Query 025822
Match_columns 247
No_of_seqs 115 out of 437
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uzd_A 14-3-3 protein gamma; s 100.0 3.5E-97 1E-101 650.4 23.0 237 6-242 3-241 (248)
2 3ubw_A 14-3-3E, 14-3-3 protein 100.0 7.7E-97 3E-101 650.7 23.8 237 1-237 25-261 (261)
3 3iqu_A 14-3-3 protein sigma; s 100.0 8.4E-97 3E-101 644.3 21.1 231 5-235 6-236 (236)
4 1o9d_A 14-3-3-like protein C; 100.0 2.1E-95 7E-100 644.0 23.3 242 3-244 4-247 (260)
5 2br9_A 14-3-3E, 14-3-3 protein 100.0 1.9E-94 6.4E-99 630.5 23.7 233 4-236 2-234 (234)
6 2npm_A 14-3-3 domain containin 100.0 2.1E-93 7.1E-98 630.8 23.6 233 4-237 25-260 (260)
7 3efz_A 14-3-3 protein; 14-3-3, 100.0 7.3E-90 2.5E-94 607.8 15.3 227 6-240 28-261 (268)
8 2o8p_A 14-3-3 domain containin 100.0 9.6E-82 3.3E-86 545.3 19.9 215 6-232 2-226 (227)
9 3edt_B KLC 2, kinesin light ch 95.8 0.13 4.6E-06 41.6 12.0 59 148-207 143-201 (283)
10 3vtx_A MAMA; tetratricopeptide 95.5 0.62 2.1E-05 35.8 16.2 160 9-203 7-169 (184)
11 3nf1_A KLC 1, kinesin light ch 95.2 1 3.5E-05 36.9 19.7 185 8-207 28-227 (311)
12 3u3w_A Transcriptional activat 93.5 3 0.0001 35.0 16.7 57 149-207 172-228 (293)
13 3n71_A Histone lysine methyltr 93.0 0.99 3.4E-05 42.5 12.1 100 94-207 326-425 (490)
14 3hym_B Cell division cycle pro 92.6 3.5 0.00012 33.9 13.9 46 148-202 252-297 (330)
15 3ro2_A PINS homolog, G-protein 92.4 3.8 0.00013 33.4 17.9 189 8-206 6-214 (338)
16 3qwp_A SET and MYND domain-con 91.8 0.27 9.1E-06 45.5 6.4 58 149-207 346-403 (429)
17 4g1t_A Interferon-induced prot 91.8 3.1 0.0001 36.8 13.3 49 149-202 351-399 (472)
18 3qww_A SET and MYND domain-con 91.5 0.77 2.6E-05 42.5 9.2 100 94-207 315-414 (433)
19 3fp2_A TPR repeat-containing p 91.5 7.3 0.00025 34.7 16.3 49 148-205 444-492 (537)
20 3u4t_A TPR repeat-containing p 91.1 5 0.00017 32.2 13.3 53 150-203 197-249 (272)
21 3edt_B KLC 2, kinesin light ch 90.9 1.1 3.6E-05 36.1 8.5 57 149-206 60-116 (283)
22 1fch_A Peroxisomal targeting s 90.9 5.5 0.00019 33.5 13.5 58 8-67 99-156 (368)
23 4i17_A Hypothetical protein; T 90.5 4.2 0.00014 32.2 11.8 60 8-68 8-67 (228)
24 4a1s_A PINS, partner of inscut 90.4 7.9 0.00027 33.3 21.0 190 8-206 49-254 (411)
25 3qww_A SET and MYND domain-con 90.3 1.1 3.8E-05 41.5 9.0 58 149-207 315-372 (433)
26 3ulq_A Response regulator aspa 89.9 8.9 0.0003 33.0 15.8 175 12-206 108-295 (383)
27 3n71_A Histone lysine methyltr 89.6 1.3 4.5E-05 41.6 9.0 58 149-207 326-383 (490)
28 3ulq_A Response regulator aspa 89.0 8.8 0.0003 33.1 13.5 74 121-206 142-215 (383)
29 2gw1_A Mitochondrial precursor 89.0 11 0.00037 33.2 14.3 55 148-203 205-265 (514)
30 4abn_A Tetratricopeptide repea 88.8 14 0.00047 33.7 16.4 173 8-203 103-286 (474)
31 3ro3_A PINS homolog, G-protein 88.1 5.6 0.00019 28.4 12.6 55 148-205 105-159 (164)
32 4gcn_A Protein STI-1; structur 87.1 1.6 5.3E-05 32.2 6.4 47 149-204 25-71 (127)
33 3qwp_A SET and MYND domain-con 86.8 0.58 2E-05 43.2 4.5 58 149-207 304-361 (429)
34 3sf4_A G-protein-signaling mod 86.6 14 0.00046 31.3 20.8 189 9-206 11-218 (406)
35 2y4t_A DNAJ homolog subfamily 85.9 16 0.00056 31.5 14.3 47 148-203 311-357 (450)
36 4eqf_A PEX5-related protein; a 85.9 15 0.00051 31.0 16.6 59 8-68 66-124 (365)
37 2q7f_A YRRB protein; TPR, prot 85.4 11 0.00039 29.3 15.6 59 8-68 58-116 (243)
38 4a1s_A PINS, partner of inscut 85.3 17 0.00057 31.1 16.7 178 10-206 89-294 (411)
39 3q15_A PSP28, response regulat 85.2 3.5 0.00012 35.8 8.7 75 119-206 98-172 (378)
40 3ieg_A DNAJ homolog subfamily 85.1 15 0.0005 30.3 18.7 47 148-203 288-334 (359)
41 2gw1_A Mitochondrial precursor 84.9 19 0.00066 31.5 15.1 171 9-204 306-478 (514)
42 2qfc_A PLCR protein; TPR, HTH, 84.5 16 0.00055 30.3 18.7 189 8-218 76-276 (293)
43 3u4t_A TPR repeat-containing p 84.1 6.1 0.00021 31.7 9.2 59 8-68 4-62 (272)
44 2y4t_A DNAJ homolog subfamily 84.1 20 0.00068 31.0 15.7 168 10-203 146-323 (450)
45 4b4t_Q 26S proteasome regulato 83.3 22 0.00074 30.7 17.2 184 10-207 58-248 (434)
46 3q15_A PSP28, response regulat 83.2 21 0.00073 30.6 15.5 54 148-205 238-291 (378)
47 2ho1_A Type 4 fimbrial biogene 83.1 15 0.00052 28.9 14.4 165 8-203 38-203 (252)
48 2xpi_A Anaphase-promoting comp 82.9 27 0.00091 31.6 17.8 47 148-203 532-578 (597)
49 3qky_A Outer membrane assembly 82.2 18 0.00062 29.1 17.9 65 6-71 14-80 (261)
50 2xpi_A Anaphase-promoting comp 81.9 29 0.001 31.3 18.6 55 148-204 491-545 (597)
51 1fch_A Peroxisomal targeting s 81.6 22 0.00075 29.7 17.4 58 8-67 65-122 (368)
52 2pl2_A Hypothetical conserved 81.1 19 0.00064 28.6 12.3 58 8-67 6-63 (217)
53 3sf4_A G-protein-signaling mod 80.7 24 0.00083 29.6 19.3 178 9-206 49-258 (406)
54 4eqf_A PEX5-related protein; a 80.5 25 0.00085 29.6 15.5 59 8-68 100-158 (365)
55 3rkv_A Putative peptidylprolyl 80.2 2 7E-05 32.4 4.5 54 149-203 28-91 (162)
56 3ro2_A PINS homolog, G-protein 80.1 22 0.00074 28.7 18.3 55 149-206 200-254 (338)
57 4gyw_A UDP-N-acetylglucosamine 79.8 48 0.0016 32.4 16.4 167 7-209 9-179 (723)
58 2vq2_A PILW, putative fimbrial 79.3 19 0.00063 27.4 15.5 167 8-204 9-176 (225)
59 4gco_A Protein STI-1; structur 79.1 5.2 0.00018 29.3 6.4 46 149-203 30-75 (126)
60 3u3w_A Transcriptional activat 78.6 8.4 0.00029 32.1 8.3 90 102-205 93-185 (293)
61 1xnf_A Lipoprotein NLPI; TPR, 78.5 23 0.00079 28.0 12.1 57 9-67 45-101 (275)
62 3hym_B Cell division cycle pro 78.2 26 0.00088 28.4 17.0 56 148-204 209-265 (330)
63 3ieg_A DNAJ homolog subfamily 78.1 27 0.00092 28.6 17.3 168 11-204 124-301 (359)
64 3ro3_A PINS homolog, G-protein 77.6 5.9 0.0002 28.3 6.3 55 149-206 26-80 (164)
65 1elr_A TPR2A-domain of HOP; HO 76.8 11 0.00039 25.8 7.5 53 149-203 55-107 (131)
66 3cv0_A Peroxisome targeting si 76.7 28 0.00097 28.1 15.6 44 8-52 22-65 (327)
67 2qfc_A PLCR protein; TPR, HTH, 76.7 4.6 0.00016 33.7 6.1 55 149-205 172-226 (293)
68 2ifu_A Gamma-SNAP; membrane fu 76.5 24 0.00084 29.5 10.8 52 148-202 171-222 (307)
69 2q7f_A YRRB protein; TPR, prot 75.9 25 0.00087 27.1 10.6 59 9-69 25-83 (243)
70 3fp2_A TPR repeat-containing p 74.6 45 0.0015 29.4 16.7 54 150-203 213-271 (537)
71 3uq3_A Heat shock protein STI1 74.4 28 0.00097 27.0 18.1 57 8-67 6-62 (258)
72 4g1t_A Interferon-induced prot 74.0 6.2 0.00021 34.7 6.5 53 149-202 68-121 (472)
73 4gcn_A Protein STI-1; structur 73.2 7.7 0.00026 28.3 5.9 52 149-202 59-110 (127)
74 2l6j_A TPR repeat-containing p 72.6 11 0.00036 25.6 6.3 45 149-202 21-65 (111)
75 2e2e_A Formate-dependent nitri 71.8 29 0.00098 25.9 11.7 46 149-203 98-143 (177)
76 3nf1_A KLC 1, kinesin light ch 71.6 37 0.0013 27.2 19.0 181 9-204 71-307 (311)
77 3lf9_A 4E10_D0_1IS1A_001_C (T1 71.2 32 0.0011 26.3 10.2 86 21-111 11-103 (121)
78 1na3_A Designed protein CTPR2; 70.9 14 0.00049 23.9 6.4 46 149-203 26-71 (91)
79 3k9i_A BH0479 protein; putativ 70.5 13 0.00043 26.3 6.4 47 149-204 44-90 (117)
80 3uq3_A Heat shock protein STI1 70.0 36 0.0012 26.4 15.3 32 8-39 80-111 (258)
81 3gw4_A Uncharacterized protein 69.7 12 0.0004 28.4 6.5 55 149-205 83-137 (203)
82 2pl2_A Hypothetical conserved 69.6 39 0.0013 26.6 16.0 45 8-53 40-84 (217)
83 3upv_A Heat shock protein STI1 69.4 26 0.00089 24.5 11.2 48 149-205 55-102 (126)
84 2kck_A TPR repeat; tetratricop 68.1 17 0.00057 24.2 6.4 46 149-203 23-68 (112)
85 1hz4_A MALT regulatory protein 68.0 13 0.00046 31.5 7.1 55 149-204 110-164 (373)
86 3ma5_A Tetratricopeptide repea 66.9 28 0.00095 23.9 11.1 58 8-67 8-65 (100)
87 2xev_A YBGF; tetratricopeptide 66.7 21 0.00072 24.8 7.0 49 149-203 56-104 (129)
88 3sz7_A HSC70 cochaperone (SGT) 66.6 20 0.00068 26.7 7.2 46 149-203 62-107 (164)
89 2kc7_A BFR218_protein; tetratr 66.3 20 0.00068 23.9 6.5 47 149-203 17-63 (99)
90 2hr2_A Hypothetical protein; a 64.3 22 0.00076 28.2 7.2 54 148-203 27-85 (159)
91 2dba_A Smooth muscle cell asso 64.1 13 0.00046 26.3 5.5 49 149-203 45-93 (148)
92 2kat_A Uncharacterized protein 63.7 33 0.0011 23.6 12.1 59 8-68 20-78 (115)
93 2fbn_A 70 kDa peptidylprolyl i 63.1 48 0.0016 25.3 11.7 31 9-39 40-70 (198)
94 3ma5_A Tetratricopeptide repea 62.8 34 0.0011 23.4 9.4 72 149-235 24-95 (100)
95 3upv_A Heat shock protein STI1 62.8 22 0.00074 25.0 6.4 47 149-204 21-67 (126)
96 3bee_A Putative YFRE protein; 62.7 8.9 0.00031 27.2 4.2 31 9-39 45-75 (93)
97 4gco_A Protein STI-1; structur 62.4 21 0.00073 25.9 6.4 46 149-203 64-109 (126)
98 2vgx_A Chaperone SYCD; alterna 61.7 25 0.00086 26.2 6.9 47 149-204 72-118 (148)
99 3cv0_A Peroxisome targeting si 61.0 63 0.0022 26.0 16.8 32 8-39 56-87 (327)
100 2lni_A Stress-induced-phosphop 60.5 26 0.00089 24.1 6.4 47 149-204 67-113 (133)
101 2ho1_A Type 4 fimbrial biogene 59.3 61 0.0021 25.2 15.5 61 8-70 72-132 (252)
102 1qqe_A Vesicular transport pro 58.9 76 0.0026 26.2 13.5 52 148-203 134-186 (292)
103 3sz7_A HSC70 cochaperone (SGT) 58.8 52 0.0018 24.2 11.2 31 9-39 13-43 (164)
104 1lyp_A CAP18; lipopolysacchari 58.8 21 0.00072 20.3 4.3 26 83-108 4-29 (32)
105 2xcb_A PCRH, regulatory protei 58.7 48 0.0017 23.9 8.6 48 149-205 69-116 (142)
106 3vtx_A MAMA; tetratricopeptide 58.4 25 0.00086 26.3 6.4 46 149-203 22-67 (184)
107 3as5_A MAMA; tetratricopeptide 58.2 49 0.0017 23.8 15.1 57 10-68 11-67 (186)
108 2kat_A Uncharacterized protein 57.0 37 0.0013 23.3 6.8 49 149-206 36-84 (115)
109 4ga2_A E3 SUMO-protein ligase 56.4 29 0.001 25.7 6.4 32 9-40 33-64 (150)
110 1elw_A TPR1-domain of HOP; HOP 55.4 31 0.001 22.9 5.9 45 149-202 55-99 (118)
111 4gfq_A Ribosome-recycling fact 55.0 28 0.00097 29.1 6.5 69 38-111 127-199 (209)
112 3k9i_A BH0479 protein; putativ 54.7 50 0.0017 22.9 8.5 59 8-68 28-86 (117)
113 1elw_A TPR1-domain of HOP; HOP 54.5 40 0.0014 22.3 6.4 47 149-204 21-67 (118)
114 2vyi_A SGTA protein; chaperone 54.3 39 0.0013 22.8 6.4 47 149-204 63-109 (131)
115 2vyi_A SGTA protein; chaperone 54.2 39 0.0013 22.8 6.4 47 149-204 29-75 (131)
116 1w3b_A UDP-N-acetylglucosamine 54.2 98 0.0033 26.0 14.5 32 9-40 69-100 (388)
117 1qqe_A Vesicular transport pro 53.9 29 0.00099 28.8 6.6 53 149-204 54-106 (292)
118 2ifu_A Gamma-SNAP; membrane fu 53.7 95 0.0033 25.7 14.5 54 148-205 131-185 (307)
119 1xnf_A Lipoprotein NLPI; TPR, 53.5 59 0.002 25.5 8.2 48 148-204 93-140 (275)
120 1a17_A Serine/threonine protei 52.9 38 0.0013 24.3 6.4 47 149-204 64-110 (166)
121 2dba_A Smooth muscle cell asso 52.0 41 0.0014 23.5 6.4 46 149-203 82-127 (148)
122 4ga2_A E3 SUMO-protein ligase 51.9 38 0.0013 25.1 6.4 46 149-203 48-93 (150)
123 1ge9_A Ribosome recycling fact 50.9 60 0.002 26.5 7.7 71 37-111 104-174 (184)
124 1na0_A Designed protein CTPR3; 50.2 51 0.0017 21.9 6.4 46 149-203 26-71 (125)
125 1ihg_A Cyclophilin 40; ppiase 50.1 12 0.00041 33.1 3.7 54 149-203 240-301 (370)
126 1a17_A Serine/threonine protei 48.7 47 0.0016 23.8 6.4 47 149-204 30-76 (166)
127 2xcb_A PCRH, regulatory protei 48.6 73 0.0025 22.9 10.7 32 8-39 19-50 (142)
128 1na0_A Designed protein CTPR3; 48.3 56 0.0019 21.7 6.4 47 149-204 60-106 (125)
129 1w3b_A UDP-N-acetylglucosamine 48.3 1.2E+02 0.0042 25.4 14.3 44 8-52 34-77 (388)
130 1dd5_A Ribosome recycling fact 48.3 45 0.0015 27.3 6.6 69 38-111 103-175 (185)
131 2h6f_A Protein farnesyltransfe 47.4 1.5E+02 0.0051 26.1 13.0 44 10-54 203-246 (382)
132 3gyz_A Chaperone protein IPGC; 47.2 90 0.0031 23.5 9.7 58 7-66 36-93 (151)
133 2kck_A TPR repeat; tetratricop 46.8 58 0.002 21.3 8.0 29 11-39 10-38 (112)
134 1hh8_A P67PHOX, NCF-2, neutrop 46.5 49 0.0017 25.2 6.4 46 149-203 54-99 (213)
135 1elr_A TPR2A-domain of HOP; HO 46.3 60 0.0021 21.8 6.4 41 9-51 81-121 (131)
136 1ise_A Ribosome recycling fact 46.3 47 0.0016 27.2 6.4 68 38-110 103-174 (185)
137 3urz_A Uncharacterized protein 45.8 49 0.0017 25.8 6.4 33 7-39 4-36 (208)
138 3gw4_A Uncharacterized protein 45.6 90 0.0031 23.1 16.2 57 148-207 123-179 (203)
139 2h6f_A Protein farnesyltransfe 45.3 1.6E+02 0.0055 25.9 13.4 60 7-68 97-157 (382)
140 1wqg_A Ribosome recycling fact 45.2 1.2E+02 0.0042 24.6 8.8 68 38-110 103-174 (185)
141 2v5f_A Prolyl 4-hydroxylase su 44.9 75 0.0026 22.0 7.0 53 149-203 22-74 (104)
142 1eh1_A Ribosome recycling fact 44.9 47 0.0016 27.2 6.2 73 38-111 104-176 (185)
143 1is1_A Ribosome recycling fact 44.4 49 0.0017 27.0 6.2 69 38-111 103-175 (185)
144 3gyz_A Chaperone protein IPGC; 43.7 32 0.0011 26.2 4.9 46 149-203 87-132 (151)
145 2ooe_A Cleavage stimulation fa 43.4 26 0.00087 31.8 4.9 53 148-209 62-114 (530)
146 2hr2_A Hypothetical protein; a 43.3 34 0.0012 27.1 5.0 78 149-232 74-154 (159)
147 1wao_1 Serine/threonine protei 43.3 43 0.0015 30.5 6.4 15 188-202 87-101 (477)
148 1kt0_A FKBP51, 51 kDa FK506-bi 42.9 31 0.001 31.2 5.3 53 149-203 285-345 (457)
