Query 025814
Match_columns 247
No_of_seqs 288 out of 2036
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.9E-24 2E-28 153.7 11.7 83 135-217 16-98 (99)
2 2kn4_A Immunoglobulin G-bindin 99.9 4.8E-23 1.6E-27 161.0 10.2 137 82-219 11-151 (158)
3 3s8s_A Histone-lysine N-methyl 99.9 1.4E-22 4.7E-27 149.3 12.0 84 136-219 4-87 (110)
4 2cjk_A Nuclear polyadenylated 99.9 1.8E-23 6.1E-28 164.0 7.3 139 66-218 27-166 (167)
5 4f02_A Polyadenylate-binding p 99.9 2.8E-23 9.5E-28 170.2 8.8 140 67-219 40-182 (213)
6 3md3_A Nuclear and cytoplasmic 99.9 2.1E-22 7.3E-27 157.3 13.2 138 67-216 25-165 (166)
7 1l3k_A Heterogeneous nuclear r 99.9 1.9E-22 6.6E-27 162.1 11.8 147 67-221 38-186 (196)
8 3n9u_C Cleavage and polyadenyl 99.9 2.3E-22 7.7E-27 157.1 10.9 94 137-230 54-149 (156)
9 3md1_A Nuclear and cytoplasmic 99.9 8.7E-22 3E-26 137.2 12.1 81 139-219 2-82 (83)
10 1b7f_A Protein (SXL-lethal pro 99.9 8.1E-22 2.8E-26 154.5 13.0 136 67-215 28-168 (168)
11 2lxi_A RNA-binding protein 10; 99.9 5.3E-23 1.8E-27 146.4 5.4 83 139-221 2-86 (91)
12 2qfj_A FBP-interacting repress 99.9 9.3E-23 3.2E-27 166.4 7.4 151 67-219 53-206 (216)
13 2yh0_A Splicing factor U2AF 65 99.9 1.4E-21 4.6E-26 157.3 13.9 141 80-220 47-196 (198)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 9.5E-22 3.3E-26 138.2 11.4 83 136-218 4-86 (87)
15 2g4b_A Splicing factor U2AF 65 99.9 1.2E-21 4.2E-26 154.1 13.0 123 80-215 47-171 (172)
16 2lkz_A RNA-binding protein 5; 99.9 2.3E-22 8E-27 144.1 7.9 79 139-217 10-94 (95)
17 4f25_A Polyadenylate-binding p 99.9 1.2E-21 4.2E-26 145.2 11.2 81 138-220 5-85 (115)
18 2la6_A RNA-binding protein FUS 99.9 1.9E-21 6.6E-26 140.2 11.5 82 135-216 10-99 (99)
19 1fxl_A Paraneoplastic encephal 99.9 1.1E-21 3.9E-26 153.2 11.0 136 67-215 27-167 (167)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2E-21 6.7E-26 136.0 10.6 82 135-216 4-85 (85)
21 2jrs_A RNA-binding protein 39; 99.9 3.3E-21 1.1E-25 141.4 12.2 92 128-219 16-107 (108)
22 3p5t_L Cleavage and polyadenyl 99.9 2.5E-22 8.7E-27 142.4 5.9 81 139-219 2-84 (90)
23 2x1f_A MRNA 3'-END-processing 99.9 2.3E-21 7.8E-26 139.0 11.0 84 138-221 2-85 (96)
24 2cq0_A Eukaryotic translation 99.9 4.2E-21 1.4E-25 139.3 12.5 86 135-220 12-97 (103)
25 3ns6_A Eukaryotic translation 99.9 2.2E-22 7.6E-27 145.6 5.6 83 138-220 6-95 (100)
26 2e5h_A Zinc finger CCHC-type a 99.9 5.3E-21 1.8E-25 136.3 12.3 82 135-216 13-94 (94)
27 2dnz_A Probable RNA-binding pr 99.9 2.7E-21 9.3E-26 138.1 10.8 85 136-220 3-87 (95)
28 2do4_A Squamous cell carcinoma 99.9 8.3E-21 2.8E-25 137.0 13.3 85 135-220 14-98 (100)
29 2dgo_A Cytotoxic granule-assoc 99.9 7.3E-21 2.5E-25 140.8 13.3 86 135-220 12-97 (115)
30 2cpz_A CUG triplet repeat RNA- 99.9 5E-21 1.7E-25 141.7 12.4 86 135-220 22-107 (115)
31 1whw_A Hypothetical protein ri 99.9 3.1E-21 1.1E-25 138.9 10.9 86 135-220 5-90 (99)
32 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3E-21 1E-25 139.8 10.6 86 135-220 9-94 (102)
33 2dgs_A DAZ-associated protein 99.9 4.1E-21 1.4E-25 138.4 11.0 85 135-220 7-91 (99)
34 2cqc_A Arginine/serine-rich sp 99.9 7.7E-21 2.6E-25 135.7 12.3 83 135-217 12-94 (95)
35 1x5t_A Splicing factor 3B subu 99.9 2.6E-21 8.7E-26 138.6 9.4 85 136-220 3-88 (96)
36 2i2y_A Fusion protein consists 99.8 1.4E-21 4.8E-26 151.5 8.0 131 83-219 12-149 (150)
37 1x5u_A Splicing factor 3B subu 99.8 5.1E-21 1.8E-25 139.3 10.5 86 135-220 12-97 (105)
38 2cpf_A RNA binding motif prote 99.8 4.8E-21 1.7E-25 137.7 10.2 85 136-220 3-90 (98)
39 1p27_B RNA-binding protein 8A; 99.8 4.4E-21 1.5E-25 139.9 10.1 85 135-219 20-104 (106)
40 2khc_A Testis-specific RNP-typ 99.8 7.9E-21 2.7E-25 141.2 11.6 82 135-216 37-118 (118)
41 1x4h_A RNA-binding protein 28; 99.8 9.1E-21 3.1E-25 139.3 11.6 86 135-220 12-103 (111)
42 2dng_A Eukaryotic translation 99.8 1.6E-20 5.6E-25 136.2 12.6 84 135-220 12-95 (103)
43 1s79_A Lupus LA protein; RRM, 99.8 3.9E-21 1.3E-25 139.8 9.3 78 137-216 10-87 (103)
44 1fje_B Nucleolin RBD12, protei 99.8 7.3E-21 2.5E-25 150.4 11.6 125 78-218 48-174 (175)
45 2dnm_A SRP46 splicing factor; 99.8 4.3E-21 1.5E-25 139.3 9.3 86 135-220 10-95 (103)
46 1x5s_A Cold-inducible RNA-bind 99.8 5E-21 1.7E-25 138.6 9.6 86 135-220 9-94 (102)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-20 5.5E-25 136.6 12.4 85 135-220 12-99 (105)
48 1oo0_B CG8781-PA, drosophila Y 99.8 8.5E-21 2.9E-25 139.3 10.9 85 135-219 23-107 (110)
49 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-20 5.2E-25 143.7 12.6 86 135-220 39-124 (139)
50 2cpe_A RNA-binding protein EWS 99.8 1E-20 3.6E-25 139.5 11.2 86 135-220 12-105 (113)
51 3s7r_A Heterogeneous nuclear r 99.8 2.3E-20 7.7E-25 131.2 12.1 80 135-215 8-87 (87)
52 3ucg_A Polyadenylate-binding p 99.8 1.3E-20 4.3E-25 133.0 10.8 80 138-218 6-85 (89)
53 2cph_A RNA binding motif prote 99.8 1.3E-20 4.4E-25 137.5 11.0 86 135-220 12-99 (107)
54 2div_A TRNA selenocysteine ass 99.8 1E-20 3.5E-25 136.2 10.2 85 135-219 6-95 (99)
55 2dgp_A Bruno-like 4, RNA bindi 99.8 7.1E-21 2.4E-25 138.8 9.4 86 135-220 10-98 (106)
56 2d9p_A Polyadenylate-binding p 99.8 1.9E-20 6.6E-25 135.8 11.5 84 135-220 12-95 (103)
57 3smz_A Protein raver-1, ribonu 99.8 1.7E-20 5.9E-25 159.6 13.0 143 67-220 120-266 (284)
58 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-20 3.9E-25 138.7 10.0 87 133-220 20-106 (109)
59 1wi8_A EIF-4B, eukaryotic tran 99.8 1.3E-20 4.6E-25 136.9 10.1 83 136-220 13-96 (104)
60 2fy1_A RNA-binding motif prote 99.8 1.1E-20 3.8E-25 140.3 9.8 85 135-220 4-88 (116)
61 3ulh_A THO complex subunit 4; 99.8 3.1E-20 1.1E-24 135.6 12.0 81 135-216 26-106 (107)
62 2cq4_A RNA binding motif prote 99.8 7.3E-21 2.5E-25 140.6 8.6 82 137-219 24-105 (114)
63 4a8x_A RNA-binding protein wit 99.8 1.5E-20 5E-25 132.3 9.8 81 138-218 4-85 (88)
64 2dh8_A DAZ-associated protein 99.8 1.7E-20 5.8E-25 136.6 10.4 85 135-220 13-97 (105)
65 2cqp_A RNA-binding protein 12; 99.8 1.6E-20 5.6E-25 134.9 10.2 84 135-218 12-95 (98)
66 1p1t_A Cleavage stimulation fa 99.8 9.5E-21 3.2E-25 137.6 9.0 84 138-221 8-91 (104)
67 2kxn_B Transformer-2 protein h 99.8 9.4E-21 3.2E-25 143.4 9.2 84 135-218 43-126 (129)
68 2ywk_A Putative RNA-binding pr 99.8 2.1E-20 7.1E-25 133.5 10.5 81 135-216 13-93 (95)
69 2cqd_A RNA-binding region cont 99.8 3.4E-20 1.2E-24 137.4 11.8 84 135-219 14-97 (116)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.8E-21 1.3E-25 139.0 6.3 83 135-219 16-99 (100)
71 2cq3_A RNA-binding protein 9; 99.8 8.7E-20 3E-24 132.3 13.3 85 135-221 12-96 (103)
72 2do0_A HnRNP M, heterogeneous 99.8 5.6E-20 1.9E-24 135.7 12.4 83 135-218 12-94 (114)
73 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-20 7.9E-25 133.8 9.9 82 135-219 6-91 (96)
74 3nmr_A Cugbp ELAV-like family 99.8 2.4E-20 8.1E-25 146.9 10.9 137 67-216 28-175 (175)
75 2dhg_A TRNA selenocysteine ass 99.8 1.1E-20 3.7E-25 137.3 8.2 84 135-219 6-91 (104)
76 2m2b_A RNA-binding protein 10; 99.8 4.2E-21 1.4E-25 145.6 6.2 86 135-221 20-111 (131)
77 2lea_A Serine/arginine-rich sp 99.8 4.3E-21 1.5E-25 146.3 6.2 86 135-220 44-129 (135)
78 1x4e_A RNA binding motif, sing 99.8 3.8E-21 1.3E-25 134.6 5.4 81 136-216 3-83 (85)
79 2ek1_A RNA-binding protein 12; 99.8 1.4E-20 4.8E-25 134.4 8.5 81 136-216 13-93 (95)
80 3q2s_C Cleavage and polyadenyl 99.8 7.6E-21 2.6E-25 157.5 8.1 85 137-221 67-153 (229)
81 2dgw_A Probable RNA-binding pr 99.8 7.6E-20 2.6E-24 129.7 12.2 82 135-219 7-88 (91)
82 2ghp_A U4/U6 snRNA-associated 99.8 3.3E-20 1.1E-24 158.4 12.2 143 68-218 144-291 (292)
83 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.9E-20 2.7E-24 132.5 12.4 83 135-219 12-94 (103)
84 2dgv_A HnRNP M, heterogeneous 99.8 3E-20 1E-24 131.9 9.9 84 135-220 5-88 (92)
85 1wel_A RNA-binding protein 12; 99.8 1.3E-20 4.6E-25 141.4 8.3 85 135-220 22-106 (124)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.9E-20 2E-24 144.6 12.0 86 135-220 69-154 (165)
87 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-19 4.2E-24 131.5 12.7 84 135-220 12-95 (103)
88 3ex7_B RNA-binding protein 8A; 99.8 2.7E-20 9.4E-25 139.9 9.5 86 135-220 19-104 (126)
89 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-21 8.1E-26 140.2 3.5 93 126-220 5-97 (101)
90 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-20 5.3E-25 136.5 7.8 81 135-221 13-95 (105)
91 2kt5_A RNA and export factor-b 99.8 1E-19 3.6E-24 136.4 12.6 84 135-219 32-115 (124)
92 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.3E-20 2.8E-24 142.4 12.5 85 135-219 36-120 (156)
93 1x4b_A Heterogeneous nuclear r 99.8 4.1E-20 1.4E-24 137.0 9.9 82 138-220 27-108 (116)
94 2mss_A Protein (musashi1); RNA 99.8 9.8E-21 3.3E-25 129.4 5.9 75 140-215 1-75 (75)
95 2err_A Ataxin-2-binding protei 99.8 5.7E-20 2E-24 134.9 10.3 82 135-218 26-107 (109)
96 2dis_A Unnamed protein product 99.8 1.4E-20 4.9E-25 137.8 7.0 85 136-220 6-94 (109)
97 2jwn_A Embryonic polyadenylate 99.8 5.5E-20 1.9E-24 137.8 10.3 81 138-219 36-116 (124)
98 2cpi_A CCR4-NOT transcription 99.8 3.7E-20 1.3E-24 136.3 9.1 84 137-220 14-103 (111)
99 2db1_A Heterogeneous nuclear r 99.8 6.2E-20 2.1E-24 136.7 10.2 83 135-219 14-99 (118)
100 2cpy_A RNA-binding protein 12; 99.8 2.6E-20 9E-25 137.8 7.9 83 135-219 12-95 (114)
101 2ki2_A SS-DNA binding protein 99.8 6.2E-21 2.1E-25 135.0 4.1 80 139-219 2-81 (90)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-20 5.6E-25 128.8 6.1 76 139-215 1-76 (77)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-19 4.6E-24 138.3 11.8 81 135-215 60-140 (140)
104 3smz_A Protein raver-1, ribonu 99.8 1.8E-19 6.2E-24 153.2 13.7 120 81-219 54-176 (284)
105 1wez_A HnRNP H', FTP-3, hetero 99.8 7.7E-20 2.6E-24 132.7 9.6 83 135-220 12-94 (102)
106 2nlw_A Eukaryotic translation 99.8 6.9E-20 2.4E-24 133.5 9.2 83 136-220 13-102 (105)
107 1x4a_A Splicing factor, argini 99.8 2.7E-19 9.3E-24 131.1 12.3 83 135-220 19-101 (109)
108 1x5o_A RNA binding motif, sing 99.8 2.7E-19 9.2E-24 132.1 12.3 83 135-218 22-112 (114)
109 3pgw_S U1-70K; protein-RNA com 99.8 2.7E-19 9.1E-24 161.2 14.7 84 136-219 100-183 (437)
110 2hgl_A HNRPF protein, heteroge 99.8 5.6E-20 1.9E-24 140.1 8.2 83 135-219 41-126 (136)
111 1wg5_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 131.7 9.7 83 135-219 12-95 (104)
112 3r27_A HnRNP L, heterogeneous 99.8 1.6E-19 5.3E-24 130.0 9.8 79 135-219 18-98 (100)
113 2fc9_A NCL protein; structure 99.8 2.2E-19 7.4E-24 129.8 10.6 82 135-220 12-93 (101)
114 2cq1_A PTB-like protein L; RRM 99.8 4.6E-19 1.6E-23 128.3 12.1 80 135-220 12-93 (101)
115 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-19 4.6E-24 126.3 8.4 71 139-215 8-78 (89)
116 1x4d_A Matrin 3; structural ge 99.8 1.3E-19 4.4E-24 131.3 8.7 79 135-219 12-93 (102)
117 2fc8_A NCL protein; structure 99.8 5.2E-19 1.8E-23 127.9 11.8 83 135-220 12-94 (102)
118 3pgw_A U1-A; protein-RNA compl 99.8 3.9E-19 1.3E-23 151.0 13.0 76 136-216 205-281 (282)
119 2dnn_A RNA-binding protein 12; 99.8 2E-19 6.8E-24 132.0 9.4 79 137-218 15-93 (109)
120 2lmi_A GRSF-1, G-rich sequence 99.8 3.2E-20 1.1E-24 135.8 4.9 83 135-219 8-93 (107)
121 2krb_A Eukaryotic translation 99.8 5.6E-20 1.9E-24 127.6 5.6 72 139-212 2-80 (81)
122 2ad9_A Polypyrimidine tract-bi 99.8 2.2E-19 7.7E-24 133.4 9.2 81 135-221 28-110 (119)
123 2a3j_A U1 small nuclear ribonu 99.8 1E-19 3.5E-24 137.1 7.4 82 136-220 27-112 (127)
124 2xnq_A Nuclear polyadenylated 99.8 6.1E-19 2.1E-23 126.7 11.0 77 135-219 19-96 (97)
125 2jvr_A Nucleolar protein 3; RN 99.8 2.2E-19 7.5E-24 132.1 8.4 80 135-218 25-105 (111)
126 1x4c_A Splicing factor, argini 99.8 5.6E-19 1.9E-23 129.3 10.6 79 135-220 12-95 (108)
127 1fjc_A Nucleolin RBD2, protein 99.8 3.1E-19 1.1E-23 127.7 8.9 81 135-220 13-93 (96)
128 2e5j_A Methenyltetrahydrofolat 99.8 4.9E-19 1.7E-23 127.0 10.0 80 135-219 16-95 (97)
129 3lqv_A PRE-mRNA branch site pr 99.8 2.4E-19 8.1E-24 132.6 8.4 82 135-219 5-86 (115)
130 2la4_A Nuclear and cytoplasmic 99.8 2.9E-19 1E-23 129.1 8.6 77 136-218 25-101 (101)
131 2dnq_A RNA-binding protein 4B; 99.8 6.4E-19 2.2E-23 124.6 10.1 78 135-220 5-82 (90)
132 1iqt_A AUF1, heterogeneous nuc 99.8 5.4E-20 1.8E-24 125.6 4.2 75 140-215 1-75 (75)
133 2j8a_A Histone-lysine N-methyl 99.8 1.3E-19 4.5E-24 134.7 6.4 79 139-217 3-95 (136)
134 2cpj_A Non-POU domain-containi 99.8 1E-18 3.4E-23 125.8 10.4 80 135-220 12-91 (99)
135 1nu4_A U1A RNA binding domain; 99.8 3.2E-19 1.1E-23 127.7 7.5 83 135-220 5-91 (97)
136 1x4g_A Nucleolysin TIAR; struc 99.8 7E-19 2.4E-23 128.9 9.5 80 135-220 22-101 (109)
137 2jvo_A Nucleolar protein 3; nu 99.8 1E-18 3.4E-23 128.1 10.2 77 135-219 28-104 (108)
138 1wex_A Hypothetical protein (r 99.8 7.9E-19 2.7E-23 127.7 9.5 80 135-220 12-93 (104)
139 2cpx_A Hypothetical protein FL 99.8 1.7E-19 5.7E-24 133.4 6.0 86 135-220 22-107 (115)
140 2dgt_A RNA-binding protein 30; 99.8 2E-18 6.9E-23 122.5 11.4 78 135-220 7-84 (92)
141 3tyt_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 142.2 11.4 142 67-215 30-204 (205)
142 2xs2_A Deleted in azoospermia- 99.8 3.9E-19 1.3E-23 128.6 7.8 81 137-220 8-88 (102)
143 1why_A Hypothetical protein ri 99.8 8E-19 2.7E-23 125.9 9.3 79 135-219 14-94 (97)
144 2ytc_A PRE-mRNA-splicing facto 99.8 1.5E-18 5.1E-23 121.2 10.4 76 135-216 9-85 (85)
145 2lcw_A RNA-binding protein FUS 99.6 1.4E-20 4.9E-25 139.5 0.0 85 136-220 5-97 (116)
146 3sde_A Paraspeckle component 1 99.8 1.5E-18 5.1E-23 146.2 12.3 118 82-219 56-180 (261)
147 4f02_A Polyadenylate-binding p 99.8 1.4E-18 4.9E-23 142.0 11.8 83 137-219 14-96 (213)
148 1qm9_A Polypyrimidine tract-bi 99.8 1.5E-18 5E-23 139.9 11.3 130 84-218 41-197 (198)
149 3egn_A RNA-binding protein 40; 99.8 1.7E-19 5.7E-24 138.6 5.4 85 135-219 42-131 (143)
150 2hvz_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 128.4 6.4 77 139-220 1-77 (101)
151 2dha_A FLJ20171 protein; RRM d 99.8 3.7E-19 1.3E-23 133.3 6.4 82 136-219 21-106 (123)
152 2adc_A Polypyrimidine tract-bi 99.8 3.6E-18 1.2E-22 141.1 13.0 130 84-218 72-228 (229)
153 2kvi_A Nuclear polyadenylated 99.8 9.6E-19 3.3E-23 125.3 8.2 79 135-221 7-86 (96)
154 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.3E-23 128.0 8.6 80 135-220 22-104 (112)
155 2ghp_A U4/U6 snRNA-associated 99.8 1.2E-18 4E-23 148.8 9.8 131 67-220 66-199 (292)
156 1fxl_A Paraneoplastic encephal 99.8 4.2E-18 1.4E-22 132.8 12.1 82 138-219 2-83 (167)
157 1whx_A Hypothetical protein ri 99.8 8.5E-19 2.9E-23 129.1 7.5 76 137-218 9-84 (111)
158 2dnp_A RNA-binding protein 14; 99.8 2.2E-18 7.5E-23 121.8 9.4 77 135-219 6-82 (90)
159 2f3j_A RNA and export factor b 99.8 1.3E-18 4.6E-23 138.5 8.8 84 135-219 85-168 (177)
160 2hgm_A HNRPF protein, heteroge 99.8 7.3E-19 2.5E-23 132.1 6.7 81 135-218 39-121 (126)
161 1b7f_A Protein (SXL-lethal pro 99.8 3.3E-18 1.1E-22 133.8 10.5 82 138-219 3-84 (168)
162 2hgn_A Heterogeneous nuclear r 99.8 2.6E-19 8.8E-24 136.9 4.0 83 135-220 43-125 (139)
163 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-17 3.6E-22 120.4 12.0 78 135-220 12-91 (99)
164 2cqh_A IGF-II mRNA-binding pro 99.8 1.8E-18 6.3E-23 122.9 7.6 79 135-220 5-85 (93)
165 2dgu_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 123.2 9.7 78 136-221 9-86 (103)
166 1wf1_A RNA-binding protein RAL 99.8 7.1E-18 2.4E-22 123.7 10.7 75 136-218 25-100 (110)
167 1x5p_A Negative elongation fac 99.7 1.5E-17 5E-22 119.3 11.7 78 135-220 12-89 (97)
168 1wg1_A KIAA1579 protein, homol 99.7 6.5E-18 2.2E-22 119.0 9.6 75 137-218 4-78 (88)
169 2e44_A Insulin-like growth fac 99.7 3.6E-18 1.2E-22 122.0 8.4 80 136-219 13-93 (96)
170 2e5g_A U6 snRNA-specific termi 99.7 6.5E-18 2.2E-22 120.4 9.4 77 137-219 7-83 (94)
171 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-17 5.8E-22 124.8 11.3 77 138-219 28-107 (130)
172 3d2w_A TAR DNA-binding protein 99.7 9.1E-18 3.1E-22 118.6 9.2 76 135-219 8-85 (89)
173 1sjr_A Polypyrimidine tract-bi 99.7 8.1E-18 2.8E-22 131.2 9.4 79 137-219 45-125 (164)
174 1l3k_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 133.7 11.0 84 135-219 10-93 (196)
175 3beg_B Splicing factor, argini 99.7 5E-18 1.7E-22 125.7 6.6 75 137-218 15-94 (115)
176 2diu_A KIAA0430 protein; struc 99.7 1.2E-17 4.2E-22 117.5 8.0 74 137-220 8-86 (96)
177 2dnl_A Cytoplasmic polyadenyla 99.7 1.2E-17 4E-22 123.4 8.2 78 136-216 6-86 (114)
178 3tyt_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 134.1 10.2 78 137-219 3-81 (205)
179 2e5i_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 120.7 11.9 75 139-219 26-103 (124)
180 2cq2_A Hypothetical protein LO 99.7 9.4E-18 3.2E-22 123.5 6.8 77 136-218 23-106 (114)
181 2qfj_A FBP-interacting repress 99.7 2.1E-17 7.2E-22 134.5 9.3 83 138-220 28-110 (216)
182 3md3_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 127.7 9.9 80 139-219 1-80 (166)
183 2bz2_A Negative elongation fac 99.7 3.3E-17 1.1E-21 122.4 9.1 78 135-220 36-113 (121)
184 2hzc_A Splicing factor U2AF 65 99.7 2.4E-17 8.1E-22 115.5 7.5 71 137-214 5-86 (87)
185 2pe8_A Splicing factor 45; RRM 99.7 1.6E-16 5.5E-21 115.7 11.2 82 136-217 6-93 (105)
186 3nmr_A Cugbp ELAV-like family 99.7 8.3E-17 2.8E-21 126.5 10.3 83 137-219 2-89 (175)
187 1wf0_A TDP-43, TAR DNA-binding 99.7 2.4E-17 8.1E-22 116.0 6.1 77 137-220 4-80 (88)
188 3pgw_A U1-A; protein-RNA compl 99.7 8.4E-17 2.9E-21 136.5 10.6 82 135-219 6-91 (282)
189 2cjk_A Nuclear polyadenylated 99.7 4.5E-17 1.5E-21 127.3 8.0 79 138-218 3-81 (167)
190 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.1E-21 127.8 10.9 78 138-217 109-186 (193)
191 3u1l_A PRE-mRNA-splicing facto 99.6 3.1E-16 1.1E-20 129.9 8.4 79 135-219 131-230 (240)
192 2adc_A Polypyrimidine tract-bi 99.6 5.4E-16 1.9E-20 128.0 8.1 79 135-218 31-110 (229)
193 2dit_A HIV TAT specific factor 99.6 3.2E-15 1.1E-19 109.9 11.2 82 135-220 12-104 (112)
194 1fje_B Nucleolin RBD12, protei 99.6 1.8E-16 6.2E-21 124.9 4.1 83 135-219 10-92 (175)
195 1qm9_A Polypyrimidine tract-bi 99.6 6.7E-16 2.3E-20 124.2 6.7 76 138-218 3-79 (198)
196 1jmt_A Splicing factor U2AF 35 99.6 6E-16 2E-20 112.4 4.8 72 143-215 20-103 (104)
197 3v4m_A Splicing factor U2AF 65 99.6 5.2E-15 1.8E-19 107.6 8.7 81 137-217 4-96 (105)
198 3sde_A Paraspeckle component 1 99.6 6.1E-15 2.1E-19 124.1 10.0 78 135-218 19-96 (261)
199 3ue2_A Poly(U)-binding-splicin 99.6 1.4E-14 4.9E-19 107.4 10.3 79 138-216 20-107 (118)
200 2g4b_A Splicing factor U2AF 65 99.5 1.4E-14 4.9E-19 113.4 8.2 75 137-218 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 1.5E-14 5E-19 116.0 8.3 74 138-218 4-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.2E-13 1.1E-17 97.1 10.0 65 148-219 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.3E-13 4.4E-18 119.9 9.2 76 135-216 15-97 (345)
204 2dnr_A Synaptojanin-1; RRM dom 99.4 8.5E-13 2.9E-17 92.0 7.8 74 135-217 4-85 (91)
205 3s6e_A RNA-binding protein 39; 99.4 6.2E-13 2.1E-17 97.9 7.2 75 138-216 7-91 (114)
206 1owx_A Lupus LA protein, SS-B, 99.3 4.1E-12 1.4E-16 94.0 7.8 83 135-223 15-101 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.4E-11 4.8E-16 86.2 6.9 73 135-216 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.8E-10 6E-15 94.3 8.0 67 150-216 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 1.5E-07 5E-12 67.3 8.6 74 136-215 19-97 (117)
210 4f25_A Polyadenylate-binding p 98.0 1.1E-06 3.9E-11 64.0 0.3 81 67-154 30-113 (115)
211 1wey_A Calcipressin 1; structu 97.8 5.9E-05 2E-09 53.5 7.3 73 139-217 6-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.7 0.00026 8.9E-09 49.4 8.8 57 136-201 14-70 (100)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00036 1.2E-08 48.5 8.2 67 140-206 3-71 (91)
214 2dhx_A Poly (ADP-ribose) polym 97.5 0.0006 2.1E-08 48.1 8.8 71 138-217 8-83 (104)
215 3ctr_A Poly(A)-specific ribonu 97.5 0.00019 6.5E-09 50.3 5.7 53 140-201 8-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 97.2 0.0019 6.5E-08 47.0 8.5 71 137-215 23-94 (119)
217 2hvz_A Splicing factor, argini 97.0 0.00072 2.5E-08 47.4 4.2 63 83-148 36-101 (101)
218 2kn4_A Immunoglobulin G-bindin 96.6 0.0017 5.8E-08 49.4 4.2 35 167-203 2-36 (158)
219 2l08_A Regulator of nonsense t 96.5 0.0031 1.1E-07 44.1 4.6 67 140-206 11-79 (97)
220 3p3d_A Nucleoporin 53; structu 96.2 0.0051 1.7E-07 45.4 4.6 76 139-216 8-97 (132)
221 2lxi_A RNA-binding protein 10; 96.2 0.0043 1.5E-07 42.7 3.8 57 68-124 28-88 (91)
222 2i2y_A Fusion protein consists 96.1 0.003 1E-07 47.6 3.0 42 176-218 9-51 (150)
223 3lqv_A PRE-mRNA branch site pr 96.1 0.0012 4.1E-08 47.4 0.7 74 67-164 33-109 (115)
224 3pq1_A Poly(A) RNA polymerase; 96.1 0.0025 8.5E-08 57.2 2.7 53 140-198 55-107 (464)
225 2fy1_A RNA-binding motif prote 94.0 0.054 1.8E-06 38.8 4.0 54 67-121 32-88 (116)
226 1x5t_A Splicing factor 3B subu 94.0 0.073 2.5E-06 36.3 4.6 56 67-122 30-89 (96)
227 2rs2_A Musashi-1, RNA-binding 93.9 0.033 1.1E-06 39.4 2.8 55 66-120 49-105 (109)
228 3p5t_L Cleavage and polyadenyl 93.9 0.027 9.2E-07 38.3 2.2 52 68-119 29-83 (90)
229 1x4h_A RNA-binding protein 28; 93.8 0.039 1.3E-06 38.9 2.9 56 67-122 40-104 (111)
230 2cqb_A Peptidyl-prolyl CIS-tra 93.7 0.061 2.1E-06 37.2 3.9 56 66-121 36-94 (102)
231 2dgs_A DAZ-associated protein 93.6 0.047 1.6E-06 37.6 3.0 55 67-121 35-91 (99)
232 1x4b_A Heterogeneous nuclear r 93.4 0.068 2.3E-06 38.0 3.7 57 66-122 51-109 (116)
