Query 025821
Match_columns 247
No_of_seqs 108 out of 126
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 18:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sd4_A PHD finger protein 20; 34.7 22 0.00074 25.1 2.2 23 139-161 43-66 (69)
2 2eqm_A PHD finger protein 20-l 28.2 30 0.001 25.9 2.1 24 138-161 49-73 (88)
3 2k89_A PLA2P, PLAP, phospholip 24.6 48 0.0016 25.0 2.7 32 183-217 14-57 (80)
4 4dix_A Plectin-related protein 24.4 51 0.0017 29.4 3.2 44 123-174 106-149 (230)
5 1hgv_A PH75 inovirus major coa 24.0 16 0.00056 25.0 -0.0 10 169-178 36-45 (46)
6 2nsc_A Trigger factor, TF; cha 22.4 33 0.0011 25.9 1.4 20 202-223 72-91 (109)
7 1c1y_B Proto-onkogene serine/t 20.6 39 0.0013 25.4 1.5 23 174-196 34-65 (77)
8 1wxm_A A-RAF proto-oncogene se 20.5 41 0.0014 25.9 1.6 24 173-196 39-68 (86)
9 3abi_A Putative uncharacterize 20.4 16 0.00055 32.1 -0.8 26 193-218 339-364 (365)
10 1vmb_A 30S ribosomal protein S 17.7 43 0.0015 27.1 1.2 58 176-235 12-73 (140)
No 1
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=34.70 E-value=22 Score=25.12 Aligned_cols=23 Identities=13% Similarity=0.540 Sum_probs=14.1
Q ss_pred EEEEecCccccccc-cccccceeE
Q 025821 139 MLFHYDGVVDEWKD-LVWADRAIH 161 (247)
Q Consensus 139 mLFHYDG~vd~W~d-~eWs~~aIH 161 (247)
+|.||||--+.|++ ..+.+.-||
T Consensus 43 ~~VhfdGw~~~~D~W~~~dS~~i~ 66 (69)
T 3sd4_A 43 VLIHFKRWNHRYDEWFCWDSPYLR 66 (69)
T ss_dssp EEEEETTSCGGGCEEEETTCTTEE
T ss_pred EEEEeCCCCCCCCEEEcCCCCCee
Confidence 69999996666653 334444444
No 2
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=28.22 E-value=30 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.601 Sum_probs=17.2
Q ss_pred EEEEEecCccccccc-cccccceeE
Q 025821 138 VMLFHYDGVVDEWKD-LVWADRAIH 161 (247)
Q Consensus 138 imLFHYDG~vd~W~d-~eWs~~aIH 161 (247)
-+|.||||--+.|++ .+++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 379999997766665 556666666
No 3
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=24.63 E-value=48 Score=25.02 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=21.1
Q ss_pred cceeeEEEeecccccC----CCC--------hhhhHHHHhhhCcccc
Q 025821 183 AEYNYIFLWDEDIGVE----NFN--------PRRYLSIVKDEGLEIS 217 (247)
Q Consensus 183 a~YeYiFlWDEDlgve----~F~--------~~~Yl~Ivk~~gLeIS 217 (247)
.+|||+|=-|=+-|.. .|| +++|| .+|+|.+|
T Consensus 14 keYDyVFdVdi~dG~~~lkLpyN~~dnP~~aAqkFi---~~n~Lp~~ 57 (80)
T 2k89_A 14 KEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFL---QKNDLNPM 57 (80)
T ss_dssp EEESEEEEECCSSSCSCEEEEECTTSCHHHHHHHHH---HHHTCCTT
T ss_pred ccccEEEEEEcCCCCcccccCccCCCCHHHHHHHHH---HHcCCCHH
Confidence 4899999887555554 333 46666 67777654
No 4
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=24.42 E-value=51 Score=29.36 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=35.6
Q ss_pred chhHHhhhcCCCCeEEEEEEecCccccccccccccceeEEEEecccchhhhc
Q 025821 123 IVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAK 174 (247)
Q Consensus 123 ~Vd~~V~KF~~~nF~imLFHYDG~vd~W~d~eWs~~aIHvsa~~QtKWWfAK 174 (247)
.|+++++|= ...|.|++..+.| -+|.+.+|||-.+.-++.-+.|
T Consensus 106 yVEaL~rk~-~tEFNVvv~q~nG-------~d~~s~sihvl~vgk~RiKL~k 149 (230)
T 4dix_A 106 YVEALVRKH-DVDFNVVVTQMSG-------EDHTSESIHLFHVGKMRIKLCK 149 (230)
T ss_dssp HHHHHHTTS-EEEEEEEEEEETT-------EECCCCCEEEEEEESSEEEEEE
T ss_pred HHHHHhhcC-CCcEEEEEEEEcC-------ccCccceEEEEEeccEEEEEec
Confidence 499999996 7999999999999 3688899998887766554443
No 5
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=23.97 E-value=16 Score=25.03 Aligned_cols=10 Identities=60% Similarity=1.242 Sum_probs=7.2
Q ss_pred chhhhcccCC
Q 025821 169 KWWFAKRFLH 178 (247)
Q Consensus 169 KWWfAKRFLH 178 (247)
-|-||||||.