149 1p5q_A FKBP52, FK506-binding p 42.8 17 0.00058 31.4 3.4 54 149-203 164-224 (336)
150 3as5_A MAMA; tetratricopeptide 42.4 68 0.0023 23.0 6.4 47 149-204 93-139 (186)
151 2ond_A Cleavage stimulation fa 42.0 1.4E+02 0.0049 24.5 14.5 30 10-39 102-131 (308)
152 4abn_A Tetratricopeptide repea 41.8 1.9E+02 0.0065 25.8 12.3 161 19-203 80-249 (474)
153 1na3_A Designed protein CTPR2; 41.1 50 0.0017 21.1 5.0 59 8-68 10-68 (91)
154 2kc7_A BFR218_protein; tetratr 40.9 43 0.0015 22.1 4.7 29 11-39 4-32 (99)
155 2r5s_A Uncharacterized protein 39.7 79 0.0027 23.6 6.6 33 8-40 109-141 (176)
156 2c2l_A CHIP, carboxy terminus 39.6 43 0.0015 27.8 5.4 50 153-206 52-103 (281)
157 2l6j_A TPR repeat-containing p 39.6 80 0.0027 20.8 6.2 33 8-40 5-37 (111)
158 1hxi_A PEX5, peroxisome target 38.8 1E+02 0.0034 21.8 8.3 59 8-68 18-76 (121)
159 3onj_A T-snare VTI1; helix, HA 38.6 1.1E+02 0.0037 22.0 9.3 78 23-101 10-90 (97)
160 1xi4_A Clathrin heavy chain; a 38.3 3.9E+02 0.013 29.0 13.2 23 179-201 1284-1306(1630)
161 2yhc_A BAMD, UPF0169 lipoprote 37.9 1.4E+02 0.0049 23.2 18.8 62 8-70 5-68 (225)
162 2vq2_A PILW, putative fimbrial 35.1 1.4E+02 0.0047 22.2 15.9 63 8-71 43-105 (225)
163 3ub0_A Non-structural protein 34.7 29 0.00099 28.6 3.2 39 148-206 19-57 (199)
164 1hh8_A P67PHOX, NCF-2, neutrop 34.3 63 0.0022 24.5 5.3 53 149-202 88-148 (213)
165 1hxi_A PEX5, peroxisome target 34.0 89 0.003 22.1 5.8 28 12-39 56-83 (121)
166 2fbn_A 70 kDa peptidylprolyl i 32.9 1.1E+02 0.0036 23.2 6.4 60 8-69 89-148 (198)
167 2g0u_A Type III secretion syst 32.5 19 0.00066 26.3 1.7 60 118-184 4-67 (92)
168 1zu2_A Mitochondrial import re 32.5 81 0.0028 24.8 5.6 94 128-235 42-142 (158)
169 3qky_A Outer membrane assembly 32.1 1.9E+02 0.0063 22.8 15.8 64 8-71 53-125 (261)
170 2wh5_A Acyl-COA-binding domain 32.1 48 0.0016 24.6 3.9 36 21-56 10-46 (106)
171 2e2e_A Formate-dependent nitri 31.6 89 0.003 23.0 5.6 48 149-204 61-110 (177)
172 3qou_A Protein YBBN; thioredox 30.8 1.6E+02 0.0054 24.2 7.6 33 8-40 220-252 (287)
173 2wb7_A PT26-6P; extra chromoso 29.5 1.3E+02 0.0043 28.6 7.1 52 136-189 436-488 (526)
174 4gyw_A UDP-N-acetylglucosamine 28.8 93 0.0032 30.3 6.4 47 148-203 93-139 (723)
175 2yhc_A BAMD, UPF0169 lipoprote 28.6 2E+02 0.007 22.2 7.9 46 8-53 42-89 (225)
176 3caz_A BAR protein; thermo-aci 28.5 2.5E+02 0.0087 23.2 10.4 111 13-164 100-210 (294)
177 2xev_A YBGF; tetratricopeptide 26.6 1.5E+02 0.0052 20.0 10.0 58 10-68 5-64 (129)
178 2ond_A Cleavage stimulation fa 26.5 1.1E+02 0.0038 25.2 5.8 11 149-159 151-161 (308)
179 3rkv_A Putative peptidylprolyl 26.4 1.8E+02 0.0063 20.9 11.7 71 149-236 80-150 (162)
180 2if4_A ATFKBP42; FKBP-like, al 25.4 50 0.0017 28.3 3.5 49 149-203 196-258 (338)
181 3iyk_A VP5; icosahedral virus; 23.8 4E+02 0.014 25.1 9.3 189 21-229 121-337 (526)
182 3urz_A Uncharacterized protein 23.5 2.5E+02 0.0085 21.5 12.7 28 13-40 60-87 (208)
183 3u64_A Protein TP_0956; tetrat 22.7 98 0.0033 27.3 4.8 47 149-203 221-268 (301)
184 4h7y_A Dual specificity protei 22.2 78 0.0027 25.4 3.7 73 116-202 11-87 (161)
185 2c2l_A CHIP, carboxy terminus 21.8 1E+02 0.0035 25.3 4.7 31 8-38 5-35 (281)
186 1ya0_A SMG-7 transcript varian 20.7 26 0.00089 32.9 0.7 67 128-206 158-234 (497)
187 4i17_A Hypothetical protein; T 20.7 2.8E+02 0.0096 21.0 13.6 59 8-68 43-101 (228)
188 2crb_A Nuclear receptor bindin 20.3 2.6E+02 0.0088 20.4 8.0 36 12-58 17-55 (97)
No 1
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=100.00 E-value=3.5e-97 Score=650.40 Aligned_cols=237 Identities=62% Similarity=0.997 Sum_probs=223.7
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHH
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i 85 (247)
+|++++|+||||+|||||+||+.+||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.+++.+
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i 82 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMV 82 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999877888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--chhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHh
Q 025822 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASAG--ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (247)
Q Consensus 86 ~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~--eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~ 163 (247)
++||++|++||..+|++|+++||++|||.++++ |+||||+|||||||||+|||..|++|++++++|+++|++|+++|+
T Consensus 83 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~ 162 (248)
T 3uzd_A 83 RAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCC
Q 025822 164 ADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 242 (247)
Q Consensus 164 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~~~~ 242 (247)
++||||||||||||||||||||||+|++++||.||++|||+||+++|+|+|++|+|+|+||||||||||+|+++.++++
T Consensus 163 ~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlWts~~~~~~ 241 (248)
T 3uzd_A 163 EHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241 (248)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhcccCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999977665
No 2
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.7e-97 Score=650.71 Aligned_cols=237 Identities=75% Similarity=1.135 Sum_probs=227.8
Q ss_pred CCCchhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH
Q 025822 1 MASSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV 80 (247)
Q Consensus 1 ~~~~~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~ 80 (247)
|.++.+|++++|+||||+||||||||+++||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.
T Consensus 25 ~~~m~~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~ 104 (261)
T 3ubw_A 25 MGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED 104 (261)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHH
Q 025822 81 NAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATT 160 (247)
Q Consensus 81 ~~~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~ 160 (247)
+++.+++||++|++||..+|++|+++||++|||.++++|+||||+|||||||||+|||..|++|++++++|+++|++|++
T Consensus 105 ~~~~i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~ 184 (261)
T 3ubw_A 105 KLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD 184 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 025822 161 AAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (247)
Q Consensus 161 ~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~ 237 (247)
+|+++||||||+||||+||||||||||+|++++||.|||+|||+||+++|+|+|++|+|||+||||||||||+|+++
T Consensus 185 iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~eesykDstlImQLLRDNLtlWts~ 261 (261)
T 3ubw_A 185 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 261 (261)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=100.00 E-value=8.4e-97 Score=644.30 Aligned_cols=231 Identities=58% Similarity=0.938 Sum_probs=227.3
Q ss_pred hhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHH
Q 025822 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (247)
Q Consensus 5 ~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 84 (247)
.+|++++|+||||+||||||||+++||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.+++.
T Consensus 6 ~~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~ 85 (236)
T 3iqu_A 6 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPE 85 (236)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 025822 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (247)
Q Consensus 85 i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~ 164 (247)
+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++|++
T Consensus 86 i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~ 165 (236)
T 3iqu_A 86 VREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKK 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhc
Q 025822 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWT 235 (247)
Q Consensus 165 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~ 235 (247)
+||||||+||||+||||||||||+|++++||.+||+|||+|++++|+|+|++|+|||+||||||||||+|+
T Consensus 166 ~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlWt 236 (236)
T 3iqu_A 166 EMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWT 236 (236)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=100.00 E-value=2.1e-95 Score=643.97 Aligned_cols=242 Identities=70% Similarity=1.085 Sum_probs=224.5
Q ss_pred CchhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH
Q 025822 3 SSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLD--VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV 80 (247)
Q Consensus 3 ~~~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~--~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~ 80 (247)
++++|++++|+|||++|||||+||+++||++++.+ ++||.||||||||||||+||++|+|||+|++++|+++.+|++.
T Consensus 4 ~~~~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~ 83 (260)
T 1o9d_A 4 APTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEE 83 (260)
T ss_dssp -CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ccccHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHH
Confidence 56789999999999999999999999999999998 9999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHH
Q 025822 81 NAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATT 160 (247)
Q Consensus 81 ~~~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~ 160 (247)
+++.+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|++
T Consensus 84 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~ 163 (260)
T 1o9d_A 84 HVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQD 163 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCC
Q 025822 161 AAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPE 240 (247)
Q Consensus 161 ~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~~~ 240 (247)
+|+.+||||||+||||+||||||||||+|++++||.||++|||+|++++|+|+|++|+|+|+||||||||||+|+++.++
T Consensus 164 iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~EesykDstlImqLLRDNLtlWts~~~~ 243 (260)
T 1o9d_A 164 IATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQD 243 (260)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTC----
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHHhhhccCc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCC
Q 025822 241 DGGD 244 (247)
Q Consensus 241 ~~~~ 244 (247)
++++
T Consensus 244 ~~~~ 247 (260)
T 1o9d_A 244 DGAD 247 (260)
T ss_dssp ----
T ss_pred cccc
Confidence 6554
No 5
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=100.00 E-value=1.9e-94 Score=630.45 Aligned_cols=233 Identities=75% Similarity=1.138 Sum_probs=227.1
Q ss_pred chhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHH
Q 025822 4 SKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK 83 (247)
Q Consensus 4 ~~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 83 (247)
|++|++++|+|||++|||||+||+.+||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.+++
T Consensus 2 m~~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~ 81 (234)
T 2br9_A 2 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLK 81 (234)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHh
Q 025822 84 RIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (247)
Q Consensus 84 ~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~ 163 (247)
.+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++|+
T Consensus 82 ~i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~ 161 (234)
T 2br9_A 82 MIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAM 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 025822 164 ADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (247)
Q Consensus 164 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 236 (247)
.+||||||+||||+||||||||||+|++++||.+|++|||+|++++|+|+|++|+|+|+||||||||||+|++
T Consensus 162 ~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~eesykDstlImqLLrDNLtlWts 234 (234)
T 2br9_A 162 TELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (234)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=100.00 E-value=2.1e-93 Score=630.75 Aligned_cols=233 Identities=63% Similarity=0.997 Sum_probs=226.9
Q ss_pred chhHHhHHHHHHHHHHhCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH
Q 025822 4 SKERENFVYVAKLAEQAERYDEMVDAMKNVAKLD---VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV 80 (247)
Q Consensus 4 ~~~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~---~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~ 80 (247)
+++|++++|+|||++|||||+||+++||++++.+ ++||.||||||||||||+||++|+|||+|++++|+++.+|++.
