Query 025822
Match_columns 247
No_of_seqs 115 out of 437
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 1.4E-94 3E-99 606.1 16.5 236 4-239 2-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.3E-91 2.7E-96 617.2 24.3 238 7-244 1-240 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.6E-87 5.7E-92 589.4 22.3 236 7-242 1-236 (236)
4 KOG0841 Multifunctional chaper 100.0 4.8E-82 1.1E-86 544.6 20.3 238 6-243 1-239 (247)
5 PF13424 TPR_12: Tetratricopep 96.1 0.0091 2E-07 42.5 4.1 55 148-204 21-75 (78)
6 KOG1840 Kinesin light chain [C 94.3 5.6 0.00012 39.2 18.4 185 9-208 201-400 (508)
7 TIGR00990 3a0801s09 mitochondr 91.9 3.4 7.4E-05 40.9 13.2 53 148-202 483-535 (615)
8 PF12862 Apc5: Anaphase-promot 89.3 1.9 4E-05 32.3 6.8 71 132-208 3-74 (94)
9 KOG1840 Kinesin light chain [C 87.8 30 0.00065 34.2 18.4 184 9-215 285-490 (508)
10 PF07719 TPR_2: Tetratricopept 82.3 3.7 8.1E-05 23.7 4.3 30 10-39 4-33 (34)
11 PF13414 TPR_11: TPR repeat; P 82.0 5.5 0.00012 27.0 5.7 47 148-203 19-66 (69)
12 PF13374 TPR_10: Tetratricopep 81.1 1.6 3.4E-05 26.5 2.4 24 148-171 18-41 (42)
13 PF13174 TPR_6: Tetratricopept 80.4 3.6 7.8E-05 23.6 3.7 31 9-39 2-32 (33)
14 PF04781 DUF627: Protein of un 77.1 4.2 9.2E-05 32.0 4.2 58 104-162 16-74 (111)
15 PF13181 TPR_8: Tetratricopept 76.3 5 0.00011 23.3 3.5 30 9-38 3-32 (34)
16 PF00515 TPR_1: Tetratricopept 75.6 7.1 0.00015 22.8 4.1 30 10-39 4-33 (34)
17 PF13428 TPR_14: Tetratricopep 74.6 7.6 0.00016 24.5 4.3 30 10-39 4-33 (44)
18 TIGR00990 3a0801s09 mitochondr 70.1 1.2E+02 0.0026 30.1 16.3 73 149-230 525-597 (615)
19 PF12569 NARP1: NMDA receptor- 69.3 1.2E+02 0.0027 29.9 16.8 62 142-204 156-223 (517)
20 PF13431 TPR_17: Tetratricopep 67.3 5.8 0.00013 24.0 2.3 34 154-196 1-34 (34)
21 TIGR02917 PEP_TPR_lipo putativ 64.1 1.6E+02 0.0034 29.2 15.5 61 8-70 23-83 (899)
22 TIGR02917 PEP_TPR_lipo putativ 62.9 1.6E+02 0.0035 29.0 16.1 30 10-39 468-497 (899)
23 PF13424 TPR_12: Tetratricopep 60.3 13 0.00027 25.9 3.4 38 170-209 1-38 (78)
24 smart00028 TPR Tetratricopepti 59.8 23 0.00049 18.4 3.8 29 10-38 4-32 (34)
25 PF13414 TPR_11: TPR repeat; P 59.0 51 0.0011 22.0 7.3 44 9-53 5-48 (69)
26 COG0233 Frr Ribosome recycling 58.4 43 0.00093 28.8 6.7 74 37-111 104-177 (187)
27 PF13432 TPR_16: Tetratricopep 58.1 52 0.0011 21.8 6.6 53 12-66 2-54 (65)
28 PF01765 RRF: Ribosome recycli 58.0 44 0.00096 27.6 6.8 72 38-110 85-156 (165)
29 KOG4759 Ribosome recycling fac 57.2 60 0.0013 29.3 7.7 71 38-111 183-253 (263)
30 PF13371 TPR_9: Tetratricopept 56.9 45 0.00097 22.5 5.7 45 149-202 12-56 (73)
31 PRK15363 pathogenicity island 56.1 34 0.00074 28.5 5.7 72 145-229 82-155 (157)
32 PF13432 TPR_16: Tetratricopep 55.5 31 0.00067 22.9 4.6 34 6-39 30-63 (65)
33 PF13176 TPR_7: Tetratricopept 54.8 25 0.00054 21.1 3.6 25 10-34 2-26 (36)
34 CHL00033 ycf3 photosystem I as 54.7 94 0.002 25.0 8.2 69 149-226 89-163 (168)
35 TIGR02521 type_IV_pilW type IV 53.9 1.1E+02 0.0024 24.3 16.1 57 9-67 33-89 (234)
36 PF05010 TACC: Transforming ac 53.5 40 0.00086 29.4 5.9 83 12-108 123-206 (207)
37 TIGR00496 frr ribosome recycli 52.5 1.1E+02 0.0023 25.9 8.3 73 38-111 94-166 (176)
38 PRK10049 pgaA outer membrane p 50.5 3E+02 0.0065 28.3 13.8 56 10-68 86-141 (765)
39 PRK10049 pgaA outer membrane p 50.1 3E+02 0.0066 28.2 14.4 31 10-40 52-82 (765)
40 cd00520 RRF Ribosome recycling 47.4 63 0.0014 27.3 6.1 73 38-111 99-171 (179)
41 PRK12794 flaF flagellar biosyn 46.7 28 0.00062 27.7 3.7 57 180-236 3-60 (122)
42 PRK00083 frr ribosome recyclin 46.3 77 0.0017 27.0 6.5 73 38-111 103-175 (185)
43 KOG4162 Predicted calmodulin-b 46.0 1E+02 0.0022 32.0 8.2 96 94-204 411-507 (799)
44 PF14559 TPR_19: Tetratricopep 44.4 90 0.0019 20.6 5.6 53 19-73 3-55 (68)
45 CHL00033 ycf3 photosystem I as 44.2 71 0.0015 25.7 5.9 50 148-203 51-100 (168)
46 PF14559 TPR_19: Tetratricopep 44.1 29 0.00064 23.1 3.1 34 6-39 24-57 (68)
47 COG3947 Response regulator con 43.6 38 0.00083 31.5 4.4 44 188-236 292-335 (361)
48 PF10083 DUF2321: Uncharacteri 41.2 1.9E+02 0.0041 24.2 7.7 34 25-58 83-116 (158)
49 PRK14720 transcript cleavage f 39.7 52 0.0011 34.9 5.2 76 118-206 99-180 (906)
50 PRK15179 Vi polysaccharide bio 39.6 4.4E+02 0.0096 27.1 13.2 33 8-40 87-119 (694)
51 PRK12793 flaF flagellar biosyn 38.9 37 0.00079 26.8 3.2 52 184-236 6-58 (115)
52 PF12895 Apc3: Anaphase-promot 38.7 39 0.00085 23.8 3.1 43 155-200 41-83 (84)
53 PF13429 TPR_15: Tetratricopep 38.3 71 0.0015 27.9 5.4 162 12-205 49-210 (280)
54 PRK02603 photosystem I assembl 36.8 1.2E+02 0.0025 24.6 6.1 50 149-204 52-101 (172)
55 PF13371 TPR_9: Tetratricopept 36.7 65 0.0014 21.7 3.9 29 10-38 32-60 (73)
56 PF06552 TOM20_plant: Plant sp 35.8 86 0.0019 26.9 5.1 84 129-222 32-121 (186)
57 PF02259 FAT: FAT domain; Int 35.2 3.2E+02 0.0069 24.2 10.7 30 8-37 147-176 (352)
58 COG4499 Predicted membrane pro 35.1 63 0.0014 30.9 4.5 47 174-220 231-282 (434)
59 cd02656 MIT MIT: domain contai 33.8 1.7E+02 0.0036 20.5 6.3 27 9-35 8-34 (75)
60 PRK11447 cellulose synthase su 33.3 6.5E+02 0.014 27.2 16.0 63 9-72 114-176 (1157)
61 KOG2002 TPR-containing nuclear 31.9 6.2E+02 0.013 27.3 11.4 51 153-207 250-302 (1018)
62 PRK11788 tetratricopeptide rep 31.6 3.9E+02 0.0083 24.0 15.7 24 12-35 112-135 (389)
63 PLN03088 SGT1, suppressor of 31.5 4.2E+02 0.0092 24.5 10.5 59 8-68 37-95 (356)
64 PF12688 TPR_5: Tetratrico pep 31.3 1.9E+02 0.0041 22.7 6.2 50 149-204 18-67 (120)
65 TIGR02795 tol_pal_ybgF tol-pal 31.1 2E+02 0.0043 20.6 7.5 59 9-68 4-64 (119)
66 PRK15331 chaperone protein Sic 30.8 2.2E+02 0.0048 23.9 6.8 70 148-232 87-156 (165)
67 TIGR02795 tol_pal_ybgF tol-pal 30.4 1.9E+02 0.0042 20.7 5.9 43 10-52 42-86 (119)