T Consensus 36 aw~ya~rflk 45 (46)
T 1hgv_A 36 AWKYAKRFLK 45 (46)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 5778888863
No 6
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=22.38 E-value=33 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred hhhhHHHHhhhCcccccCccCC
Q 025821 202 PRRYLSIVKDEGLEISQPALDP 223 (247)
Q Consensus 202 ~~~Yl~Ivk~~gLeISQPaLd~ 223 (247)
++ |-+.+++++| ++||-+|.
T Consensus 72 ~~-~~~ai~e~~l-~~~P~i~~ 91 (109)
T 2nsc_A 72 DL-IPDTLKDRKL-ILSPIVTE 91 (109)
T ss_dssp TT-HHHHTTTSCC-SSCCCCCC
T ss_pred HH-HHHHHHHcCc-CCCCcccc
Confidence 45 8899999999 99999985
No 7
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.57 E-value=39 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.3
Q ss_pred cccCCcccccce---------eeEEEeecccc
Q 025821 174 KRFLHPDIVAEY---------NYIFLWDEDIG 196 (247)
Q Consensus 174 KRFLHPdiVa~Y---------eYiFlWDEDlg 196 (247)
+|-|.|+..+-| ++..-||+|++
T Consensus 34 ~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~ 65 (77)
T 1c1y_B 34 VRGLQPECCAVFRLLHEHKGKKARLDWNTDAA 65 (77)
T ss_dssp TTTCCGGGEEEEEEEGGGSSEEEEECTTSBGG
T ss_pred HcCCCHHHeEEEEeccCCCCCccccchhHhhh
Confidence 899999998888 47889999987
No 8
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.51 E-value=41 Score=25.86 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.8
Q ss_pred hcccCCcccccce------eeEEEeecccc
Q 025821 173 AKRFLHPDIVAEY------NYIFLWDEDIG 196 (247)
Q Consensus 173 AKRFLHPdiVa~Y------eYiFlWDEDlg 196 (247)
-+|-|.|+..+-| +++.-||+|++
T Consensus 39 k~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~ 68 (86)
T 1wxm_A 39 KVRGLNQDCCVVYRLIKGRKTVTAWDTAIA 68 (86)
T ss_dssp HTTTCCSSSEEEEEESSSCEEEECSSSBST
T ss_pred HHcCCCHHHeEEEEcCCCCccccchhHhhh
Confidence 3899999998888 58899999986
No 9
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.43 E-value=16 Score=32.10 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred cccccCCCChhhhHHHHhhhCccccc
Q 025821 193 EDIGVENFNPRRYLSIVKDEGLEISQ 218 (247)
Q Consensus 193 EDlgve~F~~~~Yl~Ivk~~gLeISQ 218 (247)
|.++++.+.++.+|+-++++|++|..
T Consensus 339 E~l~~~~~~~~~~l~~L~~~GI~I~e 364 (365)
T 3abi_A 339 EILGMREDTFRRIIDELKERGISIEG 364 (365)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTCCEEC
T ss_pred hhcccchhhHHHHHHHHHHCCCeeee
Confidence 67778888899999999999999964
No 10
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=17.70 E-value=43 Score=27.12 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=38.6
Q ss_pred cCCcccccceeeEEEeecccccCCCC--hhhhHHHHhhh-CcccccCccCC-CCCceeeeeeee
Q 025821 176 FLHPDIVAEYNYIFLWDEDIGVENFN--PRRYLSIVKDE-GLEISQPALDP-VKSEVHHPITAR 235 (247)
Q Consensus 176 FLHPdiVa~YeYiFlWDEDlgve~F~--~~~Yl~Ivk~~-gLeISQPaLd~-~~~~~h~~iT~R 235 (247)
.+-|+.+..||-+||-+.|+.-|... .++|-+++.+. |-+|-. +|. .+-.+.|+|.+.
T Consensus 12 ~~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~--ve~wG~R~LAY~I~K~ 73 (140)
T 1vmb_A 12 HMAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDK--VERMGMRKFAYEIKKF 73 (140)
T ss_dssp -----CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEE--EEEEEEEEEEEEETTE
T ss_pred cccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEE--EEeecCcccccccCCC
Confidence 34588899999999999998876665 58999999999 887753 221 122355666554
Done!