T Consensus 25 ~~~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~ 104 (260)
T 2npm_A 25 VNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAED 104 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHH
Confidence 4579999999999999999999999999999998 9999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHH
Q 025822 81 NAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATT 160 (247)
Q Consensus 81 ~~~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~ 160 (247)
+++.+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|++
T Consensus 105 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~ 184 (260)
T 2npm_A 105 ASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATV 184 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 025822 161 AAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (247)
Q Consensus 161 ~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~ 237 (247)
+| .+||||||+||||+||||||||||+|++++||.||++|||+|++++|+|+|++|+|+|+||||||||||+|+++
T Consensus 185 iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~eesykDstlImqLLRDNLtlWts~ 260 (260)
T 2npm_A 185 VA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTAD 260 (260)
T ss_dssp HH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHHhccC
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=100.00 E-value=7.3e-90 Score=607.77 Aligned_cols=227 Identities=24% Similarity=0.410 Sum_probs=196.7
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh-hhhCc-hHHHH
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGN-EVNAK 83 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~-~~~~~-~~~~~ 83 (247)
+|++++|+|||++||||||||+++| ++.+++||.||||||||||||+||++|+|||+|++++|++ +.+|+ +..++
T Consensus 28 ~r~~lv~~AKLaeqaeRYddMv~~M---~e~~~eLs~EERNLLSvAYKNvIgarR~swRiissieqke~e~kg~~~~~~~ 104 (268)
T 3efz_A 28 KLSEGAYRAKLADMVGNYKDVIKVL---TESSDFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQ 104 (268)
T ss_dssp ------------------CHHHHHH---TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHH---HhcCCcCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhccCChHHHHH
Confidence 5999999999999999999999999 7889999999999999999999999999999999999999 67787 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHh
Q 025822 84 RIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (247)
Q Consensus 84 ~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~ 163 (247)
.+++||++|++||..+|++|+++||++|||.++++ ++|||+|||||||||+|||..|++|++++++|+++|++|+++|+
T Consensus 105 ~i~~yr~kie~EL~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~ 183 (268)
T 3efz_A 105 VIEDIKRDFEESILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRER 183 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hcC--CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH---HHHhhcccCccchHhHHHHHHHHHhhHhhhccCC
Q 025822 164 ADL--PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE---AISELDTLNEESYKDSTLIMQLLRDNLTLWTSDI 238 (247)
Q Consensus 164 ~~L--~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~---ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~~~ 238 (247)
++| |||||||||||||||||||||+|++++||.+||+|||+ ||+++|+|+|++ |+||||||||||+|+++.
T Consensus 184 ~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIaeld~L~ees----tlImQLLRDNLtlWtsd~ 259 (268)
T 3efz_A 184 SFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENT----EKLLKILRDNVSQWEQGC 259 (268)
T ss_dssp HHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHH----HHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHhccCChHH----HHHHHHHHHHHHHhhccc
Confidence 899 99999999999999999999999999999999999999 999999999987 999999999999999987
Q ss_pred CC
Q 025822 239 PE 240 (247)
Q Consensus 239 ~~ 240 (247)
++
T Consensus 260 ~~ 261 (268)
T 3efz_A 260 SG 261 (268)
T ss_dssp CT
T ss_pred cc
Confidence 65
No 8
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=100.00 E-value=9.6e-82 Score=545.31 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=199.2
Q ss_pred hHHhHH---HHHHHHHHhCChHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCc
Q 025822 6 ERENFV---YVAKLAEQAERYDEMVDAMKNVAK----LDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGN 78 (247)
Q Consensus 6 ~re~l~---~~aklaeq~ery~Dm~~~mk~~i~----~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~ 78 (247)
+|++++ |+|||++||||||||+++||++++ .+++||.||||||||||||+||++|+|||+|++++|++ +|+
T Consensus 2 ~re~~v~~~~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke--k~~ 79 (227)
T 2o8p_A 2 EMDERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ--LNN 79 (227)
T ss_dssp -CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSC
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--cCC
Confidence 488999 999999999999999999999999 89999999999999999999999999999999999998 677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHH
Q 025822 79 EVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETA 158 (247)
Q Consensus 79 ~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A 158 (247)
+.+++.+++||++|++||..+|++|+++||++|+|.+ |++|||+|||||||||+|||..|+ +++|+++|++|
T Consensus 80 ~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a---EskVFY~KMKGDYyRYlAE~~~g~-----~e~a~~aY~~A 151 (227)
T 2o8p_A 80 DELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSF---FSKFFKLKVKSDISRYKLEFGLCS-----LEDSKKIHQDA 151 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSH---HHHHHHHHHHHHHHHHHHHTTSSC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcH---HHHHHHHHHhhhHHHHHHHHcccc-----HHHHHHHHHHH
Confidence 8889999999999999999999999999999999987 999999999999999999999998 89999999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH---HHhhcccCccchHhHHHHHHHHHhhHh
Q 025822 159 TTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA---ISELDTLNEESYKDSTLIMQLLRDNLT 232 (247)
Q Consensus 159 ~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a---i~~ld~l~ee~~~ds~~ilqlLrdNl~ 232 (247)
+++|+++||||||+||||+||||||||||+|+|++||.+|++||+.+ +..-++. +.++++|+|+|+|||||.
T Consensus 152 ~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m--~~~~~~~~~~q~~~d~~~ 226 (227)
T 2o8p_A 152 FTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENM--DRKAQITVYLQGIKDYIE 226 (227)
T ss_dssp HHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC----
T ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccc--hhHHHHHHHHHHHHHhcc
Confidence 99999899999999999999999999999999999999999999976 3333333 348889999999999984
No 9
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.83 E-value=0.13 Score=41.58 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
.+.|...|++|+.+++...++.+|.......+.+..++. .|+.++|+...++++..+-.
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 357999999999998878888899888888888877766 69999999999999876543
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.47 E-value=0.62 Score=35.79 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHH-HH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI-KE 87 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i-~~ 87 (247)
-...++.+..+-|+|++++.+.+++++.+|.- .+=...+..+|-. .+....+...+........ ........+ .-
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-VETLLKLGKTYMD-IGLPNDAIESLKKFVVLDT--TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCc--hhHHHHHHHHHH
Confidence 34568889999999999999999999988764 4445555555543 3444445544443322211 111111000 00
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhc
Q 025822 88 Y--RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEAD 165 (247)
Q Consensus 88 y--k~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~ 165 (247)
+ .... ++-...+..++. +-|. + ..+ +...|..|.-. |+ -+.|.+.|++|+++
T Consensus 83 ~~~~~~~-~~a~~~~~~a~~-----~~~~--~--~~~--~~~lg~~~~~~-----g~-----~~~A~~~~~~~l~~---- 136 (184)
T 3vtx_A 83 NFMIDEK-QAAIDALQRAIA-----LNTV--Y--ADA--YYKLGLVYDSM-----GE-----HDKAIEAYEKTISI---- 136 (184)
T ss_dssp HHHTTCH-HHHHHHHHHHHH-----HCTT--C--HHH--HHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH----
T ss_pred HHHcCCH-HHHHHHHHHHHH-----hCcc--c--hHH--HHHHHHHHHHh-----CC-----chhHHHHHHHHHHh----
Confidence 0 0000 111122222222 1232 1 111 22234444221 11 35788999998865
Q ss_pred CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 166 LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 166 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.|.+| ....|.+..|+. +|+.++|+..-++|++
T Consensus 137 -~p~~~---~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 137 -KPGFI---RAYQSIGLAYEG-KGLRDEAVKYFKKALE 169 (184)
T ss_dssp -CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred -cchhh---hHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 34444 344555555544 7999999987777653
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.24 E-value=1 Score=36.90 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=101.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh-hh--hC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL-------DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EA--KG 77 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~-------~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~-~~--~~ 77 (247)
+-+..++.+....|+|++++.+++++++. +.+....-...+..+|-. .+....|...+....... .. ..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45667888888999999999999998864 222222333334444322 233344444443221110 00 00
Q ss_pred chHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHH
Q 025822 78 NEVNA----KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSM 152 (247)
Q Consensus 78 ~~~~~----~~i~~yk-~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 152 (247)
.+... ....-|. ..=-++-...+...+.+.....-+ +....+..+-..|..|... |+ .+.|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----~~-----~~~A~ 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK---DHPDVAKQLNNLALLCQNQ-----GK-----YEEVE 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHTT-----TC-----HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHc-----CC-----HHHHH
Confidence 11100 0001110 000122334444455544333222 1122233333345444322 11 36799
Q ss_pred HHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 153 KAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 153 ~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
..|++|+.++....++.+|.......+.+..++. .|+.++|+...++++..+-.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 9999999999877788888888888888877766 69999999999999876543
No 12
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.47 E-value=3 Score=34.96 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
++|...|++|++.++ .+|..+|....+..|.+..|++ +|+.++|+...++|++-+..
T Consensus 172 ~~A~~~~~~al~~~~-~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 172 KKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 679999999999986 4666677777788999998887 69999999999999877643
No 13
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.01 E-value=0.99 Score=42.49 Aligned_cols=100 Identities=6% Similarity=0.037 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 025822 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIR 173 (247)
Q Consensus 94 ~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pir 173 (247)
+|-..+|...+.+-...|=|.. + ..+=-+.--|..|+..-. -+.|...|++|+++-+..|+|.||--
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~H--p-~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTN--L-YVLRLLSIASEVLSYLQA----------YEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTS--H-HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--H-HHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3456667777777766655532 1 111111222333322211 25689999999999988999999999
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 174 LGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 174 LgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
+....|.++.|+. .|+.++|..+.++|++--..
T Consensus 393 a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 393 GMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999998877 69999999999998765443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.63 E-value=3.5 Score=33.94 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
.+.|...|++|+++. |.+| ....+.+..++. +|+.++|+...++++
T Consensus 252 ~~~A~~~~~~a~~~~-----~~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al 297 (330)
T 3hym_B 252 YAEALDYHRQALVLI-----PQNA---STYSAIGYIHSL-MGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHHS-----TTCS---HHHHHHHHHHHH-HTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhC-----ccch---HHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 357889999998663 3333 233445555444 799999988766654
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.40 E-value=3.8 Score=33.36 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=98.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHH-
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEE----RNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNA- 82 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eE----RnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~- 82 (247)
..+...+....+.|+|++++.+++++++..|. +++. ...+..+|- ..+....+...+.....-....+.....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 46778899999999999999999999987655 2221 123333332 2334444444443322111111111100
Q ss_pred ----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcc----------cCchhHHH
Q 025822 83 ----KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK----------FGDEKKEA 147 (247)
Q Consensus 83 ----~~i~~yk-~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~----------~~~~~~~~ 147 (247)
....-|. ..=-++-...+...+.+.... .++...+..+...|..|...-... ..++-...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 0000010 001123334444555544432 233333444455666665554411 01222334
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.+.|...|++|+.++.. .+ .+|.......+.+. .|.-.|+.++|+...+++++-+-
T Consensus 159 ~~~A~~~~~~a~~~~~~-~~-~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTA-LG-DRAAQGRAFGNLGN-THYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-HT-CHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 67888889999888764 22 23333334444444 44457999999999888876654
No 16
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.83 E-value=0.27 Score=45.48 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
+.|...|++|+.+-+..++|.||.......|.++-|.. .|+.++|..+.++|++--..
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH-QGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999889999999999999999998877 69999999999988775544
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.83 E-value=3.1 Score=36.77 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
++|.++|++|+++ .|.++..-.+.+++..|++...|+.++|+..-++|+
T Consensus 351 ~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 351 EEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5789999999853 344444555677888888777899999987666554
No 18
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.52 E-value=0.77 Score=42.55 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 025822 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIR 173 (247)
Q Consensus 94 ~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pir 173 (247)
+|-..+|...+.+-.+.|=|...+ .+=-+.--|.-|+.. |. -+.|...|++|+++-+..++|.||--
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~-----g~-----~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYM-----QD-----WEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhh-----cC-----HHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 455567777777776666553211 111111122222211 11 25799999999999998999999999
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 174 LGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 174 LgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
.....|.+.-|+. .|+.++|..+-++|++--..
T Consensus 382 a~~l~nLa~~~~~-qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 382 ASMWLKLGRLYMG-LENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHH
Confidence 9988899888776 69999999999988776554
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.51 E-value=7.3 Score=34.71 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
.+.|...|++|+++ .|.+| ....+.+..++ -.|+.++|+...+++++-.
T Consensus 444 ~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 444 FNAAIKLLTKACEL-----DPRSE---QAKIGLAQLKL-QMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHH-HhccHHHHHHHHHHHHHhC
Confidence 46788888888755 34454 34455555554 4799999999888877654
No 20
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.14 E-value=5 Score=32.20 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 150 ~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.|...|++|+++....-.+.++.......+.+.+ |...|+.++|+...++++.
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY-YTINRDKVKADAAWKNILA 249 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence 4788999999998543222212222334444444 4557999999988777664
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=90.88 E-value=1.1 Score=36.06 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
+.|...|++|+++++..+.+.+|.......+.+..++. .|+.++|+...++|++.+-
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHH
Confidence 57999999999999887788888777777777766654 7999999999999887653
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.87 E-value=5.5 Score=33.51 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
.-+..++.+....|+|++++.+++++++.+|. +.+-...+..+|-. .+....+...+.
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~ 156 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN-ESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 34556777888888888888888888877665 33444445554433 344444544444
No 23
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=90.55 E-value=4.2 Score=32.20 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+.+..++.+..+.|+|++++.++.++++.+|.-+..-...+..+|-. .+....|...+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~ 67 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFDI 67 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHHH
Confidence 56788899999999999999999999988874444444445555543 4555566666544
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.44 E-value=7.9 Score=33.25 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHH--
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNA-- 82 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~---eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~-- 82 (247)
..+..++....+.|+|++++.+++++++..+.-.. .=...+..+|- ..+....+...+....+.....+.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45667888889999999999999999987665221 11223333333 2344455555443322111101111100
Q ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhc-------ccCchhHHHHHHH
Q 025822 83 ---KRIKEY-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEF-------KFGDEKKEAAANS 151 (247)
Q Consensus 83 ---~~i~~y-k~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~-------~~~~~~~~~~~~a 151 (247)
....-| ...=-++-...+..++.+.... .+....+..+...|..|...-.. ...++-....+.|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQL-----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 000000 0000123334445555554332 12223333334455555444330 0012223346788
Q ss_pred HHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 152 MKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 152 ~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
...|++|++++.. + +.+|.......+.+..+ .-.|+.++|+...++|+.-.-
T Consensus 203 ~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 203 VEFYQENLKLMRD-L-GDRGAQGRACGNLGNTY-YLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHH-H-TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHH
Confidence 9999999998864 2 22344444444555444 447999999999888876554
No 25
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.31 E-value=1.1 Score=41.48 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
+.|...|++|+++.+..|.|.||-.+...-|.+.-|.. +|+.++|..+.++|+.--..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~ 372 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSK 372 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Confidence 56788999999999889999999999988888887766 79999999999999776544
No 26
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.89 E-value=8.9 Score=33.04 Aligned_cols=175 Identities=7% Similarity=-0.030 Sum_probs=89.1
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCc-hHHH---
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTV-----EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGN-EVNA--- 82 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~-----eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~--- 82 (247)
+++.+....|+|++++.++++.+..-..... +=...+..+|-. .+..-.|...+.....--+..+. ....
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3788888899999999999999865333222 122334444333 23333343333221111110111 0000
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHH
Q 025822 83 ----KRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETA 158 (247)
Q Consensus 83 ----~~i~~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A 158 (247)
..+-...... ++=...+...+.+.... .+.......+.-.|..|...-. -+.|...|++|
T Consensus 187 ~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~lg~~y~~~g~----------~~~A~~~~~~a 250 (383)
T 3ulq_A 187 HSLFATNFLDLKQY-EDAISHFQKAYSMAEAE-----KQPQLMGRTLYNIGLCKNSQSQ----------YEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHH
Confidence 0000000001 12233444444444332 2222333333335655543321 36799999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 159 TTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 159 ~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
+++++..-. .|.......|.+..++. +|+.++|+...++|+.-+-
T Consensus 251 l~~~~~~~~--~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 251 IAVFEESNI--LPSLPQAYFLITQIHYK-LGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcc--chhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 999875322 14444445555555555 7999999999998877653
No 27
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.55 E-value=1.3 Score=41.62 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
+.|...|++|+++.+..|.|.||-.+...-|.+..|.. .|+.++|..+.++|++--..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Confidence 35677899999999889999999999999998888877 69999999999999876544
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.00 E-value=8.8 Score=33.07 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=48.1
Q ss_pred hhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHH
Q 025822 121 TVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (247)
Q Consensus 121 kvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~ 200 (247)
..-.+-..|..|..+-. .+.|...|++|+++... .+. .+.+.+.+++.--..|.-+|+.++|+...++
T Consensus 142 ~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~-~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 209 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKE-HEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209 (383)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHT-CST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHh-Ccc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33333445666655322 35799999999999864 433 2445555555544555568999999998888
Q ss_pred HHHHHH
Q 025822 201 AFDEAI 206 (247)
Q Consensus 201 afd~ai 206 (247)
|++-+-
T Consensus 210 al~~~~ 215 (383)
T 3ulq_A 210 AYSMAE 215 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876643
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=88.97 E-value=11 Score=33.20 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCC----cchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADL--PPTH----PIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L--~pt~----pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|...|++++..-...+ .|.+ |.......+.+..++. .|+.++|+...++++.
