Query 025815
Match_columns 247
No_of_seqs 78 out of 80
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 18:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 88.8 0.68 2.3E-05 36.2 5.3 70 104-201 25-95 (324)
2 3nrw_A Phage integrase/site-sp 82.8 3.9 0.00013 28.8 6.3 68 106-200 33-102 (117)
3 1a0p_A Site-specific recombina 76.7 6.3 0.00022 30.2 6.2 69 104-200 26-96 (290)
4 2ols_A Phosphoenolpyruvate syn 73.2 3 0.0001 41.0 4.4 39 180-218 561-629 (794)
5 2x0s_A Pyruvate phosphate diki 67.0 6 0.00021 39.7 5.1 25 195-219 683-710 (913)
6 2khq_A Integrase; all-alpha, s 66.9 11 0.00036 25.3 4.9 63 107-200 30-94 (110)
7 2oxo_A Integrase; DNA-binding 66.5 15 0.00053 23.3 5.4 62 107-200 29-93 (103)
8 2eqe_A Tumor necrosis factor, 66.1 3.8 0.00013 28.8 2.5 26 141-166 11-36 (48)
9 2zxj_A Transcriptional regulat 61.8 3.6 0.00012 31.4 1.9 21 175-195 76-96 (120)
10 2kkp_A Phage integrase; SAM-li 60.5 18 0.00063 24.2 5.1 53 122-200 47-101 (117)
11 2xz9_A Phosphoenolpyruvate-pro 58.7 15 0.00051 32.4 5.5 34 177-210 62-117 (324)
12 3zq7_A KDP operon transcriptio 58.4 4.8 0.00017 28.4 2.0 21 174-194 67-87 (102)
13 1vbg_A Pyruvate,orthophosphate 57.6 8.9 0.00031 38.6 4.4 25 194-218 662-689 (876)
14 2z9m_A Response regulator YYCF 55.4 5.5 0.00019 29.2 1.9 21 174-194 75-95 (120)
15 1z19_A Integrase; protein-DNA 53.7 20 0.00068 27.4 4.9 65 105-200 27-93 (283)
16 1kbl_A PPDK, pyruvate phosphat 53.3 9.8 0.00034 38.3 3.9 25 194-218 655-682 (873)
17 2wqd_A Phosphoenolpyruvate-pro 53.2 16 0.00055 35.0 5.2 42 176-217 312-377 (572)
18 2kkv_A Integrase; protein stru 50.2 58 0.002 22.3 7.1 61 112-200 35-98 (121)
19 2kj8_A Putative prophage CPS-5 49.2 53 0.0018 22.6 6.1 51 123-200 45-97 (118)
20 3mi9_C Protein TAT; P-TEFB, HI 49.2 4.1 0.00014 31.5 0.4 15 215-230 39-53 (86)
21 2kiw_A INT protein; alpha, str 48.1 58 0.002 21.7 6.1 50 123-200 39-91 (111)
22 2kd1_A DNA integration/recombi 47.3 31 0.0011 23.3 4.6 52 122-200 45-99 (118)
23 2hwg_A Phosphoenolpyruvate-pro 46.8 19 0.00064 34.5 4.5 35 176-210 310-366 (575)
24 3rjp_A COVR; winged helix-turn 44.2 11 0.00037 26.2 1.9 18 174-191 61-78 (96)
25 1tac_A TAT protein; transcript 42.0 5.6 0.00019 30.8 0.1 15 215-230 39-53 (86)
26 2key_A Putative phage integras 40.3 22 0.00075 23.9 2.9 51 123-200 47-101 (112)
27 2k4j_A Putative transcriptiona 37.8 23 0.0008 26.0 2.9 22 173-194 79-100 (115)
28 1h6z_A Pyruvate phosphate diki 37.2 30 0.001 35.3 4.5 37 175-218 670-709 (913)
29 2hqn_A Putative transcriptiona 35.2 17 0.00058 25.9 1.7 20 174-193 68-87 (109)
30 1opc_A OMPR, OMPRC; transcript 34.2 16 0.00055 26.0 1.5 20 174-193 70-89 (110)
31 1h1j_S THO1 protein; SAP domai 34.0 27 0.00092 24.0 2.5 26 173-198 25-50 (51)
32 2pk2_A Cyclin-T1, protein TAT; 33.9 8.6 0.00029 34.0 0.0 23 192-224 310-332 (358)
33 2kzy_A ZNF216-A20, zfand5 prot 31.1 23 0.00078 25.8 1.8 25 146-170 13-37 (62)
34 3a2a_A Voltage-gated hydrogen 30.7 21 0.00072 25.9 1.6 22 176-197 37-58 (58)
35 2a25_A Ubiquitin ligase SIAH1; 30.2 11 0.00036 30.8 -0.1 33 146-185 25-61 (193)
36 1gxq_A PHOB, phosphate regulon 29.6 28 0.00094 24.7 2.1 20 173-192 69-88 (106)
37 2khv_A Phage integrase; soluti 29.6 1.1E+02 0.0038 20.6 5.1 51 121-200 40-94 (106)
38 2kj5_A Phage integrase; GFT PS 28.7 99 0.0034 20.6 4.7 50 123-200 46-98 (116)
39 2hwv_A DNA-binding response re 28.2 24 0.00084 26.1 1.6 20 174-193 82-101 (121)
