Query 025818
Match_columns 247
No_of_seqs 180 out of 1418
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 18:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025818.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025818hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 7.7E-35 5.6E-39 242.1 17.4 188 56-246 2-194 (292)
2 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 4.2E-35 3E-39 243.7 15.4 179 58-247 109-291 (292)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 25.7 12 0.0009 22.1 1.2 28 219-246 33-60 (75)
4 d3cx5h1 f.23.13.1 (H:2-94) Ubi 21.6 27 0.002 21.5 2.3 29 218-246 42-70 (93)
5 d2b0ja1 a.100.1.11 (A:243-344) 16.8 1.1E+02 0.0084 18.7 7.6 72 63-148 17-90 (102)
6 d1yroa1 d.2.1.2 (A:1-123) alph 14.7 53 0.0039 21.2 2.6 23 206-229 87-109 (123)
7 d1h72c2 d.58.26.1 (C:168-300) 9.8 1.3E+02 0.0092 19.3 3.4 66 66-133 36-102 (133)
8 d1gd6a_ d.2.1.2 (A:) Lysozyme 9.8 68 0.0049 20.5 1.9 17 206-222 85-101 (119)
9 d1juga_ d.2.1.2 (A:) Lysozyme 7.0 1.1E+02 0.008 19.7 2.0 17 206-222 90-107 (125)
10 d1v54l_ f.23.6.1 (L:) Mitochon 6.9 1.8E+02 0.013 14.8 3.1 21 175-195 23-43 (46)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=7.7e-35 Score=242.08 Aligned_cols=188 Identities=30% Similarity=0.530 Sum_probs=166.3
Q ss_pred CccchHHHHHHHHHHHHHHHhhhchHHHHHHHHHhccccccc-ccCCCccHHHHHHHHHHhhcccccccchhhhhhcccc
Q 025818 56 AQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDL-AALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLP 134 (247)
Q Consensus 56 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~ik~rlQ~~~~~~~~-~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 134 (247)
++.++++.|++|++||+++.++++|||+||+|+|++...... ....++++++++++++++||+++||+|+.+.+++..+
T Consensus 2 ~~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~ 81 (292)
T d1okca_ 2 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 81 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhc
Confidence 346789999999999999999999999999999998754332 3567899999999999999999999999999999999
Q ss_pred cccchHhhhHHHHHHHHhhhcCCCcCCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccC----CcccCcHHHH
Q 025818 135 YSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHS 210 (247)
Q Consensus 135 ~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~----~~~~~~~~~~ 210 (247)
..+++|.+||.+++.+.+..... ++........+++|.+|++++.++++|+|++|+|+|.+.. ...+.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~ 158 (292)
T d1okca_ 82 TQALNFAFKDKYKQIFLGGVDRH---KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC 158 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHH
T ss_pred ccchhHHHHHHHHHHHhcccccc---cccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHH
Confidence 99999999999999988654322 2223456678899999999999999999999999999853 3467899999
Q ss_pred HHHHHHhhCccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 211 FQTICREEGFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 211 ~~~i~~~~G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
+++++++||+++||+|+.++++|.+|+.+++|..|+
T Consensus 159 ~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~ 194 (292)
T d1okca_ 159 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYD 194 (292)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhhhhccccccccceehHhhhhhhhcc
Confidence 999999999999999999999999999999999985
No 2
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=4.2e-35 Score=243.71 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=157.2
Q ss_pred cchHHHHHHHHHHHHHHHhhhchHHHHHHHHHhcccccccccCCCccHHHHHHHHHHhhcccccccchhhhhhccccccc
Q 025818 58 IGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSS 137 (247)
Q Consensus 58 ~~~~~~~~aG~~ag~~~~~~~~Pld~ik~rlQ~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 137 (247)
......+++|++|++++.++.+|+|++|+|+|.+..... ....+.+..+.+++++++||+++||+|+.+++++.+++.+
T Consensus 109 ~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~ 187 (292)