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL-KNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 5678888888887433223 4444 5555555666665555 6999999998888764
No 30
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.77 E-value=14 Score=33.67 Aligned_cols=173 Identities=18% Similarity=0.121 Sum_probs=89.2
Q ss_pred HhHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERY-DEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (247)
Q Consensus 8 e~l~~~aklaeq~ery-~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 86 (247)
+-+..++++....|+| ++++.+++++++.+|.. .+=...|..+|-.. +....|...+....+.... .......-.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~~~~~~lg~ 178 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN--KVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--HHHHHHHHH
Confidence 3456677777777888 88888888888776653 44455555555432 4444454444332211110 010111111
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHH
Q 025822 87 EYRQ----------KVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYE 156 (247)
Q Consensus 87 ~yk~----------ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~ 156 (247)
-|.. .=-++-...++..+.+ -|.. ..++ -..|..|.... +..+. ...-.+.|..+|+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~----~~~~--~~lg~~~~~~~-~~~~~-~~g~~~~A~~~~~ 245 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLD----GRSW--YILGNAYLSLY-FNTGQ-NPKISQQALSAYA 245 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTC----HHHH--HHHHHHHHHHH-HHTTC-CHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCC----HHHH--HHHHHHHHHHH-Hhhcc-ccchHHHHHHHHH
Confidence 1111 0112233344444442 2321 1222 23444443330 11122 1223578999999
Q ss_pred HHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 157 TATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 157 ~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+|+.+ .|.+|-......|.+..|+. +|+.++|+...++|+.
T Consensus 246 ~al~~-----~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 246 QAEKV-----DRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHH-----CGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHh-----CCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 99876 23222555667777777766 6999999988777754
No 31
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=88.12 E-value=5.6 Score=28.42 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
-+.|...|++|++++.. .+ .+|.......+.+..+ .-.|+.++|+...++|++-+
T Consensus 105 ~~~A~~~~~~a~~~~~~-~~-~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 105 YEKAIDYHLKHLAIAQE-LK-DRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cc-chHhHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHH
Confidence 35789999999999864 22 2333333444555544 45799999999888877654
No 32
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=87.15 E-value=1.6 Score=32.25 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|..+|++|+++ .|.+| ....|.+..|+. +|+.++|+...++|+.-
T Consensus 25 ~~A~~~y~~Al~~-----~p~~~---~~~~nlg~~~~~-~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 25 EKAHVHYDKAIEL-----DPSNI---TFYNNKAAVYFE-EKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHhHHHHHHH-hhhHHHHHHHHHHHHHh
Confidence 5799999999865 45554 345677777776 79999999998888764
No 33
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.77 E-value=0.58 Score=43.18 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
+.|...|++|+++.+..|+|.||..+...-|.+.-|.. .|+.++|..+.++++.--..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHH
Confidence 45677788888777778999999999998888877766 69999999999998765443
No 34
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.64 E-value=14 Score=31.26 Aligned_cols=189 Identities=11% Similarity=0.032 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHH---
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNA--- 82 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~---eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~--- 82 (247)
.+..++......|+|++++.+++++++.+|.-.. .=...+..+|-. .+....+...+.....-....+.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4567888888999999999999999987665322 122234444332 334444444443221111101111100
Q ss_pred --HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchh-------ccc---CchhHHHHH
Q 025822 83 --KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAE-------FKF---GDEKKEAAA 149 (247)
Q Consensus 83 --~~i~~yk-~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE-------~~~---~~~~~~~~~ 149 (247)
....-|. ..=-++-...+...+.+.... .++...+..+-..|..|...-. ... .++.....+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL-----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 0000010 000123334445555544432 1212222222334444433322 111 123344567
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 150 ~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.|...|++|+.++.. . +.+|.......|.+..++ -.|+.++|+...++|+.-+-
T Consensus 165 ~A~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 165 AAVDFYEENLSLVTA-L-GDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Confidence 889999999998864 3 234444444555555554 47999999998888876543
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.93 E-value=16 Score=31.54 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|...|++|+.+ .|.+| ....+.+..+ ...|+.++|+...++++.
T Consensus 311 ~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~-~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 311 PVEAIRVCSEVLQM-----EPDNV---NALKDRAEAY-LIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----CcccH---HHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 35678888888755 34444 3344444444 457999999988887754
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.89 E-value=15 Score=31.00 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+.++.++....+.|+|++++.++++++..+|.- .+=...+..+|-. .+....|...+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAE-NENEQAAIVALQR 124 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 357888999999999999999999999887653 4445555555543 3555556665544
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=85.43 E-value=11 Score=29.26 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..++.+..+.|+|++++.++++++..++.. ..-...+..+|-. .+....+...+..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNVYVV-KEMYKEAKDMFEK 116 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 345567788888888888888888888766543 3333344444432 3444455555543
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=85.35 E-value=17 Score=31.11 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH----
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELT-----VEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV---- 80 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt-----~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~---- 80 (247)
+..++.+....|+|++++.++++.++...... ..=...+..+|- ..+....+...+.....-....++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 55778888889999999999998876421111 111223333332 23344444444433221111011110
Q ss_pred -HHHHHHHHH--HH----------------HHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccC
Q 025822 81 -NAKRIKEYR--QK----------------VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG 141 (247)
Q Consensus 81 -~~~~i~~yk--~k----------------i~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~ 141 (247)
......-|. .. .-++-...+...+.+.... .+.......+-..|..|...-.
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~---- 238 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL-----GDRGAQGRACGNLGNTYYLLGD---- 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCC----
Confidence 001111111 11 0133344555555555432 1222333334445555543321
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 142 DEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 142 ~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.+.|...|++|+.++.. .+ ++...+.+++.-...|--.|+.++|+...++|++.+-
T Consensus 239 ------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 239 ------FQAAIEHHQERLRIARE-FG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHH-HT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHh-cC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34688888888888764 21 3333333443334444557888888888887776554
No 39
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=85.21 E-value=3.5 Score=35.75 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred chhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHH
Q 025822 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLA 198 (247)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ia 198 (247)
....+|+-.+|.++...-. -+.|...|++|+.++.. ++ .+|..-....|.+.+|+. +|+.++|+...
T Consensus 98 ~l~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~~-~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~ 164 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKE----------YVEAIGYYREAEKELPF-VS-DDIEKAEFHFKVAEAYYH-MKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-CC-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHhh-CC-ChHHHHHHHHHHHHHHHH-cCCcHHHHHHH
Confidence 3445566677877644322 35789999999998853 33 234444455555665555 79999999999
Q ss_pred HHHHHHHH
Q 025822 199 KQAFDEAI 206 (247)
Q Consensus 199 k~afd~ai 206 (247)
++|++-.-
T Consensus 165 ~~al~~~~ 172 (378)
T 3q15_A 165 LQALDIYQ 172 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877554
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=85.14 E-value=15 Score=30.26 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|...|++|+++ .|.+| ....+.+..++ ..|+.++|+...++|++
T Consensus 288 ~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 288 PVEAIRICSEVLQM-----EPDNV---NALKDRAEAYL-IEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----CcccH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 35688888888765 34443 34555555554 47999999887776653
No 41
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=84.93 E-value=19 Score=31.49 Aligned_cols=171 Identities=9% Similarity=-0.050 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH-HHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV-NAKRIKE 87 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~~~i~~ 87 (247)
-+..++.+....|+|++++.+++++++.+|.-. +-...+..+|- ..+....+...+........ .+.. ......-
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~ 381 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-FPYIQLACLAY-RENKFDDCETLFSEAKRKFP--EAPEVPNFFAEI 381 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-HHHHHHHHHTT-TTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcc--cCHHHHHHHHHH
Confidence 455677888888888888888888887766633 23333333332 23445555555544332211 1111 1111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcC
Q 025822 88 YR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (247)
Q Consensus 88 yk-~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L 166 (247)
|. ..--++-......++.+- |........+..+-..|..|.... ..| -.+.|...|++|+.+
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~--~~~-----~~~~A~~~~~~a~~~----- 444 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELE-----NKLDGIYVGIAPLVGKATLLTRNP--TVE-----NFIEATNLLEKASKL----- 444 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-----HTSSSCSSCSHHHHHHHHHHHTSC--CTT-----HHHHHHHHHHHHHHH-----
T ss_pred HHHCCCHHHHHHHHHHHHHhh-----hccchHHHHHHHHHHHHHHHhhhh--hcC-----CHHHHHHHHHHHHHh-----
Confidence 10 000122223333333322 221111111112222333332100 012 245788889888865
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 167 ~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
.|.+| ....+.+..+. -.|+.++|+...+++++-
T Consensus 445 ~~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 445 DPRSE---QAKIGLAQMKL-QQEDIDEAITLFEESADL 478 (514)
T ss_dssp CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred CcccH---HHHHHHHHHHH-HhcCHHHHHHHHHHHHHh
Confidence 34444 33344444444 479999999888777653
No 42
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=84.53 E-value=16 Score=30.27 Aligned_cols=189 Identities=14% Similarity=0.057 Sum_probs=92.1
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----hhhhhhhhHHHHHHHH-HhhhhhhhCchH-
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY-----KNVIGARRASWRILSS-IEQKEEAKGNEV- 80 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ay-----Kn~i~~~R~s~R~l~~-~e~~~~~~~~~~- 80 (247)
+.+...+...-..|+|++++.++++.++..+. ..+....+..-| -...+..-.|...+.. ++.... ..+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC-SSCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CCchHH
Confidence 34556677777889999999999998876655 333322221111 1112233445554432 211111 01111
Q ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHH
Q 025822 81 NA----KRIKEYRQ-KVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAY 155 (247)
Q Consensus 81 ~~----~~i~~yk~-ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y 155 (247)
.. ..-.-|.. .=-++-....+..+.+.+. .|. ++...+..+-..|..|...-+ -+.|...|
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~--~~~~~~~~~~nlg~~y~~~~~----------y~~Al~~~ 219 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHD--NEEFDVKVRYNHAKALYLDSR----------YEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCC--CHHHHHHHHHHHHHHHHHTTC----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCc--cccchHHHHHhHHHHHHHHhh----------HHHHHHHH
Confidence 00 11111111 1112334555566655543 232 111111122234555432211 35799999
Q ss_pred HHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchH
Q 025822 156 ETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYK 218 (247)
Q Consensus 156 ~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ 218 (247)
++|++++.. ..++..++.+++.--..|.-+|+.++|+. ..|+.|+.-.+.++...++
T Consensus 220 ~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~---~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 220 NKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIE---DAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHHhCcHhhH
Confidence 999999853 23444566555555555666899999942 2344444444445555553
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=84.11 E-value=6.1 Score=31.67 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+.++.+|....+.|+|++++.+++++++.+|.-. +-...+..+|-. .+....|...+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYE-LAKYDLAQKDIET 62 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-TTHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 4678899999999999999999999998776532 223344443332 3444445555543
No 44
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=84.07 E-value=20 Score=30.97 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH-HHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV-NAKRIKEY 88 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~~~i~~y 88 (247)
...+|.+..+.|+|++++.++.++++..|. +..-...+..+|-. .+....+...+........ .+.. ......-|
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKAASKLKN--DNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 344577788899999999999999987664 34445555555543 3444555555544332221 1111 11111111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhh--------cccccccchhcccCchhHHHHHHHHHHHHHHH
Q 025822 89 RQK-VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKM--------KGDYYRYLAEFKFGDEKKEAAANSMKAYETAT 159 (247)
Q Consensus 89 k~k-i~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~Km--------kgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~ 159 (247)
... =-++-......++. +-|. +......+..+ .|+.|. ..| -.+.|...|++|+
T Consensus 222 ~~~g~~~~A~~~~~~~~~-----~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g-----~~~~A~~~~~~~l 284 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLK-----LDQD--HKRCFAHYKQVKKLNKLIESAEELI-----RDG-----RYTDATSKYESVM 284 (450)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCTT--CHHHHHHHHHHHHHHHHHHHHHHHH-----HHT-----CHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----hCCC--hHHHHHHHHHHHHHHHHHHHHHHHH-----HcC-----CHHHHHHHHHHHH
Confidence 110 00111222222221 1232 11111111000 122221 111 1457888888887
Q ss_pred HHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 160 TAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 160 ~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
++ .|.+|....-++..-...|.-.|+.++|+...++++.
T Consensus 285 ~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 285 KT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 4567655443444334445557999999999888764
No 45
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.26 E-value=22 Score=30.72 Aligned_cols=184 Identities=11% Similarity=0.037 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEE-----RNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eE-----RnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 84 (247)
+..++++....|+|++++++++++....+.++... ++++...+. ..+..-.+..............++......
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 67889999999999999999999887666665432 222222221 112222222222211111110111100011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHH
Q 025822 85 IKEYRQKVESELSDICNDIMTVIDEHL--IPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAA 162 (247)
Q Consensus 85 i~~yk~ki~~EL~~~c~eii~lid~~L--lp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a 162 (247)
+....-++-.+.- -..+.+.++...+ .+...+....+-++-..|..|.-+ ++ -++|...|++|..++
T Consensus 137 ~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 137 LSIKLATLHYQKK-QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL-----RN-----LAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh-----Cc-----HHHHHHHHHHHHHHh
Confidence 1111111111110 1122222322221 112222233443444445444322 11 357899999999998
Q ss_pred hhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 163 EADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 163 ~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
.. .+. .|.-.|...+...-+|...++..+|+..-.++|+..-.
T Consensus 206 ~~-~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 206 NS-IYC-PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp HH-SCC-CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hc-CCC-chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 53 442 33444666666666777789999999988888876543
No 46
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.15 E-value=21 Score=30.61 Aligned_cols=54 Identities=7% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
-+.|...|++|+++++.. .+|.......|.+..++. +|+.++|+...++|+.-+
T Consensus 238 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 367999999999998754 344444445555555554 799999999888776643
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=83.08 E-value=15 Score=28.89 Aligned_cols=165 Identities=9% Similarity=0.027 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH-HHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV-NAKRIK 86 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~~~i~ 86 (247)
+-+..+|.+..+.|+|++++.++++++..+|.. .+-...+..+|-. .+..-.+...+....+... .+.. ......
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQT-EMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 345678888888999999999999999876553 3444445555433 3445555555544322211 1111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcC
Q 025822 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (247)
Q Consensus 87 ~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L 166 (247)
-|.. ..--.+.+..++..+- ....+.. ...+...|..|... |+ .+.|...|++|+...
T Consensus 114 ~~~~------~g~~~~A~~~~~~~~~-~~~~~~~-~~~~~~la~~~~~~-----g~-----~~~A~~~~~~~~~~~---- 171 (252)
T 2ho1_A 114 FLYE------QKRYEEAYQRLLEASQ-DTLYPER-SRVFENLGLVSLQM-----KK-----PAQAKEYFEKSLRLN---- 171 (252)
T ss_dssp HHHH------TTCHHHHHHHHHHHTT-CTTCTTH-HHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHHC----
T ss_pred HHHH------HhHHHHHHHHHHHHHh-CccCccc-HHHHHHHHHHHHHc-----CC-----HHHHHHHHHHHHhcC----
Confidence 1111 1112344444444432 1111211 22222344444222 11 346777777776542
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 167 ~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
|.+| ....+.+..++. .|+.++|+...++++.
