Query 025823
Match_columns 247
No_of_seqs 224 out of 1304
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 5.3E-57 1.8E-61 397.3 24.0 233 1-246 108-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 1.5E-56 5.3E-61 394.3 26.4 234 1-247 96-333 (341)
3 1uby_A FPS, farnesyl diphospha 100.0 1.6E-56 5.5E-61 398.0 24.5 247 1-247 120-367 (367)
4 3dyh_A Farnesyl pyrophosphate 100.0 6.7E-57 2.3E-61 402.8 22.1 247 1-247 129-390 (390)
5 1wy0_A Geranylgeranyl pyrophos 100.0 1.4E-56 4.8E-61 395.9 23.1 239 1-247 89-342 (342)
6 3rmg_A Octaprenyl-diphosphate 100.0 3.4E-56 1.2E-60 391.4 23.4 233 1-247 90-326 (334)
7 1yhl_A Farnesyl pyrophosphate 100.0 4.7E-56 1.6E-60 395.3 24.3 245 1-247 101-362 (362)
8 3tc1_A Octaprenyl pyrophosphat 100.0 1.2E-55 4E-60 384.6 25.7 226 1-243 80-307 (315)
9 3mav_A Farnesyl pyrophosphate 100.0 1.1E-55 3.9E-60 396.6 26.0 245 1-245 128-394 (395)
10 2qis_A Farnesyl pyrophosphate 100.0 6.5E-56 2.2E-60 395.0 24.2 245 1-247 127-374 (374)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.5E-55 5.1E-60 387.4 23.8 237 1-247 82-330 (330)
12 3lmd_A Geranylgeranyl pyrophos 100.0 2.1E-55 7.3E-60 388.5 23.4 230 1-246 118-351 (360)
13 2ihi_A Pyrophosphate synthase; 100.0 5.8E-55 2E-59 390.3 25.1 246 1-246 128-395 (395)
14 4dhd_A Polyprenyl synthetase; 100.0 5.9E-55 2E-59 386.5 24.8 237 1-247 88-336 (358)
15 3lk5_A Geranylgeranyl pyrophos 100.0 6.4E-55 2.2E-59 388.6 24.7 239 1-246 111-372 (380)
16 3nf2_A Putative polyprenyl syn 100.0 4.8E-55 1.6E-59 386.1 23.5 235 1-246 97-343 (352)
17 3pko_A Geranylgeranyl pyrophos 100.0 9.4E-55 3.2E-59 382.2 22.4 234 1-247 99-334 (334)
18 3aqb_B Component B of hexapren 100.0 5.4E-55 1.8E-59 383.2 19.2 233 1-247 87-325 (325)
19 3apz_A Geranyl diphosphate syn 100.0 6.6E-54 2.3E-58 379.6 23.7 231 1-247 110-348 (348)
20 2her_A Fragment, farnesyl pyro 100.0 1.2E-53 4.1E-58 377.7 18.0 231 1-245 118-354 (368)
21 2e8v_A Geranylgeranyl pyrophos 100.0 1.1E-52 3.7E-57 370.3 16.8 238 1-244 83-339 (340)
22 2q80_A Geranylgeranyl pyrophos 100.0 3.7E-51 1.3E-55 354.8 17.1 226 1-247 68-297 (301)
23 1v4e_A Octoprenyl-diphosphate 100.0 3.7E-50 1.3E-54 348.0 18.6 204 1-230 84-289 (299)
24 1rtr_A Geranyltranstransferase 100.0 2.3E-49 7.9E-54 343.3 16.7 202 1-247 87-293 (301)
25 2q58_A Fragment, farnesyl pyro 100.0 1.5E-48 5.2E-53 347.0 19.9 229 1-243 118-352 (368)
26 3ts7_A Geranyltranstransferase 100.0 2.1E-48 7.2E-53 339.1 18.7 200 1-247 95-302 (324)
27 3uca_A Geranyltranstransferase 100.0 2E-48 7E-53 339.2 18.4 201 1-247 119-324 (324)
28 4f62_A Geranyltranstransferase 100.0 2.9E-48 1E-52 337.3 18.8 200 1-247 90-295 (317)
29 3p8l_A Geranyltranstransferase 100.0 1.1E-48 3.9E-53 338.3 16.1 200 1-245 96-302 (302)
30 2h8o_A Geranyltranstransferase 100.0 2.6E-48 8.8E-53 340.5 17.2 200 1-247 130-335 (335)
31 3p8r_A Geranyltranstransferase 100.0 1.7E-48 5.7E-53 337.7 15.6 200 1-247 95-302 (302)
32 3lsn_A Geranyltranstransferase 100.0 3.9E-48 1.3E-52 335.4 16.4 200 1-247 89-296 (304)
33 3m0g_A Farnesyl diphosphate sy 100.0 5.7E-48 2E-52 333.4 15.4 199 1-247 86-289 (297)
34 1rqj_A Geranyltranstransferase 100.0 2.6E-48 9E-53 336.8 13.3 202 1-247 89-299 (299)
35 3lom_A Geranyltranstransferase 100.0 1.1E-47 3.7E-52 333.7 17.1 199 1-246 95-302 (313)
