCCCCCC
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSI----PRKAAGQT-------WEDPTLA 132 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~----~r~~~~~~-------~~~~~~~ 132 (247)
+.+..+....+......+|++||.|...+.+..|+.. ..+.++.+.+.... .+...... .......
T Consensus 140 g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (306)
T COG0724 140 GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKA 219 (306)
T ss_pred CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhcccccccc
Confidence 4454444455556778899999999999999999864 46788888877743 22221100 0011112
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 025814 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197 (247)
Q Consensus 133 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al 197 (247)
........+++++++..++...+...|..+|.+..+.+..........++.++.+.....+...+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 22455668999999999999999999999999977766655433334444554444444444444
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.51 E-value=0.0011 Score=57.19 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=65.6
Q ss_pred cEEEEcCCCCCCcHHHHH---HHhccCCCeeEEEEEecCC--CCCc-ceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 139 YRLFCGDLGNEVNDDVLS---KAFSRFPSFNMAKVVRDKR--TGKT-KGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~---~~F~~~G~i~~v~i~~~~~--tg~~-kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
.-+||-+|+..+.++++. +.|.+||.|..|.+.++.. .+.. -+-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 358888898887665553 6799999999998887752 1111 123799999999999999999999999999888
Q ss_pred EEccccccccHH
Q 025814 213 RKSKWQERTDFE 224 (247)
Q Consensus 213 ~~a~~k~~~~~~ 224 (247)
.+...+....+.
T Consensus 158 ~~gttkycs~~l 169 (327)
T KOG2068|consen 158 SLGTTKYCSFYL 169 (327)
T ss_pred hhCCCcchhHHh
Confidence 877766554333
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.43 E-value=0.00066 Score=65.02 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.....+||+|||+..+++.+|+..|..+|.|.+|.|-+-+ -+...-|+||.|.+...+-.|+.++.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4446689999999999999999999999999999886653 233334899999999999999999999988766666655
Q ss_pred c
Q 025814 215 S 215 (247)
Q Consensus 215 a 215 (247)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.23 E-value=0.025 Score=37.00 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=43.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccC---CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRF---PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM 200 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~---G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l 200 (247)
.|+|.|+.. ++.++|+.+|..| ....+|.++-|. -|-|.|.+.+.|.+||..|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 799999955 7778899999988 235688898884 5789999999999999764
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.93 E-value=0.041 Score=37.35 Aligned_cols=67 Identities=13% Similarity=0.332 Sum_probs=40.4
Q ss_pred EEEEc-CCCCCCcHHHHHHHhccCCCe-----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 140 RLFCG-DLGNEVNDDVLSKAFSRFPSF-----NMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 140 ~lfV~-nLp~~~~e~~L~~~F~~~G~i-----~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
++||. +--..++..+|..++...+.| -.|.|..+ |.||+... +.+..++..|++..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 46663 334568888999998876544 45666544 89998865 58889999999999999999998
Q ss_pred Ec
Q 025814 214 KS 215 (247)
Q Consensus 214 ~a 215 (247)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 135
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0077 Score=49.07 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=48.8
Q ss_pred CCCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccccc
Q 025814 64 APVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~ 121 (247)
-|||.+..+....+...+.+|+++||+|+..+++.+|++. +++-++.+++..+.+-+.
T Consensus 32 IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 32 IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 3678898988888888999999999999999888888764 578899999888776543
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=95.55 E-value=0.0037 Score=50.83 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=74.3
Q ss_pred ceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcC----CCCCCcHHHHHHH
Q 025814 86 AQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGD----LGNEVNDDVLSKA 158 (247)
Q Consensus 86 ~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~~e~~L~~~ 158 (247)
+++|.|+..-++.=|++. ..+.+.++.+ +++.|+ |...++++.+.+.
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--------------------------~~r~G~shapld~r~~~ei~~~v 104 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--------------------------TLRCGNSHAPLDERVTEEILYEV 104 (267)
T ss_pred eeeeecccccchhhhhhhcccchhccchhhc--------------------------ccccCCCcchhhhhcchhhheee
Confidence 899999988777766654 4555555544 677887 8888999999999
Q ss_pred hccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 159 FSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 159 F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
|+.-|.+..+++.++. .|.++.++|+.+......-.++....+...
