BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025823
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 256 bits (655), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 172/248 (69%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+LF + +
Sbjct: 120 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 179
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKH 119
QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H
Sbjct: 180 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 239
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+ EQ++L
Sbjct: 240 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQL 299
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + + +
Sbjct: 300 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 359
Query: 240 AKIYKRQK 247
KIYKRQK
Sbjct: 360 QKIYKRQK 367
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 256 bits (654), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 172/248 (69%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+LF + +
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKH 119
QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+ EQ++L
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQL 280
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + + +
Sbjct: 281 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 340
Query: 240 AKIYKRQK 247
KIYKRQK
Sbjct: 341 QKIYKRQK 348
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 171/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+LF + +
Sbjct: 120 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 179
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKH 119
QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H
Sbjct: 180 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 239
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG YFQ+QDD+LDCFG P + G VGTDI+D KCSWLVV+ L+ EQ++L
Sbjct: 240 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQL 299
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + + +
Sbjct: 300 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 359
Query: 240 AKIYKRQK 247
KIYKRQK
Sbjct: 360 QKIYKRQK 367
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 102 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 161
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 162 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 221
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 222 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 281
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 282 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 341
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 342 RKIYKRRK 349
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 103 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 162
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 163 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 222
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 223 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 282
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 283 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 342
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 343 RKIYKRRK 350
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 131 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 190
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 191 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 250
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 251 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 310
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 311 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 370
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 371 RKIYKRRK 378
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 109 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 168
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 169 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 228
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 229 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 288
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 289 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 348
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 349 RKIYKRRK 356
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 128 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 187
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 188 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 247
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 248 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 307
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 308 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 367