68 PLN03088 SGT1, suppressor of 30.3 1.4E+02 0.003 27.7 6.1 23 178-201 74-96 (356)
69 PF05008 V-SNARE: Vesicle tran 29.4 2.1E+02 0.0044 20.2 6.8 67 25-92 3-70 (79)
70 PRK10370 formate-dependent nit 29.2 1.3E+02 0.0027 25.4 5.2 59 8-68 108-169 (198)
71 PRK09782 bacteriophage N4 rece 29.0 7.6E+02 0.016 26.6 15.1 24 11-34 513-536 (987)
72 PF10516 SHNi-TPR: SHNi-TPR; 28.6 50 0.0011 20.7 2.0 37 130-169 2-38 (38)
73 PF08717 nsp8: nsp8 replicase; 28.0 60 0.0013 27.9 2.9 40 147-206 14-53 (199)
74 KOG1107 Membrane coat complex 26.6 1.3E+02 0.0029 30.9 5.4 44 147-190 655-699 (760)
75 COG2956 Predicted N-acetylgluc 26.1 1.1E+02 0.0024 28.9 4.4 48 11-58 218-265 (389)
76 PRK15359 type III secretion sy 26.0 1.3E+02 0.0028 23.8 4.5 58 9-68 26-83 (144)
77 PRK02603 photosystem I assembl 25.8 3.5E+02 0.0076 21.7 7.7 13 149-161 89-101 (172)
78 PRK11189 lipoprotein NlpI; Pro 25.7 1.5E+02 0.0033 26.4 5.4 32 8-39 237-268 (296)
79 PRK11447 cellulose synthase su 25.5 8.8E+02 0.019 26.2 15.1 55 12-68 356-410 (1157)
80 TIGR03302 OM_YfiO outer membra 25.1 4E+02 0.0087 22.1 16.1 63 8-71 34-98 (235)
81 cd05804 StaR_like StaR_like; a 24.8 4.9E+02 0.011 23.0 11.2 35 5-39 41-75 (355)
82 PF08631 SPO22: Meiosis protei 24.8 4.9E+02 0.011 23.0 8.5 89 148-237 9-100 (278)
83 COG3063 PilF Tfp pilus assembl 24.7 1E+02 0.0022 27.7 3.8 47 148-203 85-131 (250)
84 PF08899 DUF1844: Domain of un 24.1 1.4E+02 0.003 21.8 3.8 29 23-53 40-68 (74)
85 COG2250 Uncharacterized conser 24.1 3.7E+02 0.008 21.3 9.5 103 8-111 14-129 (132)
86 KOG1126 DNA-binding cell divis 23.8 92 0.002 31.6 3.8 67 127-202 484-550 (638)
87 KOG4234 TPR repeat-containing 23.7 5.3E+02 0.011 23.0 8.2 29 10-38 171-199 (271)
88 COG3629 DnrI DNA-binding trans 23.6 5.6E+02 0.012 23.3 8.5 61 10-70 156-217 (280)
89 KOG0570 Transcriptional coacti 23.5 4.7E+02 0.01 22.8 7.5 52 44-110 110-166 (223)
90 KOG1156 N-terminal acetyltrans 23.4 3.2E+02 0.0069 28.0 7.4 156 40-224 3-189 (700)
91 PF13041 PPR_2: PPR repeat fam 23.2 2E+02 0.0044 18.0 5.6 39 14-52 10-48 (50)
92 PF08424 NRDE-2: NRDE-2, neces 23.1 5E+02 0.011 23.6 8.3 86 148-240 118-213 (321)
93 TIGR00756 PPR pentatricopeptid 22.3 1.5E+02 0.0033 16.2 4.0 27 13-39 6-32 (35)
94 KOG0547 Translocase of outer m 22.2 1E+02 0.0022 30.6 3.7 40 149-203 132-177 (606)
95 PHA02103 hypothetical protein 21.9 24 0.00053 27.7 -0.5 14 128-141 78-91 (135)
96 PF07309 FlaF: Flagellar prote 21.6 1E+02 0.0022 24.1 2.9 48 188-236 10-57 (113)
97 PF14689 SPOB_a: Sensor_kinase 21.5 91 0.002 21.4 2.4 19 17-35 33-51 (62)
98 KOG3313 Molecular chaperone Pr 20.9 33 0.00071 29.2 0.0 57 164-233 104-160 (187)
99 PF03755 YicC_N: YicC-like fam 20.5 2.1E+02 0.0045 23.4 4.8 62 150-211 82-147 (159)
100 KOG2002 TPR-containing nuclear 20.5 5.9E+02 0.013 27.4 8.8 67 5-71 714-780 (1018)
101 cd05804 StaR_like StaR_like; a 20.4 6E+02 0.013 22.4 15.0 60 9-68 8-68 (355)
102 PRK11820 hypothetical protein; 20.2 2.4E+02 0.0052 25.7 5.5 60 152-212 85-145 (288)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-94 Score=606.08 Aligned_cols=236 Identities=73% Similarity=1.142 Sum_probs=231.6
Q ss_pred chhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHH
Q 025822 4 SKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK 83 (247)
Q Consensus 4 ~~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 83 (247)
++.||+.+|+|+|++||+||++|++-||.++..+.+|+.+|||||||||||+||.||+|||++++++||+++++++.++.
T Consensus 2 s~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~ 81 (268)
T COG5040 2 STSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVE 81 (268)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHh
Q 025822 84 RIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (247)
Q Consensus 84 ~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~ 163 (247)
.|++||++|++||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|.
T Consensus 82 lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~ 161 (268)
T COG5040 82 LIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIAT 161 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCC
Q 025822 164 ADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIP 239 (247)
Q Consensus 164 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~ 239 (247)
..||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|+|+||||||||||+|+++.+
T Consensus 162 teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 162 TELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred ccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.3e-91 Score=617.22 Aligned_cols=238 Identities=75% Similarity=1.130 Sum_probs=229.8
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHH
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~-~-~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 84 (247)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|++++++++.+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877788778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 025822 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (247)
Q Consensus 85 i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~ 164 (247)
+++||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCCCC
Q 025822 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 244 (247)
Q Consensus 165 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~~~~~~ 244 (247)
+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+++|||||||||++|+++.+++++.
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~~ 240 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGAD 240 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996666543
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.6e-87 Score=589.40 Aligned_cols=236 Identities=71% Similarity=1.102 Sum_probs=223.6