233 3ns6_A Eukaryotic translation 93.4 0.024 8.2E-07 39.5 1.2 54 66-119 36-93 (100)
234 4fxv_A ELAV-like protein 1; RN 93.4 0.019 6.6E-07 40.0 0.7 52 66-117 43-97 (99)
235 1whw_A Hypothetical protein ri 93.2 0.049 1.7E-06 37.5 2.7 55 67-121 33-90 (99)
236 3s8s_A Histone-lysine N-methyl 93.1 0.023 7.8E-07 40.6 0.7 53 65-117 29-84 (110)
237 2lkz_A RNA-binding protein 5; 93.0 0.029 9.8E-07 39.0 1.1 48 69-116 38-92 (95)
238 2dnz_A Probable RNA-binding pr 92.9 0.062 2.1E-06 36.6 2.8 58 66-123 29-89 (95)
239 2mss_A Protein (musashi1); RNA 92.9 0.062 2.1E-06 34.9 2.6 47 67-113 24-72 (75)
240 2x1f_A MRNA 3'-END-processing 92.3 0.067 2.3E-06 36.6 2.3 54 67-120 27-83 (96)
241 2cph_A RNA binding motif prote 92.3 0.12 4E-06 36.0 3.6 55 67-121 40-99 (107)
242 1x5s_A Cold-inducible RNA-bind 92.1 0.095 3.2E-06 36.2 2.9 54 67-120 37-93 (102)
243 1iqt_A AUF1, heterogeneous nuc 92.1 0.077 2.6E-06 34.4 2.3 47 67-113 24-72 (75)
244 2cpz_A CUG triplet repeat RNA- 92.1 0.05 1.7E-06 38.7 1.4 55 67-121 50-107 (115)
245 1x5u_A Splicing factor 3B subu 92.1 0.13 4.4E-06 35.7 3.6 55 67-121 40-97 (105)
246 3md1_A Nuclear and cytoplasmic 92.1 0.041 1.4E-06 36.5 0.9 54 66-119 25-81 (83)
247 1u6f_A Tcubp1, RNA-binding pro 92.0 0.4 1.4E-05 35.0 6.4 55 67-121 67-124 (139)
248 2dhg_A TRNA selenocysteine ass 92.0 0.086 3E-06 36.6 2.5 56 67-123 35-94 (104)
249 2do4_A Squamous cell carcinoma 91.9 0.041 1.4E-06 38.0 0.7 53 67-120 42-97 (100)
250 1s79_A Lupus LA protein; RRM, 91.8 0.09 3.1E-06 36.9 2.5 49 66-115 35-85 (103)
251 2cq0_A Eukaryotic translation 91.8 0.076 2.6E-06 36.8 2.0 56 66-121 39-97 (103)
252 2dgo_A Cytotoxic granule-assoc 91.8 0.11 3.6E-06 36.9 2.8 56 67-122 40-98 (115)
253 3d45_A Poly(A)-specific ribonu 91.7 0.46 1.6E-05 43.1 7.6 56 138-202 440-495 (507)
254 2cpe_A RNA-binding protein EWS 91.6 0.15 5.2E-06 35.9 3.6 52 71-122 52-106 (113)
255 2kxn_B Transformer-2 protein h 91.2 0.12 4.1E-06 37.8 2.7 54 66-119 70-126 (129)
256 3mdf_A Peptidyl-prolyl CIS-tra 91.2 0.072 2.5E-06 35.4 1.3 48 67-114 32-82 (85)
257 2dnm_A SRP46 splicing factor; 91.1 0.09 3.1E-06 36.4 1.9 55 66-120 37-94 (103)
258 2m2b_A RNA-binding protein 10; 91.1 0.22 7.6E-06 36.2 4.1 54 67-121 48-110 (131)
259 2cqg_A TDP-43, TAR DNA-binding 91.0 0.06 2E-06 37.4 0.9 55 67-121 40-95 (103)
260 1uaw_A Mouse-musashi-1; RNP-ty 91.0 0.11 3.9E-06 33.6 2.2 47 67-113 25-73 (77)
261 2jrs_A RNA-binding protein 39; 91.0 0.073 2.5E-06 37.6 1.3 53 67-119 51-106 (108)
262 2j76_E EIF-4B, EIF4B, eukaryot 90.9 0.15 5.2E-06 35.2 2.9 51 67-118 44-97 (100)
263 3ex7_B RNA-binding protein 8A; 90.9 0.14 4.8E-06 36.8 2.8 55 67-121 47-104 (126)
264 3s7r_A Heterogeneous nuclear r 90.8 0.047 1.6E-06 36.6 0.1 48 66-113 35-84 (87)
265 2lea_A Serine/arginine-rich sp 90.5 0.19 6.4E-06 37.0 3.3 53 67-119 72-127 (135)
266 1wi8_A EIF-4B, eukaryotic tran 90.5 0.15 5.2E-06 35.3 2.6 54 67-121 40-96 (104)
267 2cqd_A RNA-binding region cont 90.5 0.32 1.1E-05 34.3 4.4 53 67-119 42-96 (116)
268 1oo0_B CG8781-PA, drosophila Y 90.2 0.12 4.1E-06 36.3 1.9 53 67-119 51-106 (110)
269 2dh8_A DAZ-associated protein 90.1 0.061 2.1E-06 37.5 0.2 55 67-121 41-97 (105)
270 3n9u_C Cleavage and polyadenyl 89.9 0.062 2.1E-06 40.8 0.1 50 68-117 83-135 (156)
271 2cpy_A RNA-binding protein 12; 89.8 0.14 4.9E-06 36.3 2.0 50 67-117 40-92 (114)
272 2dgp_A Bruno-like 4, RNA bindi 89.7 0.24 8.4E-06 34.3 3.2 54 67-120 38-97 (106)
273 2e5h_A Zinc finger CCHC-type a 89.7 0.12 4.1E-06 35.0 1.5 49 66-114 40-91 (94)
274 2lmi_A GRSF-1, G-rich sequence 89.5 0.2 6.7E-06 35.1 2.5 47 69-116 41-89 (107)
275 2cqp_A RNA-binding protein 12; 89.5 0.14 4.8E-06 35.0 1.7 51 67-117 40-93 (98)
276 3bs9_A Nucleolysin TIA-1 isofo 89.3 0.079 2.7E-06 35.4 0.2 51 67-117 31-84 (87)
277 1p1t_A Cleavage stimulation fa 89.2 0.14 4.8E-06 35.4 1.6 52 67-118 33-87 (104)
278 2la6_A RNA-binding protein FUS 89.2 0.14 4.7E-06 35.2 1.5 43 72-114 51-96 (99)
279 2ad9_A Polypyrimidine tract-bi 89.2 0.31 1.1E-05 35.2 3.4 51 65-121 54-109 (119)
280 1p27_B RNA-binding protein 8A; 89.1 0.1 3.4E-06 36.4 0.7 52 67-118 48-102 (106)
281 2cq3_A RNA-binding protein 9; 88.9 0.3 1E-05 33.7 3.1 53 67-121 40-95 (103)
282 2g0c_A ATP-dependent RNA helic 88.8 0.75 2.6E-05 30.0 4.9 68 140-216 2-75 (76)
283 1wg5_A Heterogeneous nuclear r 88.7 0.2 6.9E-06 34.8 2.1 50 67-117 40-92 (104)
284 2jwn_A Embryonic polyadenylate 88.6 0.18 6.3E-06 36.1 1.9 52 67-118 61-114 (124)
285 2dgw_A Probable RNA-binding pr 88.4 0.15 5.2E-06 34.3 1.2 41 79-119 45-87 (91)
286 1x4e_A RNA binding motif, sing 88.4 0.23 7.8E-06 32.9 2.1 48 66-113 29-79 (85)
287 4a8x_A RNA-binding protein wit 88.3 0.19 6.5E-06 33.4 1.7 51 67-117 29-83 (88)
288 2dis_A Unnamed protein product 88.3 0.36 1.2E-05 33.6 3.2 53 69-121 36-94 (109)
289 2d9p_A Polyadenylate-binding p 88.2 0.3 1E-05 33.7 2.7 54 66-121 39-95 (103)
290 1wel_A RNA-binding protein 12; 87.9 0.13 4.4E-06 37.1 0.7 49 66-114 49-99 (124)
291 2cq1_A PTB-like protein L; RRM 87.9 0.28 9.7E-06 34.2 2.4 50 65-120 38-92 (101)
292 2fc8_A NCL protein; structure 87.9 0.19 6.4E-06 34.6 1.4 47 77-123 47-96 (102)
293 1wez_A HnRNP H', FTP-3, hetero 87.5 0.24 8.1E-06 34.5 1.8 48 71-119 43-92 (102)
294 2cpf_A RNA binding motif prote 87.3 0.17 5.9E-06 34.6 1.0 55 67-121 30-90 (98)
295 2dnn_A RNA-binding protein 12; 87.3 0.24 8E-06 35.1 1.7 45 71-116 44-90 (109)
296 2dng_A Eukaryotic translation 87.2 0.14 4.7E-06 35.5 0.4 53 69-121 41-95 (103)
297 1x4f_A Matrin 3; structural ge 87.2 0.5 1.7E-05 33.7 3.4 50 64-119 48-102 (112)
298 2ek1_A RNA-binding protein 12; 87.2 0.22 7.6E-06 33.7 1.5 49 67-115 40-91 (95)
299 2div_A TRNA selenocysteine ass 87.2 0.23 8E-06 33.9 1.6 50 67-116 34-91 (99)
300 1fj7_A Nucleolin RBD1, protein 87.1 0.35 1.2E-05 33.2 2.5 43 77-119 51-95 (101)
301 3ucg_A Polyadenylate-binding p 87.0 0.16 5.5E-06 33.9 0.7 51 67-117 31-83 (89)
302 2khc_A Testis-specific RNP-typ 87.0 0.16 5.5E-06 36.1 0.7 48 67-114 65-115 (118)
303 2err_A Ataxin-2-binding protei 86.9 0.31 1.1E-05 34.2 2.2 50 67-118 54-106 (109)
304 2dgx_A KIAA0430 protein; RRM d 86.8 0.28 9.5E-06 33.5 1.8 50 67-119 38-90 (96)
305 2cpx_A Hypothetical protein FL 86.7 0.31 1.1E-05 34.3 2.1 42 80-121 63-107 (115)
306 2ki2_A SS-DNA binding protein 86.7 0.22 7.6E-06 33.4 1.2 52 67-119 26-80 (90)
307 2dnh_A Bruno-like 5, RNA bindi 86.6 0.27 9.2E-06 34.0 1.7 53 67-120 40-98 (105)
308 2ku7_A MLL1 PHD3-CYP33 RRM chi 86.6 0.21 7.1E-06 36.5 1.1 47 67-113 88-137 (140)
309 2dha_A FLJ20171 protein; RRM d 86.5 0.19 6.6E-06 36.5 0.9 43 70-113 55-99 (123)
310 1sjq_A Polypyrimidine tract-bi 86.4 0.48 1.7E-05 33.4 2.9 38 84-121 52-94 (105)
311 2wbr_A GW182, gawky, LD47780P; 85.9 0.42 1.4E-05 32.7 2.2 30 82-111 41-73 (89)
312 2cpi_A CCR4-NOT transcription 85.6 0.31 1.1E-05 34.3 1.6 57 64-120 40-102 (111)
313 2lcw_A RNA-binding protein FUS 85.8 0.16 5.4E-06 36.1 0.0 51 72-122 45-98 (116)
314 1wex_A Hypothetical protein (r 85.5 0.87 3E-05 31.8 3.9 38 83-120 50-92 (104)
315 2cq4_A RNA binding motif prote 85.5 0.12 4E-06 36.6 -0.8 53 67-119 50-104 (114)
316 2krb_A Eukaryotic translation 85.3 0.48 1.6E-05 31.0 2.4 41 67-109 32-75 (81)
317 2hgl_A HNRPF protein, heteroge 85.3 0.23 7.7E-06 36.8 0.7 44 69-113 74-119 (136)
318 2kt5_A RNA and export factor-b 85.2 0.37 1.3E-05 34.5 1.9 51 67-118 60-113 (124)
319 2cqc_A Arginine/serine-rich sp 85.1 0.19 6.6E-06 34.0 0.3 49 67-115 40-91 (95)
320 2hgn_A Heterogeneous nuclear r 85.1 0.42 1.4E-05 35.5 2.1 48 71-119 74-123 (139)
321 3q2s_C Cleavage and polyadenyl 84.9 0.15 5.1E-06 41.2 -0.5 50 68-117 96-148 (229)
322 2la4_A Nuclear and cytoplasmic 84.9 0.49 1.7E-05 32.4 2.4 36 82-117 61-99 (101)
323 2cqi_A Nucleolysin TIAR; RNA r 84.9 0.41 1.4E-05 33.0 1.9 52 67-120 40-94 (103)
324 1x4a_A Splicing factor, argini 84.8 0.53 1.8E-05 32.8 2.5 39 83-121 60-101 (109)
325 3pgw_S U1-70K; protein-RNA com 84.8 0.38 1.3E-05 42.8 2.1 54 67-120 127-183 (437)
326 2a3j_A U1 small nuclear ribonu 84.6 0.52 1.8E-05 34.3 2.5 39 81-119 69-110 (127)
327 2e5j_A Methenyltetrahydrofolat 84.6 0.57 1.9E-05 31.9 2.5 38 82-119 54-94 (97)
328 2hgm_A HNRPF protein, heteroge 84.5 0.23 8E-06 36.2 0.5 45 72-117 73-119 (126)
329 2cqh_A IGF-II mRNA-binding pro 84.5 0.9 3.1E-05 30.5 3.5 41 82-122 42-86 (93)
330 1h2v_Z 20 kDa nuclear CAP bind 84.3 0.26 9E-06 36.9 0.7 53 67-119 64-119 (156)
331 2db1_A Heterogeneous nuclear r 83.9 0.24 8.2E-06 35.4 0.3 46 69-115 47-94 (118)
332 1x5p_A Negative elongation fac 83.4 0.56 1.9E-05 31.9 2.1 39 82-120 47-88 (97)
333 2dnl_A Cytoplasmic polyadenyla 83.4 1.8 6.3E-05 30.3 4.9 33 81-113 49-82 (114)
334 2do0_A HnRNP M, heterogeneous 83.3 0.81 2.8E-05 32.0 3.0 52 67-119 40-94 (114)
335 2fc9_A NCL protein; structure 83.1 0.7 2.4E-05 31.6 2.5 43 79-121 48-93 (101)
336 2dgv_A HnRNP M, heterogeneous 83.0 0.51 1.7E-05 31.6 1.7 51 67-119 33-86 (92)
337 3d2w_A TAR DNA-binding protein 82.9 0.48 1.6E-05 31.9 1.6 36 83-119 47-84 (89)
338 2pe8_A Splicing factor 45; RRM 82.5 0.29 9.8E-06 34.4 0.3 51 66-116 37-91 (105)
339 2d9o_A DNAJ (HSP40) homolog, s 82.3 0.93 3.2E-05 31.5 2.9 47 67-118 42-89 (100)
340 3ulh_A THO complex subunit 4; 82.2 0.35 1.2E-05 33.5 0.6 48 67-115 54-104 (107)
341 2bz2_A Negative elongation fac 82.0 0.82 2.8E-05 32.8 2.6 38 82-119 71-111 (121)
342 1jmt_A Splicing factor U2AF 35 81.9 0.4 1.4E-05 33.5 0.9 46 67-113 52-100 (104)
343 1why_A Hypothetical protein ri 81.8 0.92 3.1E-05 30.7 2.7 37 84-120 53-94 (97)
344 1x4g_A Nucleolysin TIAR; struc 81.5 0.98 3.4E-05 31.4 2.8 38 84-121 61-101 (109)
345 2dgu_A Heterogeneous nuclear r 80.6 1.8 6.3E-05 29.6 4.0 40 84-123 45-87 (103)
346 1fjc_A Nucleolin RBD2, protein 80.5 0.52 1.8E-05 31.9 1.0 40 80-119 49-91 (96)
347 2dnq_A RNA-binding protein 4B; 80.4 1.2 4E-05 29.7 2.8 38 84-121 42-82 (90)
348 2f3j_A RNA and export factor b 80.0 1.1 3.6E-05 34.6 2.8 50 67-117 113-165 (177)
349 1rk8_A CG8781-PA, CG8781-PA pr 79.9 0.39 1.3E-05 36.4 0.2 54 67-120 97-153 (165)
350 3v4m_A Splicing factor U2AF 65 79.5 0.86 3E-05 31.8 1.9 50 66-115 39-93 (105)
351 2ywk_A Putative RNA-binding pr 79.4 0.37 1.3E-05 32.6 -0.1 48 67-115 41-91 (95)
352 2nlw_A Eukaryotic translation 79.2 0.54 1.8E-05 32.6 0.8 48 67-116 46-97 (105)
353 3r27_A HnRNP L, heterogeneous 78.8 0.67 2.3E-05 32.3 1.2 36 83-118 56-96 (100)
354 2jvr_A Nucleolar protein 3; RN 78.8 0.89 3E-05 32.2 1.8 36 82-117 65-103 (111)
355 2cpj_A Non-POU domain-containi 78.3 0.96 3.3E-05 30.8 1.9 37 83-119 50-89 (99)
356 2xs2_A Deleted in azoospermia- 78.1 0.14 4.9E-06 35.3 -2.6 52 67-119 34-86 (102)
357 1x4d_A Matrin 3; structural ge 77.8 0.71 2.4E-05 32.2 1.0 49 65-119 39-92 (102)
358 2dgt_A RNA-binding protein 30; 77.6 1.4 4.7E-05 29.5 2.4 38 84-121 44-84 (92)
359 2xnq_A Nuclear polyadenylated 77.5 1.1 3.7E-05 30.6 2.0 35 83-117 56-93 (97)
360 1wf1_A RNA-binding protein RAL 77.5 1.3 4.3E-05 30.8 2.3 36 83-118 61-99 (110)
361 2cpd_A Apobec-1 stimulating pr 77.4 1.4 4.9E-05 29.9 2.5 38 83-120 50-90 (99)
362 2diu_A KIAA0430 protein; struc 76.8 1.4 4.9E-05 30.4 2.3 37 84-120 46-85 (96)
363 1wf0_A TDP-43, TAR DNA-binding 76.7 1.2 3.9E-05 29.6 1.8 38 83-120 41-79 (88)
364 1x4c_A Splicing factor, argini 76.6 1.4 4.9E-05 30.5 2.4 38 85-122 51-96 (108)
365 2jvo_A Nucleolar protein 3; nu 76.4 1.3 4.4E-05 30.9 2.1 36 84-119 65-103 (108)
366 1nu4_A U1A RNA binding domain; 76.0 1.1 3.7E-05 30.3 1.6 39 80-118 47-88 (97)
367 2j8a_A Histone-lysine N-methyl 75.8 0.44 1.5E-05 35.1 -0.5 48 66-113 30-90 (136)
368 3s6e_A RNA-binding protein 39; 75.7 1.2 4.2E-05 31.6 1.9 46 66-115 41-89 (114)
369 2dit_A HIV TAT specific factor 75.3 1.5 5.1E-05 30.7 2.2 50 66-119 50-102 (112)
370 2kvi_A Nuclear polyadenylated 75.1 1.8 6E-05 29.3 2.5 38 83-120 44-84 (96)
371 1x5o_A RNA binding motif, sing 74.2 1.2 4.2E-05 31.0 1.5 36 66-102 49-84 (114)
372 3ue2_A Poly(U)-binding-splicin 74.0 0.57 1.9E-05 33.7 -0.3 51 65-115 48-105 (118)
373 2dnp_A RNA-binding protein 14; 72.6 2.6 9E-05 27.9 2.9 37 84-120 43-82 (90)
374 3egn_A RNA-binding protein 40; 72.6 1.2 4.3E-05 32.5 1.3 41 79-119 87-130 (143)
375 1wg1_A KIAA1579 protein, homol 72.6 1.7 5.8E-05 28.8 1.9 35 82-116 38-75 (88)
376 2ytc_A PRE-mRNA-splicing facto 71.4 1.6 5.3E-05 28.6 1.4 31 83-113 47-81 (85)
377 2hzc_A Splicing factor U2AF 65 69.9 1.9 6.4E-05 28.3 1.6 32 82-113 51-84 (87)
378 2voo_A Lupus LA protein; RNA-b 69.3 1.3 4.4E-05 34.6 0.7 48 66-114 133-182 (193)
379 2e5g_A U6 snRNA-specific termi 68.9 4.2 0.00014 27.1 3.3 35 86-120 47-83 (94)
380 3beg_B Splicing factor, argini 68.5 3.7 0.00013 28.8 3.0 27 85-111 52-81 (115)
381 2dhx_A Poly (ADP-ribose) polym 64.3 4.6 0.00016 28.2 2.7 50 85-151 48-99 (104)
382 1whx_A Hypothetical protein ri 64.0 3.4 0.00012 28.8 2.1 35 83-117 45-82 (111)
383 2cq2_A Hypothetical protein LO 60.0 4.8 0.00017 28.6 2.2 21 83-103 62-82 (114)
384 2e44_A Insulin-like growth fac 51.0 9.2 0.00032 25.3 2.4 33 87-119 57-92 (96)
385 1sjr_A Polypyrimidine tract-bi 50.2 9.7 0.00033 28.9 2.6 38 83-120 83-125 (164)
386 2dnr_A Synaptojanin-1; RRM dom 46.8 8 0.00027 26.3 1.5 34 84-117 49-84 (91)
387 3u1l_A PRE-mRNA-splicing facto 44.1 9.2 0.00031 30.9 1.7 24 83-106 178-204 (240)
388 4e8u_A Putative uncharacterize 42.3 58 0.002 24.8 5.8 55 140-197 14-80 (172)
389 3ts2_A Protein LIN-28 homolog 41.3 4.6 0.00016 30.1 -0.5 28 153-188 2-29 (148)
390 2e5i_A Heterogeneous nuclear r 40.0 22 0.00075 25.4 3.1 48 67-120 50-103 (124)
391 3tht_A Alkylated DNA repair pr 39.1 15 0.00053 31.3 2.4 21 83-103 55-75 (345)
392 3dxb_A Thioredoxin N-terminall 38.6 8.5 0.00029 30.1 0.7 49 67-115 154-209 (222)
393 3zzy_A Polypyrimidine tract-bi 38.1 17 0.0006 26.3 2.3 48 67-119 53-106 (130)
394 1xn9_A 30S ribosomal protein S 36.7 84 0.0029 21.6 5.5 48 148-196 28-80 (101)
395 1ywx_A 30S ribosomal protein S 32.6 1.1E+02 0.0036 21.1 5.5 47 148-195 28-79 (102)
396 2v94_A RPS24, 30S ribosomal pr 31.5 1.1E+02 0.0038 21.3 5.4 46 149-195 38-88 (107)
397 3mfb_A Uncharacterized protein 31.4 69 0.0024 24.0 4.6 37 150-186 3-42 (157)
398 3fut_A Dimethyladenosine trans 25.2 57 0.0019 26.6 3.5 33 139-172 111-143 (271)
399 3uzu_A Ribosomal RNA small sub 24.6 30 0.001 28.4 1.7 33 140-172 116-148 (279)
400 2i9x_A Putative septation prot 23.3 1.2E+02 0.004 20.2 4.2 26 164-189 5-30 (87)
401 2lfv_A Protein DAMX; cell divi 28.6 18 0.00061 25.3 0.0 65 135-204 22-88 (106)
402 2w7a_A LINE-1 ORF1P; RNA-bindi 21.4 2E+02 0.0069 19.6 5.5 75 139-213 4-98 (100)
403 3lpe_A Putative transcription 21.3 65 0.0022 21.5 2.6 25 179-203 49-73 (92)
404 2ia9_A Putative septation prot 21.0 1.4E+02 0.0046 20.5 4.2 26 164-189 5-30 (100)
405 2i9z_A Putative septation prot 20.3 1.4E+02 0.005 20.6 4.3 26 164-189 5-30 (105)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=5.9e-24 Score=153.72 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..++++|||+|||+++++++|+++|+.||.|.+|+|++|+.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 025814 215 SKW 217 (247)
Q Consensus 215 a~~ 217 (247)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=4.8e-23 Score=160.98 Aligned_cols=137 Identities=13% Similarity=0.235 Sum_probs=103.6
Q ss_pred cCCCceeeCccCHHHHHHHHhcCc----cchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHH
Q 025814 82 FQRDAQTITPEALESVKAALASSD----IEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSK 157 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~ 157 (247)
..+|++||.|.+.+.+.+++.... +++... ..........................++|||+|||+++++++|++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT-YDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE-EETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCccc-ccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 478999999999999999985421 111111 000000000000011111112234567999999999999999999
Q ss_pred HhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 158 AFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 158 ~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+|+.||.|.+|+|++|+.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|.+++.+.
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999899999999999999999999999999999999999999998654
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=149.30 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+.++|||+||++++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 216 KWQE 219 (247)
Q Consensus 216 ~~k~ 219 (247)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=1.8e-23 Score=163.99 Aligned_cols=139 Identities=19% Similarity=0.348 Sum_probs=119.7
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
+|.+..+....+..+..++|++||.|.+.++|.+|+.. ..++++.+.+.....+.. ....++|||+
T Consensus 27 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~-------------~~~~~~l~V~ 93 (167)
T 2cjk_A 27 YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE-------------QDKTGKIFVG 93 (167)
T ss_dssp TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------HHHCEEEEEE
T ss_pred CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------ccCCCeEEEC
Confidence 36777776677767788999999999999999999985 357777777665544322 1234589999
Q ss_pred CCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 145 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 145 nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++ +||..++|+.|+|.++.++
T Consensus 94 nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 94 GIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999999999999999999999998899999999999999999999996 8999999999999999876
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.89 E-value=2.8e-23 Score=170.15 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=114.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.|..+....+..+..+++++||+|++.+++..|+.. ..+.++.+.+.......... .....+|||
T Consensus 40 G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~-----------~~~~~~l~v 108 (213)
T 4f02_A 40 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR-----------KSGVGNIFI 108 (213)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH-----------HHCTTEEEE
T ss_pred CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc-----------ccccccceE
Confidence 6777776767777788899999999999999998853 45666666554433221110 123458999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+||++++++++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|++||+.|||..|+|+.|+|.+++.+.
T Consensus 109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999999999984 5689999999999999999999999999999999999998754
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-22 Score=157.25 Aligned_cols=138 Identities=25% Similarity=0.468 Sum_probs=114.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+.. ..+++++||+|.+.+++.+|+. +..+.++.+.+........ ......++|||
T Consensus 25 G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~-----------~~~~~~~~l~v 92 (166)
T 3md3_A 25 GPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ-----------SSSDDTFNLFV 92 (166)
T ss_dssp SCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC-----------CCCTTCEEEEE
T ss_pred CCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC-----------CCCCCCceEEE
Confidence 5555554444432 4478999999999999999884 4567777777765543322 11445679999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
+|||..+++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 93 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 93 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=1.9e-22 Score=162.07 Aligned_cols=147 Identities=14% Similarity=0.312 Sum_probs=116.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
|.+..+....+.....++|++||.|.+.++|.+|++. ..+.++.+.+.....+...... ......++|||+
T Consensus 38 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~-------~~~~~~~~l~V~ 110 (196)
T 1l3k_A 38 GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------GAHLTVKKIFVG 110 (196)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC------------------CCSEEEEE
T ss_pred CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccccc-------ccCCCcceEEEe
Confidence 6666666666666777899999999999999999976 3577777777665544322111 112345699999
Q ss_pred CCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccccc
Q 025814 145 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERT 221 (247)
Q Consensus 145 nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~~ 221 (247)
|||+++++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|+++.++...
T Consensus 111 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999999999999999999999999998999999999999999999999965 899999999999999877643
No 8
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=157.14 Aligned_cols=94 Identities=19% Similarity=0.342 Sum_probs=84.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..++|||+||++++++++|+++|+.|| .|.+|+|++|+.+|.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 456999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHhhh
Q 025814 215 SKWQERTDFEALERSK 230 (247)
Q Consensus 215 a~~k~~~~~~~~~~~~ 230 (247)
+..+.....+...+++
T Consensus 134 a~~~~~~~~e~~~rkr 149 (156)
T 3n9u_C 134 ATRQNLSQFEAQARKR 149 (156)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCCCcchhhhhhcccc
Confidence 9877665555444443