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 368 RKIYKRRK 375
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 127 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 186
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 187 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 246
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 247 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 306
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 307 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 366
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 367 RKIYKRRK 374
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 108 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 167
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YKTA+YSFYLP+A A+ MAG + +K H
Sbjct: 168 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEH 227
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 228 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 287
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 288 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 347
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 348 RKIYKRRK 355
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 127 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 186
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YK+A+YSFYLP+A A+ MAG + +K H
Sbjct: 187 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEH 246
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 247 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 306
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 307 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 366
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 367 RKIYKRRK 374
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 240 bits (613), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 168/248 (67%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ P VG+ A ND LL I R+LK + R++PYY++L++LF + +
Sbjct: 129 MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSY 188
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 119
QT GQ +DL+T +G DL +++ ++ IV+YK A+YSFYLP+A A+ MAG + +K H
Sbjct: 189 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKAAFYSFYLPIAAAMYMAGIDGEKEH 248
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG +FQ+QDD+LD FG P V GK+GTDI+D KCSWLVV+ L+ EQ ++
Sbjct: 249 ANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQI 308
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ ENYG+ + VA+VK LY+ LDL F++YE++SY + IE + AV
Sbjct: 309 LKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLA 368
Query: 240 AKIYKRQK 247
KIYKR+K
Sbjct: 369 RKIYKRRK 376
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 154/263 (58%), Gaps = 17/263 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MD S TRRG+PCW+R P V + A NDG+LL++ + + F D+P+ DLL FN V+
Sbjct: 152 MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVD 211
Query: 60 FQTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACA 108
+ TA GQ+ D+ + + K D ++++L ++RIV+YKTAYY++ LP+
Sbjct: 212 YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMG 271
Query: 109 LLM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166
L++ A +D V +++ + MG YFQVQDD +DCF PE +GKVGTDI+D KCSWL V
Sbjct: 272 LIVSEALPTVDMGV-TEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAV 330
Query: 167 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH 226
L + Q NYG D VA V+ LY+ DL+G +V YE E++ + IE
Sbjct: 331 TFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKL 390
Query: 227 P--TKEVQAVLKSFLAKIYKRQK 247
+ A +++ K YKRQK
Sbjct: 391 RLCSPGFAASVETLWGKTYKRQK 413
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 154/263 (58%), Gaps = 17/263 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MD S TRRG+PCW+R P V + A NDG+LL++ + + F D+P+ DLL FN V+
Sbjct: 129 MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVD 188
Query: 60 FQTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACA 108
+ TA GQ+ D+ + + K D ++++L ++RIV+YKTAYY++ LP+
Sbjct: 189 YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMG 248
Query: 109 LLM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166
L++ A +D V +++ + MG YFQVQDD +DCF PE +GKVGTDI+D KCSWL V
Sbjct: 249 LIVSEALPTVDMGV-TEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAV 307
Query: 167 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH 226
L + Q NYG D VA V+ LY+ DL+G +V YE E++ + IE
Sbjct: 308 TFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKL 367
Query: 227 P--TKEVQAVLKSFLAKIYKRQK 247
+ A +++ K YKRQK
Sbjct: 368 RLCSPGFAASVETLWGKTYKRQK 390
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MDGS RRG+PCW+R P V A NDG++L++ + ++F D+P+ DLL LF +V+
Sbjct: 100 MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD 159
Query: 60 FQTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACA 108