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHH
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 86 (247)
|++++|||||++|||||+||+++||++++.+++||.|||||||+||||+||++|+|||+|++++++++.+|++..++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcC
Q 025822 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (247)
Q Consensus 87 ~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L 166 (247)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+++|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCC
Q 025822 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 242 (247)
Q Consensus 167 ~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~~~~ 242 (247)
||+||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.++++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~~ 236 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEEE 236 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987763
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-82 Score=544.64 Aligned_cols=238 Identities=79% Similarity=1.166 Sum_probs=232.4
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHH
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i 85 (247)
+|++++++|++++||+||+||+.+||.+++.+.+||.+||||||++|||+||++|++||+|++++||++.++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 025822 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (247)
Q Consensus 86 ~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~ 164 (247)
..||++|+.||..+|++++.++|.+|+|.++. .|++|||+|||||||||++||..|++|++++++++++|+.|.++|+.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCCC
Q 025822 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGG 243 (247)
Q Consensus 165 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~~~~~ 243 (247)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++++
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~ 239 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEK 239 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877643
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.0091 Score=42.49 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
-++|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 35799999999999 457899888777788888888777 69999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.32 E-value=5.6 Score=39.22 Aligned_cols=185 Identities=15% Similarity=0.167 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhhhhhhhCc--
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL-------DVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGN-- 78 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~-------~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~-~e~~~~~~~~-- 78 (247)
.+.++|.+..+.|+|+.++...|+.++. +...=..-.+-|++.|-+. +..+.|..++.. +...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4556888888899999999999998865 1111122344466665543 445666666643 3334433443
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHH
Q 025822 79 EVNAKRIKE-----YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (247)
Q Consensus 79 ~~~~~~i~~-----yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 153 (247)
+.....+.+ ++.-=-.|-...|+.+++|..+. +.+..++-.--+ .++..-..-..-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQL-----------SELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHHH-----------HHHHHHHHHhcchhHHHH
Confidence 332232222 22233367789999999999983 333333322211 222211111223578899
Q ss_pred HHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025822 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (247)
Q Consensus 154 ~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ 208 (247)
.|+.|+.+....+.+.||.-=|.--|+++.|+- +|..++|.++.++|+...-+-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 999999999888999999999999999998887 699999999999998877543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.91 E-value=3.4 Score=40.94 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
.+.|...|++|+.+.. ..++.++..++ .++.+..+|+-.|+.++|+.+.++|+
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567777888876643 23333332222 34545555665677777777666654
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.34 E-value=1.9 Score=32.25 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred cccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhh-hhhHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025822 132 YRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (247)
Q Consensus 132 yRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ 208 (247)
.+|+--+..++ -..|.+.....++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34444444443 246788888888888777776654455544 788887776 599999999999998888754
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=87.77 E-value=30 Score=34.16 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcC----CCCCHHHHHHHHHH---------HhhhhhhhhHHHHHHHHHhhhhhh
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD----VELTVEERNLLSVG---------YKNVIGARRASWRILSSIEQKEEA 75 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~----~~Lt~eERnLls~a---------yKn~i~~~R~s~R~l~~~e~~~~~ 75 (247)
-+.-+|.+....|+|+++-.+++.+++.- +...++=-..|+.. |...+.-.+.+.+++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 35567888888899999999998887542 22333322222221 3344444455555443 1111
Q ss_pred hCchHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHH
Q 025822 76 KGNEVNAKRIKEYRQKVE---------SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKE 146 (247)
Q Consensus 76 ~~~~~~~~~i~~yk~ki~---------~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~ 146 (247)
..++ .+..++..+- +|=..+-..+|.+.-...=. .+..--.+++.|-.+|+|-.
