BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025818
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 61 VQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIANEEGFR 119
++ LAGG+A A SKT AP+ R+ +L QVQ ++A + I+ RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 120 AFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGM 179
+FW+GNL + P ++NF + YK G+D H++ G + GG AG
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG--GVDRHKQFWRYFAG-NLASGGAAGA 124
Query: 180 TAASATYPLDLVRTRL-------AAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATL 231
T+ YPLD RTRL AAQR+ + G+ + I + +G GLY+G ++
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQRE---FTGLGNCITKIFKSDGLRGLYQGFNVSV 180
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 19/195 (9%)
Query: 63 QLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDL----AALSKPSILREASRIANEEGF 118
+ L G A + T PL + Q+QG L A+ +L + EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 119 RAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAG 178
R+ + G + + ++ ++SV Y+ K F + S +G + G G
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT--------KGSEHAGIGSRLLAGSTTG 115
Query: 179 MTAASATYPLDLVRTRLAAQRQA---IYYKGIWHSFQTICREEGFLGLYKGLGATL---- 231
A + P D+V+ R AQ +A Y+ +++TI REEG GL+KG +
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 232 LVRAIKLESYYLLSS 246
+V +L +Y L+
Sbjct: 176 IVNCAELVTYDLIKD 190
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 59 GTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGF 118
G +LLAG GA + P + + FQ Q S + IA EEG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--GGRRYQSTVEAYKTIAREEGI 160
Query: 119 RAFWKGNLVTIAHRLPYSSVNFYCYEHYKN-FLQSVLGLDNHRESASVNLGVHFVGGGLA 177
R WKG +A + Y+ K+ L++ L D +L HF A
Sbjct: 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD--------DLPCHFTSAFGA 212
Query: 178 GMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLL 232
G P+D+V+TR Y+ H T+ R+EG YKG + L
Sbjct: 213 GFCTTVIASPVDVVKTRYMNSALGQYHSA-GHCALTMLRKEGPRAFYKGFMPSFL 266
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 167 LGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---------AIYYKGIWHSFQTICRE 217
+ V F+G G A A T+PLD + RL Q + + Y+G+ + T+ R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 218 EGFLGLYKGLGATL 231
EG LY GL A L
Sbjct: 61 EGPRSLYNGLVAGL 74
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 100 LSKPSILREASRIANEEGFRAFWKGNLVTI 129
L +P L E+ R+ +EEGFR+F+ G+L I
Sbjct: 183 LKQPD-LAESFRLXSEEGFRSFYDGSLADI 211
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4ECE|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4GKA|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
Length = 324
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEYLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
Length = 324
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEYLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
Length = 324
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g
Mutant
pdb|2OC9|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257g With Imm-H
Length = 289
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
Mutant
pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257d With Imm-H
Length = 289
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Inosine
pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Guanosine
pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
3-Deoxyguanosine
Length = 288
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 2 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 38
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Phosphate
pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Dadme-Immucillin-H And Sulfate
pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Sulfate
pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
Dadme-Immh And Phosphate
pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With L- Immucillin-H
pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
2-Mercapto(3h) Quinazolinone
pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Serme-Immucillin H
pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With 7-Deazaguanine
Length = 289
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
Length = 311
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 25 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 61
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
Mutant
pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257f With Imm-H
Length = 289
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|3QQ2|A Chain A, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|B Chain B, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|C Chain C, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
Length = 284
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 145 HYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLD 189
H + + Q+V GL+ + G + GGL G T A TYP D
Sbjct: 38 HARAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGD 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,431,476
Number of Sequences: 62578
Number of extensions: 237113
Number of successful extensions: 694
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 20
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)