T Consensus 105 ~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 105 FSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 9999999999999886 488899999999887777777777666543
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=0.09 Score=44.89 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=50.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe-EEEEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP-IKLRK 214 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~-l~V~~ 214 (247)
+.-|-|.++++.-. ..|..+|++||.|.+.... ..-.+-+|.|.+.-+|++|| ..||..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 34566668888644 5577899999998765332 22238899999999999999 56999998754 44544
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.42 E-value=0.038 Score=44.17 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEEe---cCC-CCC-cceEEEEEecCHHHHHHHHHHhCCceeC---C
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVVR---DKR-TGK-TKGYGFISFANPSDIAAALKEMNGKYVG---N 207 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~-~G~i~~v~i~~---~~~-tg~-~kg~~FV~f~~~~~a~~Al~~l~g~~i~---g 207 (247)
....|.|++||+.++++++.+.+.. ++....+..+. +.. ... .-.-|||.|.+.+++..-...++|..+. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999987776 66653222222 211 111 2245899999999999999999998653 2
Q ss_pred --EeEEEEEccc
Q 025814 208 --RPIKLRKSKW 217 (247)
Q Consensus 208 --~~l~V~~a~~ 217 (247)
..-.|++|-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455666643
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.42 E-value=0.23 Score=36.50 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=48.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
.+.+...++.++.++|..+.+.+- .|..++|++|. ..++-.+.+.|.+.++|..-...+||..++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455566666677776666554 56788999983 2355578999999999999999999997653
No 140
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.33 E-value=0.012 Score=52.87 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCc-HHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 137 NDYRLFCGDLGNEVN-DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~-e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+.+.|-+.-.++..+ -.+|..+|.+||.|..|.|-... -.|.|+|.+..+|-.|. ...+..|+||-|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 344555555666654 47899999999999998775442 26899999999997787 67899999999999998
Q ss_pred cc
Q 025814 216 KW 217 (247)
Q Consensus 216 ~~ 217 (247)
+.
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 141
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.00 E-value=0.068 Score=49.19 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=55.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhc--cCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCEeEEEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFS--RFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK--YVGNRPIKLR 213 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~--~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~--~i~g~~l~V~ 213 (247)
.|.|.|+-|+...-.++++.+|. .|-.+++|.+-.+- -=||+|++..||+.|.+.|... +|.|+.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 45677889999999999999996 48888888876552 3589999999999998877653 5667776654
Q ss_pred E
Q 025814 214 K 214 (247)
Q Consensus 214 ~ 214 (247)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 4
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.60 E-value=0.0026 Score=56.36 Aligned_cols=117 Identities=14% Similarity=0.256 Sum_probs=91.0
Q ss_pred hhcCCCceeeCccCHHHHHHHHhc----CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q 025814 80 QLFQRDAQTITPEALESVKAALAS----SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVL 155 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L 155 (247)
-++..+++|+...+..-+.+++.. .++.|+..++....+++.+.. .+-|.|++....++.|
T Consensus 33 fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr---------------k~Qirnippql~wevl 97 (584)
T KOG2193|consen 33 FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR---------------KIQIRNIPPQLQWEVL 97 (584)
T ss_pred eeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh---------------hhhHhcCCHHHHHHHH
Confidence 345688899998887777777653 266777777776666654433 5889999999999999
Q ss_pred HHHhccCCCeeEEEEE-ecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 156 SKAFSRFPSFNMAKVV-RDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 156 ~~~F~~~G~i~~v~i~-~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
..++.+||.+..|..+ .|..| -..-|+|...+.+..||..+||..+....++|.|-
T Consensus 98 d~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 98 DSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 9999999999988653 33332 12236788999999999999999999999999775
No 143
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.13 E-value=0.16 Score=40.94 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEeEEEEEcccc
Q 025814 151 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN--GKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 151 ~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~--g~~i~g~~l~V~~a~~k 218 (247)
..+.|+.+|..|+.+..+.+++.- +=..|.|.+.++|.+|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 447899999999999888776541 236799999999999999999 99999999999988543
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.85 E-value=0.028 Score=48.41 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|++++.+.+.+.++..++..+|.+....+........++|++.+.|...+.+..||.......+.++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4568999999999999999999999998888877776678899999999999999999999543334666666555444
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=0.17 Score=46.53 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=58.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHh-ccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---C-CEeEEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV---G-NRPIKL 212 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i---~-g~~l~V 212 (247)
.+++.|.|++...|-..|...- ...|.-..+.+..|=.+....|||||.|.+.+++..+.+++||+.+ + .+...+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3456666666665555444432 2356667788888866666789999999999999999999999954 3 355666
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
.||+-..
T Consensus 468 tYArIQG 474 (549)
T KOG4660|consen 468 TYARIQG 474 (549)
T ss_pred ehhhhhc
Confidence 7776443
No 146
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=93.11 E-value=0.068 Score=41.26 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=45.7
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccccc
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~ 121 (247)
+++.+..+....+..+..+++++||+|++.++|.+|++. ..++++.+.++....+..
T Consensus 57 ~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 57 HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 347777777777777888999999999999999999863 578888888877665543
No 147
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.07 E-value=0.53 Score=36.03 Aligned_cols=68 Identities=9% Similarity=0.125 Sum_probs=48.4
Q ss_pred cEEEEcCCCCCC----cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 139 YRLFCGDLGNEV----NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 139 ~~lfV~nLp~~~----~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
.+|.|.=|..++ +-..+...++.||+|.+|.+. |+ .-|.|.|.+..+|-+|+.++.. ..-|..+...+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 478887554443 334455667899999999763 33 2689999999999999988776 44566666655
No 148
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=91.98 E-value=0.12 Score=44.79 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=35.4
Q ss_pred cCCCceeeCccCHHHHHHH---HhcCccchhhhhhcccccccccCCC
Q 025814 82 FQRDAQTITPEALESVKAA---LASSDIEHKAETKKKSIPRKAAGQT 125 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~a---l~~~~~~~~~~~~~~~~~r~~~~~~ 125 (247)
-+||++|||++..+++++| |.+..++||.+++..+..|-...+.