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 1111111111 34445556666655443221 23344567777777775422
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCcc
Q 025822 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEE 215 (247)
Q Consensus 147 ~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee 215 (247)
-...|.+.|.+|..+. ....|.||--++..+|.+.- |+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 1346889999999999 78999999999999999985 5778999999999998876655556655543
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.35 E-value=3.7 Score=23.74 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+..++.+..+.|+|+++++++++.+..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999987663
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.97 E-value=5.5 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhC-ChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~-~~~~A~~iak~afd 203 (247)
-+.|...|++|+++ +|-.-.+..|.++-++. +| +.++|+.-.++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 35789999999876 34444577888888777 57 79999998888764
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.09 E-value=1.6 Score=26.46 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 025822 148 AANSMKAYETATTAAEADLPPTHP 171 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~p 171 (247)
.+.|...|++|+.+.+..++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357999999999999888899998
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.41 E-value=3.6 Score=23.56 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999976653
No 14
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.10 E-value=4.2 Score=31.96 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=39.8
Q ss_pred HHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccC-chhHHHHHHHHHHHHHHHHHH
Q 025822 104 MTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG-DEKKEAAANSMKAYETATTAA 162 (247)
Q Consensus 104 i~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~-~~~~~~~~~a~~~Y~~A~~~a 162 (247)
+++|...+...- ..++-.|-+...|+.|..+|....+ +-+....-.|.+||.+|..++
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 444444433322 2233347788999999999998654 567778889999999997554
No 15
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.29 E-value=5 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~ 38 (247)
-+..++++..+.|+++.++.++++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999998755
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.61 E-value=7.1 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+..++.+..+.|+|++++.+.++.++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988775
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.60 E-value=7.6 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
...+|+...+.|++++++..++++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988775
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=70.10 E-value=1.2e+02 Score=30.06 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLr 228 (247)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-..-+-..--++.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666654 4555553 22333444444 79999999988887665543222222235666666645555
Q ss_pred hh
Q 025822 229 DN 230 (247)
Q Consensus 229 dN 230 (247)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 19
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=69.34 E-value=1.2e+02 Score=29.95 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCC------CCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 142 DEKKEAAANSMKAYETATTAAEADLPP------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 142 ~~~~~~~~~a~~~Y~~A~~~a~~~L~p------t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
..+..+++.-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455566666666666554432 3332 357777778888888999999999999988877543
No 20
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=67.25 E-value=5.8 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHH
Q 025822 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACH 196 (247)
Q Consensus 154 ~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ 196 (247)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36666643 35554 456788898886 599999863
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=64.07 E-value=1.6e+02 Score=29.19 Aligned_cols=61 Identities=26% Similarity=0.270 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e 70 (247)
..++..|+....-|+|++++..+++.++..|+ +.+=+..+..+|-. .+....|...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 34678899999999999999999999987776 66777888877766 477777777776544
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=62.90 E-value=1.6e+02 Score=29.03 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
...++.+..+.|+|++++.++.++++.+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455666666677777777777776655444
No 23
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=60.33 E-value=13 Score=25.88 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025822 170 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (247)
Q Consensus 170 ~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~l 209 (247)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888899998886 69999999999999888 5443
No 24
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.82 E-value=23 Score=18.38 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~ 38 (247)
+..++.+..+.++|++++..+.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35678888889999999999999887654
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=59.05 E-value=51 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayK 53 (247)
.+..++.+..+.|+|++++.++++.++.+|.- ..=..-++.+|.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~ 48 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999999987663 333334444443
No 26
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=58.37 E-value=43 Score=28.75 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 37 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 37 ~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
-|+||.|-|.=|..-.|...-..|.|+|.+..=.... .+....-..+-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999998899999885311110 0000000012355667778888888888888888654
No 27
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=58.14 E-value=52 Score=21.77 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l 66 (247)
-+|...-+.|+|++++..+++++..+|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4678888999999999999999987755 5555555555554 334444444443
No 28
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=58.04 E-value=44 Score=27.63 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 110 (247)
|.+|.|-|.-+....|...-..|.++|.+..--.+.-.+ .......-++-.++++++|..+.++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986532222100 000000234455667777777777777777654
No 29
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.23 E-value=60 Score=29.31 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+.|.|-|.=|+...+.....+|.|+|-+..=--+...+... ..=.+-..+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999886522222211111 02244556778888888888888887654
No 30
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=56.85 E-value=45 Score=22.51 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3455555555433 55566677778888877 699999988776665
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=56.10 E-value=34 Score=28.51 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccc--hHhHHH
Q 025822 145 KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEES--YKDSTL 222 (247)
Q Consensus 145 ~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~--~~ds~~ 222 (247)
..--+.|.++|..|..+ .|.||- ...|.++-+.- +|+.+.|. ++|+.|+.--...++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 33456788888888754 445552 14455555544 58887765 58888887665443321 233555
Q ss_pred HHHHHHh
Q 025822 223 IMQLLRD 229 (247)
Q Consensus 223 ilqlLrd 229 (247)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666554
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=55.50 E-value=31 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=27.7
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
..+-+..++.+..+.|+|++.+.++++++...|.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456678999999999999999999999877653
No 33
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.78 E-value=25 Score=21.11 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVA 34 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i 34 (247)
+..+|.+..+.|+|+.++++.++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999855
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=54.66 E-value=94 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTL 222 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------Ei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ 222 (247)
+.|..+|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|.....+|+.---. .-+++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688889888855 2333 233445555555 2468888888777766533222 22345555666655
Q ss_pred HHHH
Q 025822 223 IMQL 226 (247)
Q Consensus 223 ilql 226 (247)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=53.87 E-value=1.1e+02 Score=24.33 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
-...++......|+|+.++..+++++..+|.- ..-...++..|-.. +....+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 35567888888899999999999998766543 33444455544332 34444444443
No 36
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.46 E-value=40 Score=29.37 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=44.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhhhhhhhCchHHHHHHHHHHH
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGNEVNAKRIKEYRQ 90 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~-~e~~~~~~~~~~~~~~i~~yk~ 90 (247)
|+++|..+-.||+-+-... +..-+...+|..-+-..++.-+...+..+|--.. +..- -..|. -+.