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=8.7e-22 Score=137.16 Aligned_cols=81 Identities=37% Similarity=0.735 Sum_probs=78.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 025814 219 E 219 (247)
Q Consensus 219 ~ 219 (247)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.87 E-value=8.1e-22 Score=154.51 Aligned_cols=136 Identities=17% Similarity=0.315 Sum_probs=116.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+.....+++++||.|.+.++|..|+. +..+.++.+.+........ ....++|||
T Consensus 28 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-------------~~~~~~l~v 94 (168)
T 1b7f_A 28 GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-------------SIKDTNLYV 94 (168)
T ss_dssp SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-------------TTTTCEEEE
T ss_pred CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-------------cCCCCCEEE
Confidence 666666666666677889999999999999999885 4567777777765543321 234569999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRKS 215 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a 215 (247)
+|||..+++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++| +.|+|++|
T Consensus 95 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 95 TNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999999999998899999999999999999999999999999988 99999875
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=5.3e-23 Score=146.39 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=76.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC-CceeCCEeEEEEEcc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN-GKYVGNRPIKLRKSK 216 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~-g~~i~g~~l~V~~a~ 216 (247)
++|||+|||+++++++|+++|+.|| .|.+|+|++|+.||.++|||||+|.+.++|++||+.|+ +..++|+.|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4899999999999999999999999 89999999999999999999999999999999998874 568999999999998
Q ss_pred ccccc
Q 025814 217 WQERT 221 (247)
Q Consensus 217 ~k~~~ 221 (247)
++.+.
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=9.3e-23 Score=166.36 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=118.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+......++++||.|.+.++|.+|+. +..+.++.+.+.............. .........++|||
T Consensus 53 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~--~~~~~~~~~~~l~v 130 (216)
T 2qfj_A 53 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIID--QLAEEARAFNRIYV 130 (216)
T ss_dssp SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHH--HHHHHHTTSCEEEE
T ss_pred CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhh--hhhcccCCCcEEEE
Confidence 666666666665667789999999999999999986 4567787777755433221100000 00001234569999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+||+.++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++..+.
T Consensus 131 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 131 ASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp ECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred eCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998654
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=1.4e-21 Score=157.35 Aligned_cols=141 Identities=18% Similarity=0.324 Sum_probs=113.8
Q ss_pred hhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCC-------CCCCCCCCCcEEEEcCCCCCC
Q 025814 80 QLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDP-------TLAEWPENDYRLFCGDLGNEV 150 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~-------~~~~~~~~~~~lfV~nLp~~~ 150 (247)
...+++++||+|.+.++|.+|+.. ..+.++.+.+................ .........++|||+|||+++
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 126 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYL 126 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTC
T ss_pred ecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCC
Confidence 455699999999999999999842 35677777776654432211110000 111123566899999999999
Q ss_pred cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccccc
Q 025814 151 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220 (247)
Q Consensus 151 ~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~ 220 (247)
++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|++++++.+
T Consensus 127 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 127 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999988999999999999999999999999999999999999999987654
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=138.18 Aligned_cols=83 Identities=36% Similarity=0.690 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34669999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 025814 216 KWQ 218 (247)
Q Consensus 216 ~~k 218 (247)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.87 E-value=1.2e-21 Score=154.15 Aligned_cols=123 Identities=19% Similarity=0.337 Sum_probs=105.7
Q ss_pred hhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHH
Q 025814 80 QLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSK 157 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~ 157 (247)
...+++++||+|.+.++|.+|+.. ..+.++.+.+........ ....++|||+|||.++++++|++
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~-------------~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP-------------LPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC-------------CTTTTCEEEECCCTTCCHHHHHH
T ss_pred ecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC-------------CCCCCEEEEEcCCCcCCHHHHHH
Confidence 345699999999999999999842 356677666654322211 23356899999999999999999
Q ss_pred HhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 158 AFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 158 ~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 114 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999889999999999999999999999999999999999999987
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=144.11 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCC--eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCEeEEE
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPS--FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK----YVGNRPIKL 212 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~--i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~----~i~g~~l~V 212 (247)
.+|||+||++++|+++|+++|++||. |.+|++++|+.||.++|||||+|.+.++|++|++.|||. .|+||.|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 38999999999999999999999995 679999999999999999999999999999999999997 599999999
Q ss_pred EEccc
Q 025814 213 RKSKW 217 (247)
Q Consensus 213 ~~a~~ 217 (247)
++|+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 17
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.2e-21 Score=145.23 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
..+|||+|||+++++++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|++||+.|||..|+|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4489999999999999999999999999999999995 55899999999999999999999999999999999999986
Q ss_pred ccc
Q 025814 218 QER 220 (247)
Q Consensus 218 k~~ 220 (247)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 18
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=140.16 Aligned_cols=82 Identities=26% Similarity=0.448 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
....++|||+||++++++++|+++|+.||.|.+ +++++++.+|.++|||||+|.+.++|++|++.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 566789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CEeEEEEEcc
Q 025814 207 NRPIKLRKSK 216 (247)
Q Consensus 207 g~~l~V~~a~ 216 (247)
|+.|+|++++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 19
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=1.1e-21 Score=153.21 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+.....+++++||+|.+.++|..|+. +..+.++.+.+........ ....++|||
T Consensus 27 G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-------------~~~~~~l~v 93 (167)
T 1fxl_A 27 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-------------SIRDANLYV 93 (167)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-------------GGTTCEEEE
T ss_pred CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-------------cCCCCcEEE
Confidence 666666666666667788999999999999999875 4567787777765543321 233458999
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe--EEEEEc
Q 025814 144 GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP--IKLRKS 215 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~--l~V~~a 215 (247)
+|||.++++++|+++|+.||.|.+++++++..+|.++|||||+|.+.++|.+|++.|||..++|+. |+|++|
T Consensus 94 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 94 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999999999889999999999999999999999999999999975 888765
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2e-21 Score=135.96 Aligned_cols=82 Identities=32% Similarity=0.492 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 21
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=141.41 Aligned_cols=92 Identities=28% Similarity=0.532 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
...........++|||+|||.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|||..|+|
T Consensus 16 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 16 ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp CCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33334446677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEEEEccccc
Q 025814 208 RPIKLRKSKWQE 219 (247)
Q Consensus 208 ~~l~V~~a~~k~ 219 (247)
+.|+|++++.+.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999997653
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=2.5e-22 Score=142.39 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.+|||+||++++++++|+++|+.|| .|.++++++|+.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 025814 217 WQE 219 (247)
Q Consensus 217 ~k~ 219 (247)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.3e-21 Score=139.00 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=79.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 025814 218 QERT 221 (247)
Q Consensus 218 k~~~ 221 (247)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.2e-21 Score=139.32 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 25
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=2.2e-22 Score=145.58 Aligned_cols=83 Identities=25% Similarity=0.276 Sum_probs=79.0
Q ss_pred CcEEEEcCCCC------CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-EeE
Q 025814 138 DYRLFCGDLGN------EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN-RPI 210 (247)
Q Consensus 138 ~~~lfV~nLp~------~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g-~~l 210 (247)
+++|||+|||+ ++++++|+++|++||.|.+|+|++|+.||.++|||||+|.+.++|++||+.|||..|+| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcccccc
Q 025814 211 KLRKSKWQER 220 (247)
Q Consensus 211 ~V~~a~~k~~ 220 (247)
+|.++.++++
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999976543
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-21 Score=136.35 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=138.14 Aligned_cols=85 Identities=27% Similarity=0.539 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+|||.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 216 KWQER 220 (247)
Q Consensus 216 ~~k~~ 220 (247)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.3e-21 Score=137.00 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987653
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=7.3e-21 Score=140.79 Aligned_cols=86 Identities=36% Similarity=0.672 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+||++++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45677999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987654
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=5e-21 Score=141.75 Aligned_cols=86 Identities=31% Similarity=0.461 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987654
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=138.93 Aligned_cols=86 Identities=24% Similarity=0.397 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987653
No 32
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=139.76 Aligned_cols=86 Identities=30% Similarity=0.438 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=138.38 Aligned_cols=85 Identities=15% Similarity=0.429 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||+ |||..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.7e-21 Score=135.72 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 025814 215 SKW 217 (247)
Q Consensus 215 a~~ 217 (247)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-21 Score=138.56 Aligned_cols=85 Identities=35% Similarity=0.626 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v-~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
...++|||+|||+++++++|+++|+.||.|.++ +|++++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345699999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 36
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1.4e-21 Score=151.45 Aligned_cols=131 Identities=18% Similarity=0.328 Sum_probs=103.4
Q ss_pred CCCceeeCccCHHHHHHHH----hcCccchhhhhhcccccccccCCC---CCCCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q 025814 83 QRDAQTITPEALESVKAAL----ASSDIEHKAETKKKSIPRKAAGQT---WEDPTLAEWPENDYRLFCGDLGNEVNDDVL 155 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al----~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L 155 (247)
-+|..++.+.+.+.|.+++ ++..+++ .+.......+...... .............++|||+|||+++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3677788888888888887 5667777 6666655443221111 111112223456789999999999999999
Q ss_pred HHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 156 SKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 156 ~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+++|+.||.|.+|+|+++ ++|||||+|.+.++|.+|+..|||..|+|+.|+|++++++.
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999876 58999999999999999999999999999999999998764
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.1e-21 Score=139.28 Aligned_cols=86 Identities=24% Similarity=0.457 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=137.68 Aligned_cols=85 Identities=21% Similarity=0.443 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKR---TGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~---tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
.+.++|||+|||+++++++|+++|+.||.|.+|.|++++. |+.++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456899999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
++++.+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99986653
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=139.88 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 40
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=7.9e-21 Score=141.24 Aligned_cols=82 Identities=37% Similarity=0.524 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+||++++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.1e-21 Score=139.28 Aligned_cols=86 Identities=17% Similarity=0.329 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC------CceeCCE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN------GKYVGNR 208 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~------g~~i~g~ 208 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||..|| |..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4556799999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEcccccc
Q 025814 209 PIKLRKSKWQER 220 (247)
Q Consensus 209 ~l~V~~a~~k~~ 220 (247)
.|+|+++..+..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=136.24 Aligned_cols=84 Identities=23% Similarity=0.484 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.|| |.+|+|++++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44567999999999999999999999997 999999999999999999999999999999999 9999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 43
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=139.79 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|+.||.|.+|.|++|+. |.++|||||+|.+.++|.+||. +||..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 456899999999999999999999999999999999986 9999999999999999999997 99999999999999865
No 44
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.85 E-value=7.3e-21 Score=150.36 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=104.6
Q ss_pred hhhhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q 025814 78 AQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVL 155 (247)
Q Consensus 78 ~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L 155 (247)
.....+++++||+|.+.++|.+|++. ..+.++.+.+.....+... .....++|||+|||.++++++|
T Consensus 48 ~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~-----------~~~~~~~l~v~nlp~~~t~~~l 116 (175)
T 1fje_B 48 VRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSK-----------KVRAARTLLAKNLSFNITEDEL 116 (175)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCS-----------TTGGGGEEEEESCCSSCCHHHH
T ss_pred CCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcccc-----------ccccCCEEEEeCCCCCCCHHHH
Confidence 34566799999999999999999853 3567777777665443221 1335669999999999999999
Q ss_pred HHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 156 SKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 156 ~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|++++++
T Consensus 117 ~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 117 KEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999988765 458999999999999999999999999999999999999999865
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=139.29 Aligned_cols=86 Identities=19% Similarity=0.395 Sum_probs=80.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 986543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-21 Score=138.63 Aligned_cols=86 Identities=30% Similarity=0.597 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.6e-20 Score=136.63 Aligned_cols=85 Identities=20% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---EeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN---RPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g---~~l~ 211 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++ +|.++|||||+|.+.++|++||+.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4456799999999999999999999999999999999997 89999999999999999999999999999988 9999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|++++.+..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987653
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=8.5e-21 Score=139.33 Aligned_cols=85 Identities=20% Similarity=0.375 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98654
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=143.67 Aligned_cols=86 Identities=24% Similarity=0.440 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+||+.|||..|+|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=139.50 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=80.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
....++|||+|||+++++++|+++|+.||.|. .|+|++++.+|.++|||||+|.+.++|++||+.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45567999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CEeEEEEEcccccc
Q 025814 207 NRPIKLRKSKWQER 220 (247)
Q Consensus 207 g~~l~V~~a~~k~~ 220 (247)
|+.|+|++++.+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987654
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=2.3e-20 Score=131.22 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|+ .+++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 455679999999999999999999999999999999999999999999999999999999999 5688999999999987
Q ss_pred c
Q 025814 215 S 215 (247)
Q Consensus 215 a 215 (247)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.3e-20 Score=132.95 Aligned_cols=80 Identities=20% Similarity=0.418 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|+ .|||..++|+.|+|++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 348999999999999999999999999999999999989999999999999999999999 9999999999999999875
Q ss_pred c
Q 025814 218 Q 218 (247)
Q Consensus 218 k 218 (247)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=137.53 Aligned_cols=86 Identities=16% Similarity=0.366 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEec-CCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD-KRTGKTKGYGFISFANPSDIAAALKEM-NGKYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~~FV~f~~~~~a~~Al~~l-~g~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|+++ +.+|.++|||||+|.+.++|++||..| ||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445679999999999999999999999999999999999 789999999999999999999999999 999999999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
++++.+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=136.19 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCee-EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe----
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN-MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP---- 209 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~---- 209 (247)
....++|||+|||+++++++|+++|+.||.|. +|+|++++.+|.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025814 210 IKLRKSKWQE 219 (247)
Q Consensus 210 l~V~~a~~k~ 219 (247)
|+|.+++...