T Consensus 134 GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 134 GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKK 180 (376)
T ss_pred CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCc
Confidence 4599999999987777766 5677999999999999888655443
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.75 E-value=0.49 Score=42.68 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=56.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcce-EEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKG-YGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg-~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
+..|+|-.+|..++-.||..|...|- .|.+++|+||. .... ...|.|.+.++|..-.+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 56899999999999999999987654 57899999973 2222 47899999999999999999997754
No 150
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.55 Score=43.64 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccC----CCeeEEEEEecC----------CCCC---------------------
Q 025814 135 PENDYRLFCGDLGNE-VNDDVLSKAFSRF----PSFNMAKVVRDK----------RTGK--------------------- 178 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~----G~i~~v~i~~~~----------~tg~--------------------- 178 (247)
....++|-|.||.|. +...+|..+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999997 7889999998765 588888875421 1121
Q ss_pred ---------------cce-EEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEE
Q 025814 179 ---------------TKG-YGFISFANPSDIAAALKEMNGKYVGN--RPIKLRK 214 (247)
Q Consensus 179 ---------------~kg-~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~ 214 (247)
.+. ||.|+|.+.+.|.+.+..++|.++.. ..|-+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 122 58999999999999999999998874 4444443
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.32 E-value=1.6 Score=28.96 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 149 EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 149 ~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
.++-++|+..+..|+-. +|..|+ | | =||.|.+..+|++|....||..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999642 344453 3 2 379999999999999999999988887765
No 152
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.81 E-value=0.26 Score=47.69 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=64.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCEeEEEEEc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV--GNRPIKLRKS 215 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i--~g~~l~V~~a 215 (247)
.-+.++.|..-..+...|..+|..||.|.+++.++|-. .+.|+|...+.|-.|+.+++|.++ -|-..+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 33577778888889999999999999999999988732 799999999999999999999964 5788899888
Q ss_pred ccc
Q 025814 216 KWQ 218 (247)
Q Consensus 216 ~~k 218 (247)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 754
No 153
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=88.72 E-value=0.26 Score=40.78 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=41.2
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKK 115 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~ 115 (247)
||.|...-+.-|..+..++|++||||.+.+++.+|.... -|+||......
T Consensus 36 fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 36 FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 478888888889999999999999999999999998764 56776655433
No 154
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.83 E-value=0.31 Score=39.57 Aligned_cols=51 Identities=8% Similarity=-0.049 Sum_probs=40.3
Q ss_pred CCccccccccchhhhcCCCceeeCcc---CHHHHHHHHhcCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPE---ALESVKAALASSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~a~~al~~~~~~~~~~~~~~~~ 117 (247)
|.|-++-...+..+..++|++||.|- ++++|.++|++..++++++++..+.
T Consensus 38 G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 38 GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 67777777778889999999999997 5666666677778999998776544
No 155
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=87.76 E-value=1.3 Score=37.22 Aligned_cols=96 Identities=32% Similarity=0.524 Sum_probs=76.3
Q ss_pred cccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHH-H--HHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 025814 116 SIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDV-L--SKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSD 192 (247)
Q Consensus 116 ~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~-L--~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~ 192 (247)
...+......|.++....+.+.-..+|++|+-..+..+- | ...|+.+-.+...++++++ -+.-++++|+.|.....
T Consensus 74 av~~~s~~a~~~~Pt~l~~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a 152 (290)
T KOG0226|consen 74 AVGRKSAPAVWADPTLLAPAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDA 152 (290)
T ss_pred hccccccccccCCCccCCCCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhh
Confidence 334556677788888888888888999999988877765 4 7888888888888888885 57788999999998888
Q ss_pred HHHHHHHhCCceeCCEeEEE
Q 025814 193 IAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 193 a~~Al~~l~g~~i~g~~l~V 212 (247)
...+-..-+++.++-+.|++
T Consensus 153 ~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 153 LLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred hhhhccccccccccCcceee
Confidence 88887777777777766555
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.34 E-value=0.076 Score=46.87 Aligned_cols=69 Identities=13% Similarity=0.021 Sum_probs=53.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
++|+|++|...+...++.+.|..+|.|....+- .|...-+|-|+|....+...|+ .++|.++.-....+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRR 220 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-Hhcchhhhhhhhhh
Confidence 579999999999999999999999998766553 3444558889999988988898 56777655333333
No 157
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=85.63 E-value=0.51 Score=39.27 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhh
Q 025814 64 APVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETK 113 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~ 113 (247)
-|++++.-+-+..+..++.+||++||+|++-++|.+|++. ...+...+++
T Consensus 211 ~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 211 RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 4567777777788889999999999999998888888764 3444444333
No 158
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.48 E-value=3.2 Score=37.15 Aligned_cols=54 Identities=26% Similarity=0.216 Sum_probs=46.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i-~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~ 198 (247)
...|=|.++|.....+||...|+.||.- .+|+++-|. .+|..|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4578899999999999999999999753 567777774 79999999999999983
No 159
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=77.21 E-value=3.7 Score=27.37 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 153 DVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 153 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
++|.+.|...| .+.++..++.+.++..--.-||+.....+... .|+=..|+|++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46777888887 57788888777666555677888765433222 3455578899988876543
No 160
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.30 E-value=5 Score=26.68 Aligned_cols=63 Identities=8% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 153 DVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 153 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
++|.+.|...| .|..+.-+..+.++..--.-||++....+... .++=..++|..|+|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777777777 57777777776566666678888876554332 34555788999999876543
No 161
>smart00361 RRM_1 RNA recognition motif.