36 3pde_A Farnesyl-diphosphate sy 100.0 6.1E-48 2.1E-52 334.2 14.7 201 1-246 95-299 (309)
37 2ftz_A Geranyltranstransferase 100.0 1E-46 3.5E-51 323.7 17.3 191 1-245 91-284 (284)
38 3ipi_A Geranyltranstransferase 100.0 1.1E-46 3.6E-51 325.2 15.2 198 1-246 85-283 (295)
39 3llw_A Geranyltranstransferase 100.0 1E-45 3.6E-50 321.0 17.0 199 1-246 99-304 (311)
40 3npk_A Geranyltranstransferase 100.0 4.4E-45 1.5E-49 314.3 16.8 196 1-244 85-284 (291)
41 2j1p_A Geranylgeranyl pyrophos 100.0 3.6E-42 1.2E-46 297.3 16.6 191 1-247 97-293 (293)
42 2azj_A Geranylgeranyl pyrophos 100.0 1.3E-41 4.5E-46 292.8 17.4 186 1-246 92-280 (289)
43 4fp4_A Polyprenyl synthetase; 100.0 2.5E-35 8.4E-40 252.0 7.4 134 1-159 91-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 9.3E-32 3.2E-36 229.9 15.3 129 2-139 85-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 6.2E-30 2.1E-34 218.6 17.2 129 1-140 88-223 (273)
46 3acx_A Dehydrosqualene synthas 95.5 0.76 2.6E-05 38.7 15.7 132 59-229 110-242 (293)
47 3vj8_A Squalene synthase; farn 95.4 0.48 1.6E-05 41.0 14.3 141 54-229 115-256 (343)
48 4hd1_A Squalene synthase HPNC; 95.3 0.65 2.2E-05 39.2 14.6 130 60-229 107-237 (294)
49 3kb9_A EPI-isozizaene synthase 93.8 2.9 9.8E-05 36.5 15.7 104 51-171 178-286 (382)
50 3v1v_A 2-MIB synthase, 2-methy 93.3 3.7 0.00013 36.6 15.6 104 51-171 256-364 (433)
51 1ps1_A Pentalenene synthase; a 90.6 7 0.00024 33.0 14.8 105 50-171 134-244 (337)
52 3g4d_A (+)-delta-cadinene synt 90.0 7.1 0.00024 36.0 13.9 104 50-171 366-476 (554)
53 3n0f_A Isoprene synthase; terp 89.0 7.9 0.00027 35.6 13.4 104 52-171 366-474 (555)
54 3m00_A Aristolochene synthase; 86.3 7 0.00024 35.9 11.4 103 51-171 363-471 (550)
55 2ong_A 4S-limonene synthase; m 78.8 39 0.0013 30.9 16.2 105 52-172 357-466 (543)
56 1di1_A Aristolochene synthase; 75.8 32 0.0011 28.2 17.2 84 83-171 152-238 (300)
57 2j5c_A 1,8-cineole synthase; t 75.2 49 0.0017 30.4 12.9 102 52-171 384-492 (569)
58 1n1b_A (+)-bornyl diphosphate 74.9 28 0.00095 31.9 11.2 102 53-172 364-473 (549)
59 3sdr_A Alpha-bisabolene syntha 74.7 20 0.00069 34.6 10.5 103 52-171 627-738 (817)
60 3rmg_A Octaprenyl-diphosphate 73.1 6.6 0.00023 33.7 6.2 52 107-169 57-108 (334)
61 3p5p_A Taxadiene synthase; cla 70.4 77 0.0026 30.3 13.9 104 52-171 568-676 (764)
62 3s9v_A Abietadiene synthase, c 69.7 40 0.0014 32.4 11.2 102 52-171 599-707 (785)
63 3mzv_A Decaprenyl diphosphate 66.5 7.9 0.00027 33.3 5.2 51 105-166 61-111 (341)
64 3bny_A Aristolochene synthase; 66.0 56 0.0019 27.0 16.9 87 83-171 166-252 (320)
65 4fp4_A Polyprenyl synthetase; 64.6 10 0.00036 31.7 5.5 42 115-167 66-107 (285)
66 2azj_A Geranylgeranyl pyrophos 63.6 14 0.00048 30.9 6.1 52 107-169 59-110 (289)
67 3nf2_A Putative polyprenyl syn 62.8 10 0.00036 32.7 5.3 52 105-167 62-113 (352)
68 2q80_A Geranylgeranyl pyrophos 61.0 16 0.00054 30.7 6.0 47 111-168 39-85 (301)
69 4dhd_A Polyprenyl synthetase; 59.7 8.9 0.0003 33.2 4.3 49 108-167 56-104 (358)
70 1wy0_A Geranylgeranyl pyrophos 58.1 11 0.00038 32.2 4.7 50 108-168 57-106 (342)
71 1wmw_A Geranylgeranyl diphosph 57.8 15 0.00053 31.2 5.5 51 105-166 47-97 (330)
72 1v4e_A Octoprenyl-diphosphate 57.6 17 0.00059 30.5 5.7 50 109-169 52-102 (299)
73 3lmd_A Geranylgeranyl pyrophos 54.3 14 0.00047 32.0 4.6 51 107-168 84-135 (360)