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=7.1e-21 Score=138.76 Aligned_cols=86 Identities=22% Similarity=0.445 Sum_probs=80.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCEeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV---GNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i---~g~~l~ 211 (247)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|++|++.|||..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|++++.+.+
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=135.81 Aligned_cols=84 Identities=32% Similarity=0.643 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|+.+ +|.++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445679999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987653
No 57
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.84 E-value=1.7e-20 Score=159.55 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=120.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+.....++|++||.|.+.+++.+|+. +..+.++.+.+........... ....++|||
T Consensus 120 G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~----------~~~~~~l~v 189 (284)
T 3smz_A 120 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA----------LLHSRCLCV 189 (284)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT----------TTSCSEEEE
T ss_pred CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc----------cCCccEEEE
Confidence 556555555556667789999999999999998874 5578888888877655433221 345669999
Q ss_pred cCCCCCC-cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccccc
Q 025814 144 GDLGNEV-NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220 (247)
Q Consensus 144 ~nLp~~~-~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~ 220 (247)
+|||+++ ++++|+++|+.||.|.++.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 190 ~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 190 DRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999995 999999999999999999999996 899999999999999999999999999999999999999987764
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1.1e-20 Score=138.72 Aligned_cols=87 Identities=18% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 133 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
+...+.++|||+||++++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+||..+ |..|+|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 33566789999999999999999999999999999999999999999999999999999999999875 59999999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
+++..+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 59
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=136.95 Aligned_cols=83 Identities=20% Similarity=0.485 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT-GKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~t-g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
...++|||+|||+++++++|+++|+.|| |.+|.|++++.+ |.++|||||+|.+.++|++|| .|||..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=140.34 Aligned_cols=85 Identities=32% Similarity=0.606 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456699999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=3.1e-20 Score=135.58 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4557799999999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-21 Score=140.64 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+||++++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3568999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred ccc
Q 025814 217 WQE 219 (247)
Q Consensus 217 ~k~ 219 (247)
.+.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=132.28 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK-TKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~-~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.++|||+|||.++++++|+++|+.||.|.++.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999999999999987766 89999999999999999999999999999999999987
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=136.57 Aligned_cols=85 Identities=21% Similarity=0.423 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||.. ||..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45667999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=134.89 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.5e-21 Score=137.56 Aligned_cols=84 Identities=24% Similarity=0.498 Sum_probs=79.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|+++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 45899999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred cccc
Q 025814 218 QERT 221 (247)
Q Consensus 218 k~~~ 221 (247)
+...
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 6543
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=9.4e-21 Score=143.35 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++.+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=133.52 Aligned_cols=81 Identities=27% Similarity=0.575 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|+|++++. |.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44567999999999999999999999999999999999974 99999999999999999999999999999999999998
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=137.41 Aligned_cols=84 Identities=27% Similarity=0.458 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++||+.||+ .|+|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..+.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97543
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-21 Score=139.00 Aligned_cols=83 Identities=22% Similarity=0.492 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecC-CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK-RTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~-~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
....++|||+||++++++++|+++|+.|| |.+|+|++++ .+|.++|||||+|.+.++|.+|| .|||..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45567999999999999999999999999 9999999998 68999999999999999999999 999999999999999
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
+++.+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.7e-20 Score=132.33 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567999999999999999999999999999999999853 3899999999999999999999999999999999999
Q ss_pred ccccccc
Q 025814 215 SKWQERT 221 (247)
Q Consensus 215 a~~k~~~ 221 (247)
++.+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=135.73 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.||.|.+|.|++++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456799999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8754
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=133.84 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
..+.++|||+|||+++++++|+ ++|+.||.|.+|+|+.|+.+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999999765 8999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025814 211 KLRKSKWQE 219 (247)
Q Consensus 211 ~V~~a~~k~ 219 (247)
+|++++.+.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 74
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.83 E-value=2.4e-20 Score=146.90 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=106.5
Q ss_pred CCccccccccchhhh--cCCCceeeCccCHHHHHHHHhc---Cccc---hhhhhhcccccccccCCCCCCCCCCCCCCCC
Q 025814 67 APVYSLPQYHQAQQL--FQRDAQTITPEALESVKAALAS---SDIE---HKAETKKKSIPRKAAGQTWEDPTLAEWPEND 138 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~a~~al~~---~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 138 (247)
|.+..+....+.... .+++++||+|.+.++|.+|+.. ..+. ++.+.......... .....
T Consensus 28 G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 95 (175)
T 3nmr_A 28 GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN------------NAVED 95 (175)
T ss_dssp SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC------------SCGGG
T ss_pred CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc------------ccCCC
Confidence 666666555555544 7899999999999999999863 2222 22222222211111 12345
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG---NRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~---g~~l~V~~a 215 (247)
++|||+|||+.+++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|.+|++.|||..+. |+.|+|.++
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 689999999999999999999999999999999995 6999999999999999999999999998776 499999987
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 175 d 175 (175)
T 3nmr_A 175 D 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=137.33 Aligned_cols=84 Identities=37% Similarity=0.680 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKY-VGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~-i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|+. ||.|.+|.|++++ +|.++|||||+|.+.++|.+||+.|||.. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345679999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
+++..+.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987654
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-21 Score=145.59 Aligned_cols=86 Identities=17% Similarity=0.341 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK----YVGNR 208 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~----~i~g~ 208 (247)
....++|||+||++++++++|+++|+.||.|.. |+|++|+.+|.++|||||+|.+. +|.+|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEEccccccc
Q 025814 209 PIKLRKSKWQERT 221 (247)
Q Consensus 209 ~l~V~~a~~k~~~ 221 (247)
.|+|++++++.+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 77
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=4.3e-21 Score=146.33 Aligned_cols=86 Identities=20% Similarity=0.433 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34466899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-21 Score=134.64 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.4e-20 Score=134.43 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred c
Q 025814 216 K 216 (247)
Q Consensus 216 ~ 216 (247)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=7.6e-21 Score=157.48 Aligned_cols=85 Identities=13% Similarity=0.208 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..++|||+||++++++++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 566899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 025814 215 SKWQERT 221 (247)
Q Consensus 215 a~~k~~~ 221 (247)
++.....
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9866543
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.6e-20 Score=129.66 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.| .|.+|+|+++ .+|.++|||||+|.+.++|++||. |||..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4456799999999999999999999999 9999999999 789999999999999999999998 999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 82
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=3.3e-20 Score=158.40 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred CccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 68 PVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
.+..+....+.. ..+++++||.|.+.+++..|+. +..+.++.+.+....++...... .......++|||+
T Consensus 144 ~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------~~~~~~~~~l~v~ 216 (292)
T 2ghp_A 144 VALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------DSATLEGREIMIR 216 (292)
T ss_dssp CCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------------CCTTTEEEEE
T ss_pred CeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc------cccCCCCceEEEE
Confidence 444444433333 4579999999999999998876 45788888887766544332211 0113456799999
Q ss_pred CCCCC-CcHHHHHHHhccCCCeeEEEEEecCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 145 DLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKR-TGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 145 nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~-tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
|||+. +++++|+++|+.||.|..|+|+++.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++.+|
T Consensus 217 nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 217 NLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999 99999999999999999999999875 5999999999999999999999 99999999999999999875
No 83
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-20 Score=132.54 Aligned_cols=83 Identities=23% Similarity=0.413 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++. .++|||||+|.+.++|++|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45567999999999999999999999999999999999853 3689999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98754
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=3e-20 Score=131.92 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.++.|+++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987543
No 85
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=141.41 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|++||. |||..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456799999999999999999999999999987777777899999999999999999999998 999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 976553
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=5.9e-20 Score=144.61 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 986653
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=131.52 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||. ++..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4456789999999999999999999999999999999999999999999999999999999997 58899999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 88
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=2.7e-20 Score=139.87 Aligned_cols=86 Identities=20% Similarity=0.383 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 986554
No 89
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-21 Score=140.15 Aligned_cols=93 Identities=30% Similarity=0.432 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 126 ~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
+..+.........++|||+|||+++++++|+++|+.||.|.. .++.++.+|.++|||||+|.+.++|++||+ |||..|
T Consensus 5 ~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 5 LEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp CCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 444444444667789999999999999999999999999988 677777789999999999999999999998 999999
Q ss_pred CCEeEEEEEcccccc
Q 025814 206 GNRPIKLRKSKWQER 220 (247)
Q Consensus 206 ~g~~l~V~~a~~k~~ 220 (247)
+|+.|+|.+++.+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 83 FGNEIKLEKPKGRDG 97 (101)
T ss_dssp TTBCCEEECCSCCCC
T ss_pred CCcEEEEEEcCCCCC
Confidence 999999999987653
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-20 Score=136.45 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG--KYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g--~~i~g~~l~V 212 (247)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|+|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 455679999999999999999999999999999999876 68999999999999999998864 7899999999
Q ss_pred EEccccccc
Q 025814 213 RKSKWQERT 221 (247)
Q Consensus 213 ~~a~~k~~~ 221 (247)
.+++.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1e-19 Score=136.41 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97643
No 92
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=8.3e-20 Score=142.35 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98654
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=136.98 Aligned_cols=82 Identities=21% Similarity=0.472 Sum_probs=77.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++||.. ||..|+|+.|+|+++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999977 99999999999999987
Q ss_pred ccc
Q 025814 218 QER 220 (247)
Q Consensus 218 k~~ 220 (247)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=9.8e-21 Score=129.37 Aligned_cols=75 Identities=20% Similarity=0.449 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++ |||..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998899999999999999999999996 9999999999999875
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=134.91 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||+.++++++|+++|+.||.|.+|++++++ +.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4556799999999999999999999999999999999984 45899999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++.+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-20 Score=137.84 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEE-ecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEeEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVV-RDKRTGKTKGYGFISFANPSDIAAALKEMN--GKYVGNRPIK 211 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~i~-~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~--g~~i~g~~l~ 211 (247)
.+.++|||+|||+++++++|+++|+.||. |.+|.++ .++.+|.++|||||+|.+.++|.+|++.|| +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 888899999999999999999999999996 5899999999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|++++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=5.5e-20 Score=137.84 Aligned_cols=81 Identities=26% Similarity=0.422 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+||++++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 348999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred cc
Q 025814 218 QE 219 (247)
Q Consensus 218 k~ 219 (247)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=136.35 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCcHHHHH---HHhccCCCeeEEEEEecCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 137 NDYRLFCGDLGNEVNDDVLS---KAFSRFPSFNMAKVVRDKRTG---KTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~---~~F~~~G~i~~v~i~~~~~tg---~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
..++|||+|||+++++++|+ ++|++||.|.+|.|++++.++ .++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45589999999999999999 999999999999999987654 456999999999999999999999999999999
Q ss_pred EEEEcccccc
Q 025814 211 KLRKSKWQER 220 (247)
Q Consensus 211 ~V~~a~~k~~ 220 (247)
+|+++..+..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999987764
No 99
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=6.2e-20 Score=136.68 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
....++|||+|||+++++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++||+ |||..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 455679999999999999999999999999 89999999976 9999999999999999999997 999999999999
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|.++..++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986544
No 100
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=137.78 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i-~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
..+.++|||+|||+++++++|+++|+.||.| .+|+|++|+ +|.++|||||+|.+.++|++||.. ||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4566799999999999999999999999999 899999998 999999999999999999999966 9999999999999
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=6.2e-21 Score=134.96 Aligned_cols=80 Identities=21% Similarity=0.453 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999 99999999999999999999999765
Q ss_pred c
Q 025814 219 E 219 (247)
Q Consensus 219 ~ 219 (247)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-20 Score=128.77 Aligned_cols=76 Identities=21% Similarity=0.480 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.+| ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999999899999999999999999999999999 9999999999886
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=138.26 Aligned_cols=81 Identities=31% Similarity=0.485 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||.++++++|+++|+.||.|.+++|++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 025814 215 S 215 (247)
Q Consensus 215 a 215 (247)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 104
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.81 E-value=1.8e-19 Score=153.23 Aligned_cols=120 Identities=21% Similarity=0.285 Sum_probs=106.8
Q ss_pred hcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHH
Q 025814 81 LFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSK 157 (247)
Q Consensus 81 ~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~ 157 (247)
..+++++||.|.+.++|..|+. +..+.++.+.+.. ....++|||+|||+++++++|++
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-------------------~~~~~~l~v~nlp~~~t~~~l~~ 114 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-------------------QPTDALLCVANLPPSLTQQQFEE 114 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-------------------CCCSCEEEEESCCTTCCHHHHHH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-------------------cCCCCEEEEcCCCCcCCHHHHHH
Confidence 4568999999999999999884 4567777766643 23445999999999999999999
Q ss_pred HhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 158 AFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 158 ~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
+|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++..+.
T Consensus 115 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 115 LVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999997654
No 105
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=132.68 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||. .+|+|++|+ +|+++|||||+|.+.++|++|| .+|+..|+|+.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 455679999999999999999999999994 599999997 8999999999999999999999 6899999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876553
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=133.53 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-
Q 025814 136 ENDYRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNR- 208 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~------~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~- 208 (247)
...++|||+|||+.+ ++++|+++|+.||.|.+|.|++ .+|.++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345699999999999 7899999999999999999883 5899999999999999999999999999999998
Q ss_pred eEEEEEcccccc
Q 025814 209 PIKLRKSKWQER 220 (247)
Q Consensus 209 ~l~V~~a~~k~~ 220 (247)
.|+|.++...++
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999876543
No 107
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=131.06 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|..+ +.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445679999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 986543
No 108
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=132.09 Aligned_cols=83 Identities=19% Similarity=0.419 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--------C
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV--------G 206 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i--------~ 206 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|++|+..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CEeEEEEEcccc
Q 025814 207 NRPIKLRKSKWQ 218 (247)
Q Consensus 207 g~~l~V~~a~~k 218 (247)
++.|.|++++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 109
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.7e-19 Score=161.23 Aligned_cols=84 Identities=23% Similarity=0.463 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+||++++++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 025814 216 KWQE 219 (247)
Q Consensus 216 ~~k~ 219 (247)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 110
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=5.6e-20 Score=140.14 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
..+.++|||+|||+++++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ |||..|+||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 455679999999999999999999999999 89999999986 9999999999999999999998 999999999999
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|.++..++
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99986543
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=131.72 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
....++|||+|||+++++++|+++|+.||.|.+ |.|+.+ .+|+++|||||+|.+.++|++||.. |+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345679999999999999999999999999987 889888 7999999999999999999999976 9999999999999
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
++..++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=129.95 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKY--VGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~--i~g~~l~V 212 (247)
..+.++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|||.. |+|+.|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 445679999999999999999999999999999999854 6899999999999999999999874 88999999
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
.+++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998654
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=129.76 Aligned_cols=82 Identities=27% Similarity=0.433 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.| +++++ .+|.++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567799999999999999999999999977 56666 6899999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987643
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=128.27 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM--NGKYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l--~g~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.| ++..|+|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345679999999999999999999999999999988865 789999999999999999976 567899999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
.+++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99986553
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-19 Score=126.27 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
..|||+||++.++|++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4799999999999999999999999999999865 5899999999999999999999999999999999998
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=131.28 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCEeEE
Q 025814 135 PENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK--YVGNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~--~i~g~~l~ 211 (247)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.||+. .|+|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34567999999999 9999999999999999999999876 479999999999999999998864 69999999
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|.+++.+.
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998544
No 117
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=127.89 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.|+ .+.+++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45567999999999999999999999874 788889988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987654
No 118
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.80 E-value=3.9e-19 Score=151.00 Aligned_cols=76 Identities=28% Similarity=0.463 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~~ 214 (247)
...++|||+||+.++++++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..|+ |+.|+|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356789999999999999999999999999999998764 589999999999999999999999999 99999999
Q ss_pred cc
Q 025814 215 SK 216 (247)
Q Consensus 215 a~ 216 (247)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 119
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=132.01 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
+.++|||+|||+++++++|+++|+.| .|.+|.|++|+. |+++|||||+|.+.++|++|| .|||..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35689999999999999999999999 899999999975 999999999999999999999 799999999999998876
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 120
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=135.77 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
....++|||+|||+++++++|+++|+.||. |.+|.|++++. |.++|||||+|.+.++|++||. |||..|+|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456779999999999999999999999998 89999999976 9999999999999999999997 999999999999
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|.++..++
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987543
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-20 Score=127.61 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-eEE
Q 025814 139 YRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNR-PIK 211 (247)
Q Consensus 139 ~~lfV~nLp~~~------~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~-~l~ 211 (247)
++|||+|||+.+ ++++|+++|++||.|.++.+.+ .+|.++|||||+|.+.++|++|++.|||..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7899999999999999999873 5899999999999999999999999999999999 887
Q ss_pred E
Q 025814 212 L 212 (247)
Q Consensus 212 V 212 (247)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 7
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=133.39 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG--KYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g--~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|++ ..|+|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345669999999999999999999999999999999876 68999999999999999998885 6899999999
Q ss_pred EEccccccc
Q 025814 213 RKSKWQERT 221 (247)
Q Consensus 213 ~~a~~k~~~ 221 (247)
.+++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 123
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=137.12 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
...++|||+||++.+++++|+ ++|++||.|.+|.+.+ +|.++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 446799999999999999876 6999999999987753 688999999999999999999999999999999999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|.+++.+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987653
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=6.1e-19 Score=126.70 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
....++|||+||++ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 55677999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred Eccccc
Q 025814 214 KSKWQE 219 (247)
Q Consensus 214 ~a~~k~ 219 (247)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998654
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.2e-19 Score=132.14 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
+...++|||+|||+++++++|+++|+.|| .|..+.|.. +.++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 55677999999999999999999999999 899998853 3478999999999999999999999999999999999
Q ss_pred Ecccc
Q 025814 214 KSKWQ 218 (247)
Q Consensus 214 ~a~~k 218 (247)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 126
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=129.32 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-----Ee
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN-----RP 209 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g-----~~ 209 (247)
....++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345679999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEEcccccc
Q 025814 210 IKLRKSKWQER 220 (247)
Q Consensus 210 l~V~~a~~k~~ 220 (247)
|+|+++..+.+
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987654
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=127.68 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4556799999999999999999999999988766 24799999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=127.02 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|. +.++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44567999999999999999999999999997 66664 46789999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2.4e-19 Score=132.58 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.++++ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98643
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-19 Score=129.06 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+||+.++++++|+++|+.||.|.++++. .++|||||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 345699999999999999999999999999999997 34789999999999999999999999999999999998
Q ss_pred ccc
Q 025814 216 KWQ 218 (247)
Q Consensus 216 ~~k 218 (247)
+.+
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 131
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=124.62 Aligned_cols=78 Identities=18% Similarity=0.392 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.++.++ +|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4566799999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=5.4e-20 Score=125.57 Aligned_cols=75 Identities=19% Similarity=0.432 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5999999999999875
No 133
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-19 Score=134.67 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=72.0
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q 025814 139 YRLFCGDL----GNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFAN----PSD----IAAALK--EMNGKY 204 (247)
Q Consensus 139 ~~lfV~nL----p~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~----~~~----a~~Al~--~l~g~~ 204 (247)
..|||+|| ++.+++++|+.+|+.||.|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 37999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCEeEEEEEccc
Q 025814 205 VGNRPIKLRKSKW 217 (247)
Q Consensus 205 i~g~~l~V~~a~~ 217 (247)
|+|+.|+|.+.+-
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=125.82 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
..+.++|||+|||+++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 455679999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987654
No 135
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3.2e-19 Score=127.75 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
....++|||+|||+++++++|+ ++|++||.|.+|.+.+ +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456799999999999999999 9999999999998874 58889999999999999999999999999999999
Q ss_pred EEEEcccccc
Q 025814 211 KLRKSKWQER 220 (247)
Q Consensus 211 ~V~~a~~k~~ 220 (247)
+|++++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 136
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=128.90 Aligned_cols=80 Identities=23% Similarity=0.474 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||+.++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|+..|||..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445669999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1e-18 Score=128.06 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|++||.|.+|.++ +|||||+|.+.++|++|+..|||..|+|+.|+|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456799999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98654
No 138
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=127.73 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK--YVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~--~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.||+. .|+|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999998764 689999999999999999988764 599999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
.+++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=133.37 Aligned_cols=86 Identities=23% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999995443333323799999999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=122.54 Aligned_cols=78 Identities=15% Similarity=0.362 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.++++ ||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 456679999999999999999999999999999999744 999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+.+
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987654
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=1.1e-18 Score=142.17 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=104.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhcccccccccCCC-----CCC----------
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKKSIPRKAAGQT-----WED---------- 128 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~~~~r~~~~~~-----~~~---------- 128 (247)
|.+..+....+ .+|++||.|++.++|..|+ ++..+.++.+.+..+......... ...
T Consensus 30 G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 104 (205)
T 3tyt_A 30 GNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESR 104 (205)
T ss_dssp SCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCT
T ss_pred CCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCc
Confidence 55555544332 4899999999998888886 456788888887765432110000 000
Q ss_pred -CC--------CCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCe--eEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 025814 129 -PT--------LAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSF--NMAKVVRDKRTGKTKGYGFISFANPSDIAAAL 197 (247)
Q Consensus 129 -~~--------~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i--~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al 197 (247)
.. ......+.++|||+|||+++++++|+++|+.||.| .+++++.++ |..+|||||+|.+.++|.+||
T Consensus 105 ~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 105 NNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp TCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHH
T ss_pred cccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHH
Confidence 00 00112345689999999999999999999999999 899998874 666799999999999999999
Q ss_pred HHhCCceeCCE----eEEEEEc
Q 025814 198 KEMNGKYVGNR----PIKLRKS 215 (247)
Q Consensus 198 ~~l~g~~i~g~----~l~V~~a 215 (247)
..|||..|.|+ .+.|+++
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 99999999886 4666554
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=3.9e-19 Score=128.62 Aligned_cols=81 Identities=25% Similarity=0.494 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|+.||.|.+|.+++++ +|.++|||||+|.+.++|++|+. ||..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45689999999999999999999999999999999998 99999999999999999999997 9999999999999987
Q ss_pred cccc
Q 025814 217 WQER 220 (247)
Q Consensus 217 ~k~~ 220 (247)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 143
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8e-19 Score=125.85 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG--NRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~--g~~l~V 212 (247)
....++|||+|||+++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|++|++.|||..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345579999999999999999999999999999998754 689999999999999999999999999 999999
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=121.24 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEM-NGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l-~g~~i~g~~l~V~ 213 (247)
....++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|++|++.| ||..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345668999999999999999999999999999999874 689999999999999999989 9999999999999
Q ss_pred Ecc
Q 025814 214 KSK 216 (247)
Q Consensus 214 ~a~ 216 (247)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-20 Score=139.50 Aligned_cols=85 Identities=25% Similarity=0.435 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
.+.++|||+|||+++++++|+++|+.||.|.. |+|++++.+|.++|||||+|.+.++|++|+..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44568999999999999999999999999998 9999998899999999999999999999999999999999
Q ss_pred EeEEEEEcccccc
Q 025814 208 RPIKLRKSKWQER 220 (247)
Q Consensus 208 ~~l~V~~a~~k~~ 220 (247)
+.|+|++++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987654
No 146
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.78 E-value=1.5e-18 Score=146.23 Aligned_cols=118 Identities=24% Similarity=0.326 Sum_probs=101.9
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHH
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKA 158 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~ 158 (247)
..++++||.|.+.++|..|+. +..+.++.+.+.... +..+|||+||++.+++++|+++
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~-------------------~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT-------------------HGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-------------------CSSEEEEESCCTTCCHHHHHHH
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-------------------cCCcccccCCCCCCCHHHHHHH
Confidence 358999999999999998875 456777777775532 3458999999999999999999
Q ss_pred hccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC-CceeC---CEeEEEEEccccc
Q 025814 159 FSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN-GKYVG---NRPIKLRKSKWQE 219 (247)
Q Consensus 159 F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~-g~~i~---g~~l~V~~a~~k~ 219 (247)
|+.||.|.+|.|+.| .+|.++|||||+|.+.++|.+|+..|| |..+. |+.|.|.++....