40 2c7n_A Rabex-5, GEF 1, RAB gua 28.1 20 0.00067 27.1 1.1 24 148-171 18-41 (74)
41 1z1b_A Integrase; protein-DNA 26.9 88 0.003 25.1 4.8 63 107-200 102-166 (356)
42 3q9v_A DNA-binding response re 24.0 51 0.0018 25.0 2.8 20 174-193 99-118 (133)
43 2kj9_A Integrase; DNA_BRE_C su 23.2 1.2E+02 0.004 21.1 4.4 50 123-199 50-101 (118)
44 2kob_A Uncharacterized protein 22.9 1E+02 0.0034 20.2 3.8 29 172-200 62-92 (108)
45 2dkz_A Hypothetical protein LO 22.6 42 0.0014 25.7 2.0 21 120-140 10-30 (84)
46 3oj3_I Tumor necrosis factor a 21.0 29 0.00099 24.5 0.8 21 146-166 19-39 (49)
47 3qfs_A CPR, P450R, NADPH--cyto 20.7 43 0.0015 30.8 2.1 46 129-174 108-153 (458)
48 2osa_A N-chimaerin; RHO-GAP, G 20.3 77 0.0026 25.1 3.2 38 174-212 50-94 (202)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=88.78 E-value=0.68 Score=36.20 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=52.2
Q ss_pred hhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHH
Q 025815 104 QKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRL 183 (247)
Q Consensus 104 QKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRL 183 (247)
.-+++|+.|..|+.+.. +.+...+..||.+|+.++-..| .+..++...+..|
T Consensus 25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l 76 (324)
T 1xo0_A 25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence 44678899999998763 3466778999999999875322 2557889999999
Q ss_pred HHHHHHhCCC-CCCCccch
Q 025815 184 RAAYEENGGQ-PEINPFSA 201 (247)
Q Consensus 184 RAAfEE~GG~-PE~NPF~a 201 (247)
++.|+-.+.. +..||+..
T Consensus 77 ~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHH
Confidence 9999987643 34688754
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=82.77 E-value=3.9 Score=28.83 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=47.0
Q ss_pred hhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 025815 106 RRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRA 185 (247)
Q Consensus 106 RrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRA 185 (247)
+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||+
T Consensus 33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~ 85 (117)
T 3nrw_A 33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 568888999987632 12566778899999998874311 244677778888888
Q ss_pred HHHHh--CCCCCCCccc
Q 025815 186 AYEEN--GGQPEINPFS 200 (247)
Q Consensus 186 AfEE~--GG~PE~NPF~ 200 (247)
.|+-. -|--+.||+.
T Consensus 86 f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 86 WLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHcCCcccCHHH
Confidence 87643 2445688874
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=76.66 E-value=6.3 Score=30.25 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.7
Q ss_pred hhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHH
Q 025815 104 QKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRL 183 (247)
Q Consensus 104 QKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRL 183 (247)
.-++.++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-|
T Consensus 26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l 77 (290)
T 1a0p_A 26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence 4456788899999887 3467788899999999876431 12456788888999
Q ss_pred HHHHHHh--CCCCCCCccc
Q 025815 184 RAAYEEN--GGQPEINPFS 200 (247)
Q Consensus 184 RAAfEE~--GG~PE~NPF~ 200 (247)
++.|+.. -|..+.||+.