74 3p8l_A Geranyltranstransferase 53.4 21 0.0007 30.1 5.4 50 108-168 61-113 (302)
75 3pko_A Geranylgeranyl pyrophos 53.4 20 0.00068 30.6 5.4 49 108-167 66-115 (334)
76 3ipi_A Geranyltranstransferase 53.4 8.8 0.0003 32.3 3.1 30 113-142 58-87 (295)
77 2e8v_A Geranylgeranyl pyrophos 53.4 21 0.00071 30.6 5.5 46 111-167 54-99 (340)
78 3aqb_B Component B of hexapren 53.3 15 0.0005 31.3 4.5 50 106-166 53-102 (325)
79 3uca_A Geranyltranstransferase 52.5 20 0.00068 30.5 5.2 51 106-167 83-135 (324)
80 3m0g_A Farnesyl diphosphate sy 52.2 22 0.00076 29.8 5.4 51 106-167 50-102 (297)
81 3lom_A Geranyltranstransferase 52.0 22 0.00077 30.0 5.5 49 107-166 60-110 (313)
82 3pde_A Farnesyl-diphosphate sy 51.6 23 0.00078 30.0 5.4 50 108-168 59-112 (309)
83 2ftz_A Geranyltranstransferase 51.3 29 0.00098 28.9 6.0 50 108-168 57-108 (284)
84 3aqb_A Component A of hexapren 50.9 18 0.0006 26.8 3.9 42 22-70 73-114 (147)
85 3oyr_A Trans-isoprenyl diphosp 50.8 14 0.00048 31.8 4.0 37 105-141 73-109 (345)
86 3p8r_A Geranyltranstransferase 49.8 19 0.00064 30.3 4.6 51 106-167 59-111 (302)
87 3lsn_A Geranyltranstransferase 49.5 20 0.0007 30.2 4.8 50 107-167 54-105 (304)
88 1rqj_A Geranyltranstransferase 49.1 34 0.0012 28.6 6.1 52 106-168 53-106 (299)
89 4f62_A Geranyltranstransferase 48.2 26 0.0009 29.7 5.3 49 108-167 56-106 (317)
90 1rtr_A Geranyltranstransferase 48.1 28 0.00097 29.2 5.5 50 107-167 52-103 (301)
91 2j1p_A Geranylgeranyl pyrophos 46.9 39 0.0013 28.2 6.1 49 108-167 63-113 (293)
92 3lk5_A Geranylgeranyl pyrophos 44.6 26 0.0009 30.5 4.9 41 116-167 87-127 (380)
93 3ts7_A Geranyltranstransferase 43.9 25 0.00085 29.9 4.5 49 108-167 61-111 (324)
94 3llw_A Geranyltranstransferase 43.7 27 0.00092 29.5 4.7 39 117-166 74-114 (311)
95 2h8o_A Geranyltranstransferase 41.9 39 0.0013 28.8 5.4 50 107-167 95-146 (335)
96 1v54_K IHQ, cytochrome C oxida 38.3 22 0.00074 21.7 2.3 24 7-30 3-26 (56)
97 3npk_A Geranyltranstransferase 36.8 43 0.0015 28.0 4.8 41 116-167 59-101 (291)
98 3kra_B Geranyl diphosphate syn 36.4 38 0.0013 28.0 4.4 51 87-140 33-83 (274)
99 2her_A Fragment, farnesyl pyro 35.5 33 0.0011 29.7 4.0 42 117-169 95-136 (368)
100 2ihi_A Pyrophosphate synthase; 34.5 48 0.0016 29.0 4.9 32 121-163 109-140 (395)
101 1s2x_A CAG-Z; CAG pathogenicit 33.9 21 0.00071 26.3 2.0 11 126-136 149-159 (206)
102 3qkc_B Geranyl diphosphate syn 31.6 53 0.0018 27.0 4.5 53 87-142 38-90 (273)
103 2qis_A Farnesyl pyrophosphate 27.5 72 0.0025 27.6 4.8 20 122-141 109-128 (374)
104 2q58_A Fragment, farnesyl pyro 26.4 23 0.00079 30.6 1.4 8 192-199 290-297 (368)
105 1uby_A FPS, farnesyl diphospha 26.0 80 0.0027 27.2 4.8 22 121-142 101-122 (367)
106 2y69_K Cytochrome C oxidase po 24.0 49 0.0017 21.8 2.3 22 9-30 29-50 (80)
107 3tc1_A Octaprenyl pyrophosphat 23.6 63 0.0022 27.2 3.6 35 121-166 61-95 (315)
108 3dyh_A Farnesyl pyrophosphate 22.4 94 0.0032 27.0 4.6 28 126-164 115-142 (390)
109 3fgx_A Rbstp2171; structural g 20.1 2.4E+02 0.0082 20.0 5.7 62 82-146 44-106 (114)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=5.3e-57 Score=397.29 Aligned_cols=233 Identities=20% Similarity=0.287 Sum_probs=190.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ...++++++++++..++.||.+|+.+..+..