T Consensus 117 F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 117 FSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999999999999 589999999999999999999999995 55555 9999999987653
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.4e-18 Score=142.01 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+|.++|||||+|.+.++|.+||+.|||..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 025814 217 WQE 219 (247)
Q Consensus 217 ~k~ 219 (247)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 544
No 148
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=139.89 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=101.8
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCC-------------------C---CCCCCCCCCCCC
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQT-------------------W---EDPTLAEWPEND 138 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~-------------------~---~~~~~~~~~~~~ 138 (247)
++++||.|.+.++|..|+. +..+.++.+.+............ . ............
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 7899999999999888875 45778888877655433111000 0 000011123447
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeEEEEEcc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPIKLRKSK 216 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~~a~ 216 (247)
++|||+||+.++++++|+++|+.|| .|.+++++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|+|.+++
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 7999999999999999999999999 9999999764 2789999999999999999999999999 9999999987
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=138.61 Aligned_cols=85 Identities=27% Similarity=0.480 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEE--E---EecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK--V---VRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP 209 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~--i---~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~ 209 (247)
....++|||+|||+++++++|+++|+.||.|..+. + ++...+|.++|||||+|.+.++|.+||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34556999999999999999999999999987641 1 111247999999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025814 210 IKLRKSKWQE 219 (247)
Q Consensus 210 l~V~~a~~k~ 219 (247)
|+|.+++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=128.39 Aligned_cols=77 Identities=23% Similarity=0.548 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
++|||+|||+++++++|+++|+.||.|.+|.++++ ++|||||+|.+.++|++|++.|||..++|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999887 6899999999999999999999999999999999999876
Q ss_pred cc
Q 025814 219 ER 220 (247)
Q Consensus 219 ~~ 220 (247)
.+
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=133.31 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCe----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSF----NMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i----~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
.+.++|||+|||+++++++|+++|+.||.| .+|.|++| .+|+++|||||+|.+.++|++||+. |+..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345699999999999999999999999975 68999999 4899999999999999999999975 99999999999
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
|..+..++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99886543
No 152
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=3.6e-18 Score=141.13 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=102.0
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCC-------------------CCCCC---CCCCCCCC
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQT-------------------WEDPT---LAEWPEND 138 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~-------------------~~~~~---~~~~~~~~ 138 (247)
++++||+|.+.++|.+|+. +..+.++.+.+............ ...+. ........
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 7899999999999999875 45778888877665533111000 00000 01123446
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEeEEEEEcc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG-NRPIKLRKSK 216 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~~a~ 216 (247)
++|||+||+.++++++|+++|+.|| .|..|+++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|+|.+++
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 8999999999999999999999999 9999999653 3689999999999999999999999999 9999999987
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.6e-19 Score=125.28 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
..+.++|||+|||+ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45577999999999 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred Eccccccc
Q 025814 214 KSKWQERT 221 (247)
Q Consensus 214 ~a~~k~~~ 221 (247)
+++.+.+.
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876554
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=127.97 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEeEE
Q 025814 135 PENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG--KYVGNRPIK 211 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g--~~i~g~~l~ 211 (247)
....++|||+|||++ +++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.||+ ..|+|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445679999999998 999999999999999999999753 68999999999999999998864 569999999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|.+++.+.+
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976554
No 155
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.76 E-value=1.2e-18 Score=148.77 Aligned_cols=131 Identities=8% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCG 144 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~ 144 (247)
|.+..+....+... +++++||.|.+.++|.+|+.. ..+.++.+.+... ..++|||+
T Consensus 66 G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~--------------------~~~~l~v~ 123 (292)
T 2ghp_A 66 GPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL--------------------TECTLWMT 123 (292)
T ss_dssp SCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC--------------------CSCEEEEE
T ss_pred CCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC--------------------CCCEEEEE
Confidence 55555444433322 489999999999999999953 3455665555432 34589999
Q ss_pred CCCCCCcHHHHHHHhccCC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccccc
Q 025814 145 DLGNEVNDDVLSKAFSRFP-SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 220 (247)
Q Consensus 145 nLp~~~~e~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~~ 220 (247)
|||+++++++|+++|+.|| .|.+|.+++++. |.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++.+
T Consensus 124 nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 124 NFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp CCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred CCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 9999999999999999999 999999999864 88999999999999999999999999999999999999987654
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=4.2e-18 Score=132.83 Aligned_cols=82 Identities=26% Similarity=0.494 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 45899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred cc
Q 025814 218 QE 219 (247)
Q Consensus 218 k~ 219 (247)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-19 Score=129.08 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356899999999999999999999999999998864 46899999999999999999999999999999999997
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 158
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=121.84 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.++.++++ ||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445678999999999999999999999999999999744 999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98654
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=138.45 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+||++++++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556799999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87643
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=7.3e-19 Score=132.08 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|++||+ +++..|+||.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456789999999999999999999999 576 899999976 9999999999999999999996 5889999999999
Q ss_pred EEcccc
Q 025814 213 RKSKWQ 218 (247)
Q Consensus 213 ~~a~~k 218 (247)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=3.3e-18 Score=133.78 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred cc
Q 025814 218 QE 219 (247)
Q Consensus 218 k~ 219 (247)
+.
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 162
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.6e-19 Score=136.93 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.|| |.+|.|++|+. |+++|||||+|.+.++|++|| .+|+..|+|+.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999 77999999975 999999999999999999999 8999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
+..+..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876654
No 163
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=120.40 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccC--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRF--PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|+.| |.|.+|.+. +|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4556799999999999999999999999 999988774 569999999999999999999999999999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
++++.+.+
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=122.93 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG-KYVGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g-~~i~g~~l~V 212 (247)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345668999999999999999999999999 5555552 478999999999999999999999 9999999999
Q ss_pred EEcccccc
Q 025814 213 RKSKWQER 220 (247)
Q Consensus 213 ~~a~~k~~ 220 (247)
++++.+..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987543
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=4.7e-18 Score=123.21 Aligned_cols=78 Identities=31% Similarity=0.503 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
...++|||+|||+++++++|+++|+.||.|.+|.+++ |||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4456899999999999999999999999999999874 49999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 216 KWQERT 221 (247)
Q Consensus 216 ~~k~~~ 221 (247)
+.+...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 166
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=7.1e-18 Score=123.72 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
...++|||+||+++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999999 999999999999999999988 478999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
++..
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9743
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=119.26 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|| ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|++||..|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 445679999996 89999999999999999999884 4678999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987653
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=6.5e-18 Score=118.99 Aligned_cols=75 Identities=9% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45689999999999999999999999 99999884 578999999999999999999999999999999999986
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 169
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=122.04 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v-~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
...++|||+|||+++++++|+++|+.||.|.++ .|+.++.+|. |||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999 5888765544 99999999999999999999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=120.41 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|++||. |||..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34589999999999999999999999999987 66666666 99999999999999998 99999999999998876
Q ss_pred ccc
Q 025814 217 WQE 219 (247)
Q Consensus 217 ~k~ 219 (247)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.7e-17 Score=124.84 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--EeEEEEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY-GFISFANPSDIAAALKEMNGKYVGN--RPIKLRK 214 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~ 214 (247)
--.|||+||++.+++++|+++|++||.|.+|.++.+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 347899999999999999999999999999988764 2688 9999999999999999999999988 9999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98764
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=9.1e-18 Score=118.64 Aligned_cols=76 Identities=11% Similarity=0.308 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCEeEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKY--VGNRPIKL 212 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~--i~g~~l~V 212 (247)
.....+|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ |+|.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 445669999999999999999999999999999999875 68999999999999883 55654 56999999
Q ss_pred EEccccc
Q 025814 213 RKSKWQE 219 (247)
Q Consensus 213 ~~a~~k~ 219 (247)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998764
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=8.1e-18 Score=131.23 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EeEEEEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN--RPIKLRK 214 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~ 214 (247)
...+|||+||++.+++++|+++|++||.|.+|.|..+ ..+|||||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457999999999999999999999999999998754 257899999999999999999999999965 9999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.3e-17 Score=133.65 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|.+||+. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45567999999999999999999999999999999999999999999999999999999999955 99999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..+.
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 175
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=5e-18 Score=125.68 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEe-----EE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRP-----IK 211 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~-----l~ 211 (247)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4568999999999999999999999999999999876 89999999999999999999999999998 77
Q ss_pred EEEcccc
Q 025814 212 LRKSKWQ 218 (247)
Q Consensus 212 V~~a~~k 218 (247)
|..+..+
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7776553
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=117.48 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCcHHH----HHHHhccC-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEE
Q 025814 137 NDYRLFCGDLGNEVNDDV----LSKAFSRF-PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIK 211 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~----L~~~F~~~-G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~ 211 (247)
..+.|||+|||+.+++++ |+++|++| |.|.+| +| |||||.|.+.++|++|++.|||..+.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 333499999999999988 55899999 599988 44 9999999999999999999999999999999
Q ss_pred EEEcccccc
Q 025814 212 LRKSKWQER 220 (247)
Q Consensus 212 V~~a~~k~~ 220 (247)
|.+++.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999986643
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=123.44 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT---GKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |.++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4456899999999999999999999999999 888888777 7999999999999999999999984 367777776
Q ss_pred EEcc
Q 025814 213 RKSK 216 (247)
Q Consensus 213 ~~a~ 216 (247)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.5e-17 Score=134.12 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=72.0
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEc
Q 025814 137 NDYRLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKS 215 (247)
Q Consensus 137 ~~~~lfV~nLp-~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 215 (247)
+.++|||+||+ +.+++++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|++||+.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45699999999 89999999999999999999999876 3799999999999999999999999999999999998
Q ss_pred cccc
Q 025814 216 KWQE 219 (247)
Q Consensus 216 ~~k~ 219 (247)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=7.4e-17 Score=120.68 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--EeEEEEEc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY-GFISFANPSDIAAALKEMNGKYVGN--RPIKLRKS 215 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-~FV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a 215 (247)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 276 9999999999999999999999987 69999999
Q ss_pred cccc
Q 025814 216 KWQE 219 (247)
Q Consensus 216 ~~k~ 219 (247)
+.+.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 180
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.4e-18 Score=123.47 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=68.8
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----CCE
Q 025814 136 ENDYRLFC--GDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV-----GNR 208 (247)
Q Consensus 136 ~~~~~lfV--~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i-----~g~ 208 (247)
...++||| |||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34568999 779999999999999999999999887542 78999999999999999999999998 789
Q ss_pred eEEEEEcccc
Q 025814 209 PIKLRKSKWQ 218 (247)
Q Consensus 209 ~l~V~~a~~k 218 (247)
.|.|.+++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998643
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=2.1e-17 Score=134.46 Aligned_cols=83 Identities=27% Similarity=0.469 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999998876
Q ss_pred ccc
Q 025814 218 QER 220 (247)
Q Consensus 218 k~~ 220 (247)
+..
T Consensus 108 ~~~ 110 (216)
T 2qfj_A 108 IGQ 110 (216)
T ss_dssp CGG
T ss_pred ccc
Confidence 543
No 182
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.2e-17 Score=127.67 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=74.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcccc
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k 218 (247)
++|||+|||.++++++|+++|+.||.|.++++++++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999996 5889999999999999999999999999999999999998755
Q ss_pred c
Q 025814 219 E 219 (247)
Q Consensus 219 ~ 219 (247)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=3.3e-17 Score=122.37 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|++|+..|||..|+|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445679999996 69999999999999999999885 4678999999999999999999999999999999999
Q ss_pred cccccc
Q 025814 215 SKWQER 220 (247)
Q Consensus 215 a~~k~~ 220 (247)
++.+..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987653
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=2.4e-17 Score=115.49 Aligned_cols=71 Identities=17% Similarity=0.443 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRF----P-------SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
..++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|++|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45699999999999999999999999 8 8999988765 789999999999999999 9999999
Q ss_pred CCEeEEEEE
Q 025814 206 GNRPIKLRK 214 (247)
Q Consensus 206 ~g~~l~V~~ 214 (247)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.6e-16 Score=115.67 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhccCCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCEe
Q 025814 136 ENDYRLFCGDLGN-----EVNDDVLSKAFSRFPSFNMAKVVRDKRT-GKTKGYGFISFANPSDIAAALKEMNGKYVGNRP 209 (247)
Q Consensus 136 ~~~~~lfV~nLp~-----~~~e~~L~~~F~~~G~i~~v~i~~~~~t-g~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~ 209 (247)
...++|+|.||-. +-++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456899999963 2368999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEEEccc
Q 025814 210 IKLRKSKW 217 (247)
Q Consensus 210 l~V~~a~~ 217 (247)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=8.3e-17 Score=126.45 Aligned_cols=83 Identities=18% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeC---CEeEE
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG--KTKGYGFISFANPSDIAAALKEMNGKYVG---NRPIK 211 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg--~~kg~~FV~f~~~~~a~~Al~~l~g~~i~---g~~l~ 211 (247)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.+| .++|||||+|.+.++|++|++.|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45699999999999999999999999999999999998877 89999999999999999999999998775 67888
Q ss_pred EEEccccc
Q 025814 212 LRKSKWQE 219 (247)
Q Consensus 212 V~~a~~k~ 219 (247)
+..+....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776543
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=115.98 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
..++|||+|||+++++++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++++.. +..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4569999999999999999999999999999999765 689999999999999764321 345699999999998
Q ss_pred cccc
Q 025814 217 WQER 220 (247)
Q Consensus 217 ~k~~ 220 (247)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=8.4e-17 Score=136.54 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
....++|||+||++++++++|+ ++|+.||.|.+|++++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4556799999999999999976 8999999999999876 68899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025814 211 KLRKSKWQE 219 (247)
Q Consensus 211 ~V~~a~~k~ 219 (247)
+|.+++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4.5e-17 Score=127.25 Aligned_cols=79 Identities=24% Similarity=0.562 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||+++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|+.. +..++|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999974 6789999999988865
Q ss_pred c
Q 025814 218 Q 218 (247)
Q Consensus 218 k 218 (247)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.8e-16 Score=127.83 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccc
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKW 217 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 217 (247)
.++|||+|||+++++++|+++|+.||.|.+|+|.++. +|.++|||||+|.+.++|++|+..+ +..++|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999999986 6999999999999999999999665 4599999999988653
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=3.1e-16 Score=129.87 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 135 PENDYRLFCGDLGNEV---------NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~---------~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
....++||||||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456799999999998 79999999999999999999864 78999999999999999999999999
Q ss_pred ------------CCEeEEEEEccccc
Q 025814 206 ------------GNRPIKLRKSKWQE 219 (247)
Q Consensus 206 ------------~g~~l~V~~a~~k~ 219 (247)
.|+.|.|++|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=5.4e-16 Score=128.01 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 135 PENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 135 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
....++|||+|||+ ++++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567999999999 99999999999999999999999885 7899999999999999999999999999999999
Q ss_pred Ecccc
Q 025814 214 KSKWQ 218 (247)
Q Consensus 214 ~a~~k 218 (247)
+++.+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99755
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-15 Score=109.90 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCc-----------HHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 025814 135 PENDYRLFCGDLGNEVN-----------DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK 203 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~-----------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~ 203 (247)
+...++|+|.||-.... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45567999999944432 5899999999999999955 553 37999999999999999999999999
Q ss_pred eeCCEeEEEEEcccccc
Q 025814 204 YVGNRPIKLRKSKWQER 220 (247)
Q Consensus 204 ~i~g~~l~V~~a~~k~~ 220 (247)
.|+|+.|+|.++.++.+
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999987653
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.8e-16 Score=124.93 Aligned_cols=83 Identities=31% Similarity=0.462 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|..||.+.. .++++..+|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 556789999999999999999999999998766 34455568999999999999999999999 6999999999999999
Q ss_pred ccccc
Q 025814 215 SKWQE 219 (247)
Q Consensus 215 a~~k~ 219 (247)
+..+.
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=6.7e-16 Score=124.20 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=71.5
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 138 DYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 138 ~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
.++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 45899999999 99999999999999999999998874 7899999999999999999999999999999999997
Q ss_pred cc
Q 025814 217 WQ 218 (247)
Q Consensus 217 ~k 218 (247)
.+
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=6e-16 Score=112.44 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHHHh------------ccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 143 CGDLGNEVNDDVLSKAF------------SRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 143 V~nLp~~~~e~~L~~~F------------~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
+.||++.+++++|+++| ++||.|.+|.|+++. +|.++|||||+|.+.++|.+|+..|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887776 999999999999986 58999999999999999999999999999999999
Q ss_pred EEEEc
Q 025814 211 KLRKS 215 (247)
Q Consensus 211 ~V~~a 215 (247)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=5.2e-15 Score=107.63 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCcEEEEcCC--CCCCc--------HHHHHHHhccCCCeeEEEEEecCCC--CCcceEEEEEecCHHHHHHHHHHhCCce
Q 025814 137 NDYRLFCGDL--GNEVN--------DDVLSKAFSRFPSFNMAKVVRDKRT--GKTKGYGFISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 137 ~~~~lfV~nL--p~~~~--------e~~L~~~F~~~G~i~~v~i~~~~~t--g~~kg~~FV~f~~~~~a~~Al~~l~g~~ 204 (247)
+.+.|.|.|+ +.++. +++|++.|++||.|.+|.|++++.+ +.++||+||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457899998 33333 3689999999999999999998754 4689999999999999999999999999
Q ss_pred eCCEeEEEEEccc
Q 025814 205 VGNRPIKLRKSKW 217 (247)
Q Consensus 205 i~g~~l~V~~a~~ 217 (247)
++||.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=6.1e-15 Score=124.06 Aligned_cols=78 Identities=24% Similarity=0.520 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEE
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRK 214 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 214 (247)
....++|||+|||+++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..|||..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 455679999999999999999999999999999999654 68999999999999999999999999999999999
Q ss_pred cccc
Q 025814 215 SKWQ 218 (247)
Q Consensus 215 a~~k 218 (247)
+...
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8753
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1.4e-14 Score=107.42 Aligned_cols=79 Identities=13% Similarity=0.257 Sum_probs=69.4
Q ss_pred CcEEEEcCCCC--C---CcHHHHHHHhccCCCeeEEEEEecCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCCE
Q 025814 138 DYRLFCGDLGN--E---VNDDVLSKAFSRFPSFNMAKVVRDKR----TGKTKGYGFISFANPSDIAAALKEMNGKYVGNR 208 (247)
Q Consensus 138 ~~~lfV~nLp~--~---~~e~~L~~~F~~~G~i~~v~i~~~~~----tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~ 208 (247)
.++|+|.|+-. + --+++|++.|++||.|.+|.|++++. ++.++||+||+|.+.++|.+|++.|||..++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 44899999832 1 23689999999999999999999864 467889999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025814 209 PIKLRKSK 216 (247)
Q Consensus 209 ~l~V~~a~ 216 (247)
.|+|.+..
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99999975
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.4e-14 Score=113.42 Aligned_cols=75 Identities=15% Similarity=0.372 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRF----P-------SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
+.++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 34699999999999999999999999 6 66666664 34789999999999999999 9999999
Q ss_pred CCEeEEEEEcccc
Q 025814 206 GNRPIKLRKSKWQ 218 (247)
Q Consensus 206 ~g~~l~V~~a~~k 218 (247)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=1.5e-14 Score=115.97 Aligned_cols=74 Identities=15% Similarity=0.385 Sum_probs=65.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRF----P-------SFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
.++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|++|+ .|||..|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4699999999999999999999999 4 4555544 456899999999999999999 89999999
Q ss_pred CEeEEEEEcccc
Q 025814 207 NRPIKLRKSKWQ 218 (247)
Q Consensus 207 g~~l~V~~a~~k 218 (247)
|+.|+|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999988754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=97.13 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEccccc
Q 025814 148 NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQE 219 (247)
Q Consensus 148 ~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~k~ 219 (247)
..+++++|+++|++||.|.+|.|+ +.++|||||+|.+.++|+.|++.+++ +.|+.|+|.+++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 468999999999999999999987 46799999999999999999988555 679999999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.3e-13 Score=119.90 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=64.7
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CE-
Q 025814 135 PENDYRLFCGD--LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG---NR- 208 (247)
Q Consensus 135 ~~~~~~lfV~n--Lp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~---g~- 208 (247)
.....+||||| |++.+++++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45566999999 588999999999999999999887643 4799999999999999999999999872 44
Q ss_pred -eEEEEEcc
Q 025814 209 -PIKLRKSK 216 (247)
Q Consensus 209 -~l~V~~a~ 216 (247)
.|.|.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777763
No 204
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.5e-13 Score=91.97 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCCcEEEEcCCC----CCCcH----HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 135 PENDYRLFCGDLG----NEVND----DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 135 ~~~~~~lfV~nLp----~~~~e----~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
++++.||+|..++ ..+-+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||+ |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 5566799998776 23333 5788999999999999999883 8999999999999997 9999999
Q ss_pred CEeEEEEEccc
Q 025814 207 NRPIKLRKSKW 217 (247)
Q Consensus 207 g~~l~V~~a~~ 217 (247)
||.|+|+++++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999874
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=6.2e-13 Score=97.92 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCC----------cHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 025814 138 DYRLFCGDLGNEV----------NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN 207 (247)
Q Consensus 138 ~~~lfV~nLp~~~----------~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g 207 (247)
.+.|.|.|+=..- -+++|++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|++.|||..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3467777762211 235889999999999999987663 48999999999999999999999999999
Q ss_pred EeEEEEEcc
Q 025814 208 RPIKLRKSK 216 (247)
Q Consensus 208 ~~l~V~~a~ 216 (247)
|.|+|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999985
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.1e-12 Score=93.97 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeCCEeE
Q 025814 135 PENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFAN-PSDIAAALKEMN--GKYVGNRPI 210 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~-~~~a~~Al~~l~--g~~i~g~~l 210 (247)
-..++.|||+||++. ++.++|+++|+.||.|..|.++++.. .|||.|.+ .++|..|++.|| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456779999999999 99999999999999999999998854 59999999 899999999995 778999999
Q ss_pred EEEEccccccccH
Q 025814 211 KLRKSKWQERTDF 223 (247)
Q Consensus 211 ~V~~a~~k~~~~~ 223 (247)
+++.-.......+
T Consensus 89 ~~evL~GeeE~~y 101 (121)
T 1owx_A 89 TWEVLEGEVEKEA 101 (121)
T ss_dssp EEEECCHHHHHHH
T ss_pred EEEECCCHHHHHH
Confidence 9998877665443
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.4e-11 Score=86.25 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCC------CcH---HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 025814 135 PENDYRLFCGDLGNE------VND---DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYV 205 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~------~~e---~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i 205 (247)
.+++.||+|..++.. ..+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 667779999988642 332 4688999999999999999984 9999999999999997 999999
Q ss_pred CCEeEEEEEcc
Q 025814 206 GNRPIKLRKSK 216 (247)
Q Consensus 206 ~g~~l~V~~a~ 216 (247)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=1.8e-10 Score=94.31 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=60.9
Q ss_pred CcHHHHHHHhccCCCeeEEEEEecC----CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEEEcc
Q 025814 150 VNDDVLSKAFSRFPSFNMAKVVRDK----RTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSK 216 (247)
Q Consensus 150 ~~e~~L~~~F~~~G~i~~v~i~~~~----~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 216 (247)
-.+++|.+.|++||.|.++.|.++. .+|.++|++||+|.+.++|.+|++.|||..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4568899999999999999998654 455899999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.5e-07 Score=67.26 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccC-----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeE
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRF-----PSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPI 210 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~-----G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l 210 (247)
++.++|-+-|||..+++..|+.+++.+ |.|..+.++.|. |-|+|+|.+...|-+|.-.|||.+|.||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 345689999999999999999999999 999999998884 479999999999999998999999999999
Q ss_pred EEEEc
Q 025814 211 KLRKS 215 (247)
Q Consensus 211 ~V~~a 215 (247)
++.--
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99654
No 210
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.96 E-value=1.1e-06 Score=64.03 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=39.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+.. .+++++||+|++.++|.+|+. +..++++.+.+.....+....... ........+|||
T Consensus 30 G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~-----~~~~~~~~~lyv 102 (115)
T 4f25_A 30 GNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-----GARAKEFTNVYI 102 (115)
T ss_dssp SCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------
T ss_pred CCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccccc-----ccccCCCCceEe
Confidence 6666655555433 368999999999999988874 567889988887766554332211 111334457999
Q ss_pred cCCCCCCcHHH
Q 025814 144 GDLGNEVNDDV 154 (247)
Q Consensus 144 ~nLp~~~~e~~ 154 (247)
+||++++|++.