T Consensus 123 y~~~l~~~eqry~aLK~hA----eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SL---------e~~Le-QK~ 188 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHA----EEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSL---------EESLE-QKT 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHH-HHH
Confidence 5667777777775543333 2223345556666666666666666666665421 0000 01111 122
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025822 91 KVESELSDICNDIMTVID 108 (247)
Q Consensus 91 ki~~EL~~~c~eii~lid 108 (247)
+=..||..||+++|.=++
T Consensus 189 kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 189 KENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 223799999999987553
No 37
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=52.47 E-value=1.1e+02 Score=25.89 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888888888753111110 000000001144555666677777766666666543
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.54 E-value=3e+02 Score=28.28 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
...+|.+.-..|++++++..+++++...|+-.. ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345555555666666666666666665554433 5555555543 2444555555443
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.09 E-value=3e+02 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
+..+|.++-..|++++++.++++++...|.-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6778888888888888888888888766554
No 40
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=47.39 E-value=63 Score=27.27 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|++|.|-|.=|....|...-..|.++|.+..--.+.-.+ .......-++-.++.++++..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk-~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKK-LEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998888888888875311111000 0000001233444556666666666666666543
No 41
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=46.67 E-value=28 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=38.5
Q ss_pred hHHH-HHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 025822 180 FSVF-YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (247)
Q Consensus 180 ~SVF-~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 236 (247)
+|.+ |-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3444 44555556666666677888888877766554323335678999999999984
No 42
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=46.33 E-value=77 Score=26.96 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-..|.++|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888885421111000 0000001134445566666666666666666543
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=46.00 E-value=1e+02 Score=31.97 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcc-cCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 025822 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK-FGDEKKEAAANSMKAYETATTAAEADLPPTHPI 172 (247)
Q Consensus 94 ~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pi 172 (247)
+|..++...++++... . ...-+---+++-|=-|-..|-.. ..++|.....++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~----~--~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG----Q--RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh----h--hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 5666666666653311 1 11111223456676676666554 356788889999999999863 678999
Q ss_pred hhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 173 RLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 173 rLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
-...+.|++|-+ .++.+.|...++.++.-
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555555544 57888888887777554
No 44
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.41 E-value=90 Score=20.59 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=37.5
Q ss_pred HhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 025822 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE 73 (247)
Q Consensus 19 q~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~ 73 (247)
+.|+|++++..+++++..+|. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 568899999999999887777 666666676666554 66667777776655443
No 45
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=44.24 E-value=71 Score=25.69 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 357888899988763 2233333345666655544 7999999998888774
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.13 E-value=29 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.0
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+.+-.+.+|++.-+.|+|+++...+++++..+|+
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456678999999999999999999999877665
No 47
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.61 E-value=38 Score=31.45 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=38.3
Q ss_pred hCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 025822 188 MNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (247)
Q Consensus 188 ~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 236 (247)
.|.+.+|+++.+.++. +|.|+|++++.-+.++-.++||+..=.+
T Consensus 292 ~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 AGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred cCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 5999999999998764 7899999999999999999999876443
No 48
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.15 E-value=1.9e+02 Score=24.19 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 025822 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (247)
Q Consensus 25 Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~ 58 (247)
..++..+++++...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999999887653
No 49
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=39.66 E-value=52 Score=34.88 Aligned_cols=76 Identities=18% Similarity=0.031 Sum_probs=47.8
Q ss_pred CchhhHHhhhccccccc------chhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCCh
Q 025822 118 GESTVFFYKMKGDYYRY------LAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSP 191 (247)
Q Consensus 118 ~eskvfy~KmkgDyyRY------laE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~ 191 (247)
.....||++..|||+.- +|++-.. -.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk---~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL 165 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAK---LNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DK 165 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hH
Confidence 34455666666665532 2333211 11245788899888754 377764 556555555555 99
Q ss_pred HHHHHHHHHHHHHHH
Q 025822 192 ERACHLAKQAFDEAI 206 (247)
Q Consensus 192 ~~A~~iak~afd~ai 206 (247)
++|.+++++|+.--+
T Consensus 166 ~KA~~m~~KAV~~~i 180 (906)
T PRK14720 166 EKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999977644
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.62 E-value=4.4e+02 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
+-+..+|.+..+.|||+|....+..+++..|+.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~ 119 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS 119 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 345678999999999999999999999988876
No 51
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=38.87 E-value=37 Score=26.81 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=41.2
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 025822 184 YYEIMNSPE-RACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (247)
Q Consensus 184 ~yEi~~~~~-~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 236 (247)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988876655544 677888999999999984
No 52
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.70 E-value=39 Score=23.85 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHH
Q 025822 155 YETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (247)
Q Consensus 155 Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~ 200 (247)
|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhc
Confidence 4445544432 33333333333333333333 5777776665443
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=38.33 E-value=71 Score=27.89 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHH
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 91 (247)
.+|.|+...+++++++.+..+++..++.-...-.+|... + .-+....+.+++...-++. .........+.-|
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~--- 120 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERD--GDPRYLLSALQLY--- 120 (280)
T ss_dssp --------------------------------------------------------------------------H-H---
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc--cccchhhHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 025822 92 VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP 171 (247)
Q Consensus 92 i~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~p 171 (247)
.-..-..++.++|+... .....+.-.+++-+.|.+|.-.-+ .++|..+|++|+++. |.||
T Consensus 121 ---~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 121 ---YRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp ---HHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred ---HHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 172 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 172 irLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
- +++.-++.+--.|+.++|..+.+..-..+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=36.79 E-value=1.2e+02 Score=24.60 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 467888888887642 222223345566666655 79999999888777663
No 55
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.68 E-value=65 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~ 38 (247)
...+|.+..+.|+|.+.+..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 44566677777777777777777765554
No 56
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.77 E-value=86 Score=26.90 Aligned_cols=84 Identities=29% Similarity=0.355 Sum_probs=47.5
Q ss_pred ccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCc---chhhhhhhhHHHHHHHhCChHHHH---HHHHHHH
Q 025822 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERAC---HLAKQAF 202 (247)
Q Consensus 129 gDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~p---irLgL~LN~SVF~yEi~~~~~~A~---~iak~af 202 (247)
|...==++-|..+.+.+++.+.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|- +.|...|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHH
Confidence 3333345556777788888999999999998663 2222 4466665544443 34555554 4566668
Q ss_pred HHHHHhhcccCccchHhHHH
Q 025822 203 DEAISELDTLNEESYKDSTL 222 (247)
Q Consensus 203 d~ai~~ld~l~ee~~~ds~~ 222 (247)
+.|... +-+.+.|+-+..
