BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025817
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 120/207 (57%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
+KA AEF++ L+FV VGS I N ++ L P +V I++C G ++ V +I
Sbjct: 13 WKAVTAEFLAMLIFVLLSVGSTI--NWGGSENPL-PVDMVLISLCFGLSIATMVQCFGHI 69
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ D + G++A +AIGF V L A ++
Sbjct: 130 GNLTAGHGLLVELII--TFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYT 186
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 187 GASMNPARSFGPAVIMGNWENHWIYWV 213
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 118/207 (57%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
+KA AEF++ L+FV VGS I + +D +V I++C G ++ V +I
Sbjct: 52 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHI 108
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 168
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ D + G++A +AIGF V L A ++
Sbjct: 169 GNLTAGHGLLVELII--TFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYT 225
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 226 GASMNPARSFGPAVIMGNWENHWIYWV 252
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
+KA AEF++ L+FV VGS I N ++ L P +V I++C G ++ V +I
Sbjct: 13 WKAVTAEFLAMLIFVLLSVGSTI--NWGGSENPL-PVDMVLISLCFGLSIATMVQCFGHI 69
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ + G++A +AIGF V L A ++
Sbjct: 130 GNLTAGHGLLVELII--TFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYT 186
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 187 GASMNPARSFGPAVIMGNWENHWIYWV 213
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
+KA AEF++ L+FV +GS I + +D +V I++C G ++ V +I
Sbjct: 4 WKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVD---MVLISLCFGLSIATMVQCFGHI 60
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ + G+IA +AIGF V L A ++
Sbjct: 121 GNLTAGHGLLVELII--TFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYT 177
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 178 GASMNPARSFGPAVIMGNWENHWIYWV 204
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVA 71
++A +AEF++ +LF+F +GSA+ F+ T A D V +++ G ++
Sbjct: 11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQ 67
Query: 72 IGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVP 128
+ISG H+NPAVT GL L QI++L I Y IAQ +G+IVA+ +L +T L ++
Sbjct: 68 SVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLG 127
Query: 129 THNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 188
+ T LV V AT D ++ LG P+AIGF V L A
Sbjct: 128 LNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAI 186
Query: 189 PFSGGSMNPARSFGPAVASGNFQDNWIYWV 218
++G +NPARSFG +V + NFQD+WI+WV
Sbjct: 187 DYTGCGINPARSFGSSVITHNFQDHWIFWV 216
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A +AEF++T LFVF +GSA+ F + V +++ G ++ +I
Sbjct: 11 WRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHI 70
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXX 133
SG H+NPAVT GL L QI+I + Y IAQ +G+IVA+ +L +T L ++ ++
Sbjct: 71 SGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLA 130
Query: 134 XXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG 193
T LV V AT D ++ LG AP+AIG V L A ++G
Sbjct: 131 DGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGC 189
Query: 194 SMNPARSFGPAVASGNFQDNWIYWV 218
+NPARSFG AV + NF ++WI+WV
Sbjct: 190 GINPARSFGSAVITHNFSNHWIFWV 214
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA G
Sbjct: 27 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 84
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
+FV V A ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 85 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 145 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 203
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 204 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA G
Sbjct: 50 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 107
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
+FV V A ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 108 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 167
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 168 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 226
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 227 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA G
Sbjct: 27 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 84
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
+FV V A ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 85 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 145 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 203
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 204 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA G
Sbjct: 50 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 107
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
+FV V A ISGGH+NPAVTFGL L ++ +L + Y IAQ LG+I L+K G
Sbjct: 108 IFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP 167
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 168 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 226
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 227 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA G
Sbjct: 46 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 103
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
+FV V A ISGGH+NPAVTFGL L ++ +L + Y IAQ LG+I L+K G
Sbjct: 104 IFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP 163
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 164 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 222
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 223 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 266
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ G AL V +I
Sbjct: 10 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 123 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWV 206
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ G AL V +I
Sbjct: 6 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 118
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 119 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 175
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 176 GAGMNPARSFAPAILTRNFTNHWVYWV 202
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ G AL V +I
Sbjct: 4 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 116
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 117 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 173
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 174 GAGMNPARSFAPAILTRNFTNHWVYWV 200
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A AEF ++L +VF G+G+++ + A P ++ +A+ G AL V +I
Sbjct: 10 WRAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 123 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWV 206
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 20/218 (9%)
Query: 9 DDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFA 65
+ S+ KA AEF++TL+FVF G+GSA+ + PS L + IA+ G A
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQIALAFGLA 53
Query: 66 L-FVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG 124
+ +A A+G +SGGH+NPA+T L +G QI++L FY AQL+G+I + +L V
Sbjct: 54 IGTLAQALGP-VSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPL 112
Query: 125 LA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVG 181
A + + TF L ++A+ + +G+ A ++IG V
Sbjct: 113 NARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVT 171