T Consensus 108 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 178 (345)
T 3oyr_A 108 VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFAR--AFELMVET-----NSMKALEILARASRVIAEGEVLQLMRSHDLN-- 178 (345)
T ss_dssp C---------CCCSCCTTHHHHHHHHHHHHHH--HHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHHHHTSSCSS--
T ss_pred cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHH--HHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 79999999999999999998 89999999965 78888864 2368899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+||++
T Consensus 179 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~e 254 (345)
T 3oyr_A 179 ---LSQAVYLEIIQAKTAEL-FAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFRE 254 (345)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ---CCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhc
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++..++++++.+.++++++ +++++++++++++++|+++++++.++++.++|++.|+.+|+++.++.|.
T Consensus 255 gK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~ 334 (345)
T 3oyr_A 255 GKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALE 334 (345)
T ss_dssp --CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHH
T ss_pred CchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999988999999998865 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 025823 237 SFLAKIYKRQ 246 (247)
Q Consensus 237 ~l~~~~~~R~ 246 (247)
.|++++++|.
T Consensus 335 ~la~~~~~R~ 344 (345)
T 3oyr_A 335 ELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.5e-56 Score=394.30 Aligned_cols=234 Identities=20% Similarity=0.248 Sum_probs=204.6
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ...++++++++++..++.||.+|+.+..+..
T Consensus 96 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 166 (341)
T 3mzv_A 96 VDESRQRRGRPTANLLWDNKSSVLVGDYLFAR--SFQLMTDT-----GNMRVMEILANASAVIAEGEVLQLTAAQNLA-- 166 (341)
T ss_dssp ------CTTSCCHHHHSCHHHHHHHHHHHHHH--HHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT--
T ss_pred cCCCCCcCCCccHHHhcChHHHHHHHHHHHHH--HHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 79999999999999999998 89999999965 78888864 1367899999999999999999999876533
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |++||++|++++|++++..+.++.||.++|+||||+||++|++|+++.+|| .|+||++
T Consensus 167 ---~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 242 (341)
T 3mzv_A 167 ---TTEDIYLRVIRGKTAAL-FSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRE 242 (341)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHT
T ss_pred ---CCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCccccc
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++..++++++.|.+++++. +++++++++++++++|++++++..++++.++|++.|+.+|+++.++.|.
T Consensus 243 gK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~ 322 (341)
T 3mzv_A 243 RKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLD 322 (341)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred CchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999764 5778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 025823 237 SFLAKIYKRQK 247 (247)
Q Consensus 237 ~l~~~~~~R~~ 247 (247)
.|++++++|..