T Consensus 104 qkAv~~--~P~ne~Y~ksLe 121 (186)
T PF06552_consen 104 QKAVDE--DPNNELYRKSLE 121 (186)
T ss_dssp HHHHHH---TT-HHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHH
Confidence 888753 234456766543
No 57
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=35.18 E-value=3.2e+02 Score=24.18 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLD 37 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~ 37 (247)
.-.+..|+++-.+|+|+=+..++.++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 456789999999999999999998887644
No 58
>COG4499 Predicted membrane protein [Function unknown]
Probab=35.09 E-value=63 Score=30.93 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhcccCccchHhH
Q 025822 174 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLNEESYKDS 220 (247)
Q Consensus 174 LgL~LN~SVF~yEi~~~~~~A~~iak~a-----fd~ai~~ld~l~ee~~~ds 220 (247)
|-+++=|.+|+|-+..-.+.||.-|.+| |++.+..++.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 3367889999999999999999999999 5889999998887765544
No 59
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.78 E-value=1.7e+02 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHh
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~ 35 (247)
.++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566677888999999998888774
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=33.31 E-value=6.5e+02 Score=27.21 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~ 72 (247)
..+.+|++.-..|+|++++..++++++.+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 35788899999999999999999999766543211111111111 1234455566666654443
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.95 E-value=6.2e+02 Score=27.31 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhh--cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 153 ~~Y~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
++|+.|+.+-.. ...|.||.-|...-||=+| -||.+.++.+|-.|+..+..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhh
Confidence 455555544322 5788999988888776444 39999999999999988743
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=31.61 E-value=3.9e+02 Score=24.04 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=11.8
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHh
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAK 35 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~ 35 (247)
.++.+..+.|+|+++..+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 334444444555555555555444
No 63
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=31.46 E-value=4.2e+02 Score=24.45 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..+|.+..+.|+|++++..+.+++..+|.. ..=...+..+|-. .+....|.+.+..
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 345677788888888888888888888877653 3334455555543 4666666666654
No 64
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=31.28 E-value=1.9e+02 Score=22.67 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 4555555555555544 589999999999887654
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=31.08 E-value=2e+02 Score=20.60 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDV--ELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~--~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.+.-.+....+.|+|+++++.+.+++..+| .+..+-+..+..+|-. .+....+...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~ 64 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence 344556666666777777777777775543 3344444445444322 2223334444443
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=30.76 E-value=2.2e+02 Score=23.88 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 227 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlL 227 (247)
-++|.++|--|..+... .|.-|.+.| -.|=.+|++.+|.. +|..|+..-+ ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 45566666666655432 232344444 23445789888776 8888876311 122233366677777
Q ss_pred HhhHh
Q 025822 228 RDNLT 232 (247)
Q Consensus 228 rdNl~ 232 (247)
..|..
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 66654
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.41 E-value=1.9e+02 Score=20.67 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL--TVEERNLLSVGY 52 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L--t~eERnLls~ay 52 (247)
...++.+..+.|+|+.++..++.++...|.- ..+=...+..+|
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 4556677777777777777777766554432 233334444444
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=30.28 E-value=1.4e+02 Score=27.71 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=11.2
Q ss_pred hhhHHHHHHHhCChHHHHHHHHHH
Q 025822 178 LNFSVFYYEIMNSPERACHLAKQA 201 (247)
Q Consensus 178 LN~SVF~yEi~~~~~~A~~iak~a 201 (247)
++.++.++. +|+.+.|+...++|
T Consensus 74 ~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 74 LRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHH
Confidence 344443433 46666666544433
No 69
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.36 E-value=2.1e+02 Score=20.17 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh-hhhCchHHHHHHHHHHHHH
Q 025822 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGNEVNAKRIKEYRQKV 92 (247)
Q Consensus 25 Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~-~~~~~~~~~~~i~~yk~ki 92 (247)
....-+...+..-+.++.++|+-...-....+..-..-+..+.. |-+. ...........++.||..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~-E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMEL-EVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34444444444334555578877777777777776665555532 2111 1111122445666666554
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=29.24 E-value=1.3e+02 Score=25.45 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=38.5
Q ss_pred HhHHHHHHH-HHHhCC--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKL-AEQAER--YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~akl-aeq~er--y~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+-+..+|.+ ..+.|+ ++++...+.+++..+|. +.+=+.+|..++-. .+....|......
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 445667775 467787 58999999999988776 44566667666543 4445455444443
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=29.03 E-value=7.6e+02 Score=26.61 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHH
Q 025822 11 VYVAKLAEQAERYDEMVDAMKNVA 34 (247)
Q Consensus 11 ~~~aklaeq~ery~Dm~~~mk~~i 34 (247)
+.++.+..+.|+|++++...+++.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 344555555666666666665544
No 72
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=28.63 E-value=50 Score=20.74 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=26.6
Q ss_pred cccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025822 130 DYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT 169 (247)
Q Consensus 130 DyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt 169 (247)
|.|--++|+.-..++. ++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4555567776655443 578889999999988778773
No 73
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=28.05 E-value=60 Score=27.93 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 147 ~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.-+.|.++|++|..- .-+| ..++...+|+.|||..||.=.