T Consensus 78 ~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHhCCCccCChhh
Confidence 9988754 2445689985
No 4
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=73.17 E-value=3 Score=41.01 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCcc-chhhHHHHHH----HhHHHHHhh
Q 025815 180 VGRLRAAYEENGGQP-------------------------EINPF-SARAVRLYLR----DVRDVQAEA 218 (247)
Q Consensus 180 IGRLRAAfEE~GG~P-------------------------E~NPF-~araVRlYLR----eVRd~QAKA 218 (247)
..-++.+++.++++| |.||| |.|.+|+||+ |+=++|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777764 78999 9999999998 555666554
No 5
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=66.96 E-value=6 Score=39.69 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.9
Q ss_pred CCCcc-chhhHHHHHH--HhHHHHHhhh
Q 025815 195 EINPF-SARAVRLYLR--DVRDVQAEAR 219 (247)
Q Consensus 195 E~NPF-~araVRlYLR--eVRd~QAKAR 219 (247)
|.||| |.|++|+||. |+=++|.+|-
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rAi 710 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRAI 710 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHHH
Confidence 67999 9999999998 7777887653
No 6
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=66.93 E-value=11 Score=25.27 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=43.3
Q ss_pred hhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 025815 107 RDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAA 186 (247)
Q Consensus 107 rDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAA 186 (247)
+.++.|..|+.+ +.+..-+..||.+|+.++.+ +.+..++...++.||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 344557777653 45677789999999987631 11446888899999999
Q ss_pred HHHh--CCCCCCCccc
Q 025815 187 YEEN--GGQPEINPFS 200 (247)
Q Consensus 187 fEE~--GG~PE~NPF~ 200 (247)
|+-. -|--+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9742 2334689984
No 7
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=66.50 E-value=15 Score=23.32 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=42.8
Q ss_pred hhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 025815 107 RDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAA 186 (247)
Q Consensus 107 rDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAA 186 (247)
..++.|..|+.+ +.+..-+..||.+|+.++...| +..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHH
Confidence 445556666643 4567778999999998764211 246788889999999
Q ss_pred HHH---hCCCCCCCccc
Q 025815 187 YEE---NGGQPEINPFS 200 (247)
Q Consensus 187 fEE---~GG~PE~NPF~ 200 (247)
|+- .|. -+.||+.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 873 344 4689985
No 8
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=66.05 E-value=3.8 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.1
Q ss_pred ccccccccccCCCccccCCCCCCCCC
Q 025815 141 DQFGKTKVHAQSCPLFGHAHAPAPCR 166 (247)
Q Consensus 141 DqfGKTKVH~~~C~ffG~p~ppapC~ 166 (247)
|+.|-.|--..+|+|||.|.-..=|+
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67788888999999999998777664
No 9
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=61.83 E-value=3.6 Score=31.38 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 025815 175 SLDALVGRLRAAYEENGGQPE 195 (247)
Q Consensus 175 SLDALIGRLRAAfEE~GG~PE 195 (247)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999998877654
No 10
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=60.46 E-value=18 Score=24.23 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=37.4
Q ss_pred CCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCcc
Q 025815 122 PLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEEN--GGQPEINPF 199 (247)
Q Consensus 122 PlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~--GG~PE~NPF 199 (247)
-+.+..-+..||.+|+.++-..| .+..++...++.||++|+.. -|--+.||+
T Consensus 47 ~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 47 SIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred ceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 45677788999999998764211 24568888999999999743 133457998
Q ss_pred c
Q 025815 200 S 200 (247)
Q Consensus 200 ~ 200 (247)
.