Probab=76.21 E-value=1.6 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCCccccc-cccchhh--hcCCCceeeCccCHHHHHHHHhc---Cccchhh
Q 025814 66 VAPVYSLP-QYHQAQQ--LFQRDAQTITPEALESVKAALAS---SDIEHKA 110 (247)
Q Consensus 66 ~~~~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~ 110 (247)
+|.+..+- ...+... ..++|++||+|++.++|.+|+.. ..+.++.
T Consensus 16 fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 16 FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 35555542 2333333 67899999999999999888763 3444443
No 162
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.86 E-value=14 Score=31.77 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCee-EEEEEecCCCCCcceEEEEEecCH-------HHHHHHHHHhC
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFN-MAKVVRDKRTGKTKGYGFISFANP-------SDIAAALKEMN 201 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~~FV~f~~~-------~~a~~Al~~l~ 201 (247)
.-||++||+.++.-.||+..+...|.+- ++.+ ..+.|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4599999999999999999998877542 2222 12345789999654 45555555443
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.23 E-value=2.8 Score=29.45 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=39.4
Q ss_pred eeeCccCHHHHHHHHhcC----ccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHh
Q 025814 87 QTITPEALESVKAALASS----DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAF 159 (247)
Q Consensus 87 ~~v~~~~~~~a~~al~~~----~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F 159 (247)
+.|||++..-|..-+... .+++....+...-.-....... ........++|-|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~----qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF----QVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE----EEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 478999998888887653 2333333222211111000000 00113445689999999999999998664
No 164
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.87 E-value=4.8 Score=32.10 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred EEEEcCCCCCCcHH-----HHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-eEEEE
Q 025814 140 RLFCGDLGNEVNDD-----VLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNR-PIKLR 213 (247)
Q Consensus 140 ~lfV~nLp~~~~e~-----~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~-~l~V~ 213 (247)
.+++.+++..+..+ ....+|.+|.......+++. .++--|.|.+++.+.+|...+++..+.|+ .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 57777777664332 33456666655444444332 23455789999999999999999999988 78877
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
++....
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 776543
No 165
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=63.32 E-value=44 Score=31.05 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=13.9
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEE
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v 168 (247)
+=+..|+..-.-++|..-..+-|.++.|
T Consensus 484 ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 484 VETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred eeeccCcCcccHHHHHHHHHhccccccc
Confidence 3344455444445555555555555444
No 166
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.27 E-value=1.5 Score=39.67 Aligned_cols=77 Identities=9% Similarity=-0.129 Sum_probs=60.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
+.|+..|+-..+++++.-+|.-||.|..+.+.+.-..|..+-.+||.... .++..+|..+....+.|..++|.++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 46777889999999999999999999988776654556666678887654 677788877777778888888877653
No 167
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=61.89 E-value=19 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.329 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEec
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA 188 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~ 188 (247)
-|||||++..+.|.-...+.+..+.-.-+-+..+ .+ ..||.|-.+.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeC
Confidence 5999999999999888888776665554545544 22 6789998773
No 168
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.87 E-value=9.6 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=27.2
Q ss_pred CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHH
Q 025814 150 VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFAN-PSDIAAAL 197 (247)
Q Consensus 150 ~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~-~~~a~~Al 197 (247)
++.++|.+.|+.|..++ ++.+.+. ..+.|+++|.|.+ -.-...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 45578999999998875 6666664 3678899999974 44445555
No 169
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.28 E-value=23 Score=30.56 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=57.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCC-------CCCcceEEEEEecCHHHHHHH----HHHhCCc--e
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKR-------TGKTKGYGFISFANPSDIAAA----LKEMNGK--Y 204 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~-------tg~~kg~~FV~f~~~~~a~~A----l~~l~g~--~ 204 (247)
.+.|...|+..+++=..+...|-.||.|++|.++.+.. .........+.|-+.+.+..- ++.|+.. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 34688899999999889999999999999999998741 122335678899888776543 3333333 4
Q ss_pred eCCEeEEEEEcc
Q 025814 205 VGNRPIKLRKSK 216 (247)
Q Consensus 205 i~g~~l~V~~a~ 216 (247)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667777777654
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=59.55 E-value=16 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