T Consensus 14 ~Ye~A~~~Ye~av~n---g~~~-----------------q~~Kql~KA~NIAKse~drda 53 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GSSP-----------------QELKQLKKAMNIAKSEFDRDA 53 (199)
T ss_dssp HHHHHHHHHHHHHHC---T--H-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCCH-----------------HHHHHHHHHHhHHHHHHhHHH
Confidence 346889999998751 1121 235778899999999998633
No 74
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.61 E-value=1.3e+02 Score=30.86 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchh-hhhhhhHHHHHHHhCC
Q 025822 147 AAANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMNS 190 (247)
Q Consensus 147 ~~~~a~~~Y~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yEi~~~ 190 (247)
--++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--++
T Consensus 655 dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 655 DGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 3567899999999999999999988777 4588988889985443
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.14 E-value=1.1e+02 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 025822 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (247)
Q Consensus 11 ~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~ 58 (247)
|-+.+|.-+-|.|+-+|+....+.+.||++..|--..|..||..+=.+
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 567888888999999999999999999999999999999999876443
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=25.96 E-value=1.3e+02 Score=23.82 Aligned_cols=58 Identities=7% Similarity=-0.057 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.+..++....+-|+|++.+.++++++..+|. +.+-...+..++-. .+....+...+..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~-~g~~~~A~~~y~~ 83 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMM-LKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 3556778888889999999999998887666 44444555544433 4555555555543
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=25.79 E-value=3.5e+02 Score=21.68 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTA 161 (247)
Q Consensus 149 ~~a~~~Y~~A~~~ 161 (247)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688888888865
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=25.74 E-value=1.5e+02 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+-..+++++..+.|++++++.+.++++..+|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34678999999999999999999999988764
No 79
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=25.52 E-value=8.8e+02 Score=26.23 Aligned_cols=55 Identities=11% Similarity=-0.101 Sum_probs=35.2
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.++.++-..|+|++++..+++++..+|.-. .=...|..+|.. .+....+.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345666778999999999999998877532 233344444432 3445555555544
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.09 E-value=4e+02 Score=22.15 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt--~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (247)
+.+..++....+.|+|++++..+.+++..+|.-. .+-+..+..+|-.. +....|...+..+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 4566777888889999999999999998776532 33445555554432 555666666655443
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=24.84 E-value=4.9e+02 Score=23.04 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=27.4
Q ss_pred hhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 5 ~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+.++-....+-++-..|+++.+..++.++++..|.
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667777888888889999998888888876553
No 82
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.83 E-value=4.9e+02 Score=23.00 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhh-hhhhhHHHHHHHhCChHHHHHHHHHHHHHHH--HhhcccCccchHhHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLNEESYKDSTLIM 224 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~iak~afd~ai--~~ld~l~ee~~~ds~~il 224 (247)
.+.|.-.|.+|-.... .++|....+|+ +.+|+++-.+.--++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3568888888887765 78888888888 7789999999863499999999999987632 223333333222235566
Q ss_pred HHHHhhHhhhccC
Q 025822 225 QLLRDNLTLWTSD 237 (247)
Q Consensus 225 qlLrdNl~~W~~~ 237 (247)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7776666666543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.72 E-value=1e+02 Score=27.68 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|.+.|++|+.++.+ + =-+--||.-|++.. |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~p~-----~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLAPN-----N---GDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcCCC-----c---cchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 46789999999866432 2 22456899999995 699988776555543
No 84
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=24.14 E-value=1.4e+02 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 025822 23 YDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (247)
Q Consensus 23 y~Dm~~~mk~~i~~~~~Lt~eERnLls~ayK 53 (247)
.=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 40 tID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 40 TIDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 3355555544 4589999999999977643
No 85
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=24.12 E-value=3.7e+02 Score=21.35 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=64.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAK 76 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~----------~-~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~ 76 (247)
...+-.|+..-..|.|+-++-.-.|.++. + ++-|+.=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 34456677777889999998887777642 3 77788888888888764 333333333333333322111
Q ss_pred CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 77 GNEV--NAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 77 ~~~~--~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
.-+. .......|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011 0112466777888889999999999998664
No 86
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.81 E-value=92 Score=31.61 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=38.8
Q ss_pred hcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 127 MKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 127 mkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+-++.||-+.....---|++--+.|+-.|++|++ +||.-.-++--...+++. +|..++|+.+-.+|+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 3444444443333222233334455555555542 456656666666677655 799999999988884
No 87
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.72 E-value=5.3e+02 Score=23.00 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~ 38 (247)
+.-+|.+.++.+.|+++++-.|++.+.+|
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 34457777777777777777777766544
No 88
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=23.55 E-value=5.6e+02 Score=23.31 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-hhhhhhHHHHHHHHHh
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN-VIGARRASWRILSSIE 70 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn-~i~~~R~s~R~l~~~e 70 (247)
+..+|....-++|++..+..++++++..|-=.+.-+.|+-..+++ -.+.-..+++.++...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 445777777789999999999999988766555566666666655 4555555555555543
No 89
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=23.51 E-value=4.7e+02 Score=22.84 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhhhh-----hHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025822 44 ERNLLSVGYKNVIGAR-----RASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (247)
Q Consensus 44 ERnLls~ayKn~i~~~-----R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 110 (247)
+...+-+-..++|+.+ |.|+++|...+- +++..+.+++...|.++.++|++.