T Consensus 101 ~ 101 (117)
T 2kkp_A 101 E 101 (117)
T ss_dssp G
T ss_pred c
Confidence 4
No 11
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=58.69 E-value=15 Score=32.43 Aligned_cols=34 Identities=35% Similarity=0.615 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCC---------------------CCCCcc-chhhHHHHHHH
Q 025815 177 DALVGRLRAAYEENGGQ---------------------PEINPF-SARAVRLYLRD 210 (247)
Q Consensus 177 DALIGRLRAAfEE~GG~---------------------PE~NPF-~araVRlYLRe 210 (247)
+...--++.+++..+++ .|.||| |.|+||+||.+
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 34444666777776665 267998 99999999984
No 12
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=58.37 E-value=4.8 Score=28.37 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQP 194 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~P 194 (247)
.+||..|.|||..+++.|+.+
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998876543
No 13
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=57.64 E-value=8.9 Score=38.60 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.9
Q ss_pred CCCCcc-chhhHHHHHH--HhHHHHHhh
Q 025815 194 PEINPF-SARAVRLYLR--DVRDVQAEA 218 (247)
Q Consensus 194 PE~NPF-~araVRlYLR--eVRd~QAKA 218 (247)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 689 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARA 689 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHH
Confidence 589999 8999999998 788888776
No 14
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=55.42 E-value=5.5 Score=29.23 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQP 194 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~P 194 (247)
.+||..|.|||..+++.|+.+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 489999999999998876543
No 15
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=53.70 E-value=20 Score=27.43 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred hhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHH
Q 025815 105 KRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLR 184 (247)
Q Consensus 105 KRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLR 184 (247)
-++.++.|..|+.+. .+..-+..||.+|+.++-..| +..++...++-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 345677888888653 566778999999998875321 2357888889999
Q ss_pred HHHHHhC--CCCCCCccc
Q 025815 185 AAYEENG--GQPEINPFS 200 (247)
Q Consensus 185 AAfEE~G--G~PE~NPF~ 200 (247)
++|+..- |.-+.||+.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988531 344689974
No 16
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=53.32 E-value=9.8 Score=38.29 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.9
Q ss_pred CCCCcc-chhhHHHHHH--HhHHHHHhh
Q 025815 194 PEINPF-SARAVRLYLR--DVRDVQAEA 218 (247)
Q Consensus 194 PE~NPF-~araVRlYLR--eVRd~QAKA 218 (247)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 682 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRA 682 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHH
Confidence 589999 8999999998 888888776
No 17
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=53.17 E-value=16 Score=34.97 Aligned_cols=42 Identities=33% Similarity=0.500 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhhHHHHHH--HhHHHHHh
Q 025815 176 LDALVGRLRAAYEENGGQ---------------------PEINPF-SARAVRLYLR--DVRDVQAE 217 (247)
Q Consensus 176 LDALIGRLRAAfEE~GG~---------------------PE~NPF-~araVRlYLR--eVRd~QAK 217 (247)
.+....-++.+++.++|+ .|.||| |.|+||++|. ++=+.|.+
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~Qlr 377 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLR 377 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHH
Confidence 455666677777777665 378998 8999999995 44444443
No 18
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=50.21 E-value=58 Score=22.27 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH--
Q 025815 112 FMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE-- 189 (247)
Q Consensus 112 f~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE-- 189 (247)
+..|+.....-+.|..-+..||.+|+..+...| +..++...+.-||++|+-
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 333443333345677788999999998653211 345788899999999874
Q ss_pred -hCCCCCCCccc
Q 025815 190 -NGGQPEINPFS 200 (247)
Q Consensus 190 -~GG~PE~NPF~ 200 (247)
.|. -+.||+.
T Consensus 88 ~~~~-i~~NP~~ 98 (121)
T 2kkv_A 88 QNDY-IDSNPAS 98 (121)
T ss_dssp HTTS-SCSCSCS
T ss_pred HcCC-cccCcHH
Confidence 343 4689974
No 19
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=49.24 E-value=53 Score=22.56 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=35.9
Q ss_pred CccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 025815 123 LALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEEN--GGQPEINPFS 200 (247)
Q Consensus 123 lsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~--GG~PE~NPF~ 200 (247)
+.|..-+..||.+|+..+...| +..++..+++-||++|+-. -|.-+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778999999998653211 3457888999999998742 2334689973
No 20
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=49.22 E-value=4.1 Score=31.52 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=9.2
Q ss_pred HHhhhcccchhhhhcc
Q 025815 215 QAEARGMIGYDQKKTR 230 (247)
Q Consensus 215 QAKARg~i~y~kKkrk 230 (247)
..|.-| |.|.+||||
T Consensus 39 l~KGLG-IsYgRkkRr 53 (86)
T 3mi9_C 39 ITKALG-ISYGRKKRR 53 (86)
T ss_dssp HHTTSC-CCSCC----
T ss_pred cccCCc-ccccccccc
Confidence 468899 999877664
No 21
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=48.12 E-value=58 Score=21.65 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=36.3
Q ss_pred CccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 025815 123 LALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE---NGGQPEINPF 199 (247)
Q Consensus 123 lsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PE~NPF 199 (247)
+.+..-+..||.+|+.++.+ +.+..++...+..||++|+- .|. -+.||+
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~-i~~nP~ 90 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRL-IKAMPS 90 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTS-CSCCTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCC-hhhCcc
Confidence 45677789999999987641 12446788899999999874 343 568998
Q ss_pred c
Q 025815 200 S 200 (247)
Q Consensus 200 ~ 200 (247)
.