T Consensus 172 -~~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 172 -RNQP---SVALEMADLLYK-EREYVPARQYYDLFAQ 203 (252)
T ss_dssp -SCCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred -cccH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 3332 233444444443 6888888877776643
No 48
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=82.93 E-value=27 Score=31.55 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|...|++++++. |.+| ....+.+.. |...|+.++|....+++++
T Consensus 532 ~~~A~~~~~~~~~~~-----p~~~---~~~~~l~~~-~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-----TNDA---NVHTAIALV-YLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHHS-----SCCH---HHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCCh---HHHHHHHHH-HHHhCCHHHHHHHHHHHHh
Confidence 457888888887652 4455 233333333 4557999999988777665
No 49
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=82.20 E-value=18 Score=29.11 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=46.3
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 025822 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (247)
Q Consensus 6 ~re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt--~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (247)
+-+.+..+|...-+.|+|++++..+++++...|.-. .+=...+..+|-. .+....|...+..+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQ 80 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 346778899999999999999999999998766543 4444555555533 4566667777665443
No 50
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=81.91 E-value=29 Score=31.29 Aligned_cols=55 Identities=7% Similarity=0.008 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
.+.|.+.|++|+++... . +.+|-....+++.-...|...|+.++|+...+++++.
T Consensus 491 ~~~A~~~~~~~~~~~~~-~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKK-T-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-c-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46789999999988653 2 3466553334444444455589999999998888754
No 51
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=81.61 E-value=22 Score=29.66 Aligned_cols=58 Identities=10% Similarity=-0.052 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
+.+..++.+..+.|+|++++.+++++++.+|.. .+=...+..+|-. .+....+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~ 122 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAE-NEQELLAISALR 122 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 457889999999999999999999999877653 4444555555443 244444544443
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.10 E-value=19 Score=28.56 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
+-+..++.+..+.|+|++++..+.+++..+|.. .+=...+..+|-. .+....+...+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~ 63 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD-PEALYWLARTQLK-LGLVNPALENGK 63 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345667777778888888888888888776654 3444444444432 344444444443
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=80.69 E-value=24 Score=29.61 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHH--
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT-----VEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVN-- 81 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt-----~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~-- 81 (247)
-+..++.+....|+|++++.++++.+....... ..=...+..+|. ..+....+...+..........+....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 345788888889999999999998875422211 111222333332 234445555554432221111111110
Q ss_pred -----HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchh
Q 025822 82 -----AKRIKEYRQK-------------------VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAE 137 (247)
Q Consensus 82 -----~~~i~~yk~k-------------------i~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE 137 (247)
...+-..... .-++-...+...+.+.... .+.......+...|..|...-.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-----GDRAAQGRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHccC
Confidence 1111111111 0133344555555555432 1222223333334555543321
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh-hhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 138 FKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 138 ~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.+.|...|++|+.++.. .+ +|...+ ...|.+.. |...|+.++|+...++|++-+-
T Consensus 203 ----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 203 ----------FRDAVIAHEQRLLIAKE-FG--DKAAERRAYSNLGNA-YIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHH-TT--CHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHh-cC--CcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHH
Confidence 35688889999988764 22 223333 33444444 4457999999888888775543
No 54
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=80.49 E-value=25 Score=29.56 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..++.+..+.|+|++++.+++++++.+|.. .+-...+..+|.. .+....|...+..
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNN-LKALMALAVSYTN-TSHQQDACEALKN 158 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHc-cccHHHHHHHHHH
Confidence 346678899999999999999999999887654 3444555555543 3444555555543
No 55
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.25 E-value=2 Score=32.39 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhcC---CCC-------CcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADL---PPT-------HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L---~pt-------~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+..... .|. +|....+.+|.+..|+. +|+.++|+..+.+|+.
T Consensus 28 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHh
Confidence 578999999998864321 233 66777888888888776 6999999998888754
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=80.13 E-value=22 Score=28.65 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
+.|...|++|++++.. . .+|...+.+++.-...|...|+.++|+...+++++-+-
T Consensus 200 ~~A~~~~~~a~~~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKE-F--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHHHHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5788899999988864 2 23444444444444455567999999998888876543
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=79.82 E-value=48 Score=32.42 Aligned_cols=167 Identities=12% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhhhhhhhCchH-HHHH
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGNEV-NAKR 84 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~-~e~~~~~~~~~~-~~~~ 84 (247)
-+-+..++.+..+.|+|++++.+.++.++.+|+.. +=.+-|..+|.. .+..-.|...+.. ++-... ... ....
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~-~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~---~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQ-QGKLQEALMHYKEAIRISPT---FADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 35567899999999999999999999999988753 344555555543 2334444444432 211111 111 1110
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHH
Q 025822 85 IKEYR--QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAA 162 (247)
Q Consensus 85 i~~yk--~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a 162 (247)
-.-|. .+. ++=...++..+++ -|.. ..+++ ..|..|+-+ |+ .+.|..+|++|+++
T Consensus 84 g~~l~~~g~~-~~A~~~~~kAl~l-----~P~~----~~a~~--~Lg~~~~~~-----g~-----~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 84 GNTLKEMQDV-QGALQCYTRAIQI-----NPAF----ADAHS--NLASIHKDS-----GN-----IPEAIASYRTALKL- 140 (723)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHH-----CTTC----HHHHH--HHHHHHHHT-----TC-----HHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHh-----CCCC----HHHHH--HHHHHHHHc-----CC-----HHHHHHHHHHHHHh-
Confidence 00010 011 1111222222221 2321 11221 223333221 11 45789999999865
Q ss_pred hhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025822 163 EADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (247)
Q Consensus 163 ~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~l 209 (247)
.|.+|- ...|.+. .|..+|+.++|++..+++.+-.-..+
T Consensus 141 ----~P~~~~---a~~~L~~-~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 141 ----KPDFPD---AYCNLAH-CLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp ----CSCCHH---HHHHHHH-HHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred ----CCCChH---HHhhhhh-HHHhcccHHHHHHHHHHHHHhChhHH
Confidence 345542 3344444 34557999999988888877655443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=79.34 E-value=19 Score=27.42 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=84.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH-HHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV-NAKRIK 86 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~~~i~ 86 (247)
.-+..++.+....|+|++++.+++++++..|.. .+-...+..+|-. .+....+...+....+... .+.. ......
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 84 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQY-LKVNDKAQESFRQALSIKP--DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCC--CChHHHHHHHH
Confidence 345677888899999999999999999877654 3444445555432 3445555555544322211 1111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcC
Q 025822 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (247)
Q Consensus 87 ~yk~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L 166 (247)
-|... ..--.+.+..++..+- ....+. ....+...|..|... |+ .+.|...|+++++.
T Consensus 85 ~~~~~-----~~~~~~A~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~~~-----~~-----~~~A~~~~~~~~~~----- 142 (225)
T 2vq2_A 85 FLCGR-----LNRPAESMAYFDKALA-DPTYPT-PYIANLNKGICSAKQ-----GQ-----FGLAEAYLKRSLAA----- 142 (225)
T ss_dssp HHHTT-----TCCHHHHHHHHHHHHT-STTCSC-HHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH-----
T ss_pred HHHHh-----cCcHHHHHHHHHHHHc-CcCCcc-hHHHHHHHHHHHHHc-----CC-----HHHHHHHHHHHHHh-----
Confidence 11110 0011223333333322 111121 122223345544322 21 35678888888754
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 167 ~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
.|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 143 ~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 143 QPQFP---PAFKELARTKML-AGQLGDADYYFKKYQSR 176 (225)
T ss_dssp STTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred CCCCc---hHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 23343 233444444444 79999999888877653
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=79.13 E-value=5.2 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|.++|++|+++ .|.+| .+..|.+..++. +|+.++|+...++|+.
T Consensus 30 ~~A~~~~~~al~~-----~p~~~---~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 30 PTAMRHYNEAVKR-----DPENA---ILYSNRAACLTK-LMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHhhHHHh-hccHHHHHHHHHHHHH
Confidence 5788899998854 34444 445666666665 6999999987777654
No 60
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=78.56 E-value=8.4 Score=32.09 Aligned_cols=90 Identities=10% Similarity=-0.004 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCCCCCchh--hHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh-hhh
Q 025822 102 DIMTVIDEHLIPSASAGEST--VFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLG-LAL 178 (247)
Q Consensus 102 eii~lid~~Llp~~~~~esk--vfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLg-L~L 178 (247)
+++.+++..+-.....++.+ +.|+...|.+|.. .++ .+.|...|++|+++.. +..++.... +..
T Consensus 93 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~-----~~~Ai~~~~~al~~~~---~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 93 EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVD-----YEYCILELKKLLNQQL---TGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-----SSC-----HHHHHHHHHHHHHTCC---CCSCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-----ccC-----HHHHHHHHHHHHHHhc---ccccHHHHHHHHH
Confidence 45555554443322333323 4455555666522 111 3568999999998542 223333333 344
Q ss_pred hhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 179 NFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 179 N~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
|.+++|++ +|+.++|+..-++|++.+
T Consensus 160 ~lg~~y~~-~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 160 AIANIYAE-NGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 55555555 799999999999988644
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=78.48 E-value=23 Score=28.02 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
-+..++.+....|+|++++.+++++++.+|. +.+=...+..+|-. .+....+...+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQ-AGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 3445666666667777777777776665554 23334444444432 233344444443
No 62
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=78.17 E-value=26 Score=28.44 Aligned_cols=56 Identities=14% Similarity=-0.072 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-cchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTH-PIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~-pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
.+.|...|++|+.+....-.+.+ |-......+.+..++ ..|+.++|+...++++..
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Confidence 35789999999998754333322 333344556666554 479999999988887653
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=78.11 E-value=27 Score=28.59 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchH-HHHHHHHHH
Q 025822 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV-NAKRIKEYR 89 (247)
Q Consensus 11 ~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~~~i~~yk 89 (247)
..+|.+....|+|++++..++++++.+|. +.+-...+..+|-. .+....+...+........ .+.. ......-|.
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKAASKLKS--DNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCS--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 44588899999999999999999987664 34445555555543 3555666666654332221 1111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhh--------cccccccchhcccCchhHHHHHHHHHHHHHHHHH
Q 025822 90 QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKM--------KGDYYRYLAEFKFGDEKKEAAANSMKAYETATTA 161 (247)
Q Consensus 90 ~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~Km--------kgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~ 161 (247)
. . .--.+.+..+...+--...++....+|.++ .|..+. ..| -.+.|...|+++++.
T Consensus 200 ~-----~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~-----~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 200 Q-----L-GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-----RDG-----RYTDATSKYESVMKT 263 (359)
T ss_dssp H-----H-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-----HTT-----CHHHHHHHHHHHHHH
T ss_pred H-----c-CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH-----HcC-----CHHHHHHHHHHHHhc
Confidence 0 0 011122222222221111222222233221 122221 111 135688888888754
Q ss_pred HhhcCCCCCcchh-hhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 162 AEADLPPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 162 a~~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
. |.+|... .+..+.+..++. .|+.++|+...++++..
T Consensus 264 ~-----~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 264 E-----PSVAEYTVRSKERICHCFSK-DEKPVEAIRICSEVLQM 301 (359)
T ss_dssp C-----CSSHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred C-----CCchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh
Confidence 3 4455433 334455555554 79999999998888663
No 64
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=77.60 E-value=5.9 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
+.|...|++|++++.. . .+|..++.+++.-...|-..|+.++|+...++|++-+-
T Consensus 26 ~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKE-F--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-h--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5788899999988864 1 24444554544444444557999999998888877653
No 65
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=76.83 E-value=11 Score=25.84 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+... .++.+|.......+.+..++. .|+.++|+...++++.
T Consensus 55 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 55 NKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFK-EEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 5788999999988753 445555445566677766665 7999999887766665
No 66
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=76.68 E-value=28 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.039 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ay 52 (247)
+.++.+|....+.|+|++++.++++++..+|. +.+-...+..+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 65 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQ 65 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34556666666666777776666666665544 233333344333
No 67
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=76.66 E-value=4.6 Score=33.74 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
+.|...|++|+++++. .|........+..|.+..|+. +|+.++|+...++|++-+
T Consensus 172 ~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 5799999999999863 443222223566777776665 799999999999998765
No 68
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=76.46 E-value=24 Score=29.54 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
-+.|...|++|+.+... .+. +| ..+.++.-....|-.+|+.++|+...++++
T Consensus 171 ~~~A~~~~~~al~~~~~-~~~-~~-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKE-MEN-YP-TCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-TTC-HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-cCC-hh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 35789999999999864 222 22 333233333444555799999988766654
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=75.87 E-value=25 Score=27.15 Aligned_cols=59 Identities=5% Similarity=-0.071 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~ 69 (247)
.+..+|...-+.|+|++++.++++++..+|.- .+-...+..+|- ..+....+...+...
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~ 83 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLS-SVNELERALAFYDKA 83 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTC-HHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 45667888888999999999999999866553 444444454443 245555666665543
No 70
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=74.57 E-value=45 Score=29.40 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhh--cCCCCCcc---hhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 150 NSMKAYETATTAAEA--DLPPTHPI---RLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 150 ~a~~~Y~~A~~~a~~--~L~pt~pi---rLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+...|.+|....+. .+.|.+|- .++.++..--..|...|+.++|+...++++.
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344556666555432 45566653 2455555555566678999999998888765
No 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=74.38 E-value=28 Score=27.00 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
+.+..++...-..|+|++++.++.++++.+ -+..=...+..+|-. .+....|...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 62 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYE-KGEYETAISTLN 62 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence 556778888888999999999999988776 334444455554433 233344444443
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=74.00 E-value=6.2 Score=34.71 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEAD-LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~-L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|.++|++|+++.+.. ....||-.+...-|.+.-|+. +|+.++|+..-+++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~-~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH-MGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 57999999999998643 344677777667788877766 799999987666554
No 73
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=73.25 E-value=7.7 Score=28.29 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|.+.|++|+++.. ..++.++.+-....|.+..+ .-+|+.++|++.-++|+
T Consensus 59 ~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~-~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 59 AECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAF-QKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-ccchhhHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 578999999999975 34544544333444555554 55799999998655554
No 74
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=72.57 E-value=11 Score=25.60 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|...|++|+.+ .|.+| ....|.+..++. +|+.++|+...++|+
T Consensus 21 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~-~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 21 REAVHCYDQLITA-----QPQNP---VGYSNKAMALIK-LGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 5788899999865 34454 344566666655 799999988766655
No 75
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=71.76 E-value=29 Score=25.91 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+ .|.+| ....+.+..++. .|+.++|+...++++.
T Consensus 98 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL-----DSNEI---TALMLLASDAFM-QANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHH-cccHHHHHHHHHHHHh
Confidence 4678888888765 34443 445566666655 6999998887666654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=71.65 E-value=37 Score=27.17 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh-hh--hCc
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD-------VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EA--KGN 78 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~-------~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~-~~--~~~ 78 (247)
-+..++.+....|+|++++.++++++... .+....-...+..+|- ..+....|...+....... .. ...
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35578888888999999999999988642 1122222333333332 2344455555554322211 00 001
Q ss_pred hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHH
Q 025822 79 EVNA----KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (247)
Q Consensus 79 ~~~~----~~i~~yk-~ki~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 153 (247)
+... ....-|. ..=-++-.......+.+.....-+ +....+..+-..|..|... |+ .+.|..
