Citrus Sinensis ID: 025814

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKSVLHK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHcccccHHHHHcccccHHHHHccccccccccccccccccEEEcccccccccHHHHHHHHcccccccEEEEEEEccccccccEEEEECccHHHHHHHHHHHccCECccEEEEEEcccccccccHHHHHHHHHcccccccccccccccc
****************************YFPLPFHL**************AAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQ********************************************DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKL***********************************
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MSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKSVLHK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
RNA-binding protein 42 Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.probableQ0P5L0
RNA-binding protein 42 Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.probableQ9BTD8
RNA-binding protein 42 Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.probableQ91V81

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2QFJ, chain A
Confidence level:very confident
Coverage over the Query: 67-219
View the alignment between query and template
View the model in PyMOL