T Consensus 91 ~ 91 (111)
T 2kiw_A 91 E 91 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 22
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=47.30 E-value=31 Score=23.32 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=37.3
Q ss_pred CCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCCCc
Q 025815 122 PLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE---NGGQPEINP 198 (247)
Q Consensus 122 PlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PE~NP 198 (247)
-+.+...+..||.+|+.++-..| .+..++...++.||++|+- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35677888999999998764311 2456788899999999874 343 45799
Q ss_pred cc
Q 025815 199 FS 200 (247)
Q Consensus 199 F~ 200 (247)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 23
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=46.84 E-value=19 Score=34.54 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhhHHHHHHH
Q 025815 176 LDALVGRLRAAYEENGGQ---------------------PEINPF-SARAVRLYLRD 210 (247)
Q Consensus 176 LDALIGRLRAAfEE~GG~---------------------PE~NPF-~araVRlYLRe 210 (247)
.+...--.+.+++.++|+ .|.||| |.|+||++|..
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~ 366 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMDR 366 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeecccC
Confidence 455666677778877665 378998 99999999973
No 24
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=44.20 E-value=11 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHhC
Q 025815 174 GSLDALVGRLRAAYEENG 191 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~G 191 (247)
.+||..|.|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998776
No 25
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=41.95 E-value=5.6 Score=30.76 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.5
Q ss_pred HHhhhcccchhhhhcc
Q 025815 215 QAEARGMIGYDQKKTR 230 (247)
Q Consensus 215 QAKARg~i~y~kKkrk 230 (247)
+.|.-| |.|.+||||
T Consensus 39 ~~KGLG-IsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLG-ISYGRKKRR 53 (86)
T ss_dssp SSTTSS-SSSCCCSGG
T ss_pred ccCCCc-eEecccccc
Confidence 357789 999888764
No 26
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=40.34 E-value=22 Score=23.93 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=36.5
Q ss_pred CccccCcchhhhHHhhhhcc-ccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCCCc
Q 025815 123 LALSRCSGAHVLEFLKYLDQ-FGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE---NGGQPEINP 198 (247)
Q Consensus 123 lsLs~Csg~hVleFLrylDq-fGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PE~NP 198 (247)
+.+...+..+|.+|+.|+-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999988753 22 2346888899999999874 344 45688
Q ss_pred cc
Q 025815 199 FS 200 (247)
Q Consensus 199 F~ 200 (247)
+.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 27
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=37.81 E-value=23 Score=26.03 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=18.4
Q ss_pred hchhHHHHHHHHHHHHHhCCCC
Q 025815 173 WGSLDALVGRLRAAYEENGGQP 194 (247)
Q Consensus 173 WGSLDALIGRLRAAfEE~GG~P 194 (247)
-.+||..|.|||..+++.|..|
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~~ 100 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQP 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHHHHHhhcCCCCC
Confidence 3589999999999999877543
No 28
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=37.22 E-value=30 Score=35.26 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCcc-chhhHHHHHH--HhHHHHHhh
Q 025815 175 SLDALVGRLRAAYEENGGQPEINPF-SARAVRLYLR--DVRDVQAEA 218 (247)
Q Consensus 175 SLDALIGRLRAAfEE~GG~PE~NPF-~araVRlYLR--eVRd~QAKA 218 (247)
+.|.++.++. ..-|.||| |.|++|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~-------~~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVN-------ALHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHH-------SSCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhc-------CCCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 4677766654 24689999 9999999996 566777765
No 29
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=35.16 E-value=17 Score=25.88 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQ 193 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~ 193 (247)
.+||..|.|||..+++.++.