T Consensus 323 ~la~~~~~r~~ 333 (341)
T 3mzv_A 323 DLADYVVERVR 333 (341)
T ss_dssp HHHHHHTGGGC
T ss_pred HHHHHHHhccc
Confidence 99999999963
No 3
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.6e-56 Score=397.99 Aligned_cols=247 Identities=50% Similarity=0.886 Sum_probs=227.1
Q ss_pred CCCCCCccCchhhccccchhHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDL 80 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~ 80 (247)
||+|++|||+||||++||++.+++||++++.+.+|.++++.+.+.+...++++++++++..++.||.+|+.+......|+
T Consensus 120 mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~ 199 (367)
T 1uby_A 120 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDL 199 (367)
T ss_dssp HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCC
T ss_pred cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 79999999999999999987468899998887789999876544445678999999999999999999999876433333
Q ss_pred CCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhC
Q 025823 81 SKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDY 159 (247)
Q Consensus 81 ~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~g 159 (247)
..+++++|++|+.+|||+|||.+||.+|++++| ++++..+.++.||.++|+||||+||++|++|+++.+||.|+||++|
T Consensus 200 ~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~eg 279 (367)
T 1uby_A 200 SHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDN 279 (367)
T ss_dssp TTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSC
T ss_pred ccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcC
Confidence 347999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 025823 160 KCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239 (247)
Q Consensus 160 k~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l~ 239 (247)
|+|||++++++.+++++++.|.+++++.+++++++++++++++|+.++++.+++++.++|++.|+.+|+++.++.|..|+
T Consensus 280 K~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~ 359 (367)
T 1uby_A 280 KCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 359 (367)
T ss_dssp CCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHH
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999998877888999999999999999999999999999999999999888999999999
Q ss_pred HHHHhccC
Q 025823 240 AKIYKRQK 247 (247)
Q Consensus 240 ~~~~~R~~ 247 (247)
+++++|+|
T Consensus 360 ~~i~~R~~ 367 (367)
T 1uby_A 360 QKIYKRQK 367 (367)
T ss_dssp HHHCCCCC
T ss_pred HHHHhCcC
Confidence 99999986
No 4
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=6.7e-57 Score=402.83 Aligned_cols=247 Identities=41% Similarity=0.714 Sum_probs=224.5
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccc-----
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTI----- 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~----- 74 (247)
||+|++|||+||||+.||++ +|++||++++.+++|+++++.+.+.+...++++++++++..++.||++|+.+..
T Consensus 129 mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~ 208 (390)
T 3dyh_A 129 MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKL 208 (390)
T ss_dssp HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGC
T ss_pred cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 79999999999999999998 899999999888888988875443344568999999999999999999998831
Q ss_pred ------cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHH-HHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 025823 75 ------EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSPE 147 (247)
Q Consensus 75 ------~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~-~~~l~~~g~~lG~afQi~DD~ld~~~~~~ 147 (247)
....|+..+++++|++|+.+|||+|||.+||++|++++|++++. .+.++.||.++|+||||+||++|++||++
T Consensus 209 d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 288 (390)
T 3dyh_A 209 DPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPE 288 (390)
T ss_dssp CTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred ccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 11112234799999999999999998999999999999998875 78999999999999999999999999999
Q ss_pred ccCCccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCC
Q 025823 148 VIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHP 227 (247)
Q Consensus 148 ~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp 227 (247)
.+||+|+|+++||+|||++++++.+++++++.|.+++++.+++++++++++++++|++++++++++++.++|.+.|+.+|
T Consensus 289 ~~GK~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~ 368 (390)
T 3dyh_A 289 RLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLR 368 (390)
T ss_dssp HHSSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ChHH--HHHHHHHHHHHHhccC
Q 025823 228 TKEV--QAVLKSFLAKIYKRQK 247 (247)
Q Consensus 228 ~~~~--~~~L~~l~~~~~~R~~ 247 (247)
.+++ ++.|..|++++++|+|
T Consensus 369 ~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 369 LCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHCHHHHHHHHHHHHTTTTCCC
T ss_pred CCchHHHHHHHHHHHHHHcCCC
Confidence 8774 8999999999999986
No 5
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-56 Score=395.88 Aligned_cols=239 Identities=22% Similarity=0.247 Sum_probs=220.1
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++...+.+...++++++++++..++.||.+|+.+..+..
T Consensus 89 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 164 (342)
T 1wy0_A 89 MDMDETRRGKPTVHRIWGVNMAILAGDLLFSK--AFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKST-- 164 (342)
T ss_dssp HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHH--HHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC--
T ss_pred ccCCCCCCCCCccccccChhHHHHHHHHHHHH--HHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--
Confidence 69999999999999999998 89999999964 78999875333334568999999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||.+|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| +|+||++
T Consensus 165 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~e 240 (342)
T 1wy0_A 165 ---VTIEEYMEMISGKTGAL-FEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRK 240 (342)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHH
T ss_pred ---CCHHHHHHHHHHhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhC
Confidence 59999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCC-------------hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVD-------------PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 225 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~-------------~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~ 225 (247)
||+|||++++++..++++++.|.+++++.+ ++++++++++++++|++++++++++++.++|++.|+.