T Consensus 103 ~Nl~~~~T~~a 113 (115)
T 4f25_A 103 KNFGPGSTRAA 113 (115)
T ss_dssp -----------
T ss_pred CCCCCCccccc
Confidence 99999999863
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=5.9e-05 Score=53.50 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=61.0
Q ss_pred cEEEEcCCCCCC-cH----HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 139 YRLFCGDLGNEV-ND----DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 139 ~~lfV~nLp~~~-~e----~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
++|+|.||+.++ .. +.++.+|..|+.+......+.= + =..|.|.+.++|.+|-..|++..++|+.|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 489999998876 22 5678999999999887776541 1 35799999999999999999999999999999
Q ss_pred Eccc
Q 025814 214 KSKW 217 (247)
Q Consensus 214 ~a~~ 217 (247)
++..
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9873
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00026 Score=49.44 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 025814 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN 201 (247)
Q Consensus 136 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~ 201 (247)
.....++| ++|.++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+..++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 33445666 999999999999999999954 57777773 89999999999999998663
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.00036 Score=48.48 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=56.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCc--ceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT--KGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~--kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
+|-|++||+.++++++.+.++..+.+.....+..+.+.+. -+-|||.|.+.+++..-.+.++|..+.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 7999999999999999999999988777777666544332 256899999999999999999999763
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0006 Score=48.14 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcc-----CCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEE
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSR-----FPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL 212 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~-----~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V 212 (247)
+.+|.|.|||..++++.|.-+|+. -|.|.+|.... +-|+|+|.+.+.+++.|+ -..+.|+|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 458999999999999999999976 25777777643 368999999999999984 3466788888998
Q ss_pred EEccc
Q 025814 213 RKSKW 217 (247)
Q Consensus 213 ~~a~~ 217 (247)
.-.-.
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 66443
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.00019 Score=50.27 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=46.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMN 201 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~ 201 (247)
.++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 4567888773 89999999999999998765
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.0019 Score=46.96 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-EeEEEEEc
Q 025814 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGN-RPIKLRKS 215 (247)
Q Consensus 137 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g-~~l~V~~a 215 (247)
+.+.|.|.+.+... -+.+.+.|++||.|.+..... + ..+-.|.|.+..+|++|| ..||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 35578898999985 556778899999999877621 1 238899999999999999 569999984 66777664
No 217
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.97 E-value=0.00072 Score=47.43 Aligned_cols=63 Identities=14% Similarity=-0.014 Sum_probs=45.1
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCC
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGN 148 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~ 148 (247)
.++++||+|++.++|.+|+. +..+.++.+.+..+..+.........+.. .....+||||||+.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~---~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPAR---RKLLEVLFNGPLEH 101 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCS---CCCCSCCCSCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCcc---ccCCCceecCCCCC
Confidence 68999999999999888875 56788999988887766544333222211 23355899999963
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.62 E-value=0.0017 Score=49.35 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=29.9
Q ss_pred EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 025814 167 MAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGK 203 (247)
Q Consensus 167 ~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~ 203 (247)
.++|+++. ..++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 56788874 468999999999999999999888754
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.54 E-value=0.0031 Score=44.12 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=48.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCc--ceEEEEEecCHHHHHHHHHHhCCceeC
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT--KGYGFISFANPSDIAAALKEMNGKYVG 206 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~--kg~~FV~f~~~~~a~~Al~~l~g~~i~ 206 (247)
+|-|++||+.+||+++.+.++..-.+.....+..+.+.+. -+-|||.|.+.+++..-.+.++|..+.
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 7999999999999998888877655432222222222111 134899999999999999999999663
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.25 E-value=0.0051 Score=45.35 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=53.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEEec------------CCCC-CcceEEEEEecCHHHHHHHHHHhCCce
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVVRD------------KRTG-KTKGYGFISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~i~~~------------~~tg-~~kg~~FV~f~~~~~a~~Al~~l~g~~ 204 (247)
..|.|-+.|.+.. ..+.+.|++||.|.+ +.+.++ +..+ ...++-.|.|++..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 3677888977655 456778999999865 221110 0001 12346789999999999999 679999
Q ss_pred eCCEeEEEEEcc
Q 025814 205 VGNRPIKLRKSK 216 (247)
Q Consensus 205 i~g~~l~V~~a~ 216 (247)
|+|..|-|..-+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887654
No 221
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.19 E-value=0.0043 Score=42.73 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=44.9
Q ss_pred CccccccccchhhhcCCCceeeCccCHHHHHHHHhcC----ccchhhhhhcccccccccCC
Q 025814 68 PVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS----DIEHKAETKKKSIPRKAAGQ 124 (247)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~----~~~~~~~~~~~~~~r~~~~~ 124 (247)
.+..+....+..+..++|++||+|++.++|.+|++.. .+.++.+.+..+.++.....
T Consensus 28 ~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~~ 88 (91)
T 2lxi_A 28 QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINE 88 (91)
T ss_dssp CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCCSC
T ss_pred EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCCCC
Confidence 4666666677778889999999999999999998642 57899998888776655443
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.14 E-value=0.003 Score=47.65 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=37.8
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEeEEEEEcccc
Q 025814 176 TGKTKGYGFISFANPSDIAAALKEM-NGKYVGNRPIKLRKSKWQ 218 (247)
Q Consensus 176 tg~~kg~~FV~f~~~~~a~~Al~~l-~g~~i~g~~l~V~~a~~k 218 (247)
....+|+++|+|.+.++|++|++.| ||..++| .|.+.++..+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999887654
No 223
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.12 E-value=0.0012 Score=47.40 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=53.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEE
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV 143 (247)
|.+..+....+ ...++++||+|.+.++|..|+. +..+.++.+.+..+..+...
T Consensus 33 G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--------------------- 88 (115)
T 3lqv_A 33 GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--------------------- 88 (115)
T ss_dssp SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT---------------------
T ss_pred CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh---------------------
Confidence 55544433332 2348999999999999888865 56788888888776554332
Q ss_pred cCCCCCCcHHHHHHHhccCCC
Q 025814 144 GDLGNEVNDDVLSKAFSRFPS 164 (247)
Q Consensus 144 ~nLp~~~~e~~L~~~F~~~G~ 164 (247)
.++....++++|+++|++||.
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 456778899999999999984
No 224
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.09 E-value=0.0025 Score=57.22 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALK 198 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~ 198 (247)
.|||. .+..+++.+|.++|++||.|.++....++ | .|+.|+|.+.+++..++.
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 79997 79999999999999999999999887653 2 599999999999887763
No 225
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=93.98 E-value=0.054 Score=38.82 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
|.+..+....+. ....++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 32 G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 32 GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 666666555555 67789999999999999999886 4578898888887765543
No 226
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.97 E-value=0.073 Score=36.31 Aligned_cols=56 Identities=7% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCcccc-ccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccccc
Q 025814 67 APVYSL-PQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 67 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~ 122 (247)
+.+..+ ....+......++++||+|++.++|.+|+. +..+.++.+.+..+..+...
T Consensus 30 G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 30 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 666666 566666677889999999999999999987 34678888888777665443
No 227
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=93.92 E-value=0.033 Score=39.44 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPRK 120 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r~ 120 (247)
+|.+..+....+..+..++|++||+|++.+++.+|+... .++++.+.+..+..+.
T Consensus 49 ~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 49 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCC
T ss_pred cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCC
Confidence 366767666666667888999999999999999999754 5677777776665443
No 228
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=93.92 E-value=0.027 Score=38.29 Aligned_cols=52 Identities=6% Similarity=0.022 Sum_probs=38.1
Q ss_pred CccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 68 PVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
.+..+....+..+..++|++||+|++.+++.+|+. +..+.++.+.+..+.+.
T Consensus 29 ~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 29 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 56666666666778889999999999999888874 56788888887665543
No 229
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.79 E-value=0.039 Score=38.89 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=42.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---------cCccchhhhhhccccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---------SSDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---------~~~~~~~~~~~~~~~~r~~~ 122 (247)
+.+..+....+..+...++++||+|++.++|.+|+. ...+.++.+.+..+..+...
T Consensus 40 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 40 GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 666666666666667789999999999999999886 44678888888777665443
No 230
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.73 E-value=0.061 Score=37.22 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=43.0
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++.+..+....+......++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 36 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 36 FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 3666666666666677889999999999999999874 4578888888877665543
No 231
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.57 E-value=0.047 Score=37.65 Aligned_cols=55 Identities=27% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+..+..+++++||+|++.+++.+|++ ...+.++.+.+..+..+..
T Consensus 35 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 35 GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 666666666666677789999999999999999986 3467888888877765544
No 232
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.42 E-value=0.068 Score=38.01 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=44.9
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhccccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~ 122 (247)
++.+..+....+..+...++++||+|++.+++.+|+.. ..+.++.+.+..+..+...
T Consensus 51 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 51 WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccC
Confidence 46777776666667778899999999999999999976 3578888888777666543
No 233
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=93.40 E-value=0.024 Score=39.51 Aligned_cols=54 Identities=4% Similarity=-0.092 Sum_probs=41.3
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccch-hhhhhcccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEH-KAETKKKSIPR 119 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~-~~~~~~~~~~r 119 (247)
+|.+..+....+..+..++|++||+|++.++|.+|+. +..+.+ +.+.+..+.++
T Consensus 36 ~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 36 AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 3777777777777778899999999999998888874 457777 77766655443
No 234
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=93.36 E-value=0.019 Score=40.04 Aligned_cols=52 Identities=8% Similarity=-0.040 Sum_probs=40.1
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
+|.+..+....+..+..++|++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 43 ~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 43 IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3777777666777778889999999999999988875 467788877776543
No 235
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.25 E-value=0.049 Score=37.50 Aligned_cols=55 Identities=15% Similarity=-0.017 Sum_probs=42.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+......++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 33 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 33 GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 666666666666677889999999999999999884 4467888888877766544
No 236
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.09 E-value=0.023 Score=40.55 Aligned_cols=53 Identities=6% Similarity=-0.025 Sum_probs=42.0
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
.+|.+..+....+..+..++|++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 29 ~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 29 KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34778777777777788899999999999999998875 557788877765543
No 237
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.99 E-value=0.029 Score=38.97 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=35.8
Q ss_pred ccccccccchhhhcCCCceeeCccCHHHHHHHHhc---C----ccchhhhhhccc
Q 025814 69 VYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---S----DIEHKAETKKKS 116 (247)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~----~~~~~~~~~~~~ 116 (247)
+..+....+..+..+||++||+|++.++|.+|+.. . .++++.+.+..+
T Consensus 38 v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 38 VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp GGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred EEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 45666667777889999999999999888888763 2 266776665543
No 238
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.95 E-value=0.062 Score=36.62 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=44.6
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccC
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAG 123 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~ 123 (247)
++.+..+....+..+..+++++||+|++.+++.+|+. +..+.++.+.+..+..+...+
T Consensus 29 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 29 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 3666666666666677889999999999999988875 467889998888877665443
No 239
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=92.91 E-value=0.062 Score=34.87 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=34.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETK 113 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~ 113 (247)
|.+..+....+.....+++++||+|++.+++.+|+.. ..++++.+.+
T Consensus 24 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 72 (75)
T 2mss_A 24 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 72 (75)
T ss_dssp SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEE
T ss_pred CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEE
Confidence 6666666666666778899999999999999999863 3455555443
No 240
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=92.31 E-value=0.067 Score=36.63 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=40.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
|.+..+....+.....+++++||+|++.++|.+|+. +..+.++.+.+..+..+.
T Consensus 27 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 27 GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 666666666666667889999999999999988874 457888888777665443
No 241
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.26 E-value=0.12 Score=36.00 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=41.5
Q ss_pred CCccccccccc-hhhhcCCCceeeCccCHHHHHHHHh----cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQ-AQQLFQRDAQTITPEALESVKAALA----SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~a~~al~----~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+ ......++++||+|++.++|.+|+. ...+.++.+.+..+..+..
T Consensus 40 G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 40 GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 66666655555 4567789999999999999988875 4578888888877765543
No 242
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.13 E-value=0.095 Score=36.21 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=40.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
+.+..+....+......++++||+|++.++|.+|+. ...+.++.+.+..+..+.
T Consensus 37 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 37 GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 555555555555566789999999999999988874 567888888887765544
No 243
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=92.11 E-value=0.077 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=34.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETK 113 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~ 113 (247)
|.+..+....+.....+++++||+|++.+++.+|+... .+.++.+.+
T Consensus 24 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v 72 (75)
T 1iqt_A 24 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 72 (75)
T ss_dssp SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 55555555555556778999999999999999999753 455555444
No 244
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=92.09 E-value=0.05 Score=38.68 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=41.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+......++++||+|++.+++.+|+. ...+.++.+.+..+..+..
T Consensus 50 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 50 GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 566666555655567778999999999999998884 5678888888877665543
No 245
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.08 E-value=0.13 Score=35.70 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=42.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+......++++||+|++.+++.+|+.. ..+.++.+.+..+..+..
T Consensus 40 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 40 GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 6666666666666777899999999999999999863 468888888877665543
No 246
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=92.07 E-value=0.041 Score=36.45 Aligned_cols=54 Identities=9% Similarity=-0.003 Sum_probs=40.5
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+|.+..+....+.....+++++||+|++.++|.+|+. +..+.++.+.+..+.++
T Consensus 25 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 25 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 3666666666666677789999999999999988875 45778887777665543
No 247
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.00 E-value=0.4 Score=35.02 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=38.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
|.+..+....+..+...++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 67 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 67 GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 344444444444455668999999999999999886 3467888888877665543
No 248
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.98 E-value=0.086 Score=36.57 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=41.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cc-cchhhhhhcccccccccC
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SD-IEHKAETKKKSIPRKAAG 123 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~-~~~~~~~~~~~~~r~~~~ 123 (247)
+.+..+....+. ...+++++||+|++.++|.+|+.. .. +.++.+.+..+..+....
T Consensus 35 G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 35 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 556565555555 666899999999999999999863 45 888888888876655443
No 249
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.85 E-value=0.041 Score=38.01 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=38.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
+.+..+....+. ....++++||+|++.++|.+|+. +..+.++.+.+..+.++.
T Consensus 42 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 42 GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 556555555544 56678999999999999999884 456788888777665543
No 250
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.81 E-value=0.09 Score=36.89 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=37.4
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKK 115 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~ 115 (247)
+|.+..+....+.. ..++|++||+|++.++|..|+.. ..+.++.+.+..
T Consensus 35 ~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 35 KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 47777766666655 78899999999999999999973 356677666543
No 251
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.77 E-value=0.076 Score=36.84 Aligned_cols=56 Identities=11% Similarity=0.021 Sum_probs=43.1
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++.+..+....+.....+++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 39 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 39 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 4777776666666667789999999999999999986 3467888888877665544
No 252
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=91.75 E-value=0.11 Score=36.88 Aligned_cols=56 Identities=4% Similarity=-0.109 Sum_probs=42.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~ 122 (247)
+.+..+....+......++++||+|++.++|.+|+. +..+.++.+.+..+..+...
T Consensus 40 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 40 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 666666666655667778999999999999999885 45788888888877665443
No 253
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.68 E-value=0.46 Score=43.14 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 025814 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNG 202 (247)
Q Consensus 138 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g 202 (247)
...++|+ ++..+...+|.+.|+.||.+ +|+++.+ | .+||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHHh
Confidence 4467776 88899999999999999954 5666655 2 799999999999999998853
No 254
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.63 E-value=0.15 Score=35.87 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=39.4
Q ss_pred ccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccccc
Q 025814 71 SLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~ 122 (247)
.+....+..+...++++||+|++.++|.+|+. +..+.++.+.+..+..+...
T Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 34555555677889999999999999998875 45788888888777665443
No 255
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=91.23 E-value=0.12 Score=37.78 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=40.5
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+|.+..+....+......++++||+|++.++|.+|+. +..+.++.+.+..+..+
T Consensus 70 ~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 70 YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 3666666666666667789999999999999988876 45678887777665443
No 256
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=91.16 E-value=0.072 Score=35.38 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=35.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKK 114 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~ 114 (247)
|.+..+....+......++++||+|++.++|..|+. +..+.++.+.+.
T Consensus 32 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 32 GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 666666666666677789999999999999998874 456666665553
No 257
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.11 E-value=0.09 Score=36.43 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=41.4
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
++.+..+....+..+..+++++||+|++.++|.+|+. +..+.++.+.+..+....
T Consensus 37 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 37 YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 3666666666666667789999999998887777765 567888888887766543
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=91.10 E-value=0.22 Score=36.22 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=41.6
Q ss_pred CCccc--cccccchhhhcCCCceeeCccCHHHHHHHH---hcC----ccchhhhhhcccccccc
Q 025814 67 APVYS--LPQYHQAQQLFQRDAQTITPEALESVKAAL---ASS----DIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~a~~al---~~~----~~~~~~~~~~~~~~r~~ 121 (247)
|.+.. +....+..+..++|++||+|++. ++.+|+ ++. .+.++.+.+..+..+..
T Consensus 48 G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 48 AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 66644 56667777888999999999998 777775 456 88999999887766543
No 259
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.03 E-value=0.06 Score=37.38 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=41.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-Cccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+..+..+++++||+|++.+++.+|+.. +.+.++.+.+..+..+..
T Consensus 40 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 40 GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCC
T ss_pred CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCc
Confidence 5666665555556677889999999999999999984 357788887777665544
No 260
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.98 E-value=0.11 Score=33.63 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=35.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETK 113 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~ 113 (247)
|.+..+....+.....+++++||+|++.+++.+|+... .++++.+.+
T Consensus 25 G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 73 (77)
T 1uaw_A 25 GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 73 (77)
T ss_dssp SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence 66666666666666788999999999999999998754 455555544
No 261
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=90.98 E-value=0.073 Score=37.59 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=39.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+.....+++++||+|++.++|..|+. +..+.++.+.+..+..+
T Consensus 51 G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 51 GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 666666666666667789999999999999998875 55778888777665443
No 262
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=90.88 E-value=0.15 Score=35.17 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=36.6
Q ss_pred CCccccccccch-hhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQA-QQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~ 118 (247)
| +..+....+. ....++|++||+|++.+++.+|+. +..+.++.+.+..+..
T Consensus 44 G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 44 N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 5 5555555554 467789999999999999999983 3467777777665543
No 263
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=90.86 E-value=0.14 Score=36.84 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+..+..+++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 47 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 47 GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 666666666666677889999999999999988874 5678888888877765543
No 264
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.84 E-value=0.047 Score=36.61 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=36.0
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhh
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETK 113 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~ 113 (247)
+|.+..+....+..+..+++++||+|++.+++.+|+... .++++.+.+
T Consensus 35 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 35 FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 367777666666667788999999999999999999753 355555444
No 265
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=90.53 E-value=0.19 Score=36.98 Aligned_cols=53 Identities=6% Similarity=-0.085 Sum_probs=40.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+.+..+....+......++++||+|++.+++.+|+. +..+.++.+.+..+...
T Consensus 72 G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 72 GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 666666565555667789999999999999999985 45688888877766544
No 266
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.49 E-value=0.15 Score=35.34 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=40.3
Q ss_pred CCccccccccchhh-hcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQ-LFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~r~~ 121 (247)
+ +..+....+..+ ..+++++||+|++.+++.+|+. ...+.++.+.+..+..+..
T Consensus 40 G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 40 N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCC
Confidence 5 555555555554 7789999999999999999983 3467888888877766544
No 267
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.47 E-value=0.32 Score=34.35 Aligned_cols=53 Identities=9% Similarity=-0.047 Sum_probs=41.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~~r 119 (247)
+.+..+....+..+..+++++||+|++.++|.+|+... .+.++.+.+..+...
T Consensus 42 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 42 GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 96 (116)
T ss_dssp SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence 66666666666667788999999999999999999753 577777777766543
No 268
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=90.22 E-value=0.12 Score=36.27 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+.....+++++||+|++.+++..|+. +..+.++.+.+..+..+
T Consensus 51 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 51 GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 666666565666667789999999999999988875 45678887777665443
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.06 E-value=0.061 Score=37.48 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=41.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+.....+++++||+|++.+++.+|+.. ..+.++.+.+..+..+..
T Consensus 41 G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 41 GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSC
T ss_pred CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCC
Confidence 6666666666656677889999999999999999864 467788888877665543
No 270
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=89.87 E-value=0.062 Score=40.82 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=38.8
Q ss_pred CccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccc
Q 025814 68 PVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSI 117 (247)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~ 117 (247)
.+..+....+..+..++|++||+|++.++|.+|+.. ..+.++.+.+..+.
T Consensus 83 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 83 DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 566666666667788899999999999999999864 56778777776554
No 271
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.80 E-value=0.14 Score=36.27 Aligned_cols=50 Identities=0% Similarity=-0.135 Sum_probs=35.6
Q ss_pred CCc-cccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcccc
Q 025814 67 APV-YSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~~~ 117 (247)
+.+ ..+....+. +...++++||+|++.++|.+||... .+.++.+.+..+.
T Consensus 40 g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 40 PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 555 445555555 6778999999999999999999753 4566665554443
No 272
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=89.74 E-value=0.24 Score=34.29 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=39.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCcc---chhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDI---EHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~---~~~~~~~~~~~~r~ 120 (247)
+.+..+....+..+..+++++||+|++.++|.+|+. +..+ .++.+.+..+..+.
T Consensus 38 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 38 GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 556566555555667789999999999999988876 3344 67877777765544
No 273
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.72 E-value=0.12 Score=35.05 Aligned_cols=49 Identities=6% Similarity=-0.023 Sum_probs=36.1
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKK 114 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~ 114 (247)
++.+..+....+......++++||+|++.+++.+|+.. ..+.++.+.+.
T Consensus 40 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 40 YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 36676666666666677899999999999999999853 35666655543
No 274
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=89.55 E-value=0.2 Score=35.12 Aligned_cols=47 Identities=13% Similarity=0.013 Sum_probs=33.7
Q ss_pred ccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhccc
Q 025814 69 VYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKS 116 (247)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~ 116 (247)
+..+....+.. ..++|++||+|++.+++.+|+.. ..+.++.+.+..+
T Consensus 41 v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 41 ENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp TTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred cceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 55555555555 78899999999999999999873 3455665555443
No 275
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.50 E-value=0.14 Score=35.02 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=37.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~ 117 (247)
+.+..+....+..+...++++||+|++.+++.+|+.. ..+.++.+.+....
T Consensus 40 G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 40 QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5555554555555667789999999999999998853 46788877776544
No 276
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=89.26 E-value=0.079 Score=35.36 Aligned_cols=51 Identities=2% Similarity=-0.145 Sum_probs=37.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
|.+..+....+.....+++++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 31 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 31 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 556565555555567778999999999999998876 456777777665543
No 277
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.23 E-value=0.14 Score=35.40 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
|.+..+....+.....+++++||+|++.++|.+|+. +..+.++.+.+..+..
T Consensus 33 G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 33 GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 666666666666677789999999999999999886 3466777766655543
No 278
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=89.22 E-value=0.14 Score=35.23 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=31.7
Q ss_pred cccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhc
Q 025814 72 LPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKK 114 (247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~ 114 (247)
+....+..+..++|++||+|++.+++.+|+. +..+.++.+.+.
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 96 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVS 96 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 5455555667789999999999999888875 456667666554
No 279
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.19 E-value=0.31 Score=35.23 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-----Cccchhhhhhcccccccc
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r~~ 121 (247)
++|.+..+.... .|+++||+|++.++|.+|+.. ..+.++.+.+..+..+..
T Consensus 54 ~fG~V~~v~i~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 54 PFGKVTNLLMLK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp TTSCCCEEEEEG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred hcCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 346555544332 389999999999999999863 358889888877765443
No 280
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.1 Score=36.37 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=38.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
|.+..+....+..+..+++++||+|++.++|.+|+. +..+.++.+.+..+..