T Consensus 68 ~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 68 NVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp THHHHHHHHHHHHTTTTSCC
T ss_pred chHHHHHHHHHHHhccccCC
Confidence 58999999999999877543
No 30
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=34.16 E-value=16 Score=26.04 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQ 193 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~ 193 (247)
.+||..|.|||..+++.|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 58999999999999877654
No 31
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=34.04 E-value=27 Score=23.98 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=17.6
Q ss_pred hchhHHHHHHHHHHHHHhCCCCCCCc
Q 025815 173 WGSLDALVGRLRAAYEENGGQPEINP 198 (247)
Q Consensus 173 WGSLDALIGRLRAAfEE~GG~PE~NP 198 (247)
-|.=..||-||.++.++.|+.++..|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998887665
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.93 E-value=8.6 Score=34.04 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCCCccchhhHHHHHHHhHHHHHhhhcccch
Q 025815 192 GQPEINPFSARAVRLYLRDVRDVQAEARGMIGY 224 (247)
Q Consensus 192 G~PE~NPF~araVRlYLReVRd~QAKARg~i~y 224 (247)
+.++.+| -|=.-|.=.+ | -| |.|
T Consensus 310 ~~~~~~~-------~~~~~~~~~~-~-~~-~~~ 332 (358)
T 2pk2_A 310 GGQEARP-------NYHCQLCFLR-S-LG-IDY 332 (358)
T ss_dssp ---------------------------------
T ss_pred CCCCCcc-------ceecHHHhcc-c-cc-eee
Confidence 3356666 3444444444 6 99 999
No 33
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=31.06 E-value=23 Score=25.79 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=19.4
Q ss_pred cccccCCCccccCCCCCCCCCCchh
Q 025815 146 TKVHAQSCPLFGHAHAPAPCRCPMM 170 (247)
Q Consensus 146 TKVH~~~C~ffG~p~ppapC~CPLR 170 (247)
..+=..+|.|||.|..-..|.-=+|
T Consensus 13 ~~lC~ngCGFfGnpaT~nlCSkCyr 37 (62)
T 2kzy_A 13 PMLCSTGCGFYGNPRTNGMCSVCYK 37 (62)
T ss_dssp CCBCTTCCSSBCCTTTTSCCHHHHH
T ss_pred ccchhhCCCCcCChhhcCcCHHHHH
Confidence 3456789999999999999974444
No 34
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.71 E-value=21 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 025815 176 LDALVGRLRAAYEENGGQPEIN 197 (247)
Q Consensus 176 LDALIGRLRAAfEE~GG~PE~N 197 (247)
-|-=|+||++...+||.-+|-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999888765
No 35
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=30.24 E-value=11 Score=30.83 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=16.4
Q ss_pred cccccCCCccccCCCCCCCCCCchh----hhhchhHHHHHHHHH
Q 025815 146 TKVHAQSCPLFGHAHAPAPCRCPMM----QAWGSLDALVGRLRA 185 (247)
Q Consensus 146 TKVH~~~C~ffG~p~ppapC~CPLR----QAWGSLDALIGRLRA 185 (247)
-..|...|.|. ||.||.. .--|+.+.|..-|+.
T Consensus 25 ~~~He~~C~f~-------p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 25 KADHEELCEFR-------PYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred ccchhhcCCCC-------CccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 34699999775 7777763 122899999999985
No 36
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=29.63 E-value=28 Score=24.72 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.0
Q ss_pred hchhHHHHHHHHHHHHHhCC
Q 025815 173 WGSLDALVGRLRAAYEENGG 192 (247)
Q Consensus 173 WGSLDALIGRLRAAfEE~GG 192 (247)
-.+||..|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987754
No 37
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=29.57 E-value=1.1e+02 Score=20.57 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=35.1
Q ss_pred CCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCC-
Q 025815 121 PPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE---NGGQPEI- 196 (247)
Q Consensus 121 PPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PE~- 196 (247)
.-+.|..-+..||.+|+..+-..| + .++..+.+.|+++|+. .|. -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 456677788999999987432111 1 5788888999999874 454 356
Q ss_pred Cccc
Q 025815 197 NPFS 200 (247)
Q Consensus 197 NPF~ 200 (247)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 38
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=28.66 E-value=99 Score=20.64 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=34.0
Q ss_pred CccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 025815 123 LALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEE---NGGQPEINPF 199 (247)
Q Consensus 123 lsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PE~NPF 199 (247)
+.+..-+..||.+|+.++... .+..++...++.||++|+- .| --+.||+
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~ 97 (116)
T 2kj5_A 46 LKVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPA 97 (116)
T ss_dssp SBSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGG
T ss_pred CcHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCch
Confidence 345666788999998765321 1346788888999998873 34 3468997
Q ss_pred c
Q 025815 200 S 200 (247)
Q Consensus 200 ~ 200 (247)
.