-||||+++..+.|.-...+-+.++.-.-+-+..+ +. ..||.|-.+.+
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~-eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NT-ESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CC-CCCcEEEecCC
Confidence 5999999999998877776666655443444443 23 33999988764
No 171
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=59.18 E-value=7.7 Score=29.57 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=38.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKK 114 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~ 114 (247)
|.+.++..+.+-.+.+.+|+++|.++..+.+.+|+.. .++-+..+.++
T Consensus 97 GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 97 GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 8899999999999999999999999987777777654 45555555553
No 172
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.06 E-value=8.2 Score=32.96 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCCC------------CcHHHHHHHhccCCCeeEEEEEe-c----CCCCCc-----ceEEE---------
Q 025814 136 ENDYRLFCGDLGNE------------VNDDVLSKAFSRFPSFNMAKVVR-D----KRTGKT-----KGYGF--------- 184 (247)
Q Consensus 136 ~~~~~lfV~nLp~~------------~~e~~L~~~F~~~G~i~~v~i~~-~----~~tg~~-----kg~~F--------- 184 (247)
+...+||+.+||-. -+++.|+..|+.||.|..|.|.. | .-+|+. .||||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 33458888888753 35788999999999998887743 2 234443 44543
Q ss_pred EEecCHHHHHHHHHHhCCce
Q 025814 185 ISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 185 V~f~~~~~a~~Al~~l~g~~ 204 (247)
|.|..-.-...|+..|.|..
T Consensus 227 vqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHhHHHHHHHHhcch
Confidence 34433334445566666653
No 173
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=56.63 E-value=7 Score=33.67 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=42.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
|+|.-+-.+.+..++.++|++||.|+...+++.|.. +..|+++.+-++...
T Consensus 126 G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 126 GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 778888888888899999999999999999888875 346788877776543
No 174
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=55.65 E-value=8.2 Score=35.35 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=45.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
+++.++....|..++..+|++|+.|.+.+.+..|+. +.++.++.+++.....+..
T Consensus 43 g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 43 GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 778888888899999999999999999888877764 5688899888877765544
No 175
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.24 E-value=7.8 Score=32.25 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v 168 (247)
...+||+-|+|..++++.|.++.+++|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34489999999999999999999999976544
No 176
>PRK11901 hypothetical protein; Reviewed
Probab=52.68 E-value=49 Score=29.04 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEE--EEEecCHHHHHHHHHHhCCc
Q 025814 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG--FISFANPSDIAAALKEMNGK 203 (247)
Q Consensus 133 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~--FV~f~~~~~a~~Al~~l~g~ 203 (247)
......++|-|..+ -+++.|..|...++ +..+++++-...|+.- |. +-.|.+.++|..|+..|-..
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34566667777654 45777888887775 4556666654455543 33 34789999999999887654
No 177
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.02 E-value=2.3 Score=39.55 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=51.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
.|.||+.|+.+.++-.+|..++..+-.+..+.+..+.......-+++|.|.---....|+-+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 467999999999999999999988876666655443222333457899998777777777778877554
No 178
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=51.23 E-value=10 Score=30.24 Aligned_cols=50 Identities=18% Similarity=0.010 Sum_probs=33.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCH---HHHHHHHhcCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEAL---ESVKAALASSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~a~~al~~~~~~~~~~~~~~~~~r~~ 121 (247)
+++.++++-. ...+++||+|++. ++|..+|++..+.+..+++....-+..
T Consensus 35 G~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 35 GPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4444544432 4589999999965 555555677888888887766554433
No 179
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.33 E-value=39 Score=34.92 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=14.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v 168 (247)
+++|--+-..+-.+.|+++.+.|+...++
T Consensus 74 ~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 74 TLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred heeeeccCCCCCHHHHHhhhCccccchhh
Confidence 44554444455555555555555544443
No 180
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.34 E-value=42 Score=21.87 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHhccCCCeeEEEE
Q 025814 153 DVLSKAFSRFPSFNMAKV 170 (247)
Q Consensus 153 ~~L~~~F~~~G~i~~v~i 170 (247)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999975544
No 181
>PLN03120 nucleic acid binding protein; Provisional
Probab=44.45 E-value=15 Score=31.23 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=34.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~ 117 (247)
|.|..+....+.. .++++||+|++.++++.||.. ..+.++.+.+....