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g~-----~~~A~~ 216 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP---DDPNVAKTKNNLASCYLKQ-----GK-----FKQAET 216 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT---TCHHHHHHHHHHHHHHHHH-----TC-----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHc-----CC-----HHHHHH
Confidence 1111 0000000 000123334444555554433222 1122223333345444322 11 356888
Q ss_pred HHHHHHHHHhh-----------------------------------------cCCCCCcchhhhhhhhHHHHHHHhCChH
Q 025822 154 AYETATTAAEA-----------------------------------------DLPPTHPIRLGLALNFSVFYYEIMNSPE 192 (247)
Q Consensus 154 ~Y~~A~~~a~~-----------------------------------------~L~pt~pirLgL~LN~SVF~yEi~~~~~ 192 (247)
.|++|++++.. .....+|.......+.+..|.. .|+.+
T Consensus 217 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~ 295 (311)
T 3nf1_A 217 LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-QGKFE 295 (311)
T ss_dssp HHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-CCCHH
Confidence 88888877532 1112456555556666665555 69999
Q ss_pred HHHHHHHHHHHH
Q 025822 193 RACHLAKQAFDE 204 (247)
Q Consensus 193 ~A~~iak~afd~ 204 (247)
+|+...++|++-
T Consensus 296 ~A~~~~~~al~l 307 (311)
T 3nf1_A 296 AAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 77
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=71.23 E-value=32 Score=26.30 Aligned_cols=86 Identities=21% Similarity=0.090 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHH
Q 025822 21 ERYDEMVDAMKNVA---KLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVE 93 (247)
Q Consensus 21 ery~Dm~~~mk~~i---~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~ 93 (247)
.|.+..++.+|.-+ -++++||.|-|.=|.--.|...-.-|-|+|-+..-.. +.+..+. +-++-....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~Kdke-----ISEDe~kr~e 85 (121)
T 3lf9_A 11 ERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKE-----VNWFDISQAL 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTT-----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCC-----CCHHHHHhHH
Confidence 56777788887655 4589999999999999888888888888887743110 1000010 1133344455
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 025822 94 SELSDICNDIMTVIDEHL 111 (247)
Q Consensus 94 ~EL~~~c~eii~lid~~L 111 (247)
++|..+.+..+.-||..|
T Consensus 86 ~eIQKLTDkyIkkID~ll 103 (121)
T 3lf9_A 86 WEIQKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666665555543
No 78
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=70.88 E-value=14 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+ .|.+| ....+.+..++. .|+.++|+...++++.
T Consensus 26 ~~A~~~~~~a~~~-----~~~~~---~~~~~l~~~~~~-~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 26 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 5688899998865 23443 344566665555 7999999988777765
No 79
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=70.50 E-value=13 Score=26.27 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+++ .|.+ ..+..|.+..++. +|+.++|+...++++..
T Consensus 44 ~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 44 RKAEAVLANGVKQ-----FPNH---QALRVFYAMVLYN-LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCc---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 5788899988855 3444 3456667776666 69999999988887754
No 80
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=70.00 E-value=36 Score=26.35 Aligned_cols=32 Identities=3% Similarity=0.088 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.-+..++.+....|+|++++.++++++...+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 34567888999999999999999999987665
No 81
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=69.74 E-value=12 Score=28.37 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
+.|...|++|+.+++ ..+. +|...+.+++.-...|--.|+.++|+...++|+.-+
T Consensus 83 ~~A~~~~~~al~~~~-~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 83 DAARRCFLEERELLA-SLPE-DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHH-HSCC-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCc-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578999999999986 3442 454455544444444555899999999999888654
No 82
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=69.56 E-value=39 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayK 53 (247)
+-+..++.+..+.|+|++++..+++++..+|.. .+=...+..+|.
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~ 84 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 445678899999999999999999999988774 333444444443
No 83
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=69.42 E-value=26 Score=24.52 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++.-.
T Consensus 55 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 55 PEAIADCNKAIEK-----DPNFV---RAYIRKATAQIA-VKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHH-HhCHHHHHHHHHHHHHhC
Confidence 4577777777754 23343 334445554444 688888888777776554
No 84
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=68.06 E-value=17 Score=24.15 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+. |.+ .....+.+..++. .|+.++|+...++++.
T Consensus 23 ~~A~~~~~~a~~~~-----~~~---~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 23 TESIDLFEKAIQLD-----PEE---SKYWLMKGKALYN-LERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 56888898888652 333 3345666766665 6999999887777654
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=67.97 E-value=13 Score=31.53 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.++...-.+.+|.......|.+..+++ .|+.++|.....++++-
T Consensus 110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence 46888999999988754444456555555667766666 59999998888877654
No 86
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=66.92 E-value=28 Score=23.86 Aligned_cols=58 Identities=7% Similarity=0.017 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 67 (247)
.-...++.+..+.|+|++++.+++++++.+|.... =...+..+|.. .+..-.|...+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~-~g~~~~A~~~~~ 65 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYER-LDRTDDAIDTYA 65 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45678899999999999999999999998887544 44555666543 344444444443
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=66.73 E-value=21 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++++.. .|.+|......++.+..++. +|+.++|+..-++++.
T Consensus 56 ~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 56 QLAEAQFRDLVSR-----YPTHDKAAGGLLKLGLSQYG-EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 5688888888754 46676655556666666665 7999999887766654
No 88
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=66.60 E-value=20 Score=26.67 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+ .|.+ .....|.+..|+. +|+.++|+...++++.
T Consensus 62 ~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 62 EKAAEDAELATVV-----DPKY---SKAWSRLGLARFD-MADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 4566666666544 2333 2334455554444 5777777766655554
No 89
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=66.33 E-value=20 Score=23.94 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|++. .|.+|.. ...+.+..++. +|+.++|+...++++.
T Consensus 17 ~~A~~~~~~al~~-----~p~~~~~--~~~~lg~~~~~-~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 17 ENALQALEEFLQT-----EPVGKDE--AYYLMGNAYRK-LGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHH-----CSSTHHH--HHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcHHH--HHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 4678888888754 3444420 45666666665 6999999887776654
No 90
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=64.29 E-value=22 Score=28.21 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhh-----hhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLG-----LALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLg-----L~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
-+.|..+|++|+++.-. .|+..++.+. ...|-+.-+.. +|+.++|+.-+.+|+.
T Consensus 27 ~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 35799999999998743 3333343333 55666665555 7999999988777765
No 91
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.08 E-value=13 Score=26.33 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+. +.|.+|....+..+.+..++. .|+.++|+...++++.
T Consensus 45 ~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 45 GGALAAYTQALG-----LDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHh
Confidence 345666666652 344444445555555555544 5777777776666654
No 92
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=63.69 E-value=33 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..++.+....|+|++++.++++++..+|.. .+=...+..+|.. .+....+...+..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~ 78 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQG-QGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345678899999999999999999999887764 3445556666654 3555555555544
No 93
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=63.11 E-value=48 Score=25.30 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.+..++......|+|++++.++++++...+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 4567788888899999999999999976543
No 94
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=62.85 E-value=34 Score=23.40 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLr 228 (247)
+.|...|++|+++ .|.+|. ...+.+..|+ -+|+.++|+...++|+.-+-.. ....-...+.++|+
T Consensus 24 ~~A~~~~~~al~~-----~p~~~~---a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~------~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 24 SRALALFEELVET-----DPDYVG---TYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREE------GTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHHHH-----STTCTH---HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcC------CchhHHHHHHHHHH
Confidence 5788899988865 344442 4455555554 4799999999888887665432 12333455566666
Q ss_pred hhHhhhc
Q 025822 229 DNLTLWT 235 (247)
Q Consensus 229 dNl~~W~ 235 (247)
..=..|.
T Consensus 89 ~~~~~~~ 95 (100)
T 3ma5_A 89 KAEGLEH 95 (100)
T ss_dssp HHHTTC-
T ss_pred Hcccccc
Confidence 5555554
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=62.83 E-value=22 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.+ .|.+| .+..|.+..++. +|+.++|+...++|+.-
T Consensus 21 ~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 21 PNAVKAYTEMIKR-----APEDA---RGYSNRAAALAK-LMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 5688899988865 34444 455566666655 79999999988887653
No 96
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.72 E-value=8.9 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
-+++++.++.+.|+|++++.+..++.+.+|+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567777777778888888777777776666
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=62.40 E-value=21 Score=25.85 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+++ .|.+| ....|.+..++. +|+.++|+..-++|+.
T Consensus 64 ~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~-~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 64 QRALDDCDTCIRL-----DSKFI---KGYIRKAACLVA-MREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----hhhhh---HHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 5788999999865 44444 344555665554 7999999876666543
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.74 E-value=25 Score=26.18 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|..+|++|+.+ .|.||. ..+|.++.++. +|+.++|+...++|+.-
T Consensus 72 ~~A~~~~~~al~l-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 72 DLAIHSYSYGAVM-----DIXEPR---FPFHAAECLLQ-XGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH-----STTCTH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 5789999999865 455653 34666666655 79999998766665543
No 99
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=61.03 E-value=63 Score=25.96 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.-+..++.+..+.|+|++++.+++++++.+|.
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 34567888899999999999999999987665
No 100
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=60.54 E-value=26 Score=24.08 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++..
T Consensus 67 ~~A~~~~~~a~~~-----~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 67 QLALKDCEECIQL-----EPTFI---KGYTRKAAALEA-MKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCch---HHHHHHHHHHHH-HhhHHHHHHHHHHHHHh
Confidence 5688888888865 23333 344556655544 79999998887776643
No 101
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=59.26 E-value=61 Score=25.21 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e 70 (247)
.-+..+|.+..+.|+|++++.+++++++.+|.- ..-...+..+|-. .+....+.+.+....
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLNNYGGFLYE-QKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 345678889999999999999999999877653 4444455555533 455566666665543
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.85 E-value=76 Score=26.16 Aligned_cols=52 Identities=12% Similarity=-0.017 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchh-hhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|..+|++|+++.... . +|... ....|.+.++.. +|+.++|+...+++.+
T Consensus 134 ~~~A~~~~~~Al~~~~~~-~--~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQD-Q--SVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-C--ChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 367999999999987531 1 23222 234566666666 6999999987766554
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=58.80 E-value=52 Score=24.24 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.+..++.+..+.|+|++++.++.+++..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 43 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA 43 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444555555556666666666555555443
No 104
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=58.80 E-value=21 Score=20.28 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025822 83 KRIKEYRQKVESELSDICNDIMTVID 108 (247)
Q Consensus 83 ~~i~~yk~ki~~EL~~~c~eii~lid 108 (247)
+.++.||.+|.+.|..+.+.|-.++-
T Consensus 4 krlrkfrnkikeklkkigqkiqgllp 29 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45688999999999999998877663
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=58.74 E-value=48 Score=23.90 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
+.|..+|++|+.+ .|.+|. ..+|.+..++. +|+.++|+...++++.-.
T Consensus 69 ~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 69 EQALQSYSYGALM-----DINEPR---FPFHAAECHLQ-LGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHH-----CTTCTH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCcH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHhC
Confidence 5789999999865 456653 34566665555 799999998877776554
No 106
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=58.43 E-value=25 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|.++|++|+++ .|.|| ....+.+..|+. +|+.++|+...+++..
T Consensus 22 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 22 DGAIRAYKKVLKA-----DPNNV---ETLLKLGKTYMD-IGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 5788999998865 34554 333444444444 6888888887777643
No 107
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=58.19 E-value=49 Score=23.83 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+..++.+..+.|+|++++..+++++...|.- ..-...+..+|- ..+....+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~ 67 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYV-KTGAVDRGTELLER 67 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 4567888888999999999999988765543 333333444432 23444455555543
No 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.05 E-value=37 Score=23.34 Aligned_cols=49 Identities=10% Similarity=-0.064 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
+.|...|++|+.+ .|.+| ....+.+..+.. +|+.++|+...++++...-
T Consensus 36 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 36 DAALPHLRAALDF-----DPTYS---VAWKWLGKTLQG-QGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence 5688899998865 34443 234555555554 7999999998888776543
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=56.37 E-value=29 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
-...+|++..+.|+|+.++.+++++++.+|.-
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34678999999999999999999999988764
No 110
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=55.36 E-value=31 Score=22.94 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|...|++|+.+ .|.+| ....+.+..++ -+|+.++|+...++++
T Consensus 55 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~-~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 55 QKAYEDGCKTVDL-----KPDWG---KGYSRKAAALE-FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 5678888888765 34443 34456665554 4799999988766654
No 111
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=55.02 E-value=28 Score=29.12 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-.-|.++|.+..--. +.+..+. +-++-.++.++++..+.+..+.-||..+
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~-----isEDe~k~~e~eiQklTd~~i~~iD~~l 199 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGE-----ITEDDLRGYTEDIQKETDKYIAKVDEIA 199 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888743111 1010010 1133445566677777777776666543
No 112
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=54.74 E-value=50 Score=22.88 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..++.+..+.|+|++++.+++++++.+|.- .+=...+..+|-. .+....|...+..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYN-LGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 445678889999999999999999999988775 4445555666544 4555666666554
No 113
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=54.50 E-value=40 Score=22.29 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 21 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 21 DDALQCYSEAIKL-----DPHNH---VLYSNRSAAYAK-KGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcH---HHHHHHHHHHHh-hccHHHHHHHHHHHHHh
Confidence 5678888888754 34443 344555555554 79999999988887654
No 114
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=54.31 E-value=39 Score=22.80 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 63 ~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 63 AGAVQDCERAICI-----DPAYS---KAYGRMGLALSS-LNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CccCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Confidence 5688888888765 34443 334555555544 79999999887776653
No 115
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=54.25 E-value=39 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+....+++..
T Consensus 29 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 29 EAAVHFYGKAIEL-----NPANA---VYFCNRAAAYSK-LGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHH-hhchHHHHHHHHHHHhc
Confidence 5678888888765 23332 334455555544 79999999998888764
No 116
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=54.21 E-value=98 Score=26.03 Aligned_cols=32 Identities=6% Similarity=0.310 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
-+..++.+..+.|+|++++.++++++..+|+.
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch
Confidence 35566677777777777777777777665554
No 117
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.93 E-value=29 Score=28.82 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|.++|++|+++... +. +|...+.+++-.-..|.-+|+.++|+...++|+.-
T Consensus 54 ~~A~~~~~~al~~~~~-~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKK-AG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHH-TT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5799999999999753 32 55555556655556666789999999988887654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=53.66 E-value=95 Score=25.74 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchh-hhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd~a 205 (247)
.+.|...|++|+++... . .+|... ....|.+.+|.. +|+.++|+...++|+.-.
T Consensus 131 ~~~A~~~~~~Al~~~~~-~--~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFEN-E--ERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-C--CChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 35799999999999864 2 123333 345566666655 799999999888887654
No 119
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=53.45 E-value=59 Score=25.48 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
.+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++..
T Consensus 93 ~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 93 FDAAYEAFDSVLEL-----DPTYN---YAHLNRGIALYY-GGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHHHH-----CTTCT---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----Ccccc---HHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence 35678888888765 33343 333444444444 79999998888887753
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=52.94 E-value=38 Score=24.34 Aligned_cols=47 Identities=4% Similarity=-0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++..
T Consensus 64 ~~A~~~~~~a~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 64 GYALGDATRAIEL-----DKKYI---KGYYRRAASNMA-LGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence 5688888888865 23343 344555555544 79999999888877653
No 121
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.04 E-value=41 Score=23.54 Aligned_cols=46 Identities=7% Similarity=-0.076 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++.
T Consensus 82 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 82 DKAETEASKAIEK-----DGGDV---KALYRRSQALEK-LGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHH-----TSCCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----CccCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 5688888888765 34443 344556665554 7999999887776654
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=51.89 E-value=38 Score=25.06 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
++|.+.|++|+++ .|.|| ....+.+..|+ -+|+.++|+..-++|++
T Consensus 48 ~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~-~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 48 DLAKKYICTYINV-----QERDP---KAHRFLGLLYE-LEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHH-HcCchHHHHHHHHHHHH
Confidence 5788888888755 34554 23344444444 47999998887776654
No 123
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=50.90 E-value=60 Score=26.52 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 37 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 37 ~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
-|+||.|-|.=|....|...-..|.++|.+..--.+.-.+.. +.-++-.++.++++..+.+..+.-||..+
T Consensus 104 iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~----kiseD~~k~~e~~iQkltd~~i~~id~~~ 174 (184)
T 1ge9_A 104 LPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE----GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999888888888887431111110100 01244555666777777777777776543
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=50.19 E-value=51 Score=21.95 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+...++++.