+ TA GQM D+ + + K D ++++ +++RIV+YKT +Y++ LP+
Sbjct: 160 YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMG 219
Query: 109 LLM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166
L + A +++ ++ V+ + +G YFQVQDD +DCF PE +GKVGTDIED KCSWL V
Sbjct: 220 LFVSEAAASVEMNL-VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAV 278
Query: 167 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 224
L N Q NYG DPA VA VK LY +L+ F YE E ++ IE
Sbjct: 279 TFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIE 336
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MDGS RRG+PCW+R P V A NDG++L++ + ++F D+P+ DLL LF +V+
Sbjct: 101 MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD 160
Query: 60 FQTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACA 108
+ TA GQM D+ + + K D ++++ +++RIV+YKT +Y++ LP+
Sbjct: 161 YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMG 220
Query: 109 LLM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166
L + A +++ ++ V+ + +G YFQVQDD +DCF PE +GKVGTDIED KCSWL V
Sbjct: 221 LFVSEAAASVEMNL-VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAV 279
Query: 167 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 224
L N Q NYG DPA VA VK LY +L+ F YE E ++ IE
Sbjct: 280 TFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MDGS RRG+PCW+R P V A NDG++L++ + ++F D+P+ DLL LF +V+
Sbjct: 101 MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD 160
Query: 60 FQTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACA 108
+ TA GQM D+ + + K D ++++ +++RIV+YKT +Y++ LP+
Sbjct: 161 YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMG 220
Query: 109 LLM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166
L + A +++ ++ V+ + +G YFQVQDD +DCF PE +GKVGTDIED KCSWL V
Sbjct: 221 LFVSEAAASVEMNL-VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAV 279
Query: 167 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 224
L N Q NYG DPA VA VK LY +L+ F YE E ++ IE
Sbjct: 280 TFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 137/237 (57%), Gaps = 15/237 (6%)
Query: 2 DGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
DGS RRG+PCW+R P V A NDG++L++ ++F D+P+ DLL LF +V++
Sbjct: 102 DGSVXRRGKPCWYRFPGVTTQCAINDGIILKSWTQIXAWHYFADRPFLKDLLCLFQKVDY 161
Query: 61 QTASGQMIDLITTIEGEK-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACAL 109
TA GQ D+ + + K D ++++ +++RIV+YKT +Y++ LP+ L
Sbjct: 162 ATAVGQXYDVTSXCDSNKLDPEVAQPXTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVXGL 221
Query: 110 LM--AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167
+ A +++ ++ V+ + +G YFQVQDD DCF PE +GKVGTDIED KCSWL V
Sbjct: 222 FVSEAAASVEXNL-VERVAHLIGEYFQVQDDVXDCFTPPEQLGKVGTDIEDAKCSWLAVT 280
Query: 168 ALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 224
L N Q NYG DPA VA VK LY +L+ F YE E ++ IE
Sbjct: 281 FLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 145/267 (54%), Gaps = 26/267 (9%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MD RR + CW+ + V A ND +LL N I ++++ + R++ YVD++ F +
Sbjct: 129 MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDAT 188
Query: 60 FQTASGQMIDLITTIEGEK---------------------DLSKYSLPLHRRIVQYKTAY 98
+T GQ +D T I +K D++ + +++ IV +KTAY
Sbjct: 189 LKTIIGQHLD--TNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAY 246
Query: 99 YSFYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDI 156
YSF+LP+ C +L+AG +D + +++DI + MG YFQ+ DD+LD FG GKVG+DI
Sbjct: 247 YSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDI 306
Query: 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESY 216
++ K +W ++K ELC+E K + +NYGK + ACV + LY+ + + YEK
Sbjct: 307 QNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQK 366
Query: 217 EKLTKSIEAHPTKEVQAVLKSFLAKIY 243
K+ +I + ++ VLK L ++
Sbjct: 367 AKILSAINELHHEGIEYVLKYLLEILF 393
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 145/267 (54%), Gaps = 26/267 (9%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MD RR + CW+ + V A ND +LL N I ++++ + R++ YVD++ F +
Sbjct: 128 MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDAT 187
Query: 60 FQTASGQMIDLITTIEGEK---------------------DLSKYSLPLHRRIVQYKTAY 98
+T GQ +D T I +K D++ + +++ IV +KTAY
Sbjct: 188 LKTIIGQHLD--TNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAY 245
Query: 99 YSFYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDI 156
YSF+LP+ C +L+AG +D + +++DI + MG YFQ+ DD+LD FG GKVG+DI
Sbjct: 246 YSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDI 305
Query: 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESY 216
++ K +W ++K ELC+E K + +NYGK + ACV + LY+ + + YEK
Sbjct: 306 QNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQK 365
Query: 217 EKLTKSIEAHPTKEVQAVLKSFLAKIY 243
K+ +I + ++ VLK L ++
Sbjct: 366 AKILSAINELHHEGIEYVLKYLLEILF 392
