BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025815
         (247 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1Y6E5|DAPD_LEPCP 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
           OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
           SP-6) GN=dapD PE=3 SV=1
          Length = 274

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 159 AHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLR 209
           A APA  R  +    G LDA  GR+R A  +  GQ ++N +  +AV L  R
Sbjct: 22  ASAPAAVREAVAHVLGELDA--GRIRVAERQAVGQWQVNQWVKKAVLLSFR 70


>sp|P85446|ATPB_PENGL ATP synthase subunit beta, mitochondrial (Fragments) OS=Penicillium
           glabrum GN=atp2 PE=1 SV=2
          Length = 114

 Score = 33.1 bits (74), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 143 FGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSAR 202
            GKTKV      +FG  + P   R    QA   + AL+GR+R    E G  P ++P  ++
Sbjct: 48  VGKTKV----ALVFGQMNEPPGARARFTQAGSEVSALLGRMR-GISELGIYPAVDPLDSK 102

Query: 203 A 203
           +
Sbjct: 103 S 103


>sp|P70399|TP53B_MOUSE Tumor suppressor p53-binding protein 1 OS=Mus musculus GN=Tp53bp1
            PE=1 SV=2
          Length = 1957

 Score = 31.6 bits (70), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 73   TTAARTHHSMLFSSPQASIQSPVVSFG-RYEAQKRRD 108
            TTA R + S   + P AS+Q PV  FG  YEAQ+ ++
Sbjct: 995  TTAERKNGSTAIAEPVASLQKPVPVFGCIYEAQQEKE 1031


>sp|P21052|F11_VACCC Protein F11 OS=Vaccinia virus (strain Copenhagen) GN=F11L PE=3 SV=1
          Length = 354

 Score = 31.2 bits (69), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 84  FSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQF 143
           F  P+ S         R  ++KR+D    +  L QHR  L L+  +   + EFL Y + +
Sbjct: 212 FVIPEISSNDNAKIAARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNSY 271

Query: 144 GKT 146
             T
Sbjct: 272 ADT 274


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.132    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,802,429
Number of Sequences: 539616
Number of extensions: 3364991
Number of successful extensions: 12587
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12340
Number of HSP's gapped (non-prelim): 209
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)