T d1okca_ 109 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA-AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccc-cccccccHHHHHHHhhhccchhhhhccccccccceehHhh
Confidence 345677999999999999999999999999999875433 3456789999999999999999999999999999999999
Q ss_pred chHhhhHHHHHHHHhhhcCCCcCCccchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhhccCC----cccCcHHHHHHH
Q 025818 138 VNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQA----IYYKGIWHSFQT 213 (247)
Q Consensus 138 ~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vktr~q~~~~~----~~~~~~~~~~~~ 213 (247)
++|..||.+|+.+.+ .........++++.+++++++++++|+|+||+|||.+... ..|++++||+++
T Consensus 188 ~~~~~~~~~k~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~ 258 (292)
T d1okca_ 188 AYFGVYDTAKGMLPD---------PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRK 258 (292)
T ss_dssp HHHHHHHHHHHSSCG---------GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHH
T ss_pred hhhhhccchhhhccc---------ccccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Confidence 999999999986532 2223567788999999999999999999999999998542 468899999999
Q ss_pred HHHhhCccccccchhhhHHHHHHHHHHHHHHhcC
Q 025818 214 ICREEGFLGLYKGLGATLLVRAIKLESYYLLSSA 247 (247)
Q Consensus 214 i~~~~G~~gly~G~~~~~~r~~~~~~i~~~~y~~ 247 (247)
|+++||++|||||+.|+++|.+| .++.|.+||.
T Consensus 259 i~~~eG~~~lyrG~~~~~~r~i~-~~i~~~~ye~ 291 (292)
T d1okca_ 259 IAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291 (292)
T ss_dssp HHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHhcCcCcccccHHHHHHHHHH-HHhhhhHhhc
Confidence 99999999999999999999766 6888999973
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.68 E-value=12 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=20.2
Q ss_pred CccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 219 GFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 219 G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
|+...+|-+.-.+++.+|...+.+.+|+
T Consensus 33 gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 33 GIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 4444555566778888999888888874
No 4
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.56 E-value=27 Score=21.46 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=24.5
Q ss_pred hCccccccchhhhHHHHHHHHHHHHHHhc
Q 025818 218 EGFLGLYKGLGATLLVRAIKLESYYLLSS 246 (247)
Q Consensus 218 ~G~~gly~G~~~~~~r~~~~~~i~~~~y~ 246 (247)
.|+...||-+.-.++..+|.+++.+.+|+
T Consensus 42 ~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~ 70 (93)
T d3cx5h1 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWK 70 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHhhhhhceEEcchHHHHHHHHH
Confidence 46777888888899999999999888874
No 5
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=16.78 E-value=1.1e+02 Score=18.68 Aligned_cols=72 Identities=17% Similarity=0.030 Sum_probs=50.8
Q ss_pred HHHHHHHHH--HHHHhhhchHHHHHHHHHhcccccccccCCCccHHHHHHHHHHhhcccccccchhhhhhcccccccchH
Q 025818 63 QLLAGGIAG--AFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNF 140 (247)
Q Consensus 63 ~~~aG~~ag--~~~~~~~~Pld~ik~rlQ~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 140 (247)
...+|.+.= +...++..|-|.+.- |+. -.++.+-.+.+++|+.|+-+-+.|-++-....+..+-
T Consensus 17 v~~agiL~Y~~~~t~IlgAP~~mie~--qa~------------etL~tma~L~e~~Gi~~m~kaldp~aL~~sa~sM~~~ 82 (102)
T d2b0ja1 17 TVYAGLLAYRDAVTKILGAPADFAQM--MAD------------EALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFG 82 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHH--HHH------------HHHHHHHHHHHHHCGGGHHHHSCGGGGGGTGGGGCSG
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHH--HHH------------HHHHHHHHHHHHhhHHHHHHhcCHHHHHhHHHhccch
Confidence 455666654 666788999997763 432 3566778889999999999999998887666666555
Q ss_pred hhhHHHHH
Q 025818 141 YCYEHYKN 148 (247)
Q Consensus 141 ~~~~~~k~ 148 (247)
-.-|.+-.