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 115/259 (44%), Gaps = 42/259 (16%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRN-------HISRILKNHFRDKPYYVDLLD 53
MD RRG PCW+ V A ND L+ +S + N K +
Sbjct: 118 MDSGKFRRGAPCWYIVHGQSN-AINDIFFLKMLSLSLIFELSSVFGNDIVMK-----IQK 171
Query: 54 LFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHR--RIVQYKTAYYSFYLPVACALLM 111
++NE F T GQ +DL DLSK R +V+ KT+ Y+FY+PV L +
Sbjct: 172 IYNESIFFTVLGQHLDL-----SYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTL 226
Query: 112 -------AGENLDKHVEVKDILVQMGIYFQVQDDFLD-CFGSPEVIGKVGTDIEDYKCSW 163
A NL ++ IL ++G ++QV +D D F DI +K +W
Sbjct: 227 SEIQVSSAQLNL-----IEAILYKLGEFYQVHNDVSDYLFNDSN-----ADDICRFKLTW 276
Query: 164 LVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSI 223
+ K+ E+ +EE K + ENYGK VK+ Y L + ++EY++ + + L K +
Sbjct: 277 PLQKSFEIADEEMKLKISENYGKNSSL----VKDCYNLLKINEHYLEYQRNALDYLIKLV 332
Query: 224 EAHPTKEVQAVLKSFLAKI 242
+ +Q V + +I
Sbjct: 333 KDITDDSLQKVFIHLIHQI 351
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 2 DGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQ 61
DGS RRG+P R+ + +A N G + + +L + ++L F+EV +
Sbjct: 83 DGSEERRGRPALHRLHPM-PLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRR 141
Query: 62 TASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVE 121
TA GQ +DL+ T+ G DL + R+V +K AYY+ P+ L+AG+ E
Sbjct: 142 TAYGQHLDLLWTLGGTFDLRPED---YFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYE 198
Query: 122 VKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALE 170
+ ++G FQ+ DD L+ G E GK D+ + K + ++++ LE
Sbjct: 199 EGGL--RLGTAFQIVDDVLNLEGG-EAYGKERAGDLYEGKRTLILLRFLE 245
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 120/276 (43%), Gaps = 42/276 (15%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAAN-DG----------VLLRNHISRILKNHFRDKPYYV 49
+D S TRRG P R + A N +G +L + ++ +D
Sbjct: 111 IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALVWAEDXLQDSGLSA 170
Query: 50 DLL----DLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPV 105
+ L D + + GQ++D+ + + S+ L + ++KTA Y+ P+
Sbjct: 171 EALARTRDAWRGXRTEVIGGQLLDIYL-----ESHANESVELADSVNRFKTAAYTIARPL 225
Query: 106 ACALLMAGENLDKHVEVKDILVQ----MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYK 160
+AG + ++ D L+ +GI FQ++DD L FG P + GK G DI + K
Sbjct: 226 HLGASIAGGS----PQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGK 281
Query: 161 CSWLVVKALELCNE---EQKKLVHENYGKV-DPACVAKVKELYKTLDLEGAFVEYEKESY 216
+ L+ AL+ ++ E + GKV P +A + E + GA E E+
Sbjct: 282 RTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRAT---GAEEEVEQR-I 337
Query: 217 EKLTKSIEAH-----PTKEVQAVLKSFLAKIYKRQK 247
+LT+S AH EV+A L++ + +R++
Sbjct: 338 SQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERRE 373
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 64 SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKT-AYYSFYLPVACALLMAGENLDKHVEV 122
GQM+D+ + EG+ L I + KT A +F + A + + +H+E
Sbjct: 152 GGQMLDMQS--EGQP----IDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLES 205
Query: 123 KDILVQMGIYFQVQDDFLDCFGSPEVIG-KVGTDIEDYKCSWL 164
+G+ FQ++DD LDC+G +G KVG+D+E+ K +++
Sbjct: 206 YS--YHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYV 246
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 90 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVI 149
R+++ KTA F ++ G D+ + D +GI FQ+ DD LD G I
Sbjct: 174 RVIRGKTAAL-FSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEI 232
Query: 150 GK-VGTDIEDYKCSWLVVKALELCNEEQK 177
GK G D + K + V+KA+ L +E ++
Sbjct: 233 GKNTGDDFRERKLTMPVIKAVALADEAER 261
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 8/187 (4%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD TRRG+P R+ V M +L + + + +L++ +
Sbjct: 89 MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKK-ARVLEVIVKASN 147
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 120
+ GQ DL E EK S ++ + ++ KT F ++ +N +
Sbjct: 148 ELCEGQARDL----EFEKK-STVTIEEYMEMISGKTGAL-FEASAKVGGIIGTDNEEYIK 201
Query: 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKL 179
+ +GI FQ+ DD LD + +GK VG+DI K + +V E +E+ K+
Sbjct: 202 ALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQR 261
Query: 180 VHENYGK 186
+ +GK
Sbjct: 262 FLKIFGK 268
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 91 IVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIG 150
I+Q KTA F + AG ++ K ++D + +G+ FQ+ DD LD G+ E +G
Sbjct: 187 IIQAKTAEL-FAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLG 245
Query: 151 K-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGK 186
K G D + K + ++ A+ + + G+
Sbjct: 246 KNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGR 282
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 7 RRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTA-- 63
RRG P C + + I A D L+ IL + + D + + +E+ +
Sbjct: 119 RRGLPTCHVKFGEANAILAGDA--LQTLAFSILSDANMPEVSDRDRISMISELASASGIA 176