T Consensus 48 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 48 GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 566666555566667779999999999999888875 4567787777765543
No 281
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.90 E-value=0.3 Score=33.68 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=38.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+... .++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 40 G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 40 GKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp SCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 55555554444332 79999999999999998875 4578888888877766544
No 282
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.83 E-value=0.75 Score=30.02 Aligned_cols=68 Identities=12% Similarity=0.277 Sum_probs=42.6
Q ss_pred EEEEc-CCCCCCcHHHHHHHhccCCCe-----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEeEEEE
Q 025814 140 RLFCG-DLGNEVNDDVLSKAFSRFPSF-----NMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLR 213 (247)
Q Consensus 140 ~lfV~-nLp~~~~e~~L~~~F~~~G~i-----~~v~i~~~~~tg~~kg~~FV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 213 (247)
+|||. +--..+...+|..++..-+.| -.+.|..+ |.||+... +.+..++..|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 46664 223456677788887755543 44555333 88998865 56778899999999999999998
Q ss_pred Ecc
Q 025814 214 KSK 216 (247)
Q Consensus 214 ~a~ 216 (247)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 283
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.65 E-value=0.2 Score=34.83 Aligned_cols=50 Identities=18% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CCccc-cccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccc
Q 025814 67 APVYS-LPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~ 117 (247)
+.+.. +....+ ....++|++||+|++.+++.+|+.. ..+.++.+.+....
T Consensus 40 G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 40 EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 54443 333344 5677899999999999999999975 35677777665544
No 284
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=88.59 E-value=0.18 Score=36.10 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=38.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~ 118 (247)
|.+..+....+.....+++++||+|++.+++..|+. +..+.++.+.+.....
T Consensus 61 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 61 GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 556666555555667779999999999999999983 2356777777765543
No 285
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.40 E-value=0.15 Score=34.33 Aligned_cols=41 Identities=12% Similarity=-0.063 Sum_probs=31.6
Q ss_pred hhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccccc
Q 025814 79 QQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPR 119 (247)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r 119 (247)
.....++++||+|++.+++.+|+.. ..+.++.+.+..+..+
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 45 AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 4556789999999999999999872 3577777777665544
No 286
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.39 E-value=0.23 Score=32.91 Aligned_cols=48 Identities=6% Similarity=0.040 Sum_probs=35.4
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhh
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETK 113 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~ 113 (247)
++.+..+....+.....+++++||+|++.+++..|+. +..+.++.+++
T Consensus 29 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 29 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 4667666666666677889999999999999988876 34566655544
No 287
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=88.30 E-value=0.19 Score=33.41 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=36.0
Q ss_pred CCccccccccchhhhc-CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLF-QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
|.+..+....+..+.. .++++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 29 G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 29 GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5555555544444434 79999999999999988875 456778777765543
No 288
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.26 E-value=0.36 Score=33.58 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=38.5
Q ss_pred ccccccc-cchhhhcCCCceeeCccCHHHHHHHHhc-----Cccchhhhhhcccccccc
Q 025814 69 VYSLPQY-HQAQQLFQRDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r~~ 121 (247)
+..+... .+..+..+++++||+|++.++|..|+.. ..+.++.+.+..+..+..
T Consensus 36 v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 36 VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 4444343 4445567899999999999999999863 357888888877765543
No 289
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.17 E-value=0.3 Score=33.69 Aligned_cols=54 Identities=7% Similarity=-0.046 Sum_probs=40.1
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++.+..+....+ ....++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 39 ~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 39 FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 366666555544 55678999999999999998875 4578888888877765544
No 290
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.95 E-value=0.13 Score=37.09 Aligned_cols=49 Identities=10% Similarity=-0.096 Sum_probs=33.8
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKK 114 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~ 114 (247)
++.+..+....+..+...++++||+|++.+++.+||.. ..+.++.+.+.
T Consensus 49 ~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 49 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 36555544444555677899999999999999999873 24555554443
No 291
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.94 E-value=0.28 Score=34.21 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=35.4
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-----Cccchhhhhhccccccc
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPRK 120 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r~ 120 (247)
++|.+..+.... .|+++||+|++.++|.+|+.. ..+.++.+.+..+..+.
T Consensus 38 ~fG~v~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 38 PFGKVTNILMLK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp TTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred hcCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 346655543322 389999999999999999873 24788888887765543
No 292
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.86 E-value=0.19 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred chhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccC
Q 025814 77 QAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAG 123 (247)
Q Consensus 77 ~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~ 123 (247)
+.....+++++||+|++.++|.+|+. +..+.++.+.+..+..+...+
T Consensus 47 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 47 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 96 (102)
T ss_dssp CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSS
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCC
Confidence 33455668999999999999988875 567889988888877665543
No 293
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.52 E-value=0.24 Score=34.51 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=34.8
Q ss_pred ccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccccc
Q 025814 71 SLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPR 119 (247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r 119 (247)
.+....+. ...+++++||+|++.+++.+||.. ..+.++.+.+......
T Consensus 43 ~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 43 RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 44444444 677899999999999999999954 3677777777655443
No 294
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.30 E-value=0.17 Score=34.55 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCccccccccchh---hhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccccc
Q 025814 67 APVYSLPQYHQAQ---QLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 67 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~ 121 (247)
+.+..+....+.. +...++++||+|++.++|.+|+.. ..+.++.+.+..+..+..
T Consensus 30 G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 30 GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 5555555544443 446789999999999999999863 467888888877665543
No 295
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.28 E-value=0.24 Score=35.15 Aligned_cols=45 Identities=4% Similarity=-0.120 Sum_probs=30.8
Q ss_pred ccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhccc
Q 025814 71 SLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKS 116 (247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~ 116 (247)
.+....+.. ..++|++||+|++.+++.+||.. ..+.++.+.+...
T Consensus 44 ~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 44 AVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp EEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 333333433 67899999999999999999853 3556665555443
No 296
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.23 E-value=0.14 Score=35.49 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=38.5
Q ss_pred ccccccccchhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccccccc
Q 025814 69 VYSLPQYHQAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~r~~ 121 (247)
+..+....+..+...++++||+|++.+++.+|+. +..+.++.+.+..+..+..
T Consensus 41 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 41 IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 4444455555566778999999999999999983 3467788888877665543
No 297
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.21 E-value=0.5 Score=33.72 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=36.0
Q ss_pred CCCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-----Cccchhhhhhcccccc
Q 025814 64 APVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPR 119 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r 119 (247)
.++|.+..+... ..++++||+|++.++|.+|+.. ..+.++.+.+..+..+
T Consensus 48 ~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 48 EPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp TTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 445666555432 3589999999999999999863 2478888888776544
No 298
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=87.18 E-value=0.22 Score=33.69 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=35.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~ 115 (247)
+.+..+....+......++++||+|++.+++.+|+. +..+.++.+.+..
T Consensus 40 G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 40 QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 555555555555666789999999999999888875 4567777666544
No 299
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.15 E-value=0.23 Score=33.91 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=36.1
Q ss_pred CCcc-ccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhh----hhhccc
Q 025814 67 APVY-SLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKA----ETKKKS 116 (247)
Q Consensus 67 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~----~~~~~~ 116 (247)
+.+. .+....+..+..+++++||+|++.+++.+|+.. ..+.++. +.+..+
T Consensus 34 G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 34 GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence 5555 655556666677889999999999999999863 3566666 555443
No 300
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=87.08 E-value=0.35 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=31.9
Q ss_pred chhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccccc
Q 025814 77 QAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 77 ~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~r 119 (247)
+.....+++++||+|++.+++.+|++ +..+.++.+.+..+..+
T Consensus 51 ~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 51 DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 33456679999999999999999886 33567777777665544
No 301
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=86.99 E-value=0.16 Score=33.92 Aligned_cols=51 Identities=16% Similarity=0.020 Sum_probs=37.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~ 117 (247)
|.+..+....+.....+++++||+|++.+++.+|+. +..+.++.+.+..+.
T Consensus 31 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 31 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 556666555555677789999999999999999983 345677776665543
No 302
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=86.96 E-value=0.16 Score=36.07 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=34.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKK 114 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~ 114 (247)
|.+..+....+......++++||+|++.+++.+|+.. ..+.++.+.+.
T Consensus 65 G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 65 GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 5666665555556677899999999999999998863 45666655543
No 303
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.89 E-value=0.31 Score=34.20 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=34.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
|.+..+....+.. ..++++||+|++.++|.+|+. +..+.++.+.+..+..
T Consensus 54 G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 54 GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5555554444432 379999999999888888875 4567888777766543
No 304
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.78 E-value=0.28 Score=33.51 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=34.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+... ++++||+|++.++|.+|+. +..+.++.+.+..+..+
T Consensus 38 G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 38 GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44444444333333 8899999999999888875 45788888888776544
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.69 E-value=0.31 Score=34.30 Aligned_cols=42 Identities=19% Similarity=-0.050 Sum_probs=33.6
Q ss_pred hhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 80 QLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
...+++++||+|++.++|..|+. +..+.++.+.+..+..+..
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 55678999999999999999885 4578888888877766544
No 306
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=86.67 E-value=0.22 Score=33.37 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+..+..+++++||+|++.+ +.+|+. +..+.++.+.+..+...
T Consensus 26 G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 26 GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 55656655666666788999999999999 888876 45678888877665543
No 307
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=86.62 E-value=0.27 Score=34.01 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=37.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccch---hhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEH---KAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~---~~~~~~~~~~r~ 120 (247)
+.+..+....+. ...+++++||+|++.++|.+|+. +..+.+ +.+.+..+..+.
T Consensus 40 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 40 GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 666665555544 46668999999999999999875 445666 777776665544
No 308
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=86.59 E-value=0.21 Score=36.48 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=34.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETK 113 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~ 113 (247)
|.+..+....+......++++||+|++.++|.+|+.. ..+.++.+.+
T Consensus 88 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 88 GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5565655555556677899999999999999999853 3455655544
No 309
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.46 E-value=0.19 Score=36.49 Aligned_cols=43 Identities=7% Similarity=-0.143 Sum_probs=29.9
Q ss_pred cccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhh
Q 025814 70 YSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETK 113 (247)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~ 113 (247)
..+....+ ....++|++||+|++.+++.+|+..+ .+.++.+++
T Consensus 55 ~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 55 EGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp GGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred ceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 34444444 46778999999999999999999642 344444443
No 310
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.41 E-value=0.48 Score=33.39 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCceeeCccCHHHHHHHHhc-----Cccchhhhhhcccccccc
Q 025814 84 RDAQTITPEALESVKAALAS-----SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~~-----~~~~~~~~~~~~~~~r~~ 121 (247)
|+++||+|++.++|.+|+.. ..+.++.+.+..+..+..
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 89999999999999999872 357888888877765543
No 311
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=85.85 E-value=0.42 Score=32.70 Aligned_cols=30 Identities=7% Similarity=0.013 Sum_probs=22.1
Q ss_pred cCCCceeeCccCHHHHHHHHhc---Cccchhhh
Q 025814 82 FQRDAQTITPEALESVKAALAS---SDIEHKAE 111 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~ 111 (247)
.++|++||+|.+.++|+.|+.. ..+.++.+
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3799999999988888877653 35555543
No 312
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.63 E-value=0.31 Score=34.27 Aligned_cols=57 Identities=5% Similarity=-0.025 Sum_probs=40.1
Q ss_pred CCCCCccccccccchh---hhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 64 APVAPVYSLPQYHQAQ---QLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 64 ~P~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
..++.+..+....+.. ....++++||+|++.++|.+|+. +..++++.+.+..+..+.
T Consensus 40 ~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 40 GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 3447776665554443 23456899999999999888876 457888888887766554
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=85.80 E-value=0.16 Score=36.09 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=38.4
Q ss_pred cccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccccc
Q 025814 72 LPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~ 122 (247)
+....+..+...++++||+|++.++|.+|+. +..+.++.+.+..+..+...
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4445555567789999999999988888875 45788888888877665443
No 314
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.50 E-value=0.87 Score=31.79 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=30.5
Q ss_pred CCCceeeCccCHHHHHHHHhc---C--ccchhhhhhccccccc
Q 025814 83 QRDAQTITPEALESVKAALAS---S--DIEHKAETKKKSIPRK 120 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~---~--~~~~~~~~~~~~~~r~ 120 (247)
.|+++||+|++.++|.+|+.. . .+.++.+.+..+..+.
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 489999999999999999863 2 4788888887776544
No 315
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.45 E-value=0.12 Score=36.62 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=38.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh--cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA--SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+..+...++++||+|++.+++.+|+. +..+.++.+.+..+..+
T Consensus 50 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 50 GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 666666666666667889999999998888888873 34677777777665544
No 316
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=85.30 E-value=0.48 Score=31.05 Aligned_cols=41 Identities=2% Similarity=-0.095 Sum_probs=29.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHK 109 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~ 109 (247)
|.+..+... ..+..++|++||+|++.++|.+|+.. ..+.++
T Consensus 32 G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 32 GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 555554433 24567899999999999999999864 345555
No 317
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=85.29 E-value=0.23 Score=36.79 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=30.9
Q ss_pred ccccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhh
Q 025814 69 VYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETK 113 (247)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~ 113 (247)
+..+....+.. ..++|++||+|++.+++.+|+.. ..+.++.+++
T Consensus 74 v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 74 AAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp STTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred eeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 45555555554 77899999999999999999872 2455554433
No 318
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=85.21 E-value=0.37 Score=34.51 Aligned_cols=51 Identities=4% Similarity=-0.083 Sum_probs=36.9
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
|.+..+....+. ....++++||+|++.+++.+|+. +..+.++.+.+..+..
T Consensus 60 G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 60 GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 555555555544 56689999999999999998876 4467777777766543
No 319
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.12 E-value=0.19 Score=33.98 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~ 115 (247)
+.+..+....+......++++||+|++.++|.+|+.. ..+.++.+.+..
T Consensus 40 G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 40 GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 6666665655555667789999999999999998863 456666655543
No 320
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=85.06 E-value=0.42 Score=35.47 Aligned_cols=48 Identities=8% Similarity=-0.024 Sum_probs=34.9
Q ss_pred ccccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccccc
Q 025814 71 SLPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSIPR 119 (247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r 119 (247)
.+....+.. ..+++++||+|++.+++.+||.. ..+.++.+.+.....+
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence 444444443 67899999999999999999843 3677777777665543
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=84.90 E-value=0.15 Score=41.24 Aligned_cols=50 Identities=4% Similarity=0.005 Sum_probs=39.8
Q ss_pred CccccccccchhhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccc
Q 025814 68 PVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSI 117 (247)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~ 117 (247)
.|..+.+..+..+..+++++||+|++.++|.+||.. ..+.++.+.+..+.
T Consensus 96 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 96 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 666776777777888899999999999999999863 57888887776554
No 322
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=84.89 E-value=0.49 Score=32.38 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=27.5
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
.+++++||+|++.+++..|+. +..+.++.+.+..+.
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999998888874 456777777665543
No 323
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.88 E-value=0.41 Score=32.95 Aligned_cols=52 Identities=15% Similarity=-0.005 Sum_probs=36.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
+.+..+....+.. ..++++||+|++.++|.+|+. +..+.++.+.+..+..+.
T Consensus 40 G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 40 GPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp SCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 4444444444322 258999999999999988876 456788888887766544
No 324
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.81 E-value=0.53 Score=32.75 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=31.1
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
.++++||+|++.++|.+|+. ...+.++.+.+..+..+..
T Consensus 60 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 68999999999999998874 4578888888877665443
No 325
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=84.75 E-value=0.38 Score=42.75 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=40.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
|.|..+.+..+..+...++++||+|++.++|..||. +..+.++.+.+..+..+.
T Consensus 127 G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 127 GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 555555555555566779999999999999999884 457888888887776543
No 326
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=84.63 E-value=0.52 Score=34.32 Aligned_cols=39 Identities=13% Similarity=-0.092 Sum_probs=30.7
Q ss_pred hcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 81 LFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 81 ~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
..++|++||+|++.++|..|+. +..+.++.+.+..+..+
T Consensus 69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 4579999999999998888875 45788888877666544
No 327
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.61 E-value=0.57 Score=31.88 Aligned_cols=38 Identities=5% Similarity=-0.051 Sum_probs=29.8
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
..++++||+|++.+++..|+. +..+.++.+.+..+..+
T Consensus 54 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 54 GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 568999999999998888874 56778888777665543
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=84.51 E-value=0.23 Score=36.24 Aligned_cols=45 Identities=16% Similarity=0.007 Sum_probs=32.5
Q ss_pred cccccchhhhcCCCceeeCccCHHHHHHHHhc--Cccchhhhhhcccc
Q 025814 72 LPQYHQAQQLFQRDAQTITPEALESVKAALAS--SDIEHKAETKKKSI 117 (247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~ 117 (247)
+....+.. ..++|++||+|++.+++.+|+.. ..+.++.+.+....
T Consensus 73 v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 73 ITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp EECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred EEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 33344444 67899999999999999999974 35667776665543
No 329
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.47 E-value=0.9 Score=30.47 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=32.3
Q ss_pred cCCCceeeCccCHHHHHHHHh---c-Cccchhhhhhccccccccc
Q 025814 82 FQRDAQTITPEALESVKAALA---S-SDIEHKAETKKKSIPRKAA 122 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~-~~~~~~~~~~~~~~~r~~~ 122 (247)
..++++||+|++.++|.+|+. + ..+.++.+.+..+..+...
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 458999999999888888875 4 5688988888877665443
No 330
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=84.32 E-value=0.26 Score=36.88 Aligned_cols=53 Identities=2% Similarity=-0.108 Sum_probs=39.6
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+.|..+....+..+...++++||+|++.++|.+|+. ...+.++.+.+..+...
T Consensus 64 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 64 GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 555555555555566678999999999999999886 35678888888776644
No 331
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.92 E-value=0.24 Score=35.43 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=31.9
Q ss_pred ccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhcc
Q 025814 69 VYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKKK 115 (247)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~~ 115 (247)
+..+....+.. ..++|++||+|++.+++.+|+... .+.++.+.+..
T Consensus 47 v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 47 VAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp GGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred ceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 45554444444 677999999999999999998732 45555554433
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.42 E-value=0.56 Score=31.91 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.7
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
..++++||+|++.++|.+|+. +..+.++.+.+..+..+.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 568999999999999999885 446788888777665543
No 333
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.38 E-value=1.8 Score=30.28 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=26.2
Q ss_pred hcCCCceeeCccCHHHHHHHHhcC-ccchhhhhh
Q 025814 81 LFQRDAQTITPEALESVKAALASS-DIEHKAETK 113 (247)
Q Consensus 81 ~~~~~~~~v~~~~~~~a~~al~~~-~~~~~~~~~ 113 (247)
..+++++||+|++.++|.+|+... .++++.+..
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 578999999999999999999754 456655443
No 334
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.27 E-value=0.81 Score=31.99 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=37.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+.+..+....+. ...+++++||+|++.+++.+|+. +..+.++.+.+..+...
T Consensus 40 G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 40 GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 556555554444 35668999999999998888875 45788888888766543
No 335
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.11 E-value=0.7 Score=31.58 Aligned_cols=43 Identities=28% Similarity=0.226 Sum_probs=33.7
Q ss_pred hhhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccccc
Q 025814 79 QQLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r~~ 121 (247)
.....++++||+|++.++|.+|+.. ..+.++.+.+..+..+..
T Consensus 48 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 48 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 3556799999999999999999863 467888888877765543
No 336
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=82.98 E-value=0.51 Score=31.62 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=35.4
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+.+..+.... .....++++||+|++.+++.+|+. +..+.++.+.+..+...
T Consensus 33 G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 33 GHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4444443333 244568999999999998888865 45788888877666544
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=82.95 E-value=0.48 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCceeeCccCHHHHHHHHhcCc--cchhhhhhcccccc
Q 025814 83 QRDAQTITPEALESVKAALASSD--IEHKAETKKKSIPR 119 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~~~--~~~~~~~~~~~~~r 119 (247)
++|++||+|++.++|.+ +++.. +.++.+.+..+.++
T Consensus 47 srGfaFV~F~~~~~A~~-~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQS-LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CCSEEEEEESCHHHHHH-HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEEECCHHHHHH-HcCCCcccCCEEEEEEEcCCC
Confidence 79999999999999985 44443 34666666555443
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=82.51 E-value=0.29 Score=34.41 Aligned_cols=51 Identities=10% Similarity=-0.124 Sum_probs=36.2
Q ss_pred CCCccccccccchh-hhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhccc
Q 025814 66 VAPVYSLPQYHQAQ-QLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKKS 116 (247)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~~ 116 (247)
+|.+..+....+.. ...++|++||+|++.++|.+|+ ++..+.++.+.+...
T Consensus 37 ~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 37 YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 47777776655443 2467999999999988888776 456777777666544
No 339
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.30 E-value=0.93 Score=31.48 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=33.1
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHhc-Cccchhhhhhccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS-SDIEHKAETKKKSIP 118 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~-~~~~~~~~~~~~~~~ 118 (247)
|.+..+... ...+|++||+|++.++|..|+.. ..+.++.+.+..+..
T Consensus 42 G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 42 GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEG 89 (100)
T ss_dssp SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSC
T ss_pred CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccC
Confidence 655554433 25799999999999999999975 345566666655443
No 340
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=82.17 E-value=0.35 Score=33.51 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=33.7
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~ 115 (247)
+.+..+....+. ....++++||+|++.++|.+|+. +..+.++.+.+..
T Consensus 54 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 54 GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 556555555554 66678999999999999888875 3466666665543
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=81.96 E-value=0.82 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=30.3
Q ss_pred cCCCceeeCccCHHHHHHHH---hcCccchhhhhhcccccc
Q 025814 82 FQRDAQTITPEALESVKAAL---ASSDIEHKAETKKKSIPR 119 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~~~~r 119 (247)
..++++||+|++.++|.+|+ ++..+.++.+.+..+..+
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46899999999999888887 456788888887776554
No 342
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=81.90 E-value=0.4 Score=33.51 Aligned_cols=46 Identities=7% Similarity=-0.087 Sum_probs=33.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhh
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETK 113 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~ 113 (247)
|.+..+....+.. ..++|++||+|++.++|.+|+. +..+.++.+.+
T Consensus 52 G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 52 GEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 6666665555433 5679999999999888887764 55677776654
No 343
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.83 E-value=0.92 Score=30.74 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCceeeCccCHHHHHHHHh---cCccc--hhhhhhccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIE--HKAETKKKSIPRK 120 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~--~~~~~~~~~~~r~ 120 (247)
++++||+|++.++|.+|+. +..+. ++.+.+..+..+.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 7899999999998888875 45677 7777776665543
No 344
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.52 E-value=0.98 Score=31.36 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=30.4
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++++||+|++.++|.+|+. +..+.++.+.+..+..+..
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 8999999999999988874 5678888888877665543
No 345
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=80.57 E-value=1.8 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccccC
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKAAG 123 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~~~ 123 (247)
++++||+|++.++|.+|+. ...+.++.+.+..+..+....
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 7899999999999998876 457888888888776655433
No 346
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=80.52 E-value=0.52 Score=31.87 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=31.2
Q ss_pred hhcCCCceeeCccCHHHHHHHHhc---Cccchhhhhhcccccc
Q 025814 80 QLFQRDAQTITPEALESVKAALAS---SDIEHKAETKKKSIPR 119 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~~---~~~~~~~~~~~~~~~r 119 (247)
...+++++||+|++.++|..|+.. ..+.++.+.+..+..+
T Consensus 49 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 455689999999999999999873 4678888777666544
No 347
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.39 E-value=1.2 Score=29.73 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++++||+|++.++|.+|+. ...+.++.+.+..+..+..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 7999999999999988875 4578888888877665543
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=79.99 E-value=1.1 Score=34.56 Aligned_cols=50 Identities=4% Similarity=-0.088 Sum_probs=35.2
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
+.+..+....+. ...+++++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 113 G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 113 GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 445444444444 56678999999999999999886 346777777765544
No 349
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=79.85 E-value=0.39 Score=36.41 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=40.3
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
|.+..+....+..+..+++++||+|.+.+.|..|+. +..+.++.+.+..+..+.
T Consensus 97 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 97 GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 666666566555667778999999999888888875 457888888877765443
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=79.48 E-value=0.86 Score=31.84 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=35.0
Q ss_pred CCCccccccccchhh--hcCCCceeeCccCHHHHHHHH---hcCccchhhhhhcc
Q 025814 66 VAPVYSLPQYHQAQQ--LFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKK 115 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~ 115 (247)
+|.+..+....+... ..++|++||.|++.++|.+|+ ++..+.++.+.+..