T Consensus 83 ~~~e~L~~ 90 (102)
T d2b0ja1 83 PLAEILPT 90 (102)
T ss_dssp GGTTHHHH
T ss_pred HHHHhHHH
Confidence 55444433
No 6
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.66 E-value=53 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHhhCccccccchhh
Q 025818 206 GIWHSFQTICREEGFLGLYKGLGA 229 (247)
Q Consensus 206 ~~~~~~~~i~~~~G~~gly~G~~~ 229 (247)
.-..|+++|++.+|+.+ |.++..
T Consensus 87 ddi~CAkkI~~~~G~~a-W~~w~~ 109 (123)
T d1yroa1 87 DDIACAKKILAIKGIDY-WKAYKP 109 (123)
T ss_dssp HHHHHHHHHHHHTCGGG-STTHHH
T ss_pred HHHHHHHHHHHHcCcch-hHHHHH
Confidence 34679999999999876 555543
No 7
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.81 E-value=1.3e+02 Score=19.27 Aligned_cols=66 Identities=8% Similarity=0.060 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhchHHHH-HHHHHhcccccccccCCCccHHHHHHHHHHhhcccccccchhhhhhccc
Q 025818 66 AGGIAGAFSKTCTAPLARL-TILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRL 133 (247)
Q Consensus 66 aG~~ag~~~~~~~~Pld~i-k~rlQ~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 133 (247)
.+-++.++..+.....|.+ +.-++ +....+.....++...++ ++.++.+++...-.|-+|+++.-+
T Consensus 36 ~~~~~~lv~al~~~d~~l~~~~~~~-D~l~Ep~r~~l~P~~~~i-k~~l~~ga~~~~lSGSGPTv~al~ 102 (133)
T d1h72c2 36 VGKACGMVYALYNKDKSLFGRYMMS-DKVIEPVRGKLIPNYFKI-KEEVKDKVYGITISGSGPSIIAFP 102 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT-CCSSHHHHHTTSTTHHHH-HHHHTTTEEEEEECTTSSCEEEEE
T ss_pred hhhhHHHHHHHhccCHHHHHHHHhc-CcccCceecccCCchHHH-HHHhhcCceEEEEeCCCCcEEEEe
Confidence 3456667777777888875 44333 221122222345666554 566665445556799999998644
No 8
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=9.80 E-value=68 Score=20.51 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHhhCccc
Q 025818 206 GIWHSFQTICREEGFLG 222 (247)
Q Consensus 206 ~~~~~~~~i~~~~G~~g 222 (247)
.-..|+++|++++|+.+
T Consensus 85 ddi~CAk~I~~~~G~~a 101 (119)
T d1gd6a_ 85 KAAKCAKKIYKRHRFDA 101 (119)
T ss_dssp HHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHcCcch
Confidence 44689999999998654
No 9
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus aculeatus) [TaxId: 9261]}
Probab=7.02 E-value=1.1e+02 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHh-hCccc
Q 025818 206 GIWHSFQTICRE-EGFLG 222 (247)
Q Consensus 206 ~~~~~~~~i~~~-~G~~g 222 (247)
.-..|+++|+++ +|+.+
T Consensus 90 ddi~CAkkI~~e~~G~~a 107 (125)
T d1juga_ 90 DDLKCAKKIAGEAKGLTP 107 (125)
T ss_dssp HHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHhccCCcch
Confidence 346789999987 78754
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.94 E-value=1.8e+02 Score=14.85 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhccHHHHHHHH
Q 025818 175 GLAGMTAASATYPLDLVRTRL 195 (247)
Q Consensus 175 ~~ag~~~~~~~~P~d~vktr~ 195 (247)
.++-.+.+-+..||-+||..+
T Consensus 23 ~m~~~fGsgfa~PF~ivRhqL 43 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIVRHQL 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHH
Confidence 334444555667998887755
Done!