Query: 64 ---SGQMIDLITTIEGEKDLSKYSLPLH--RRIVQYKTAYYSFYLPVACALLMAGENLDK 118
GQ +DL D +PL RI ++KT V L AG+ +
Sbjct: 177 GMCGGQALDL--------DAEGKHVPLDALERIHRHKTGAL-IRAAVRLGALSAGDKGRR 227
Query: 119 HVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQ 176
+ V D + +G+ FQVQDD LD G +GK G D + K ++ + LE ++
Sbjct: 228 ALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 287
Query: 177 KKLVHE 182
+ L+ +
Sbjct: 288 RDLIDD 293
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 7 RRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASG 65
RRG P C + + I A D L+ IL + D P D + E +ASG
Sbjct: 95 RRGLPTCHVKFGEANAILAGDA--LQTLAFSILSDA--DMPEVSDRDRISMISELASASG 150
Query: 66 -------QMIDLITTIEGEKDLSKYSLPLH--RRIVQYKTAYYSFYLPVACALLMAGENL 116
Q +DL D +PL RI ++KT V L AG+
Sbjct: 151 IAGMCGGQALDL--------DAEGKHVPLDALERIHRHKTGAL-IRAAVRLGALSAGDKG 201
Query: 117 DKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 174
+ + V D + +G+ FQVQDD LD G +GK G D + K ++ + LE +
Sbjct: 202 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 261
Query: 175 EQKKLVHE 182
+ + L+ +
Sbjct: 262 KARDLIDD 269
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 7 RRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASG 65
RRG P C + + I A D L+ IL + D P D + E +ASG
Sbjct: 96 RRGLPTCHVKFGEANAILAGDA--LQTLAFSILSDA--DMPEVSDRDRISMISELASASG 151
Query: 66 -------QMIDLITTIEGEKDLSKYSLPLH--RRIVQYKTAYYSFYLPVACALLMAGENL 116
Q +DL D +PL RI ++KT V L AG+
Sbjct: 152 IAGMCGGQALDL--------DAEGKHVPLDALERIHRHKTGAL-IRAAVRLGALSAGDKG 202
Query: 117 DKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 174
+ + V D + +G+ FQVQDD LD G +GK G D + K ++ + LE +
Sbjct: 203 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 262
Query: 175 EQKKLVHE 182
+ + L+ +
Sbjct: 263 KARDLIDD 270
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 130 GIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVK-ALELCNEEQKKLVHENYGKV 187
G+ FQ+ DD LD +G P+ GK +G DI+++K VV AL E +++ + E +
Sbjct: 218 GVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAR- 276
Query: 188 DPACVAKVKELYKTLDLEGA 207
+ A V+E LD GA
Sbjct: 277 EVVEEADVREAVALLDSVGA 296
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 1 MDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
MD RRG+P C + + I A D L+ +L N +P + L E+
Sbjct: 90 MDNDELRRGKPTCHIQFDEATAILAGDA--LQTFAFELLSNPTSAQPELA--IKLIQELV 145
Query: 60 FQTA-----SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE 114
+ +GQMIDL + K++S L ++ +KT V L G+
Sbjct: 146 VASGRNGMITGQMIDLSSE---NKNISLAEL---EQMHVHKTGAL-IKASVRMGALSTGQ 198
Query: 115 NLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSW 163
+ + D +G+ FQVQDD +D E +GK +D E K ++
Sbjct: 199 VKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATY 249
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 128 QMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELC 172
++G+ FQ++DD LD G+ + +GK V D E K +++ + LE C
Sbjct: 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEEC 287
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 107 CAL----LMAGE-------NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV-GT 154
CA+ L AGE +LD++ E +G+ FQVQDD LD E +GK G+
Sbjct: 194 CAIRLGALAAGEKGRAMLPHLDRYAEA------VGLAFQVQDDILDIISDTETLGKPQGS 247
Query: 155 DIEDYKCSWLVVKALE 170
D E K ++ + LE
Sbjct: 248 DQELNKSTYPALLGLE 263
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKAL 169
+G+ FQ+ DD LD G+ E GK +G D E +K +++ + L
Sbjct: 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGL 249
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKAL 169
+G+ FQ+ DD LD G+ E GK +G D E +K +++ + L
Sbjct: 209 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGL 250
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGV--LLRNHISRILKNHFRDKPYYVDLLDLFNE 57
+D + RRG P R + + A DG+ L + IS I + ++ F+E
Sbjct: 91 IDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEE---------FSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
+ G+ +D +E E+ + S + R+ + T F + ++ G +
Sbjct: 142 TAYXLLLGEAMD----VEFERRXMEVSQEMVERMYAFXTGAL-FAFCFSAPFILXGXD-- 194
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIE 157
H + + G+ FQ+ DD D GS E +GK +G D E
Sbjct: 195 -HTXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE 234
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 64 SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVK 123
SGQM D IEGEK SL L ++ + + AL+ G ++ EV
Sbjct: 160 SGQMGD----IEGEK----VSLTLEELAAVHEKKTGAL---IEFALIAGGVLANQTEEVI 208
Query: 124 DILVQM----GIYFQVQDDFLDCFGSPEVIG-KVGTDIEDYKCSW 163
+L Q G+ FQ++DD LD + +G KVG D K ++
Sbjct: 209 GLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTY 253
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLL--RNHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENY--GK 186
+GI FQ++DD D F S ++ G D+ + K + + AL + + + G
Sbjct: 206 IGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGT 265