T Consensus 241 gK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~ 320 (342)
T 1wy0_A 241 GKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRI 320 (342)
T ss_dssp TCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998753 6789999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhccC
Q 025823 226 HPTKEVQAVLKSFLAKIYKRQK 247 (247)
Q Consensus 226 lp~~~~~~~L~~l~~~~~~R~~ 247 (247)
+|+++.++.|..|++++++|.+
T Consensus 321 l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 321 LPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp SCCCHHHHHHHHHHHHTTTCC-
T ss_pred CCCcHHHHHHHHHHHHHHhccC
Confidence 9998899999999999999974
No 6
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-56 Score=391.35 Aligned_cols=233 Identities=20% Similarity=0.220 Sum_probs=201.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ...++++++++++..++.||.+|+.+..+..
T Consensus 90 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~-- 160 (334)
T 3rmg_A 90 VDESTERRGQLSVNAIFNNKVSVLAGDYLLAT--SLVHAEQT-----NNYEIIRLVSSLGQKLAEGELLQLSNVSNHS-- 160 (334)
T ss_dssp HC---------CHHHHHHHHHHHHHHHHHHHH--HHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHHCCCC----
T ss_pred cCCCCCcCCCccHHHhcChHHHHHHHHHHHHH--HHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 79999999999999999998 89999999965 67888753 1367899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||++|++++|++++..+.++.||.++|+||||+||++|++ +++.+|| .|+||++
T Consensus 161 ---~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~e 235 (334)
T 3rmg_A 161 ---FSEEVYFDVIRKKTAAL-FAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLE 235 (334)
T ss_dssp ---CCHHHHHHHHHHTHHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHT
T ss_pred ---CCHHHHHHHHcCChHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhc
Confidence 69999999999999999 9999999999999999999999999999999999999999999 5889999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++.+++++++.|.+++++. +++++++++++++++|++++++..++++.++|++.|+.+|+++.++.|.
T Consensus 236 gK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~ 315 (334)
T 3rmg_A 236 GKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALR 315 (334)
T ss_dssp TCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred CchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999998888888998887643 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 025823 237 SFLAKIYKRQK 247 (247)
Q Consensus 237 ~l~~~~~~R~~ 247 (247)
.|++++++|.+
T Consensus 316 ~l~~~~~~R~~ 326 (334)
T 3rmg_A 316 TYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHHhccc
Confidence 99999999964
No 7
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=4.7e-56 Score=395.28 Aligned_cols=245 Identities=39% Similarity=0.648 Sum_probs=222.0
Q ss_pred CCCCCCccCchhhccccchh---HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhccc----
Q 025823 1 MDGSHTRRGQPCWFRVPKVG---MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITT---- 73 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~---ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~---- 73 (247)
||+|++|||+||+|++||++ +|++||++++ .+|+++++...+.+...++++++++++..++.||.+|+.+.
T Consensus 101 ~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~--~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~ 178 (362)
T 1yhl_A 101 MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKS--WTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSN 178 (362)
T ss_dssp HHTCCEETTEECGGGSTTTHHHHHHHHHHHHHH--HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGG
T ss_pred cCCCCCCCCCccHHhccCccHhHHHHHHHHHHH--HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 69999999999999999993 6888888875 57888887644334567899999999999999999999987
Q ss_pred -------ccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 025823 74 -------IEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 145 (247)
Q Consensus 74 -------~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 145 (247)
.....|+..+++++|++|+.+|||+|||.+||++|++++| ++++..+.++.||.++|+||||+||++|++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d 258 (362)
T 1yhl_A 179 KLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTP 258 (362)
T ss_dssp GCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2112222236999999999999999999999999999999 88888999999999999999999999999999
Q ss_pred CCccCCccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 025823 146 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 225 (247)
Q Consensus 146 ~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~ 225 (247)
++.+||.|+||++||+|||++++++.+++++++.|.+++++.+++++++++++++++|++++++++++++.++|++.|+.
T Consensus 259 ~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~ 338 (362)
T 1yhl_A 259 PEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQ 338 (362)
T ss_dssp HHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999889999999987778899999999999999999999999999999999999
Q ss_pred CCChHHH--HHHHHHHHHHHhccC
Q 025823 226 HPTKEVQ--AVLKSFLAKIYKRQK 247 (247)
Q Consensus 226 lp~~~~~--~~L~~l~~~~~~R~~ 247 (247)
+|+++.+ +.|..|++++++|+|
T Consensus 339 lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 339 LKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCchhHHHHHHHHHHHHHhccC
Confidence 9998888 999999999999986
No 8
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.2e-55 Score=384.61 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=195.1
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. . .++++++++++..++.||.+|+.+..+..