T Consensus 26 ~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 26 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CcCcH---HHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 4566666666543 12222 223344443333 5777777766666544
No 125
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=50.09 E-value=12 Score=33.15 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhc--------CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEAD--------LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~--------L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+.... ....+|....+.+|.+..|+. +|+.++|+..+++|+.
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 56888888888865431 011466777788888887775 6899999888887754
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=48.71 E-value=47 Score=23.78 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++|+.+. |.+ ..+..+.+..++. .|+.++|+...++++..
T Consensus 30 ~~A~~~~~~al~~~-----~~~---~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 30 ENAIKFYSQAIELN-----PSN---AIYYGNRSLAYLR-TECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 56888888888652 333 3445555655554 79999999988887654
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=48.59 E-value=73 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+.+..+|....+.|+|++++.++++++..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 50 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY 50 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc
Confidence 34455666666667777777777776665553
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=48.33 E-value=56 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|...|++++.. .|.+| ....+.+..++. .|+.++|+...+++++.
T Consensus 60 ~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 60 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 4678888888754 23343 334556666655 69999998877776643
No 129
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=48.32 E-value=1.2e+02 Score=25.41 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ay 52 (247)
.-+..++.+..+.+++++...+.+.++..+|.. .+-...+..+|
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~ 77 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHH
Confidence 345677888888999999999999988876653 44455555554
No 130
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=48.31 E-value=45 Score=27.31 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-..|.++|.+..--. +.+..+ .+-++-.++.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1dd5_A 103 PSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEG-----LIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888743111 100001 01234445566666666666666666543
No 131
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=47.41 E-value=1.5e+02 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN 54 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn 54 (247)
...++.+..+.|+|++++.++.++++.+|. +..=.+-+..+|..
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345666666667777777777777766655 23334444444444
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=47.17 E-value=90 Score=23.54 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l 66 (247)
-+.+..++....+.|+|++++.++++++..+|. +.+=...|..+|-. .+....|...+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~-~g~~~~Ai~~~ 93 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQI-KEQFQQAADLY 93 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-HccHHHHHHHH
Confidence 355667777888888888888888888877664 34444455555432 23334444433
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=46.81 E-value=58 Score=21.25 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 11 ~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
..++.+..+.|+|++++.+++++++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 38 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE 38 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 34555555556666666666666555443
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=46.53 E-value=49 Score=25.16 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+. |.+| ....|.+..++. +|+.++|+...++++.
T Consensus 54 ~~A~~~~~~al~~~-----~~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 54 TEAEKAFTRSINRD-----KHLA---VAYFQRGMLYYQ-TEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----ccch---HHHHHHHHHHHH-cccHHHHHHHHHHHHH
Confidence 57888999998652 3343 445666666665 7999999998888876
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=46.32 E-value=60 Score=21.83 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 025822 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVG 51 (247)
Q Consensus 9 ~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~a 51 (247)
-+..++.+..+.|+|++++.+++++++..+ +.+-...+..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 355778888899999999999999988765 35444444443
No 136
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=46.25 E-value=47 Score=27.18 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 110 (247)
|+||.|-|.=|....|...-..|.++|.+..--. +.+..+ .+-++-.++.++++..+.+..+.-||..
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-----~iseD~~k~~e~~iQkltd~~i~~id~~ 174 (185)
T 1ise_A 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDK-----EISEDDDRRSQDDVQKLTDAAIKKIEAA 174 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888743111 100001 0113444556666666666666666654
No 137
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=45.82 E-value=49 Score=25.81 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
-+.++..+...-+.|+|++++.++.+++..+|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID 36 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 357788888888999999999999999876553
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=45.57 E-value=90 Score=23.13 Aligned_cols=57 Identities=14% Similarity=-0.030 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~ 207 (247)
.+.|...|++|+.++.. . .+|...+.++..-...|.-.|+.++|+...++|++-+-.
T Consensus 123 ~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 123 LAGARQEYEKSLVYAQQ-A--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-c--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999863 2 245555555555555556689999999888887776543
No 139
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.34 E-value=1.6e+02 Score=25.92 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHHH
Q 025822 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA-RRASWRILSS 68 (247)
Q Consensus 7 re~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~-~R~s~R~l~~ 68 (247)
.+-+.+++.+....|+|++++....+++..+|.. .+=.+.+..+|... +. ...+...+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-~~a~~~~g~~l~~~-g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-YTVWHFRRVLLKSL-QKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHc-ccCHHHHHHHHHH
Confidence 3456678888888999999999999999988874 33344444444433 32 4455555543
No 140
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=45.22 E-value=1.2e+02 Score=24.60 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 110 (247)
|+||.|-|.=|....|...-..|.++|.+..--. +.+..+ .+-++-.++.++++..+.+..+.-||..
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-----~iseD~~k~~e~~iQkltd~~i~~id~~ 174 (185)
T 1wqg_A 103 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-----EAGEDEVGRAEKDLDKTTHQYVTQIDEL 174 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888888888888742111 111001 0113344455666666666666666654
No 141
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=44.94 E-value=75 Score=22.04 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
..|..-|++|+......- ...+.+-.+..++++-+| -+|+.++|+...++|+.
T Consensus 22 ~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 22 YHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHh
Confidence 467888899987764221 112333344455555555 57999999998888764
No 142
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=44.87 E-value=47 Score=27.20 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-..|.++|.+..--.+.- +.......+-++-.++.++++..+.+..+.-||..+
T Consensus 104 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~l-Kk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKL-KKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888743111100 000000011234455666677777777777666543
No 143
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=44.44 E-value=49 Score=27.03 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025822 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQ----KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (247)
Q Consensus 38 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~----~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 111 (247)
|+||.|-|.=|....|...-..|.++|.+..--. +.+..+ .+-++-.++.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1is1_A 103 PPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDK-----EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888743111 101001 01134445566666666666666666543
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=43.71 E-value=32 Score=26.17 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|..+|++|+.+ .|.+|. ...|.++.|.. +|+.++|+..-++|+.
T Consensus 87 ~~Ai~~~~~al~l-----~P~~~~---~~~~lg~~~~~-lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 87 QQAADLYAVAFAL-----GKNDYT---PVFHTGQCQLR-LKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH-----SSSCCH---HHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----CCCCcH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 4688899988755 355553 34566665554 7999988876555544
No 145
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=43.41 E-value=26 Score=31.83 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~l 209 (247)
.+.|...|++|+.. +| ...+-+.|+-|..+..|+.+.|.+.+.++|+.|+..+
T Consensus 62 ~~~a~~~~~ral~~--------~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~ 114 (530)
T 2ooe_A 62 YDKVEKLFQRCLMK--------VL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI 114 (530)
T ss_dssp HHHHHHHHHHHTTT--------CC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--------CC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC
Confidence 45788888888632 23 2457888888999999999999999999999998754
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=43.35 E-value=34 Score=27.09 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCCcchh-hhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHH
Q 025822 149 ANSMKAYETATTAAE--ADLPPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQ 225 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~--~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilq 225 (247)
+.|..+|.+|+++-. -.+.|.++--+ .-..|-++-+. -+|+.++|+.--++|+.-. .-+-..+++...+.+
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~-----p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMI-----EERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH-----HHCCSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHH
Confidence 468889999988722 24566554111 00123333332 3799999987555544332 223334556666666
Q ss_pred HHHhhHh
Q 025822 226 LLRDNLT 232 (247)
Q Consensus 226 lLrdNl~ 232 (247)
.+.+.+.
T Consensus 148 ~~~~~~~ 154 (159)
T 2hr2_A 148 VAIDRIA 154 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=43.28 E-value=43 Score=30.52 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=6.9
Q ss_pred hCChHHHHHHHHHHH
Q 025822 188 MNSPERACHLAKQAF 202 (247)
Q Consensus 188 ~~~~~~A~~iak~af 202 (247)
+|+.++|+...++|+
T Consensus 87 ~g~~~eA~~~~~~al 101 (477)
T 1wao_1 87 LGKFRAALRDYETVV 101 (477)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 355555544444433
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=42.92 E-value=31 Score=31.20 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhcCCC--------CCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPP--------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~p--------t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|...|++|+.+... .+. .+|.+..+.+|.+..|+. +|+.++|+...++|+.
T Consensus 285 ~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 285 MQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 5788888888876532 110 134567778888888777 6999999988887754
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=42.82 E-value=17 Score=31.36 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcC-------CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADL-------PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L-------~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|..+|++|+.+....- ...+|.+..+.+|.+..|+. +|+.++|+...++|+.
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 150
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=42.35 E-value=68 Score=23.02 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 204 (247)
+.|.+.|++++.. .|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 93 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 93 DLAVPLLIKVAEA-----NPINF---NVRFRLGVALDN-LGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CcHhH---HHHHHHHHHHHH-cCcHHHHHHHHHHHHhc
Confidence 4677788887755 23333 334455555544 69999999988887654
No 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=42.02 E-value=1.4e+02 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.+.++.+..+.|+++++.....+++...|.
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 131 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDI 131 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Confidence 456777888888898888888888876553
No 152
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=41.83 E-value=1.9e+02 Score=25.82 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=75.0
Q ss_pred HhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhh-hHHHHHHHHHhhhhhhhCchH-HHHHHHHHHHHHHHHH
Q 025822 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGAR-RASWRILSSIEQKEEAKGNEV-NAKRIKEYRQKVESEL 96 (247)
Q Consensus 19 q~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~-R~s~R~l~~~e~~~~~~~~~~-~~~~i~~yk~ki~~EL 96 (247)
..+++++.+..+.++... .+-..+-...+..+|-. .+.. ..|...+....+... .+.. ....-.-|...
T Consensus 80 ~~~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~----- 150 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKK----- 150 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc-----
Confidence 345577777777776543 33455556666666543 4455 566666544322211 1111 11111111110
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhh
Q 025822 97 SDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGL 176 (247)
Q Consensus 97 ~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL 176 (247)
.--.+.+...+..|-- ++.. ..+...|..|+.+.. ....++..-.+.|...|++|+++ .|.+|. .
T Consensus 151 -g~~~~A~~~~~~al~~---~p~~--~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 215 (474)
T 4abn_A 151 -GDVTSAHTCFSGALTH---CKNK--VSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQM-----DVLDGR---S 215 (474)
T ss_dssp -TCHHHHHHHHHHHHTT---CCCH--HHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHH-----CTTCHH---H
T ss_pred -CCHHHHHHHHHHHHhh---CCCH--HHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHh-----CCCCHH---H
Confidence 1112333333333321 1222 334456666655422 11122333456889999999865 345542 2
Q ss_pred hhhhHHHHHHH---h----CChHHHHHHHHHHHH
Q 025822 177 ALNFSVFYYEI---M----NSPERACHLAKQAFD 203 (247)
Q Consensus 177 ~LN~SVF~yEi---~----~~~~~A~~iak~afd 203 (247)
..|.+..|... . |+.++|+...++|+.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 33444444332 1 567777666655554
No 153
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=41.11 E-value=50 Score=21.05 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-+..++.+..+.|+|++++.++++.+..+|.- .+=...+..+|-. .+....+...+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~ 68 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYK-QGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 345678888999999999999999999877653 3444455555543 4555666666654
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=40.94 E-value=43 Score=22.13 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 11 ~~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
+.+|....+.|+|++++..++++++.+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 32 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV 32 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45666667777777777777777766554
No 155
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=39.75 E-value=79 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
+-+..++.+..+.|+|++++..+.+++..+|..
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 345567777778888888888888888777665
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=39.63 E-value=43 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhh--cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 153 ~~Y~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
.-|++|....+. .+.|.+ .....+.+..++ -+|+.++|+...++|+.-.-
T Consensus 52 ~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 52 QQPEQALADCRRALELDGQS---VKAHFFLGQCQL-EMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 345566655543 333443 344455555544 46888888888777776543
No 157
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=39.60 E-value=80 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
+.+..++.+....|+|++++....+++..+|.-
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 456778888889999999999999999887653
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=38.83 E-value=1e+02 Score=21.75 Aligned_cols=59 Identities=15% Similarity=0.012 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.....++....+.|+|++++..+++++..+|. +.+=...+..+|-. .+....|...+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~-~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAE-NEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 45678888888999999999999999988776 34555666666543 3445555555543
No 159
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=38.58 E-value=1.1e+02 Score=22.01 Aligned_cols=78 Identities=9% Similarity=0.144 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh---hhCchHHHHHHHHHHHHHHHHHHHH
Q 025822 23 YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE---AKGNEVNAKRIKEYRQKVESELSDI 99 (247)
Q Consensus 23 y~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~---~~~~~~~~~~i~~yk~ki~~EL~~~ 99 (247)
|...+.-+...+..-+.++.++|+-.......-+..-..=++.+. +|-+.- ..........++.||..+..+|..-
T Consensus 10 f~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMe-lE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 10 FKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMD-VEVNNSIGDASERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555445688889999887777777776544444332 222211 0112235678899988887766543
Q ss_pred HH
Q 025822 100 CN 101 (247)
Q Consensus 100 c~ 101 (247)
-+
T Consensus 89 lk 90 (97)
T 3onj_A 89 LQ 90 (97)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=38.27 E-value=3.9e+02 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.9
Q ss_pred hhHHHHHHHhCChHHHHHHHHHH
Q 025822 179 NFSVFYYEIMNSPERACHLAKQA 201 (247)
Q Consensus 179 N~SVF~yEi~~~~~~A~~iak~a 201 (247)
.-.+-+|+-.|..++||.+..+|
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567889999999999999988
No 161
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=37.86 E-value=1.4e+02 Score=23.19 Aligned_cols=62 Identities=6% Similarity=-0.011 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE--LTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~--Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e 70 (247)
+.+..+|...-+.|+|++++..+++++...|. ...+-...+..+|-. .+....|...+..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 35667888899999999999999999986654 334445555555432 455666666665544
No 162
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=35.14 E-value=1.4e+02 Score=22.22 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (247)
.-+..++.+....|+|++++.++.+++..+|.. ..-...+..+|-...+....+...+....+
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 345678888889999999999999999876653 444455555554432556667776655443
No 163
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=34.67 E-value=29 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 206 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai 206 (247)
-+.|.++|++|..- .- .| .+++...+|+.|||.+||.=.
T Consensus 19 YE~A~~~Ye~a~~n---g~---~p--------------Q~~Kql~KA~NIAKse~drd~ 57 (199)
T 3ub0_A 19 YEKARADLEEAKKN---DV---SP--------------QLLKQLTKACNIAKSEFEREA 57 (199)
T ss_dssp HHHHHHHHHHHHHT---TC---CH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CC---CH--------------HHHHHHHHHHHHHHHHHhHHH
Confidence 46788888888422 22 22 235778899999999998633
No 164
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=34.34 E-value=63 Score=24.47 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcC--------CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADL--------PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L--------~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 202 (247)
+.|...|++|+++...+- ...+|-......|.+..++. +|+.++|+...++|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Confidence 568889999886542100 00233444556677776665 699999988766654
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=34.03 E-value=89 Score=22.06 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=13.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 025822 12 YVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (247)
Q Consensus 12 ~~aklaeq~ery~Dm~~~mk~~i~~~~~ 39 (247)
.++.+..+.|++++++.+++++++.+|.