T Consensus 110 di~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 110 DIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888876 567777754221 133334445555566666665443
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=23.41 E-value=3.2e+02 Score=28.04 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHhhh-hhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 025822 40 LTVEERNLLSVGYKNV-IGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAG 118 (247)
Q Consensus 40 Lt~eERnLls~ayKn~-i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~ 118 (247)
|++.|-.||-.+.|.. ..+++.+++.+.+|..+....|.+-...-+.-+.--=. ++....|-.-|-. +.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-------~ea~~~vr~glr~---d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-------EEAYELVRLGLRN---DL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-------HHHHHHHHHHhcc---Cc
Confidence 7889999999999985 55679999999998876544444322211111100001 2222333222221 22
Q ss_pred chhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcC------------------------------CC
Q 025822 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL------------------------------PP 168 (247)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L------------------------------~p 168 (247)
.| -++|+.-|=+||---+ =..|..||+.|+.+.+.++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~dK~----------Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKK----------YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhh----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3566666666653221 1356777777765543222 22
Q ss_pred CCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHH
Q 025822 169 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIM 224 (247)
Q Consensus 169 t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~il 224 (247)
.|.-++|+|+. ++ ..|+...|..|..+-..... ..+|-+.|.-+..+|
T Consensus 142 ~ra~w~~~Avs----~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 142 QRASWIGFAVA----QH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL 189 (700)
T ss_pred hHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH
Confidence 23333333333 33 35888999988776555443 345556666555544
No 91
>PF13041 PPR_2: PPR repeat family
Probab=23.18 E-value=2e+02 Score=18.01 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.8
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 025822 14 AKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (247)
Q Consensus 14 aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ay 52 (247)
..-.-+.|+++++.+.++++.+.+-..+.---+.|-.++
T Consensus 10 i~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 10 ISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344557899999999999999888777766555554443
No 92
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.07 E-value=5e+02 Score=23.63 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccch
Q 025822 148 AANSMKAYETATTAAEAD----------LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESY 217 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~----------L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~ 217 (247)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.=+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345667777777654332 233355788899999999999 599999999999887776632222222221
Q ss_pred HhHHHHHHHHHhhHhhhccCCCC
Q 025822 218 KDSTLIMQLLRDNLTLWTSDIPE 240 (247)
Q Consensus 218 ~ds~~ilqlLrdNl~~W~~~~~~ 240 (247)
. +.++.=-.=|.++.+-
T Consensus 197 ~------~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPR 213 (321)
T ss_pred H------HHHHHHHHHhCcCCCC
Confidence 1 4444444778886553
No 93
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.29 E-value=1.5e+02 Score=16.21 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 13 VAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 13 ~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+.+-.-+.|+++++.+.++++...+-.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 344556789999999999998766543
No 94
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.24 E-value=1e+02 Score=30.62 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHH------HHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~------yEi~~~~~~A~~iak~afd 203 (247)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 95
>PHA02103 hypothetical protein
Probab=21.87 E-value=24 Score=27.66 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.3
Q ss_pred cccccccchhcccC
Q 025822 128 KGDYYRYLAEFKFG 141 (247)
Q Consensus 128 kgDyyRYlaE~~~~ 141 (247)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 57999999986655
No 96
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=21.63 E-value=1e+02 Score=24.09 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=29.2
Q ss_pred hCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 025822 188 MNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (247)
Q Consensus 188 ~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 236 (247)
.+....+.++=..+|..+...|....+..-. +..-++-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 3344444555566777777777655422222 22223999999999984
No 97
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.49 E-value=91 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHhCChHHHHHHHHHHHh
Q 025822 17 AEQAERYDEMVDAMKNVAK 35 (247)
Q Consensus 17 aeq~ery~Dm~~~mk~~i~ 35 (247)
.-|.|+|+++.+|+++++.
T Consensus 33 llqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3467999999999999884
No 98
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=33 Score=29.21 Aligned_cols=57 Identities=37% Similarity=0.556 Sum_probs=43.7
Q ss_pred hcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhh
Q 025822 164 ADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTL 233 (247)
Q Consensus 164 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~ 233 (247)
...||++-+.|-|.-|.-+ -| +.++|..+.++-+..|...++.+.++ ++.|||++|-
T Consensus 104 a~V~~~~kV~LWLGAnVMl-EY----~leEAeaLLkknl~sa~k~l~~~~~D--------ldfLrdQvTT 160 (187)
T KOG3313|consen 104 ASVPPTDKVYLWLGANVML-EY----DLEEAEALLKKNLTSAVKSLDVLEED--------LDFLRDQVTT 160 (187)
T ss_pred eecCCcCeEEEEecceeEE-Ee----cHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHhhcee
Confidence 4689999988876666322 11 45899999999999999988766554 7899999873
No 99
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.55 E-value=2.1e+02 Score=23.38 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhH-HHHHHHhCC---hHHHHHHHHHHHHHHHHhhcc
Q 025822 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFS-VFYYEIMNS---PERACHLAKQAFDEAISELDT 211 (247)
Q Consensus 150 ~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~S-VF~yEi~~~---~~~A~~iak~afd~ai~~ld~ 211 (247)
....+|-+++.-....++...|+.++..|.+. ||.-+--.+ .+..-.....++++|++.+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555678888899999988886 444122112 223446788999999987754
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=20.50 E-value=5.9e+02 Score=27.43 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=54.2
Q ss_pred hhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 025822 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (247)
Q Consensus 5 ~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (247)
+.++-+.++|+...++|+|.+............|.=+.=.-|+..|..|-.-+.+|.--|++..+..
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4567888999999999999999999999888777766678888888888877777776666655443
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=20.36 E-value=6e+02 Score=22.43 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL-DVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~-~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
-+.++|.+....|++++.......+... ...+|.-|+..+....--..+..-.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888888889999988888777754 35677777766543333333444445554443
No 102
>PRK11820 hypothetical protein; Provisional
Probab=20.25 E-value=2.4e+02 Score=25.71 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=39.0
Q ss_pred HHHHHHHH-HHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccc
Q 025822 152 MKAYETAT-TAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTL 212 (247)
Q Consensus 152 ~~~Y~~A~-~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l 212 (247)
..+|-+++ +++ ..++...|+.|.-.|.+.--..+-..+.+..-.....|++.|++.+...
T Consensus 85 ~~~y~~~l~~l~-~~~~~~~~~~l~~ll~~p~v~~~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELK-AELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHH-HhcCCCCCCCHHHHhCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 555 4565445999998887653222223355666678889999999877644
Done!