T Consensus 29 G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 29 GDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 5565555444332 479999999999999999853 46778887776643
No 182
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.44 E-value=82 Score=28.62 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.7
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEE
Q 025814 182 YGFISFANPSDIAAALKEMNGKYVGN--RPIKLRK 214 (247)
Q Consensus 182 ~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~ 214 (247)
||.|++.+.+.+...+..++|.++.. ..+-+++
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 68899999999999999999997754 3444443
No 183
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.72 E-value=14 Score=33.20 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=48.4
Q ss_pred cEEEEcCCCCCCcHH--------HHHHHhcc--CCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 025814 139 YRLFCGDLGNEVNDD--------VLSKAFSR--FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~--------~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~ 198 (247)
+.+|+.++...-..+ ++..+|.. .+.+..+..-++.....++|--|++|.....+++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 457887776665544 89999998 6777888888886677888999999999999998873
No 184
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=39.14 E-value=1e+02 Score=21.31 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=25.9
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEec----CHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA----NPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 141 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~----~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
|-.|+|.++-.- +++--++.-..|-++.| +|..| -|||.|+ +.+....+++.+..-.+.-+.|.|.
T Consensus 3 lkfg~It~eeA~-~~QYeLsk~~~vyRvFi-----NgYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELSKNEAVYRVFI-----NGYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHH-HHHHHhhcccceeeeee-----ccccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 334666554322 23333555566666655 56666 6899997 4578888899998888888888773
No 185
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=39.14 E-value=28 Score=24.33 Aligned_cols=47 Identities=11% Similarity=0.287 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEEecCCCCCcceEEEEEecC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
-||||+++..+.|.-...+-+. .+.-.-+-+..+ ....||.|-.+.+
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 5999999999988755555554 233222223333 3355788887754
No 186
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=37.16 E-value=3.3e+02 Score=24.90 Aligned_cols=9 Identities=33% Similarity=0.368 Sum_probs=3.5
Q ss_pred cHHHHHHHh
Q 025814 151 NDDVLSKAF 159 (247)
Q Consensus 151 ~e~~L~~~F 159 (247)
|.+|....|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 334444333
No 187
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=36.27 E-value=1.4e+02 Score=28.26 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=7.1
Q ss_pred CceeCCEeEE
Q 025814 202 GKYVGNRPIK 211 (247)
Q Consensus 202 g~~i~g~~l~ 211 (247)
|....|+.|+
T Consensus 427 GLn~~Gqsir 436 (582)
T PF03276_consen 427 GLNARGQSIR 436 (582)
T ss_pred Cccccccccc
Confidence 5556788888
No 188
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.62 E-value=49 Score=26.51 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=34.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEEecCCCC--CcceEEEEEecCHHHHHHHHHH
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRF-PSFNMAKVVRDKRTG--KTKGYGFISFANPSDIAAALKE 199 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~i~~~~~tg--~~kg~~FV~f~~~~~a~~Al~~ 199 (247)
+++|.. .+++.|..+..-- |.+.+|..-+. ..+ ..+|--||+|...+.+.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456654 4554444433211 67777765443 233 4578889999999999887753
No 189
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.51 E-value=60 Score=29.05 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=44.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEEecCC-C-CCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVVRDKR-T-GKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~i~~~~~-t-g~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
..|-|.+||...++.+|.+....|-.=.. ..+..... . ..-.+.+||.|...++...-...++|.++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46889999999999999888777543222 22221110 0 11246789999999998777777888743
No 190
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=34.62 E-value=4.2 Score=32.56 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=39.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKKS 116 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~~ 116 (247)
|.+.++-..++..++-++|++|+.+|+..+..=|+ ++..+.++.++++..
T Consensus 60 Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 60 GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 88889999999999999999999999987765544 455677777776543
No 191
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.22 E-value=64 Score=22.12 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.1
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCce
Q 025814 178 KTKGYGFISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 178 ~~kg~~FV~f~~~~~a~~Al~~l~g~~ 204 (247)
..+||-||+=.+..++..|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999998766643
No 192
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=30.07 E-value=77 Score=26.62 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCcH----HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEec-CHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 139 YRLFCGDLGNEVND----DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA-NPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 139 ~~lfV~nLp~~~~e----~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~-~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
..||||+|-...-- +.|...+..- .+.++.-.......|||.-..+ +.++...+++.+.+..+.-..+-|.