T Consensus 39 ~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~ 93 (105)
T 3v4m_A 39 YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 93 (105)
T ss_dssp TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 377766655554433 357899999999988888776 45667777766644
No 351
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.39 E-value=0.37 Score=32.55 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=33.5
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~ 115 (247)
+.+..+....+.. ...++++||+|++.+++.+|+. +..+.++.+.+..
T Consensus 41 G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 41 GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 5555555544443 5678999999999998888875 4467777666544
No 352
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=79.23 E-value=0.54 Score=32.65 Aligned_cols=48 Identities=2% Similarity=-0.148 Sum_probs=32.8
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchh-hhhhccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHK-AETKKKS 116 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~-~~~~~~~ 116 (247)
|.+..+... ..+..++|++||+|++.++|.+|+. +..+.++ .+.+..+
T Consensus 46 G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 46 GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLF 97 (105)
T ss_dssp SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence 555554333 2456789999999999888888876 3466776 6666544
No 353
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=78.83 E-value=0.67 Score=32.34 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=27.6
Q ss_pred CCCceeeCccCHHHHHHHHhc---Cc--cchhhhhhccccc
Q 025814 83 QRDAQTITPEALESVKAALAS---SD--IEHKAETKKKSIP 118 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~---~~--~~~~~~~~~~~~~ 118 (247)
.|+++||.|++.++|.+|++. .. +.++.+.+..+..
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 589999999999999999864 33 5677777665543
No 354
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=78.82 E-value=0.89 Score=32.22 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=28.6
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
.++|++||+|++.++|.+|+. +..++++.+.+..+.
T Consensus 65 ~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 65 DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 379999999999999998885 446788887776543
No 355
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.32 E-value=0.96 Score=30.76 Aligned_cols=37 Identities=11% Similarity=-0.021 Sum_probs=29.2
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
.++++||+|++.++|.+|+. +..+.++.+.+..+..+
T Consensus 50 ~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 48999999999888888874 56788888888776544
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=78.11 E-value=0.14 Score=35.31 Aligned_cols=52 Identities=8% Similarity=-0.023 Sum_probs=38.0
Q ss_pred CCccccccccchhhhcCCCceeeCccCHHHHHHHHh-cCccchhhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA-SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~-~~~~~~~~~~~~~~~~r 119 (247)
|.+..+....+. ....++++||+|++.+++.+|+. ...++++.+.+.....+
T Consensus 34 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 34 GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEEC
T ss_pred CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcC
Confidence 556555555554 66788999999999999999987 33677777776665544
No 357
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.79 E-value=0.71 Score=32.25 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=34.5
Q ss_pred CCCCccccccccchhhhcCCCceeeCccCHHHHHHHHhc---C--ccchhhhhhcccccc
Q 025814 65 PVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALAS---S--DIEHKAETKKKSIPR 119 (247)
Q Consensus 65 P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~---~--~~~~~~~~~~~~~~r 119 (247)
++|.|..+... ..++++||+|++.++|.+|+.. . .+.++.+.+..+...
T Consensus 39 ~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 39 PFGVISNHLIL------NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp GGSCEEEEEEC------SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred hcCCEEEEEEE------cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 34555554332 2468999999999999998863 2 478888888776543
No 358
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.57 E-value=1.4 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRKA 121 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~~ 121 (247)
++++||+|++.+++.+|+. +..+.++.+.+..+..+..
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 6799999999999888874 4578888888877765543
No 359
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=77.54 E-value=1.1 Score=30.56 Aligned_cols=35 Identities=17% Similarity=-0.019 Sum_probs=26.7
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
.++++||+|++.++|.+|+. +..+.++.+.+..+.
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 48999999999999999886 345667776665543
No 360
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=77.50 E-value=1.3 Score=30.82 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=29.3
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
.++++||+|++.++|.+|+. +..+.++.+.+..+..
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 58999999999888888874 5678888888877653
No 361
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.42 E-value=1.4 Score=29.86 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=30.3
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
.++++||+|++.++|.+|+. +..+.++.+.+..+..+.
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 48899999999999998876 457788888887766544
No 362
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.78 E-value=1.4 Score=30.43 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=30.5
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
.|.+||.|++.++|.+|+. +.++.++.+++..+..+.
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 3899999999999888864 568899999998876554
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.68 E-value=1.2 Score=29.59 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=26.8
Q ss_pred CCCceeeCccCHHHHHHHHhc-Cccchhhhhhccccccc
Q 025814 83 QRDAQTITPEALESVKAALAS-SDIEHKAETKKKSIPRK 120 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~-~~~~~~~~~~~~~~~r~ 120 (247)
+++++||+|++.++|++++.. ..+.++.+.+..+.++.
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCC
Confidence 689999999999999865443 23466666666555443
No 364
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.58 E-value=1.4 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=29.8
Q ss_pred CceeeCccCHHHHHHHHhc---Cccch-----hhhhhccccccccc
Q 025814 85 DAQTITPEALESVKAALAS---SDIEH-----KAETKKKSIPRKAA 122 (247)
Q Consensus 85 ~~~~v~~~~~~~a~~al~~---~~~~~-----~~~~~~~~~~r~~~ 122 (247)
+++||+|++.++|.+|+.. ..+.+ +.+.+..+..+...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 8999999999999998874 35777 78888777665543
No 365
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=76.35 E-value=1.3 Score=30.93 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
++++||+|++.++|.+|+. +..+.++.+.+..+..+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 8999999999999988875 55778888777665443
No 366
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=76.05 E-value=1.1 Score=30.26 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=29.6
Q ss_pred hhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhccccc
Q 025814 80 QLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIP 118 (247)
Q Consensus 80 ~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~ 118 (247)
....++++||+|++.+++..|+. +..+.++.+.+..+..
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 44568999999999999888875 4567777777765543
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=75.83 E-value=0.44 Score=35.13 Aligned_cols=48 Identities=6% Similarity=0.023 Sum_probs=34.3
Q ss_pred CCCccccccccchhhhcCCCceeeCccC----H-HH---HHHHHh-----cCccchhhhhh
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEA----L-ES---VKAALA-----SSDIEHKAETK 113 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~-~~---a~~al~-----~~~~~~~~~~~ 113 (247)
+|.|..+....+..+..++|++||+|.+ . +. |.+|+. +..++++.+++
T Consensus 30 fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV 90 (136)
T 2j8a_A 30 YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEV 90 (136)
T ss_dssp TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEE
T ss_pred cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEE
Confidence 4899999999999999999999999984 2 21 555544 33555555444
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=75.72 E-value=1.2 Score=31.65 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=31.5
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhcc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKK 115 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~ 115 (247)
+|.+..+.+..+. .+|++||.|++.++|.+|+ ++..+.|+.+.+..
T Consensus 41 fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~ 89 (114)
T 3s6e_A 41 HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 89 (114)
T ss_dssp TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4667665543332 4899999999988888776 45567777665533
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.34 E-value=1.5 Score=30.69 Aligned_cols=50 Identities=6% Similarity=-0.032 Sum_probs=35.3
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+|.+..+.. .+. .++|++||+|++.++|.+|+. +..+.++.+.+..+..+
T Consensus 50 ~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 50 FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 366666533 222 279999999999999988875 45678888887766543
No 370
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=75.08 E-value=1.8 Score=29.25 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=30.0
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
.++++||+|++.+++..|+. +..+.++.+.+..+..+.
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 38999999999999988876 457788888887765443
No 371
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.18 E-value=1.2 Score=31.03 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.2
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHh
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALA 102 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~ 102 (247)
++.+..+....+. ...+++++||+|++.+++.+|+.
T Consensus 49 ~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 49 FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHH
Confidence 3666666655555 66778999999999999999886
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=73.98 E-value=0.57 Score=33.67 Aligned_cols=51 Identities=8% Similarity=-0.040 Sum_probs=35.8
Q ss_pred CCCCccccccccchh----hhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhcc
Q 025814 65 PVAPVYSLPQYHQAQ----QLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKK 115 (247)
Q Consensus 65 P~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~ 115 (247)
.+|.|..+.+..+.. +..++|+.||+|++.++|.+|+ ++..+.++.+.+..
T Consensus 48 k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~ 105 (118)
T 3ue2_A 48 KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 105 (118)
T ss_dssp TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 347777776665543 3456799999999988888776 45667777666543
No 373
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.64 E-value=2.6 Score=27.87 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=29.5
Q ss_pred CCceeeCccCHHHHHHHHh---cCccchhhhhhccccccc
Q 025814 84 RDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPRK 120 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r~ 120 (247)
++++||+|++.+++.+|+. +..+.++.+.+..+..+.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 6799999999999988875 457888888887766543
No 374
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=72.63 E-value=1.2 Score=32.50 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=32.7
Q ss_pred hhhcCCCceeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 79 QQLFQRDAQTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 79 ~~~~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
.+..+++++||+|.+.++|.+|+. +..+.++.+.+..+..+
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356779999999999999888875 56788888888776544
No 375
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=72.57 E-value=1.7 Score=28.81 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=27.3
Q ss_pred cCCCceeeCccCHHHHHHHHh---cCccchhhhhhccc
Q 025814 82 FQRDAQTITPEALESVKAALA---SSDIEHKAETKKKS 116 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~ 116 (247)
..++++||+|++.+++.+|+. +..+.++.+.+..+
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 568999999999999888876 44677777766553
No 376
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.38 E-value=1.6 Score=28.58 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=23.9
Q ss_pred CCCceeeCccCHHHHHHHHhc----Cccchhhhhh
Q 025814 83 QRDAQTITPEALESVKAALAS----SDIEHKAETK 113 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~----~~~~~~~~~~ 113 (247)
.++++||+|++.++|..|+.. ..+.++.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 479999999999999999863 3456655544
No 377
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=69.89 E-value=1.9 Score=28.26 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=23.7
Q ss_pred cCCCceeeCccCHHHHHHHHhc--Cccchhhhhh
Q 025814 82 FQRDAQTITPEALESVKAALAS--SDIEHKAETK 113 (247)
Q Consensus 82 ~~~~~~~v~~~~~~~a~~al~~--~~~~~~~~~~ 113 (247)
.+++++||+|++.+++.+|+.. ..+.++.+.+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 84 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEE
Confidence 3489999999999999999832 3455655544
No 378
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.27 E-value=1.3 Score=34.57 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=33.6
Q ss_pred CCCccccccccchhhhcCCCceeeCccCHHHHHHHHhcC--ccchhhhhhc
Q 025814 66 VAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS--DIEHKAETKK 114 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~al~~~--~~~~~~~~~~ 114 (247)
+|.+..+....+. ....+|++||+|++.++|.+|+... .++|+.+.+.
T Consensus 133 ~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 133 KGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp SCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred CCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 3666555444433 3567999999999999999999753 5566665553
No 379
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.88 E-value=4.2 Score=27.10 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=27.7
Q ss_pred ceeeCccCHHHHHHHHhc--Cccchhhhhhccccccc
Q 025814 86 AQTITPEALESVKAALAS--SDIEHKAETKKKSIPRK 120 (247)
Q Consensus 86 ~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~ 120 (247)
++||+|++.+++.+|+.. ..+.++.+.+..+..+.
T Consensus 47 ~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSC
T ss_pred EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCC
Confidence 999999999999999873 36778888887655443
No 380
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=68.52 E-value=3.7 Score=28.76 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=22.2
Q ss_pred CceeeCccCHHHHHHHHh---cCccchhhh
Q 025814 85 DAQTITPEALESVKAALA---SSDIEHKAE 111 (247)
Q Consensus 85 ~~~~v~~~~~~~a~~al~---~~~~~~~~~ 111 (247)
+++||+|++.++|.+|+. +..++++.+
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 999999999888888876 457888773
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.32 E-value=4.6 Score=28.24 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=38.9
Q ss_pred CceeeCccCHHHHHHHHhc--CccchhhhhhcccccccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCc
Q 025814 85 DAQTITPEALESVKAALAS--SDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVN 151 (247)
Q Consensus 85 ~~~~v~~~~~~~a~~al~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~ 151 (247)
+.++|+|.+.+.++..|.. +.+++..+.+.... ..+..+|++.+|+..++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~-----------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP-----------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC-----------------CCCCCCCCCCSCCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC-----------------CCCcceEeeecCCCCCC
Confidence 7789999999999999976 57788777775543 33344799999988764
No 382
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.03 E-value=3.4 Score=28.77 Aligned_cols=35 Identities=9% Similarity=-0.112 Sum_probs=27.6
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccchhhhhhcccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEHKAETKKKSI 117 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~ 117 (247)
.++++||+|++.++|..|+. +..+.++.+.+..+.
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 68999999999888888865 557788877776543
No 383
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.97 E-value=4.8 Score=28.58 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=18.2
Q ss_pred CCCceeeCccCHHHHHHHHhc
Q 025814 83 QRDAQTITPEALESVKAALAS 103 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~ 103 (247)
.|+++||+|++.++|.+|+..
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHH
Confidence 489999999999999888764
No 384
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.99 E-value=9.2 Score=25.31 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=26.1
Q ss_pred eeeCccCHHHHHHHHh---cCccchhhhhhcccccc
Q 025814 87 QTITPEALESVKAALA---SSDIEHKAETKKKSIPR 119 (247)
Q Consensus 87 ~~v~~~~~~~a~~al~---~~~~~~~~~~~~~~~~r 119 (247)
+||+|++.+++..|+. +..+.++.+.+..+.++
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 9999999888888875 56788888887766554
No 385
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=50.20 E-value=9.7 Score=28.89 Aligned_cols=38 Identities=11% Similarity=-0.118 Sum_probs=27.8
Q ss_pred CCCceeeCccCHHHHHHHHh---cCccch--hhhhhccccccc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDIEH--KAETKKKSIPRK 120 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~~~--~~~~~~~~~~r~ 120 (247)
.++++||+|++.++|.+|+. +.++.+ +.+++..+..+.
T Consensus 83 ~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 83 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 46789999999888888875 456744 777777766553
No 386
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.82 E-value=8 Score=26.34 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=26.0
Q ss_pred CCceeeCccCHHHHHHHHh--cCccchhhhhhcccc
Q 025814 84 RDAQTITPEALESVKAALA--SSDIEHKAETKKKSI 117 (247)
Q Consensus 84 ~~~~~v~~~~~~~a~~al~--~~~~~~~~~~~~~~~ 117 (247)
.+..||+|++.++|.+|++ +..+.++.+++..+.
T Consensus 49 ~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKS 84 (91)
T ss_dssp SSSEEEEESSHHHHHHGGGGTTCEETTEEEEEEECC
T ss_pred cCCEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCC
Confidence 4558999999999999886 346778877776554
No 387
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=44.13 E-value=9.2 Score=30.93 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=18.8
Q ss_pred CCCceeeCccCHHHHHHHHh---cCcc
Q 025814 83 QRDAQTITPEALESVKAALA---SSDI 106 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~---~~~~ 106 (247)
.++++||+|.+.++|..|+. +..+
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 58999999998888877764 4455
No 388
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.26 E-value=58 Score=24.79 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=36.9
Q ss_pred EEEEcCCCC---------CCcHHHHHHHh--ccCCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHH
Q 025814 140 RLFCGDLGN---------EVNDDVLSKAF--SRFPSFNMAKVVRDKRTGKTKGYGFISFAN-PSDIAAAL 197 (247)
Q Consensus 140 ~lfV~nLp~---------~~~e~~L~~~F--~~~G~i~~v~i~~~~~tg~~kg~~FV~f~~-~~~a~~Al 197 (247)
.+.|-|++. .....+|++.| ..|.++. |+.+.+. ..+.|++.|.|.+ -.-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 456667765 13457899977 9998876 5555553 3478999999974 44444454
No 389
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=41.31 E-value=4.6 Score=30.13 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=15.4
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCcceEEEEEec
Q 025814 153 DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFA 188 (247)
Q Consensus 153 ~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~~FV~f~ 188 (247)
+|+.++|...|.|+.. . ..+|||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N-----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E-----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E-----CCCCeeEEeeC
Confidence 4555667766665522 2 23789999865
No 390
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.98 E-value=22 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCccccccccchhhhcCCCc-eeeCccCHHHHHHHH---hcCccch--hhhhhccccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDA-QTITPEALESVKAAL---ASSDIEH--KAETKKKSIPRK 120 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~a~~al---~~~~~~~--~~~~~~~~~~r~ 120 (247)
|.+..+.... . .|+ +||+|++.++|.+|+ ++.++.+ +.+++..+..+.
T Consensus 50 G~V~~v~i~~--~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 50 GKVQRIVIFK--R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SCEEEEEEEE--S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEEEe--C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6665554422 1 375 999999877777665 4567776 466666665543
No 391
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=39.09 E-value=15 Score=31.30 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=18.3
Q ss_pred CCCceeeCccCHHHHHHHHhc
Q 025814 83 QRDAQTITPEALESVKAALAS 103 (247)
Q Consensus 83 ~~~~~~v~~~~~~~a~~al~~ 103 (247)
.|+++||+|++.++|++|++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHH
Confidence 689999999998888888764
No 392
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=38.63 E-value=8.5 Score=30.12 Aligned_cols=49 Identities=6% Similarity=-0.045 Sum_probs=34.0
Q ss_pred CCccccccccch----hhhcCCCceeeCccCHHHHHHHH---hcCccchhhhhhcc
Q 025814 67 APVYSLPQYHQA----QQLFQRDAQTITPEALESVKAAL---ASSDIEHKAETKKK 115 (247)
Q Consensus 67 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~a~~al---~~~~~~~~~~~~~~ 115 (247)
|.+..+.+..+. .+..++|..||.|.+.+++.+|+ ++..+.|+.+....
T Consensus 154 G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 154 GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 777666655333 24477899999999888777665 45677777766544
No 393
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=38.12 E-value=17 Score=26.27 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=31.6
Q ss_pred CCccccccccchhhhcCCCc-eeeCccCHHHHHHHH---hcCccch--hhhhhcccccc
Q 025814 67 APVYSLPQYHQAQQLFQRDA-QTITPEALESVKAAL---ASSDIEH--KAETKKKSIPR 119 (247)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~a~~al---~~~~~~~--~~~~~~~~~~r 119 (247)
|.+..+.... ..+++ +||.|++.++|..|+ ++.++.+ +.+++..+..+
T Consensus 53 G~V~~V~i~~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 53 GTVLKIITFT-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SCEEEEEEEE-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCEEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 6665553332 12677 999999887777775 5667776 66677666544
No 394
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=36.75 E-value=84 Score=21.60 Aligned_cols=48 Identities=6% Similarity=0.246 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHhcc-CC---CeeEEEEEec-CCCCCcceEEEEEecCHHHHHHH
Q 025814 148 NEVNDDVLSKAFSR-FP---SFNMAKVVRD-KRTGKTKGYGFISFANPSDIAAA 196 (247)
Q Consensus 148 ~~~~e~~L~~~F~~-~G---~i~~v~i~~~-~~tg~~kg~~FV~f~~~~~a~~A 196 (247)
...+..+|++.+.. |+ .+..|.=++. -..|++.|||.| |++.+.+.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45666777665543 33 3444433333 234566777765 6676666543
No 395
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=32.62 E-value=1.1e+02 Score=21.13 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHhcc-C---CCeeEEEEEec-CCCCCcceEEEEEecCHHHHHH
Q 025814 148 NEVNDDVLSKAFSR-F---PSFNMAKVVRD-KRTGKTKGYGFISFANPSDIAA 195 (247)
Q Consensus 148 ~~~~e~~L~~~F~~-~---G~i~~v~i~~~-~~tg~~kg~~FV~f~~~~~a~~ 195 (247)
...+..+|++.+.. | ..+..|.=++. -..|++.|||.| |++.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45666777665543 2 33344433333 234567777765 777776654
No 396
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=31.46 E-value=1.1e+02 Score=21.26 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCcHHHHHHHhcc-CC---CeeEEEEEec-CCCCCcceEEEEEecCHHHHHH
Q 025814 149 EVNDDVLSKAFSR-FP---SFNMAKVVRD-KRTGKTKGYGFISFANPSDIAA 195 (247)
Q Consensus 149 ~~~e~~L~~~F~~-~G---~i~~v~i~~~-~~tg~~kg~~FV~f~~~~~a~~ 195 (247)
..+..+|++.+.. |+ .+..|.=++. -..|++.|||.| |++.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566667655542 33 3334433333 234567788865 777777664
No 397
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=31.44 E-value=69 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.7
Q ss_pred CcHHHHHHHhccCCCe---eEEEEEecCCCCCcceEEEEE
Q 025814 150 VNDDVLSKAFSRFPSF---NMAKVVRDKRTGKTKGYGFIS 186 (247)
Q Consensus 150 ~~e~~L~~~F~~~G~i---~~v~i~~~~~tg~~kg~~FV~ 186 (247)
.++++|+++-.+.|.+ .++.+..|..+|..+.|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999987 455666663489999888753
No 398
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.18 E-value=57 Score=26.57 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEe
Q 025814 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 172 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~ 172 (247)
.-+.|+|||+.++...|.+++.. +.+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 36889999999999999999987 6666555443
No 399
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.57 E-value=30 Score=28.38 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEe
Q 025814 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 172 (247)
Q Consensus 140 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~ 172 (247)
.+.|+|||+.++...|.+++.....+..+.++.
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 578999999999999999998665666555544
No 400
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.35 E-value=1.2e+02 Score=20.23 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.0
Q ss_pred CeeEEEEEecCCCCCcceEEEEEecC
Q 025814 164 SFNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 164 ~i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
.|.+|+|..-...|+-+|||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677776655568899999999975
No 401
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.56 E-value=18 Score=25.27 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=39.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEEecCCCCCcceE--EEEEecCHHHHHHHHHHhCCce
Q 025814 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY--GFISFANPSDIAAALKEMNGKY 204 (247)
Q Consensus 135 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~--~FV~f~~~~~a~~Al~~l~g~~ 204 (247)
+....+|-|... .++++|..+..+.+ +..+.+.+....|+.. | -+-.|.+.++|.+|+..|-...
T Consensus 22 p~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 22 PSSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 334455655443 45667777777776 4445555543334332 2 2347889999999998876543
No 402
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=21.37 E-value=2e+02 Score=19.62 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=40.9
Q ss_pred cEEEEcCCCCCCcHHH--HHHHhc-----cCC--------CeeEEEEEecCCCCC--cceEEEEEec---CHHHHHHHHH
Q 025814 139 YRLFCGDLGNEVNDDV--LSKAFS-----RFP--------SFNMAKVVRDKRTGK--TKGYGFISFA---NPSDIAAALK 198 (247)
Q Consensus 139 ~~lfV~nLp~~~~e~~--L~~~F~-----~~G--------~i~~v~i~~~~~tg~--~kg~~FV~f~---~~~~a~~Al~ 198 (247)
++|.|-++|.+-.+.. +..+|. .|. .|..+.-.-.+.+.+ ....-.|.|. +.|...+|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 4899999999743332 444442 232 233443322221111 1123445554 5556666666
Q ss_pred HhCCceeCCEeEEEE
Q 025814 199 EMNGKYVGNRPIKLR 213 (247)
Q Consensus 199 ~l~g~~i~g~~l~V~ 213 (247)
........|..|++.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 766788899999875
No 403
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.31 E-value=65 Score=21.52 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCc
Q 025814 179 TKGYGFISFANPSDIAAALKEMNGK 203 (247)
Q Consensus 179 ~kg~~FV~f~~~~~a~~Al~~l~g~ 203 (247)
..||-||+++..++...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999999988888877775
No 404
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.96 E-value=1.4e+02 Score=20.53 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=19.9
Q ss_pred CeeEEEEEecCCCCCcceEEEEEecC
Q 025814 164 SFNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 164 ~i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
.|.+|+|..-...|+-++|+=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677776655568899999999975
No 405
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.27 E-value=1.4e+02 Score=20.59 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.6
Q ss_pred CeeEEEEEecCCCCCcceEEEEEecC
Q 025814 164 SFNMAKVVRDKRTGKTKGYGFISFAN 189 (247)
Q Consensus 164 ~i~~v~i~~~~~tg~~kg~~FV~f~~ 189 (247)
.|.+|+|..-...|+-+|||=|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 35667776655568899999999975
Done!