Query: 187 VDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKS----IEAHPTKEVQAVLKSFLAKI 242
P + ++ E K + +EY + E+ K + A P + L+++L +
Sbjct: 266 ATPDEIVRLIEFTK----DNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDYV 321
Query: 243 YKRQK 247
R+K
Sbjct: 322 VAREK 326
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 32/178 (17%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR-------------- 129
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHR----RIVQYKTAYYSFYLPVACALLMAG 113
A+ +I ++ E + LS+Y P+ + RIV+ K+ F L + L+ G
Sbjct: 130 ----RAALNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGAL-FGLALQLPALLEG 183
Query: 114 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
E + ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 184 ELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGK 151
+G+ FQ+QDD+LD + +++GK
Sbjct: 222 IGLVFQMQDDYLDLYAPTQILGK 244
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV 187
+G+ FQVQDD LD +GK G DI K ++ + L E +L + +
Sbjct: 222 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHAL 281
Query: 188 DP--ACVAKVKELYK 200
P A ++EL +
Sbjct: 282 RPFDAAAEPLRELAR 296
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 32/178 (17%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RRG+ F +AA D VL+ + + I N R
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKAR-------------- 129
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHR----RIVQYKTAYYSFYLPVACALLMAG 113
A+ +I ++ E + LS+Y P+ + RIV+ K+ F L + L+ G
Sbjct: 130 ----RAALNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGAL-FGLALQLPALLEG 183
Query: 114 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
E + ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 184 ELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV 187
+G+ FQVQDD LD +GK G DI K ++ + L E +L + +
Sbjct: 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHAL 274
Query: 188 DP--ACVAKVKELYK 200
P A ++EL +
Sbjct: 275 RPFDAAAEPLRELAR 289
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 1 MDGSHTRRGQPC----WFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFN 56
MD + RRG P W V ++A G +L H S ++ D + F
Sbjct: 118 MDEASMRRGVPSANARWDN--SVAILA---GDILLAHASGLMSQ------LGTDTVAHFA 166
Query: 57 EVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYY---SFYLPVACALLMAG 113
E + +GQM + + G +D + + +++ KT + YL A A
Sbjct: 167 ETFGELVTGQMRETV----GPRDTDP--IEHYTNVIREKTGVLIASAGYLGAMHAG-AAP 219
Query: 114 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV-GTDIEDYKCSWLVVKAL 169
E++D +K+ +G+ FQ+ DD +D F GK GTD+ + + V+ AL
Sbjct: 220 EHIDA---LKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYAL 273
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ RG+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNE 57
+DG+ R G+ F +AA D VL+ + + I N R +++++ +E
Sbjct: 84 IDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSE 141
Query: 58 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 117
E LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 142 AE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE 187
Query: 118 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 ---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
+DG+ RRG+ F +AA D VL+ + + + + ++++ +E E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEAE 143
Query: 60 FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH 119
LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 144 ----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE-- 187
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 -DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 1 MDGSHTRRGQPCW-FRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
+DG+ RRG+ F +AA D VL+ + + + + ++++ +E E
Sbjct: 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEAE 143
Query: 60 FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH 119
LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 144 ----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE-- 187
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 170
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 -DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 127 VQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHE 182
+++G+ FQ+ DD +D S E GK T+ + +K S++ + LE + ++ L++E
Sbjct: 205 LKLGLIFQINDDIIDVTTSQEQSGK-PTNNDIHKNSFVNLLGLEQAIKTKENLLNE 259
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 84 SLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLD 141
S + R + KTA + +C L LD+ +K +G+ +Q+ DD LD
Sbjct: 159 SFTAYLRRINRKTA---ILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILD 215
Query: 142 CFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEE 175
+GK VG+DI + ++ ++ A+ E+
Sbjct: 216 YTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQ 250
