Query 025818
Match_columns 247
No_of_seqs 180 out of 1418
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 8.5E-41 2.9E-45 282.2 11.7 215 9-246 57-280 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.3E-39 8E-44 272.6 17.4 187 57-246 4-195 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.2E-40 1.4E-44 277.2 12.0 219 9-246 60-291 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.8E-38 9.4E-43 266.8 14.3 176 63-246 4-186 (303)
5 3f2e_A SIRV coat protein; four 34.7 19 0.00066 22.8 1.7 34 202-235 6-43 (100)
6 2acm_A Mucin-1; auto-catalytic 25.5 20 0.00068 21.5 0.6 20 103-122 40-59 (66)
7 3tgu_G UQCRQ, mitochondrial ub 17.3 54 0.0018 21.0 1.4 27 220-246 34-60 (81)
8 1y9i_A Low temperature require 12.9 2.3E+02 0.0077 21.1 3.9 48 134-183 111-158 (178)
9 3cx5_H Cytochrome B-C1 complex 11.0 1.6E+02 0.0053 19.4 2.3 29 218-246 42-70 (93)
10 1pc2_A Mitochondria fission pr 10.2 1.7E+02 0.006 21.0 2.6 36 188-223 91-126 (152)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.5e-41 Score=282.16 Aligned_cols=215 Identities=24% Similarity=0.297 Sum_probs=177.6
Q ss_pred EEeccchhhccccccc---------ccchhHHhhhcCCCCCCCCCCCCccccccccCccchHHHHHHHHHHHHHHHhhhc
Q 025818 9 VVVEGGQRALNTAHSS---------VVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTA 79 (247)
Q Consensus 9 ~~~~gg~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~~~~~~~ 79 (247)
++.++|.+.++++... ...+..|+.++....+. .+..+.+..+++|++||+++.++++
T Consensus 57 i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~-------------~~~~~~~~~~~ag~~ag~~~~~~~~ 123 (303)
T 2lck_A 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-------------SEHAGIGSRLLAGSTTGALAVAVAQ 123 (303)
T ss_dssp HHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCC-------------CSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CcCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4457788888887622 23344444444221111 0124577899999999999999999
Q ss_pred hHHHHHHHHHhcccccccccCCCccHHHHHHHHHHhhcccccccchhhhhhcccccccchHhhhHHHHHHHHhhhcCCCc
Q 025818 80 PLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNH 159 (247)
Q Consensus 80 Pld~ik~rlQ~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~~~~~k~~~~~~~~~~~~ 159 (247)
|+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+...
T Consensus 124 Pld~vktrlq~~~~~~--~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---- 197 (303)
T 2lck_A 124 PTDVVKVRFQAQARAG--GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---- 197 (303)
T ss_dssp HHHHHHHHHHHSCSCC--CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS----
T ss_pred cHHHHHHHHhcccccC--CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence 9999999999986431 2346889999999999999999999999999999999999999999999998754221
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccCCcccCcHHHHHHHHHHhhCccccccchhhhHHHHHHHHH
Q 025818 160 RESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLVRAIKLE 239 (247)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~ 239 (247)
...+....+++|++||++++++++|+|+||+|||.+.. ..|+++++|+++|+++||++|||||+.|+++|.+|..+
T Consensus 198 ---~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~ 273 (303)
T 2lck_A 198 ---MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNV 273 (303)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHH
Confidence 12345678999999999999999999999999999865 35999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 025818 240 SYYLLSS 246 (247)
Q Consensus 240 i~~~~y~ 246 (247)
++|.+||
T Consensus 274 i~f~~ye 280 (303)
T 2lck_A 274 VMFVTYE 280 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999997
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-39 Score=272.61 Aligned_cols=187 Identities=30% Similarity=0.530 Sum_probs=161.5
Q ss_pred ccchHHHHHHHHHHHHHHHhhhchHHHHHHHHHhcccccc-cccCCCccHHHHHHHHHHhhcccccccchhhhhhccccc
Q 025818 57 QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPY 135 (247)
Q Consensus 57 ~~~~~~~~~aG~~ag~~~~~~~~Pld~ik~rlQ~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 135 (247)
..+.+..+++|++||+++.++++|+|+||+|+|++..... .....|+++++++++|+++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3567889999999999999999999999999999864321 123468899999999999999999999999999999999
Q ss_pred ccchHhhhHHHHHHHHhhhcCCCcCCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccC----CcccCcHHHHH
Q 025818 136 SSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSF 211 (247)
Q Consensus 136 ~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~----~~~~~~~~~~~ 211 (247)
.+++|++||.+|+.+..... ............+++|++||++++++++|+|+||+|+|++.. ...|+++++|+
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996543211 111112345678999999999999999999999999999853 34689999999
Q ss_pred HHHHHhhCccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 212 QTICREEGFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 212 ~~i~~~~G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
++|+++||++|||||+.++++|.+|+.+++|.+||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye 195 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYD 195 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.2e-40 Score=277.16 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=174.1
Q ss_pred EEeccchhhccccccc---------ccchhHHhhhcCCCCCCCCCCCCccccccccCccchHHHHHHHHHHHHHHHhhhc
Q 025818 9 VVVEGGQRALNTAHSS---------VVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTA 79 (247)
Q Consensus 9 ~~~~gg~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~~~~~~~ 79 (247)
++.++|.+.+|++... ...+..|+.++....... . .......+.+..+++|++||+++.++++
T Consensus 60 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~----~~~~~~~~~~~~~~ag~~ag~~~~~~~~ 131 (297)
T 1okc_A 60 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV----D----RHKQFWRYFAGNLASGGAAGATSLCFVY 131 (297)
T ss_dssp HHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C----TTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhcccc----C----cccchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457788899888622 334444554443110000 0 0011123457789999999999999999
Q ss_pred hHHHHHHHHHhcccccccccCCCccHHHHHHHHHHhhcccccccchhhhhhcccccccchHhhhHHHHHHHHhhhcCCCc
Q 025818 80 PLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNH 159 (247)
Q Consensus 80 Pld~ik~rlQ~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~~~~~k~~~~~~~~~~~~ 159 (247)
|+|+||+|+|++..... ....|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+.