T Consensus 38 ~vvfiGGLgdgLl~~~y~~~L~~~lde~----~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~G 113 (299)
T KOG4840|consen 38 KVVFIGGLGDGLLICLYTTMLNRYLDEN----SWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVG 113 (299)
T ss_pred EEEEEcccCCCccccccHHHHHHHHhhc----cceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEe
Confidence 36999998766422 3343333322 2222222111223456654443 6788888888776665554555555
Q ss_pred Eccc
Q 025814 214 KSKW 217 (247)
Q Consensus 214 ~a~~ 217 (247)
.+.+
T Consensus 114 hSTG 117 (299)
T KOG4840|consen 114 HSTG 117 (299)
T ss_pred cCcc
Confidence 5544
No 193
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=29.38 E-value=1.9e+02 Score=26.32 Aligned_cols=6 Identities=67% Similarity=1.259 Sum_probs=2.6
Q ss_pred HHHhCC
Q 025814 197 LKEMNG 202 (247)
Q Consensus 197 l~~l~g 202 (247)
+++|.|
T Consensus 480 MkEM~g 485 (487)
T KOG4672|consen 480 MKEMDG 485 (487)
T ss_pred HHHHhc
Confidence 344444
No 194
>PLN03213 repressor of silencing 3; Provisional
Probab=29.03 E-value=26 Score=32.47 Aligned_cols=49 Identities=8% Similarity=-0.064 Sum_probs=34.0
Q ss_pred CCCccccccccchhhhcCCCceeeCccCH-----HHHHHHHhcCccchhhhhhccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEAL-----ESVKAALASSDIEHKAETKKKSIP 118 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~a~~al~~~~~~~~~~~~~~~~~ 118 (247)
+|.|..+...+. ++ |+++||++... +.+..+|++.++.|+.+++..+.+
T Consensus 34 FGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 34 MGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 477777666532 22 99999999854 444555667788888888877654
No 195
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=29.01 E-value=44 Score=27.36 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=25.6
Q ss_pred cccchhhhcCCCceeeCccCHHHHHHH---HhcCccchh
Q 025814 74 QYHQAQQLFQRDAQTITPEALESVKAA---LASSDIEHK 109 (247)
Q Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~a~~a---l~~~~~~~~ 109 (247)
..+...++-++|++||.|++.+.|.-+ |++.-+-++
T Consensus 82 lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 82 LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 345667889999999999987777655 444444444
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.50 E-value=1.9e+02 Score=25.83 Aligned_cols=8 Identities=0% Similarity=0.140 Sum_probs=2.9
Q ss_pred cHHHHHHH
Q 025814 151 NDDVLSKA 158 (247)
Q Consensus 151 ~e~~L~~~ 158 (247)
+|.+++++
T Consensus 358 SeAEFEdi 365 (498)
T KOG4849|consen 358 SEAEFEDI 365 (498)
T ss_pred hHHHHHHH
Confidence 33333333
No 197
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.94 E-value=44 Score=29.00 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=26.4
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 183 GFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 183 ~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
|||+|++..+|+.|++.+.... ++.++++.|-..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999998655443 455677766544433
No 198
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=26.93 E-value=65 Score=27.17 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=23.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhc--cCCCeeEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFS--RFPSFNMA 168 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~--~~G~i~~v 168 (247)
...++|||||+.++..-|.+++. .||.+.-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 45799999999999999999986 45544333
No 199
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.44 E-value=23 Score=22.48 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=17.8
Q ss_pred cceEEEEEecC-HHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 179 TKGYGFISFAN-PSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 179 ~kg~~FV~f~~-~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.+|||||...+ .++.--.-..|++. ++|-++.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 57899999886 22211122234433 355566665554
No 200
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=25.87 E-value=2.4e+02 Score=27.32 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=51.2
Q ss_pred cEEEEc-CCCCCCcHHHHHHHhccCCCee-----EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 139 YRLFCG-DLGNEVNDDVLSKAFSRFPSFN-----MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 139 ~~lfV~-nLp~~~~e~~L~~~F~~~G~i~-----~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
.++||. +--..++..+|..++..-+.|. .|.|..+ |.||+... ..+...+..|++..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 356664 3455688888988887766553 3455433 88998864 6688889999999999999999
Q ss_pred EEcc
Q 025814 213 RKSK 216 (247)
Q Consensus 213 ~~a~ 216 (247)
+.++
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9874
No 201
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=24.61 E-value=1e+02 Score=20.20 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=24.4
Q ss_pred CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEE
Q 025814 150 VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFI 185 (247)
Q Consensus 150 ~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV 185 (247)
.-|.+|.++|-.--.|.++.++-.+.-++ |-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 45677888998888999998887654444 44554
No 202
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=24.33 E-value=41 Score=32.24 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
+||+-|-...-+..-+..++..++.+...+++.....+..-+-++++|..+..+..|. .|.+..+..+.+++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 6788777777777888888999999988888877666665557899999999887776 66676666555554
No 203
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=24.26 E-value=2.8e+02 Score=29.13 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCCCCCC--CCCCcCCCCCCCCCCC--ccCCCCCCCCccccCCCCCCC---CCCCCCCCCCCCCCCC
Q 025814 1 MSMPQSS--SSSGQFTYAAAPAAPT--TANSSYFPLPFHLQQTDPTAV---SQYPPPAAYPAPVVPS 60 (247)
Q Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~p~p~~~~~~~~~~~---~~~~~~~~~~ap~~P~ 60 (247)
.+..+|+ +|=+.++.+-.|.+|. ...++|.|.-|.-.+..|.+. +-|.|.-|-+.|..|+
T Consensus 1504 tspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptsp~ysptsps 1570 (1605)