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 127 VQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGK 186
++MG+ FQV DD +D E GK T ++ K S++ + LE N + L E
Sbjct: 227 LKMGLCFQVLDDIIDVTQDEEESGKT-THLDSAKNSFVNLLGLERANNYAQTLKTEVLND 285
Query: 187 VD 188
+D
Sbjct: 286 LD 287
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 127 VQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGK 186
++MG+ FQV DD +D E GK T ++ K S++ + LE N + L E
Sbjct: 220 LKMGLCFQVLDDIIDVTQDEEESGKT-THLDSAKNSFVNLLGLERANNYAQTLKTEVLND 278
Query: 187 VD 188
+D
Sbjct: 279 LD 280
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 128 QMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVV 166
+G+ FQ DD L +G P+ GK +D+ K S VV
Sbjct: 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVV 254
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 64 SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVK 123
+G+ +++ ++ E +YS+ + + YKTA A A+L G+ + V
Sbjct: 167 TGETMEITSSTE-----QRYSMDYYMQKTYYKTASLISNSCKAVAVL-TGQTAEVAVLAF 220
Query: 124 DILVQMGIYFQVQDDFLDCFGSPEVIGK 151
+ +G+ FQ+ DD LD G+ +GK
Sbjct: 221 EYGRNLGLAFQLIDDILDFTGTSASLGK 248
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 129 MGIYFQVQDDFLDCFGSPEVIGKV-GTDIEDYKCSWLVVKALELCNEEQKKLVHE 182
+G+ FQ+QDD LD + +GK G D + K ++ + L E+ +++ HE
Sbjct: 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM-HE 274
>pdb|2BBZ|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|B Chain B, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|C Chain C, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|D Chain D, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 249
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 179 LVHENYGKVDPACVAKVKELYKT---LDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234
L EN G V P+ V+ + ++ +T LDL VEYE++ + A P+ V+ +
Sbjct: 141 LALENVGLVSPSSVSVLADMLRTLRRLDLCQQLVEYEQQEQARYRYCYAASPSLPVRTL 199
>pdb|3FHD|A Chain A, Crystal Structure Of The Shutoff And Exonuclease Protein
From Kaposis Sarcoma Associated Herpesvirus
Length = 508
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 104 PVACALLMAGENLDKHVEVKDILVQMGIYF 133
PV C + G+ LD HVE+ +L+ +YF
Sbjct: 439 PVNCTI--GGDALDPHVEIPTLLIVTPVYF 466
>pdb|3POV|A Chain A, Crystal Structure Of A Sox-Dna Complex
Length = 488
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 104 PVACALLMAGENLDKHVEVKDILVQMGIYF 133
PV C + G+ LD HVE+ +L+ +YF
Sbjct: 419 PVNCTI--GGDALDPHVEIPTLLIVTPVYF 446
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 64 SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVK 123
+GQ++D+ + E L H + + V ++ G ++ +++
Sbjct: 154 AGQVVDVCSEGMAEVGLD------HLEFIHHHKTAALLQGSVVLGAILGGGKEEEVAKLR 207
Query: 124 DILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALE--------LCNE 174
+G+ FQV DD LD S + +GK G D+ K ++ + +E L E
Sbjct: 208 KFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVEKSKEFADRLNRE 267
Query: 175 EQKKLVHENYGKVDP 189
Q++L+H + + P
Sbjct: 268 AQEQLLHFHPHRAAP 282
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 81 SKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFL 140
++YS+ + + YKTA A A+L G+ + V + +G+ FQ+ DD L
Sbjct: 179 ARYSMDYYMQKTYYKTASLISNSCKAVAVL-TGQTAEVAVLAFEYGRNLGLAFQLIDDIL 237
Query: 141 DCFGSPEVIGK 151
D G+ +GK
Sbjct: 238 DFTGTSASLGK 248
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 130 GIYFQVQDDFLDCFGSPEVIGKV 152
G+ FQ+ DD LD SP +GK
Sbjct: 218 GLAFQIYDDILDVVSSPAEMGKA 240
>pdb|2BBR|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 195
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 179 LVHENYGKVDPACVAKVKELYKT---LDLEGAFVEYEKE 214
L EN G V P+ V+ + ++ +T LDL VEYE++
Sbjct: 141 LALENVGLVSPSSVSVLADMLRTLRRLDLCQQLVEYEQQ 179
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 90 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVI 149
RI++ KTA++ + A+L+ N D + D + G+ FQ+ DD LD + +
Sbjct: 157 RILEDKTAHFIEASLKSMAILL---NKDAKI-YADFGLNFGMAFQIIDDLLDITQDAKTL 212
Query: 150 GKVGTDIEDYK 160
GK + D+K
Sbjct: 213 GK--PNFSDFK 221
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 100 SFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTD 155
+FY P A A+ MA L V + Q+ + V+D ++ G P VIG G +
Sbjct: 235 AFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYV---GVPTVIGANGVE 287
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 22 IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS 81
+ +DG + ++R+ N+ + + Y DL+ L N+ Q + Q D++ +EG +
Sbjct: 172 VMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVM-EVEGANN-- 228
Query: 82 KYSLPLHRRIVQYKTA 97
+ L R Q K A
Sbjct: 229 RLQLAALERYFQNKQA 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,506,066
Number of Sequences: 62578
Number of extensions: 317193
Number of successful extensions: 961
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 84
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)