T Consensus 132 Pld~vktrlq~~~~~~~-~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------ 204 (297)
T 1okc_A 132 PLDFARTRLAADVGKGA-AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------ 204 (297)
T ss_dssp HHHHHHHHHHHCCCSST-TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------
T ss_pred cHHHHHHHHhccccCCC-cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC------
Confidence 99999999999853221 23468899999999999999999999999999999999999999999999966321
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccC----CcccCcHHHHHHHHHHhhCccccccchhhhHHHHH
Q 025818 160 RESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSFQTICREEGFLGLYKGLGATLLVRA 235 (247)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~ 235 (247)
...+....+++|++||++++++++|+|+||+|||.+.. ...|+++++|+++|+++||++|||||+.|+++|.
T Consensus 205 ---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~- 280 (297)
T 1okc_A 205 ---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG- 280 (297)
T ss_dssp ---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-
T ss_pred ---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-
Confidence 11356678899999999999999999999999999753 2468999999999999999999999999999996
Q ss_pred HHHHHHHHHhc
Q 025818 236 IKLESYYLLSS 246 (247)
Q Consensus 236 ~~~~i~~~~y~ 246 (247)
+..+++|.+||
T Consensus 281 ~~~~~~f~~ye 291 (297)
T 1okc_A 281 MGGAFVLVLYD 291 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred ccceeeehHHH
Confidence 57899999997
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.8e-38 Score=266.79 Aligned_cols=176 Identities=25% Similarity=0.417 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHhcccccc----cccCCCccHHHHHHHHHHhhcccccccchhhhhhcccccccc
Q 025818 63 QLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD----LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSV 138 (247)
Q Consensus 63 ~~~aG~~ag~~~~~~~~Pld~ik~rlQ~~~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 138 (247)
.+++|++||+++.++++|+|+||+|+|++..... .....|+++++++++|+++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999864321 113468899999999999999999999999999999999999
Q ss_pred hHhhhHHHHHHHHhhhcCCCcCCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccC---CcccCcHHHHHHHHH
Q 025818 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---AIYYKGIWHSFQTIC 215 (247)
Q Consensus 139 ~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~---~~~~~~~~~~~~~i~ 215 (247)
+|++||.+|+.+.+.. + ..+....+++|++||+++.++++|+|+||+|+|++.. ...|+++++++++|+
T Consensus 84 ~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp TTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHH
Confidence 9999999999885321 1 2467788999999999999999999999999999863 347899999999999
Q ss_pred HhhCccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 216 REEGFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 216 ~~~G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
++||++|||||+.++++|.+|+.+++|.+||
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye 186 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYD 186 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=34.66 E-value=19 Score=22.78 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=24.6
Q ss_pred cccCcHHHHHHHHHHhhCc----cccccchhhhHHHHH
Q 025818 202 IYYKGIWHSFQTICREEGF----LGLYKGLGATLLVRA 235 (247)
Q Consensus 202 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~r~~ 235 (247)
++++++-+-+..++.+-|+ +.+|.||+..+.|.+
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4567777777778888886 568899988877753
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.50 E-value=20 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHhhcccccc
Q 025818 103 PSILREASRIANEEGFRAFW 122 (247)
Q Consensus 103 ~~~~~~~~~i~~~eG~~gly 122 (247)
+++...+.+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999886
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.34 E-value=54 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=18.3
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 220 FLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 220 ~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
+...+|-+.-.++..+|..++.+.+|+
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~ 60 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYS 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 334444555667788888888887763
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=12.85 E-value=2.3e+02 Score=21.09 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=27.8
Q ss_pred ccccchHhhhHHHHHHHHhhhcCCCcCCccchhhHHHHHHHHHHHHHHHH
Q 025818 134 PYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAAS 183 (247)
Q Consensus 134 ~~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 183 (247)
....+.|..||..|-..-++.... ........+-.+++|..|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~--~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEH--DGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCC--CSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcc--cCCCCcchHHHHHHHHHHHHHHHH
Confidence 456677888888886554433211 111223566677788777776533
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=11.02 E-value=1.6e+02 Score=19.39 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=22.3
Q ss_pred hCccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 218 EGFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 218 ~G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
+|+...+|-+.-.++..+|.+.+.+.+|+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~ 70 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWK 70 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHH
Confidence 46677777777888888888888887763
No 10
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=10.22 E-value=1.7e+02 Score=20.97 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccCCcccCcHHHHHHHHHHhhCcccc
Q 025818 188 LDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGL 223 (247)
Q Consensus 188 ~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~G~~gl 223 (247)
.+.+++-++.++.+.+-......+.+..+++|+.|+
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl~G~ 126 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGM 126 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555677777777777888889999999998765
Done!