T Consensus 80 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 149 (315)
T 3tc1_A 80 IDKATMRRKLPSINALFGNFNAVMLGDVFYSK--AFFELSKM-----G-ELIAQALSNAVLRLSRGEIEDVFVGECFN-- 149 (315)
T ss_dssp C----------------CCSHHHHHHHHHHHH--HHHHHTTS-----C-HHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred CCCCCCcCCCccHHHHhCchHHHHHHHHHHHH--HHHHHHHC-----c-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 79999999999999999998 89999999964 78888764 1 57899999999999999999999876532
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||++|++++|++ .+.++.||.++|+||||+||++|++|+++.+|| .|+|+++
T Consensus 150 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 222 (315)
T 3tc1_A 150 ---SDKQKYWRILEDKTAHF-IEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222 (315)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGG
T ss_pred ---CCHHHHHHHHhcchHHH-HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHc
Confidence 69999999999999999 999999999999988 678999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSF 238 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l 238 (247)
||+|||++++++.+++++++.|.+++++++++++++++++++++|++++++..++++.++|++.|+.+|+++.++.|..|
T Consensus 223 gK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l 302 (315)
T 3tc1_A 223 GKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDV 302 (315)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999999999887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 025823 239 LAKIY 243 (247)
Q Consensus 239 ~~~~~ 243 (247)
+++++
T Consensus 303 ~~~~~ 307 (315)
T 3tc1_A 303 ISRTF 307 (315)
T ss_dssp HCC--
T ss_pred HHHHH
Confidence 98875
No 9
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.1e-55 Score=396.64 Aligned_cols=245 Identities=34% Similarity=0.623 Sum_probs=212.6
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccC---
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEG--- 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~--- 76 (247)
||+|++|||+||+|++||++ +|++||++++.+.+|.++.....+.+...++++++++++..++.||.+|+.+....
T Consensus 128 mD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~ 207 (395)
T 3mav_A 128 MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSD 207 (395)
T ss_dssp HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHC
T ss_pred hcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 79999999999999999998 89999999988888888887655555678899999999999999999999765431
Q ss_pred ----------------CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHHHhh
Q 025823 77 ----------------EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGEN--LDKHVEVKDILVQMGIYFQVQDD 138 (247)
Q Consensus 77 ----------------~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~--~~~~~~l~~~g~~lG~afQi~DD 138 (247)
..+...+|+++|++|+.+|||+|+|.+||.+|++++|++ ++..+.++.||.++|+||||+||
T Consensus 208 ~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DD 287 (395)
T 3mav_A 208 AHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDD 287 (395)
T ss_dssp C-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234699999999999999999999999999999874 44678999999999999999999
Q ss_pred hhhccCCCCccCCccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 025823 139 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 218 (247)
Q Consensus 139 ~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~ 218 (247)
++|++||++.+||+|+||++||+|||+++|++.++++++..|.++++++++++++.++++++++|+.++++++++++.++
T Consensus 288 iLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~ 367 (395)
T 3mav_A 288 YLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAK 367 (395)
T ss_dssp HHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhc
Q 025823 219 LTKSIEAHPTKEVQAVLKSFLAKIYKR 245 (247)
Q Consensus 219 A~~~l~~lp~~~~~~~L~~l~~~~~~R 245 (247)
|.+.|+.+|.+..+..|..+++.+++|
T Consensus 368 a~~~l~~l~~~~l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 368 ILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence 999999999988899999999888775
No 10
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=6.5e-56 Score=394.95 Aligned_cols=245 Identities=46% Similarity=0.825 Sum_probs=218.0
Q ss_pred CCCCCCccCchhhccccchh--HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG--MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK 78 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~--ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~ 78 (247)
||+|++|||+||+|++||++ +|+.||+++ +.+|.++++.+...+...++++++++++..++.||.+|+.+......
T Consensus 127 mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~ 204 (374)
T 2qis_A 127 MDSSLTRRGQICWYQKPGVGLDAINDANLLE--ACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNV 204 (374)
T ss_dssp HTTCCEETTEECGGGSTTTGGGHHHHHHHHH--HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred cCCCCCCCCCccHHHhcCchHHHHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 79999999999999999986 355555555 56788888764443456789999999999999999999998764322
Q ss_pred cCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHh
Q 025823 79 DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIE 157 (247)
Q Consensus 79 d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~ 157 (247)
|+..+++++|++|+.+|||+|||.+||.+|++++| ++++..+.++.||.++|+||||+||++|++|+++.+||+|+|++
T Consensus 205 d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~ 284 (374)
T 2qis_A 205 DLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQ 284 (374)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTT
T ss_pred ccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCCchhHHH
Confidence 22236999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 025823 158 DYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKS 237 (247)
Q Consensus 158 ~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~ 237 (247)
+||+|||++++++.+++++++.|.+++++.+++++++++++++++|+.++++.+++++.++|++.|+.+|+++.++.|..