Query: 182 ANILAAGPFSGGSMNPARSFGPAVASGNFQD-NWIYWV 218
L F+G SMNPARSFGPAV F +W++WV
Sbjct: 172 LGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWV 209
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 5/205 (2%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNK--MTADAALDPSGLVAIAICHGFALFVAVAIGA 74
F A EF+ T LF+++ A N+ T D +P+ L+ I+ GF + V V I
Sbjct: 45 FIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITY 104
Query: 75 NISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXX 134
+SGG++NPAVT L L I GI Q++ + A+ +T G +
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGG 164
Query: 135 XXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 194
T L TV A + + + AP IG + L ++G
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYTGAG 222
Query: 195 MNPARSFGPAVASGNFQD-NWIYWV 218
+NPARSFGPAVA+ +F + +WIYW+
Sbjct: 223 LNPARSFGPAVAARSFPNYHWIYWL 247
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 94/224 (41%), Gaps = 31/224 (13%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL-------------VAIAICHGF 64
K +AEFI T + VF G GSA A M A P+ VAI + GF
Sbjct: 6 KRCIAEFIGTFILVFFGAGSA-AVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGF 64
Query: 65 ALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL------ 118
A+ ++ NISG H+NPAVT GL + + Y IAQLLG+ SF+
Sbjct: 65 AIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124
Query: 119 -KVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPK--KGSLGTIAPIA 175
GGL TF L+ T+ A D + KG G I
Sbjct: 125 GAATVGGLGATAP--FPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII---- 178
Query: 176 IGFIVGANILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
IG V I G SG S+NPAR+FGP + F D W Y+
Sbjct: 179 IGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYY 222
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
++A LAE + T L + +G A+ P G I I G + + NI
Sbjct: 144 WQAMLAEVVGTFLLMITIMGIAVDERA--------PKGFAGIII--GLTVAGIITTLGNI 193
Query: 77 SGGHVNPAVTFGLALGGQITILTGIF-----YWIAQLLGSIVASFLLKVVT 122
SG +NPA TFG L I T ++ Y I ++G+++A+ + +T
Sbjct: 194 SGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLT 244
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAV----LAAGFPELGIGFAGVALAFGLTVLTMAFAVG-H 56
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 57 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 116
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 117 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 175
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 176 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAV----LAAGFPALGIGFAGVALAWGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAV----LAAGFPELGIGFAGVALAFGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAV----LAAGFPELGIGFAGVALAFGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIGL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAV----LAAGFPELGIGFAGVALAWGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIGL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAV----LAAGFPELGIGFAGVALAFGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG + L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 92/214 (42%), Gaps = 19/214 (8%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGAN 75
F+ AE T VF G GSA+ + A G +A+ G L +A A+G +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAV----LAAGFPELGIGFAGVALAFGLTVLTMAFAVG-H 59
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------GL 125
ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL 185
A + + + A K G APIAIG L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLACTLIHL 178
Query: 186 AAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
+ P + S+NPARS A+ G + + W +W
Sbjct: 179 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 83/204 (40%), Gaps = 21/204 (10%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVA-----------IAICHGFAL 66
K + AE + T + VF G G+A+ M A+ A P+ AI FAL
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAV-ITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFAL 65
Query: 67 FVAVAIGA--NISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG 124
+A I + ISG H+NPAVT L G+ + Y +AQ +G+ + S L G
Sbjct: 66 AIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGP 125
Query: 125 LAVPTHNXXXXXX-----XXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFI 179
A TF L+ + A D + A + IG
Sbjct: 126 AAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPP--GFAGLVIGLT 183
Query: 180 VGANILAAGPFSGGSMNPARSFGP 203
VG I G +G S+NPAR+FGP
Sbjct: 184 VGGIITTIGNITGSSLNPARTFGP 207
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 10 DSFSLGSFKAYLAEFISTLLFVFAGVGSAI---AFNKMTADAALDPSGLVAIAICHGFA- 65
S+ +G + LAEF T VF G GSA+ AF ++ G +A+ G
Sbjct: 25 QSYVMG--RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGI-------GFTGVALAFGLTV 75
Query: 66 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL 125
L +A A+G ISGGH NPAV+ GL + G+ + + Y IAQ+ G+IVA+ L V+ G
Sbjct: 76 LTMAYAVG-GISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGK 134
Query: 126 A-----------VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPI 174
A H+ F L+ + +T G API
Sbjct: 135 AGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG----FAPI 190
Query: 175 AIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYWV 218
AIG + L + P + S+NPARS G A+ G + Q W++W+
Sbjct: 191 AIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWL 236
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 21 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGH 80
+AEF+ T L +F GVG A A A+ G I++ G + +A+ + A +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALK--VAGASF---GQWEISVIFGLGVAMAIYLTAGVSGAH 66
Query: 81 VNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL---------------KVVTGGL 125
+NPAVT L L I + ++Q+ G+ A+ L+ +V G +
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYT------VYATAADPKKGSLGTIAPIAIGFI 179
+V T + A D G +AP+ IG +
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 180 VGANILAAGPFSGGSMNPARSFGPAV 205
+ + GP +G +MNPAR FGP V
Sbjct: 187 IAVIGASMGPLTGTAMNPARDFGPKV 212
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 26/206 (12%)
Query: 21 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGH 80
+AEF+ T L +F GVG A A G I++ G + +A+ + A +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGAS-----FGQWEISVIWGLGVAMAIYLTAGVSGAH 66
Query: 81 VNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL---------------KVVTGGL 125
+NPAVT L L I + ++Q+ G+ A+ L+ +V G +
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYT------VYATAADPKKGSLGTIAPIAIGFI 179
+V T + A D G +AP+ IG +
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 180 VGANILAAGPFSGGSMNPARSFGPAV 205
+ + GP +G +MNPAR FGP V
Sbjct: 187 IAVIGASMGPLTGFAMNPARDFGPKV 212
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNK--MTADAALDPSGLVAIAICHGFALFVAVAIGAN 75
+ ++ EF+ T + +F G G+ F+ ++ D + + G A+F + + A
Sbjct: 11 REFIGEFLGTFVLMFLGEGATANFHTTGLSGD-------WYKLCLGWGLAVFFGILVSAK 63
Query: 76 ISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVAS 115
+SG H+N AV+ GL+ + + Y+ AQLLG+ V +
Sbjct: 64 LSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 277 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 318
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,408,160
Number of Sequences: 62578
Number of extensions: 228220
Number of successful extensions: 651
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 57
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)