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 56 SLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444444445555555555554444443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=32.92 E-value=1.1e+02 Score=23.23 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~ 69 (247)
.-+..+|.+..+.|+|++++.+..+++..+|.- ..=...+..+|- ..+....|...+...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~-~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLGVANM-YFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHH-HcccHHHHHHHHHHH
Confidence 345678888889999999999999999886653 444555666653 345566666666543
No 167
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=32.53 E-value=19 Score=26.29 Aligned_cols=60 Identities=12% Similarity=0.250 Sum_probs=38.8
Q ss_pred CchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh----hhhhhHHHH
Q 025822 118 GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFY 184 (247)
Q Consensus 118 ~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLg----L~LN~SVF~ 184 (247)
+.+.+|+ .|+-.-|+-.+...-+ .-+..+.+..+.|++--+ ..|.||..|+ +.-+|++|+
T Consensus 4 ~~~~~~~---~~~~~~~Ld~vs~~f~--~~a~~~~~~l~~Al~~L~--~~psNPa~LAe~Qa~lseynl~R 67 (92)
T 2g0u_A 4 PPTPLLA---DYEWSGYLTGIGRAFD--DGVKDLNKQLQDAQANLT--KNPSDPTALANYQMIMSEYNLYR 67 (92)
T ss_dssp CCCCCTT---SSSSTHHHHHHHGGGC--TTTHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHh---cCcccchHHHHHHHHH--HHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Confidence 4456676 4566667766654322 224556677777775543 6889999998 666777765
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=32.50 E-value=81 Score=24.84 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=53.2
Q ss_pred cccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCc---chhhhhhhhHHHH----HHHhCChHHHHHHHHH
Q 025822 128 KGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFY----YEIMNSPERACHLAKQ 200 (247)
Q Consensus 128 kgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~p---irLgL~LN~SVF~----yEi~~~~~~A~~iak~ 200 (247)
.|.-+.=+..+..+.+..+..+.|..+|++|+++ .|.++ ..||.++.---++ -+-.|+.++|+.
T Consensus 42 ~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~---- 112 (158)
T 1zu2_A 42 WGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ---- 112 (158)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH----
Confidence 3445555556666666667788999999999865 34554 3455554322221 011245666665
Q ss_pred HHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhc
Q 025822 201 AFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWT 235 (247)
Q Consensus 201 afd~ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~ 235 (247)
+|+.|++ ++ .+ +.+...-+++..++-.+|.
T Consensus 113 ~~~kAl~-l~---P~-~~~y~~al~~~~ka~el~~ 142 (158)
T 1zu2_A 113 FFQQAVD-EQ---PD-NTHYLKSLEMTAKAPQLHA 142 (158)
T ss_dssp HHHHHHH-HC---TT-CHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHH-hC---CC-CHHHHHHHHHHHhCHhccC
Confidence 5666664 22 11 2344555666777777665
No 169
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=32.14 E-value=1.9e+02 Score=22.81 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHhhh-------hhhhhHHHHHHHHHhh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE--LTVEERNLLSVGYKNV-------IGARRASWRILSSIEQ 71 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~--Lt~eERnLls~ayKn~-------i~~~R~s~R~l~~~e~ 71 (247)
+-+..++.+..+.|+|++++..+++++...|. ...+-...+..+|-.. .+....|...+..+..
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 34678899999999999999999999987664 3344455556665442 5666677777665443
No 170
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=32.06 E-value=48 Score=24.60 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhhhh
Q 025822 21 ERYDEMVDAMKNVAKLD-VELTVEERNLLSVGYKNVI 56 (247)
Q Consensus 21 ery~Dm~~~mk~~i~~~-~~Lt~eERnLls~ayKn~i 56 (247)
++|+.++..++.+-..+ ..++.+++-.|---||...
T Consensus 10 ~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt 46 (106)
T 2wh5_A 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQAT 46 (106)
T ss_dssp HHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhc
Confidence 56888888888765432 2689999988888888864
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=31.60 E-value=89 Score=23.02 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCCh--HHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSP--ERACHLAKQAFDE 204 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~--~~A~~iak~afd~ 204 (247)
+.|..+|++|+.+. |.+| ....+.+..+|.-.|+. ++|+...++++..
T Consensus 61 ~~A~~~~~~al~~~-----p~~~---~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 61 SNSLLAYRQALQLR-----GENA---ELYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHHHHHHHHHH-----CSCH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-----CCCH---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 57899999998764 3443 34556666656557887 9998887777643
No 172
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=30.82 E-value=1.6e+02 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
+-...+|.+..+.|||++++..+.+++..+|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 345677788888888888888888888777765
No 173
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=29.51 E-value=1.3e+02 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.028 Sum_probs=34.7
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCC-cchhhhhhhhHHHHHHHhC
Q 025822 136 AEFKFGDEKKEAAANSMKAYETATTAAEADLPPTH-PIRLGLALNFSVFYYEIMN 189 (247)
Q Consensus 136 aE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~-pirLgL~LN~SVF~yEi~~ 189 (247)
||....+.-.+++++|.++|++|++..++ +..|+ |--.-..||- +-.||..|
T Consensus 436 ~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k-~~~tdd~~~v~~~~~~-ak~yE~aG 488 (526)
T 2wb7_A 436 AKGMNNENAIEYAQGAIDEYKAAINDLQK-AAQQDDYQMFLNYLNA-AKKHEMAG 488 (526)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HTTCCSHHHHHHHHHH-HHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHh-hhccCCHHHHHHHHHH-hhhhhhcc
Confidence 66677777788999999999999999864 55444 4333334433 33366544
No 174
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=28.77 E-value=93 Score=30.34 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 148 ~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
.+.|.++|++|+++ .|.+ .....|.+..|++ +|+.++|+...++|+.
T Consensus 93 ~~~A~~~~~kAl~l-----~P~~---~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 93 VQGALQCYTRAIQI-----NPAF---ADAHSNLASIHKD-SGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 35789999999865 3444 3445666666665 7999999998888765
No 175
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=28.59 E-value=2e+02 Score=22.21 Aligned_cols=46 Identities=4% Similarity=-0.122 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHh
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV--EERNLLSVGYK 53 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~--eERnLls~ayK 53 (247)
+-+..++.+..+.|+|++++..+++++...|.-.. +-.-.+..+|-
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 44677899999999999999999999988776443 23444555553
No 176
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=28.55 E-value=2.5e+02 Score=23.25 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=59.7
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHH
Q 025822 13 VAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKV 92 (247)
Q Consensus 13 ~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 92 (247)
.|+|.+...+|--||+-+|.-.. +..|..|.=.-||=-+.. ++.+. ....++..=+..-.+-
T Consensus 100 iarllekiqkyfQ~IEtlK~ql~-----nf~e~RLiYDHYKlKvdE----------LEK~~---KdSeKI~RNQsKLssA 161 (294)
T 3caz_A 100 IARLLEKIQKYRQEIEEIKKEYK-----ETDKYRERYDHYKVKLDN----------LEKKN---KDQERIERNQQKFKDA 161 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhHHH----------HHhcc---chHHHHHHhHHHhhhH
Confidence 56777777777777777754221 123444444445543332 22211 1122222222222333
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 025822 93 ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (247)
Q Consensus 93 ~~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~ 164 (247)
+.--...|-|+|+-.+ ++-|.|||.++|..+. +=...--|-+|++.|.+
T Consensus 162 EtaYkqvcsDiInkMn-----------------kll~n~~riineaasa------vwstqlqyakaleaaan 210 (294)
T 3caz_A 162 EAAYSSVCADLIQKME-----------------TVWKKHVSIFAEAASA------VWSTQLQYAKALEAAAN 210 (294)
T ss_dssp HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 4445667777777665 4467889999886543 22334468888888754
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=26.57 E-value=1.5e+02 Score=20.02 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV--EERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 10 l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~--eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
+..+|....+.|+|++++..+++++..+|.-.. +-...+..+|-. .+....|...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~ 64 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 445666666667777777777776665444332 333344444322 3444444444443
No 178
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=26.51 E-value=1.1e+02 Score=25.22 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 025822 149 ANSMKAYETAT 159 (247)
Q Consensus 149 ~~a~~~Y~~A~ 159 (247)
+.|...|++|+
T Consensus 151 ~~A~~~~~~a~ 161 (308)
T 2ond_A 151 KSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=26.40 E-value=1.8e+02 Score=20.94 Aligned_cols=71 Identities=6% Similarity=-0.081 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLr 228 (247)
+.|...|++|+.+ .|.+| ...++.+..|+. +|+.++|+...++|+.- +.++-......+..++
T Consensus 80 ~~A~~~~~~al~~-----~p~~~---~a~~~~g~~~~~-~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 80 HEAEETSSEVLKR-----EETNE---KALFRRAKARIA-AWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCcch---HHHHHHHHHHHH-HhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHH
Confidence 4678888888765 45554 344555555554 79999998876665543 2222223455555555
Q ss_pred hhHhhhcc
Q 025822 229 DNLTLWTS 236 (247)
Q Consensus 229 dNl~~W~~ 236 (247)
.-+..+..
T Consensus 143 ~~~~~~~~ 150 (162)
T 3rkv_A 143 ERRAEKKA 150 (162)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55554443
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=25.40 E-value=50 Score=28.34 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc--------------chhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHP--------------IRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~p--------------irLgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
+.|..+|++|+.+. |.++ ++..+.+|.+..|+. +|+.++|+...++|+.
T Consensus 196 ~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 196 EEAMQQYEMAIAYM-----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHHHHS-----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 181
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.80 E-value=4e+02 Score=25.12 Aligned_cols=189 Identities=17% Similarity=0.241 Sum_probs=97.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCHH---HHHHHHHH---HhhhhhhhhHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHH-
Q 025822 21 ERYDEMVDAMKNVAKLDVELTVE---ERNLLSVG---YKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVE- 93 (247)
Q Consensus 21 ery~Dm~~~mk~~i~~~~~Lt~e---ERnLls~a---yKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~- 93 (247)
++|.+-++-+++++........+ |-.+|-.| |..++..-+..+..|..-.+++...-+..-...+..||.++.
T Consensus 121 ~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~a 200 (526)
T 3iyk_A 121 EKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDA 200 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Confidence 55667777777777554445444 44566555 556777778888888776667654433344567777777653
Q ss_pred ------HHHHHHHHHHHHHHHhhcCCCCCCCchhhHHhhhcccccccchhcc--cCchhHHH---HHHHHHHHHHHHHH-
Q 025822 94 ------SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK--FGDEKKEA---AANSMKAYETATTA- 161 (247)
Q Consensus 94 ------~EL~~~c~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRYlaE~~--~~~~~~~~---~~~a~~~Y~~A~~~- 161 (247)
-|=..+-.|.|+= -.-|-||.---.||=. .|.--... ..-+...|+-.--+
T Consensus 201 L~~aIe~Er~~~~EEAIqe-----------------~~dmsaeI~E~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~ 263 (526)
T 3iyk_A 201 LKNAIEVERDGMQEEAIQE-----------------IAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVIN 263 (526)
T ss_pred HHHHHHHHHhHHHHHHHHH-----------------HhcchHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221110 1123333322222211 12222111 12335555543322
Q ss_pred -------HhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHH--HHHHHHHHhhcccCccchHhHHHHHHHHHh
Q 025822 162 -------AEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAK--QAFDEAISELDTLNEESYKDSTLIMQLLRD 229 (247)
Q Consensus 162 -------a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak--~afd~ai~~ld~l~ee~~~ds~~ilqlLrd 229 (247)
..-..|+.||--|..+|-. =+ .-.+|..-|.-+.. ..+++--.+++.+.++..+.....++--+.
T Consensus 264 aLtGidlsHl~~P~I~p~~iet~L~~-~~--~~i~D~~L~~~v~sK~~~v~E~~~Ev~Hi~~~i~P~~kk~~~~~~~ 337 (526)
T 3iyk_A 264 ALSGIDLTHLRTPKIEPSVVSTILEY-RA--KEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKE 337 (526)
T ss_pred HHhCCCchhccCCCCCHHHHHHHHhC-CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346889999988887742 01 12234433333322 446666667777777666655555544433
No 182
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=23.47 E-value=2.5e+02 Score=21.46 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.8
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 025822 13 VAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (247)
Q Consensus 13 ~aklaeq~ery~Dm~~~mk~~i~~~~~L 40 (247)
++.+..+.|+|++++.+++++++.+|.-
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 7888889999999999999999887763
No 183
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.67 E-value=98 Score=27.25 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcch-hhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025822 149 ANSMKAYETATTAAEADLPPTHPIR-LGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (247)
Q Consensus 149 ~~a~~~Y~~A~~~a~~~L~pt~pir-LgL~LN~SVF~yEi~~~~~~A~~iak~afd 203 (247)
++|.+.|++|++++ |-. +..-.-|+-|+..-.++.+.|....++|+.
T Consensus 221 ekA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 221 EKAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 57999999999874 322 455667777777767899998887777765
No 184
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=22.25 E-value=78 Score=25.38 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCCchhhHHhhhcccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchhhhhhhhHHHHHHHhCCh
Q 025822 116 SAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT----HPIRLGLALNFSVFYYEIMNSP 191 (247)
Q Consensus 116 ~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt----~pirLgL~LN~SVF~yEi~~~~ 191 (247)
.++++-.-|+++--.. -.+..+ ...++-.+.|+.|.. .+||. ..-+.-|=++|+.| .++ +|+
T Consensus 11 ~~yd~W~~yl~llE~~------g~p~~d--~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~ 76 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKN------SVPLSD--ALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAEL-KAI-QEP 76 (161)
T ss_dssp CSHHHHHHHHHHHHHH------TCSCCH--HHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHH-HHH-HCG
T ss_pred CCHHHHHHHHHHHHHc------CCCchh--hHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHH-HHh-cCH
Confidence 4667776666652211 001122 567788899998863 46664 33445588999998 455 899
Q ss_pred HHHHHHHHHHH
Q 025822 192 ERACHLAKQAF 202 (247)
Q Consensus 192 ~~A~~iak~af 202 (247)
++|.++=+.|.
T Consensus 77 d~aR~vy~~a~ 87 (161)
T 4h7y_A 77 DDARDYFQMAR 87 (161)
T ss_dssp GGCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888777763
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.82 E-value=1e+02 Score=25.33 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~ 38 (247)
+.+..+|.+..+.|+|++++.++.+++..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 35 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP 35 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3556777888888888888888888876554
No 186
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.73 E-value=26 Score=32.94 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=38.3
Q ss_pred cccccccchhcccCchhHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhh------HHHHHH----HhCChHHHHHH
Q 025822 128 KGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNF------SVFYYE----IMNSPERACHL 197 (247)
Q Consensus 128 kgDyyRYlaE~~~~~~~~~~~~~a~~~Y~~A~~~a~~~L~pt~pirLgL~LN~------SVF~yE----i~~~~~~A~~i 197 (247)
-||..||...+ ..|...|.+|..+.=.+=. .-..||+.-.+ +||||- +..-...|..=
T Consensus 158 LGDL~RY~~~~----------~~A~~~Y~~A~~~~P~~G~--~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 158 LGDIARYRNQT----------SQAESYYRHAAQLVPSNGQ--PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHCTTBSH--HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHHHHHHHHhCCCCCc--hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 79999999764 5799999999866411111 11456655544 566664 11223334444
Q ss_pred HHHHHHHHH
Q 025822 198 AKQAFDEAI 206 (247)
Q Consensus 198 ak~afd~ai 206 (247)
....|+.+.
T Consensus 226 L~~~f~~~~ 234 (497)
T 1ya0_A 226 LQKALSKAL 234 (497)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444455443
No 187
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=20.68 E-value=2.8e+02 Score=21.02 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 025822 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (247)
Q Consensus 8 e~l~~~aklaeq~ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (247)
.-...++.+..+.|+|++++.++++++..+|. +..=...+..+|.. .+....|...+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~ 101 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRD-MKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH-cccHHHHHHHHHH
Confidence 34567888999999999999999999988776 33334445555533 2445555555544
No 188
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.30 E-value=2.6e+02 Score=20.40 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHHHHHh---CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 025822 12 YVAKLAEQA---ERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (247)
Q Consensus 12 ~~aklaeq~---ery~Dm~~~mk~~i~~~~~Lt~eERnLls~ayKn~i~~ 58 (247)
+.-+-|+.+ |||+|+|++-++.+ .+|+.|+|.+-+.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa-----------~yL~eAmkltqs~ 55 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT-----------TYLSEAMKLTESE 55 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHHHTTCCCH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHHHhhccH
Confidence 334555554 99999999998877 4688888887444
Done!