BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025821
         (247 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P42319|YXJH_BACSU Uncharacterized protein YxjH OS=Bacillus subtilis (strain 168)
           GN=yxjH PE=4 SV=4
          Length = 377

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 144 DGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAE-------YNYIFLWDEDIG 196
           D V D   DL      +H+   N    W A      D VAE        + +FL  +D  
Sbjct: 234 DAVADRPDDLTIT---MHICRGNFRSTWAASGGY--DAVAETILDGLNLDGLFLEYDDDR 288

Query: 197 VENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRFVS 246
             NF+P R+   VK + L+I    +     E+ +P   +RR ++A RFVS
Sbjct: 289 SGNFDPLRF---VKRKDLQIVLGLITSKYGELENPEDVKRRINEAARFVS 335


>sp|Q2T9M9|CK063_BOVIN Uncharacterized protein C11orf63 homolog OS=Bos taurus PE=2 SV=1
          Length = 773

 Score = 32.3 bits (72), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 66  CKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLA 113
            K ++ +L   EALPE + S T NL + PL+  PSK     P M+L A
Sbjct: 128 SKKEEGKLLPVEALPESVDSSTENLTLNPLY--PSK----EPSMDLSA 169


>sp|B7IE34|DER_THEAB GTPase Der OS=Thermosipho africanus (strain TCF52B) GN=der PE=3
           SV=1
          Length = 439

 Score = 32.0 bits (71), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 111 LLAIAAGIKQKKIVD----------QIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAI 160
           L    AG+++K  VD          + ++   + D VV+L      +D  + +   D+ I
Sbjct: 232 LFVDTAGLRRKSKVDYKSLDMYSNVRSIKSIENSDVVVIL------IDAIEGITHQDQRI 285

Query: 161 HVSAANQTKWWFAKRFLHPDIVAEYNY-----IFLWDEDIGVENFNPRRYLSIVKDEGLE 215
              A N+ K      F   D++  + Y     I  ++E +   N++P  +LS +  +G++
Sbjct: 286 AGIAENRGKATIVA-FNKIDLIKNFKYKKEEFIDQFNEKLYFINYSPLIFLSAINKKGID 344

Query: 216 ISQPALDPVKSEVHHPITARRRNSKAHRFVS 246
               A+D     +H+ +     NS   R ++
Sbjct: 345 NLINAIDEAYKSLHYRVQTSAVNSAIQRMMA 375


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,899,628
Number of Sequences: 539616
Number of extensions: 3825663
Number of successful extensions: 7594
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7590
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)