T KOG0260|consen 1504 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1570 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 204
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.98 E-value=78 Score=32.92 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=6.4
Q ss_pred CcEEEEcCCCC
Q 025814 138 DYRLFCGDLGN 148 (247)
Q Consensus 138 ~~~lfV~nLp~ 148 (247)
+.+-|+|.|.+
T Consensus 107 Dkrs~lgalky 117 (2365)
T COG5178 107 DKRSYLGALKY 117 (2365)
T ss_pred hhHhhhhhhhh
Confidence 44567766644
No 205
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.64 E-value=2.8e+02 Score=20.68 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=25.3
Q ss_pred CCcHHHHHHHhcc-C---CCeeEEEEEec-CCCCCcceEEEEEecCHHHHH
Q 025814 149 EVNDDVLSKAFSR-F---PSFNMAKVVRD-KRTGKTKGYGFISFANPSDIA 194 (247)
Q Consensus 149 ~~~e~~L~~~F~~-~---G~i~~v~i~~~-~~tg~~kg~~FV~f~~~~~a~ 194 (247)
.+..+||++-+.. | -....+.=.+. -..|++.|||.| |++.+.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 3667777765543 2 22333332332 246788889976 66666554
No 206
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.44 E-value=1.3e+02 Score=21.23 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCcHHHHH---HHhccCCCeeEEEE--EecCCCCCcceEEEEEe
Q 025814 140 RLFCGDLGNEVNDDVLS---KAFSRFPSFNMAKV--VRDKRTGKTKGYGFISF 187 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~---~~F~~~G~i~~v~i--~~~~~tg~~kg~~FV~f 187 (247)
..|+.|||.++.+..+. ..|..++.-..|.+ ......+.+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 57899999999887664 55555554333333 12234566777775544
No 207
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.28 E-value=2.7e+02 Score=20.32 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=40.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEec--C------HHHHHHHHHHhCCceeCCEeEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA--N------PSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~--~------~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
.||||+++...+.+.|++. .+..|.++.-... .....|+-++.+. + .+....++..++...-.|.+|-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 5999999877765555442 3344444422111 1123444444442 2 1233455555555555677777
Q ss_pred EEEccccccc
Q 025814 212 LRKSKWQERT 221 (247)
Q Consensus 212 V~~a~~k~~~ 221 (247)
|.=..+..|.
T Consensus 83 VHC~~G~~RS 92 (138)
T smart00195 83 VHCQAGVSRS 92 (138)
T ss_pred EECCCCCchH
Confidence 7655555554
No 208
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.59 E-value=1.1e+02 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.6
Q ss_pred EEEEEecCHHHHHHHHHHhCCce
Q 025814 182 YGFISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 182 ~~FV~f~~~~~a~~Al~~l~g~~ 204 (247)
+.+|.|.+..+|-+|-+.|....
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~g 25 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNG 25 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCC
Confidence 68999999999988877766543
No 209
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.50 E-value=1.2e+02 Score=25.75 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=25.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEE
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 171 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~ 171 (247)
...|+|||+.++..-|..++...-.+....++
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 67899999999999999998876555444443
No 210
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.49 E-value=2.4e+02 Score=18.53 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCc-ceEEEEEecCHHHHHHHHHHh
Q 025814 153 DVLSKAFSRFPSFNMAKVVRDKRTGKT-KGYGFISFANPSDIAAALKEM 200 (247)
Q Consensus 153 ~~L~~~F~~~G~i~~v~i~~~~~tg~~-kg~~FV~f~~~~~a~~Al~~l 200 (247)
.+|.+.+..+| +.-+++ +|.. -++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45667778888 444444 3332 236777787888888877665
No 211
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.29 E-value=1.9e+02 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=19.7
Q ss_pred eeEEEEEecCCCCCcceEEEEEecC
Q 025814 165 FNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 165 i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
|.+|+|..-...|+.+|||=|+|++
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5677776655558999999999976
No 212
>PLN03121 nucleic acid binding protein; Provisional
Probab=21.58 E-value=59 Score=27.36 Aligned_cols=46 Identities=7% Similarity=-0.017 Sum_probs=32.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~ 115 (247)
|.|..+....+. ..++++||+|++.+.++.|+.. ..+.++.+.+..
T Consensus 30 G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 30 GAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 666666555542 3457999999999999999854 466666665544
No 213
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.78 E-value=80 Score=30.00 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=43.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r 119 (247)
+.|....++.++...--++++|||+...+.|.+||+. .++.++.|.+.++...
T Consensus 430 GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 430 GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 7777777777777777899999999999999999864 4788888887776543
No 214
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.73 E-value=3e+02 Score=21.96 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=40.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCC-CcceEEEEEecCHHHHHHHHHHh
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG-KTKGYGFISFANPSDIAAALKEM 200 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg-~~kg~~FV~f~~~~~a~~Al~~l 200 (247)
.=||+|....-.-..|-+.|...|. .|.++..+.+- ...++-.+.+.+.++...++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 4689999999888899999888885 56666654322 24578899999999998888754
No 215
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.20 E-value=70 Score=18.42 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=10.2
Q ss_pred CCCcHHHHHHHhccCC
Q 025814 148 NEVNDDVLSKAFSRFP 163 (247)
Q Consensus 148 ~~~~e~~L~~~F~~~G 163 (247)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998754
Done!