T Consensus 98 ~ 98 (116)
T 2kj5_A 98 A 98 (116)
T ss_dssp G
T ss_pred h
Confidence 3
No 39
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=28.17 E-value=24 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQ 193 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~ 193 (247)
.+||..|.|||..+++.|..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876654
No 40
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=28.12 E-value=20 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=18.8
Q ss_pred cccCCCccccCCCCCCCCCCchhh
Q 025815 148 VHAQSCPLFGHAHAPAPCRCPMMQ 171 (247)
Q Consensus 148 VH~~~C~ffG~p~ppapC~CPLRQ 171 (247)
+=..+|.|||.|..-..|.-=.|.
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHHH
Confidence 345799999999999999755543
No 41
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=26.90 E-value=88 Score=25.05 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.9
Q ss_pred hhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 025815 107 RDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAA 186 (247)
Q Consensus 107 rDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAA 186 (247)
+.++.|..|+.+ +.+..-+..||.+|+.++-..| +..++...+..|+++
T Consensus 102 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 150 (356)
T 1z1b_A 102 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 150 (356)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHH
Confidence 345566666653 4566778999999998764321 235778888999999
Q ss_pred HHHh--CCCCCCCccc
Q 025815 187 YEEN--GGQPEINPFS 200 (247)
Q Consensus 187 fEE~--GG~PE~NPF~ 200 (247)
|+-. -|.-+.||+.
T Consensus 151 ~~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 151 FREAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHHTTSCSSCTTT
T ss_pred HHHHHHcCCcccChHh
Confidence 8843 2344579974
No 42
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=24.04 E-value=51 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 025815 174 GSLDALVGRLRAAYEENGGQ 193 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~ 193 (247)
.+||.+|.|||..+++.|..
T Consensus 99 ~~l~~~I~rLRkkL~~~~~~ 118 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDGY 118 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 47999999999999988753
No 43
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=23.16 E-value=1.2e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=33.5
Q ss_pred CccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCcc
Q 025815 123 LALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEEN--GGQPEINPF 199 (247)
Q Consensus 123 lsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~--GG~PE~NPF 199 (247)
+.|..-+..||.+|+..+...| +..++..+.+.|+++|+-. -|.-+.||+
T Consensus 50 ~~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 50 KDIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CCHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 3466778889998887542111 2357888899999998742 234468886
No 44
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=22.90 E-value=1e+02 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred hhchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 025815 172 AWGSLDALVGRLRAAYEEN--GGQPEINPFS 200 (247)
Q Consensus 172 AWGSLDALIGRLRAAfEE~--GG~PE~NPF~ 200 (247)
+..++...+..||++|+-. -|--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888899999998742 2335689974
No 45
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.64 E-value=42 Score=25.71 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred CCCCccccCcchhhhHHhhhh
Q 025815 120 RPPLALSRCSGAHVLEFLKYL 140 (247)
Q Consensus 120 rPPlsLs~Csg~hVleFLryl 140 (247)
.||..|+.=|-.+|.+|||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999854
No 46
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=21.00 E-value=29 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=16.0
Q ss_pred cccccCCCccccCCCCCCCCC
Q 025815 146 TKVHAQSCPLFGHAHAPAPCR 166 (247)
Q Consensus 146 TKVH~~~C~ffG~p~ppapC~ 166 (247)
+.--..+|.|||.|..-.-|.
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CS 39 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCT 39 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCH
T ss_pred cccccCCCCCccCcccCCcch
Confidence 444458999999998777775
No 47
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=20.70 E-value=43 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=28.6
Q ss_pred cchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhc
Q 025815 129 SGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWG 174 (247)
Q Consensus 129 sg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWG 174 (247)
..+.|-+||..+.-.+.+.|-.....--.....|.||+|.+|++-.
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l~ 153 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 153 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHHH
Confidence 3556888888887777776644332211223457788888887643
No 48
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=20.25 E-value=77 Score=25.06 Aligned_cols=38 Identities=24% Similarity=0.500 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCC------CCcc-chhhHHHHHHHhH
Q 025815 174 GSLDALVGRLRAAYEENGGQPE------INPF-SARAVRLYLRDVR 212 (247)
Q Consensus 174 GSLDALIGRLRAAfEE~GG~PE------~NPF-~araVRlYLReVR 212 (247)
|+. +-|-.||..|++.|...+ .++. .+..++.||||.-
T Consensus 50 g~~-~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 50 GFS-DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp CCH-HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred CcH-HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 444 357889999998764322 1232 6889999999974
Done!