T Consensus 285 ~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~~ 364 (374)
T 2qis_A 285 DNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLG 364 (374)
T ss_dssp TTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred cCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999999987778899999999999999999999999999999999999999889999999
Q ss_pred HHHHHHhccC
Q 025823 238 FLAKIYKRQK 247 (247)
Q Consensus 238 l~~~~~~R~~ 247 (247)
|++++++|+|
T Consensus 365 l~~~i~~R~k 374 (374)
T 2qis_A 365 LARKIYKRRK 374 (374)
T ss_dssp HHHHHC----
T ss_pred HHHHHHcCcC
Confidence 9999999976
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-55 Score=387.44 Aligned_cols=237 Identities=24% Similarity=0.250 Sum_probs=214.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcc-ccc-CC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT-TIE-GE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~-~~~-~~ 77 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++.........++++++++++..++.||.+|+.+ ..+ ..
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~ 159 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMPLALNAGDAMHAE--MWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFD 159 (330)
T ss_dssp HHTCCEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred ccCCCCCCCCCccccccCchHHHHHHHHHHHH--HHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 69999999999999999998 89999999964 788888642111112589999999999999999999998 655 22
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchH
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDI 156 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl 156 (247)
+++++|++|+.+|||+|||.+||++|++++|++++.. +++||.++|+||||+||++|++|+++ +|| .|+||
T Consensus 160 -----~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl 231 (330)
T 1wmw_A 160 -----LRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDL 231 (330)
T ss_dssp -----CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHH
T ss_pred -----CCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchh
Confidence 6999999999999999999999999999999988776 99999999999999999999999999 999 99999
Q ss_pred hhCcccHHHHHHHhhcCHHHHHHHHHhhCCC--C--hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh----cCCC
Q 025823 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKV--D--PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE----AHPT 228 (247)
Q Consensus 157 ~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~--~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~----~lp~ 228 (247)
++||+|||++++++..++++++.|..+++++ + +++++++++++.++|+++++++.+++|.++|++.|+ .+|+
T Consensus 232 ~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~ 311 (330)
T 1wmw_A 232 YEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPG 311 (330)
T ss_dssp HHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSC
T ss_pred hCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999998999999999854 2 678999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 025823 229 KEVQAVLKSFLAKIYKRQK 247 (247)
Q Consensus 229 ~~~~~~L~~l~~~~~~R~~ 247 (247)
++.++.|..|++++++|.+
T Consensus 312 ~~~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 312 KEALDHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHhccC
Confidence 9999999999999999974
No 12
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.1e-55 Score=388.51 Aligned_cols=230 Identities=21% Similarity=0.206 Sum_probs=196.7
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. .+++++++++++..++.||.+|+.+..+.
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~------~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~--- 186 (360)
T 3lmd_A 118 MDEASMRRGVPSANARWDNSVAILAGDILLAH--ASGLMSQL------GTDTVAHFAETFGELVTGQMRETVGPRDT--- 186 (360)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHH--HHHHHHHH------CHHHHHHHHHHHHHHHHHHHHHHHCCTTS---
T ss_pred cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHH--HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHhccCCC---
Confidence 79999999999999999998 89999999965 68888864 13789999999999999999999987653
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++
T Consensus 187 ---~t~~~y~~~i~~KTg~L-~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~e 262 (360)
T 3lmd_A 187 ---DPIEHYTNVIREKTGVL-IASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLRE 262 (360)
T ss_dssp ---CHHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHH
T ss_pred ---CCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhc
Confidence 59999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++..++ +++.|.++++++ +++++++++++++++|+++++++.++++.++|++.|+.||+++.++.|.
T Consensus 263 gK~Tlp~l~al~~~~~-~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~ 341 (360)
T 3lmd_A 263 GVFTLPVLYALREDTP-VGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALR 341 (360)
T ss_dssp TCCCHHHHHHHHCCSH-HHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHH
T ss_pred CCchHHHHHHHHcCCc-hHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999998554 678899998765 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 025823 237 SFLAKIYKRQ 246 (247)
Q Consensus 237 ~l~~~~~~R~ 246 (247)
.|++++++|.
T Consensus 342 ~La~~~~~R~ 351 (360)
T 3lmd_A 342 NLATFTVKRV 351 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 13
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=5.8e-55 Score=390.34 Aligned_cols=246 Identities=35% Similarity=0.649 Sum_probs=201.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhh-ccc-----
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDL-ITT----- 73 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~-~~~----- 73 (247)
||+|++|||+||||+.||++ ++++||++++.+.+|.++++.+.+.+...++++++++++..++.||.+|+ .|.
T Consensus 128 mD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~ 207 (395)
T 2ihi_A 128 MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSD 207 (395)
T ss_dssp HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHC
T ss_pred ccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccc
Confidence 79999999999999999987 33555554444668899987644444568899999999999999999999 331
Q ss_pred ------------c-cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHhh
Q 025823 74 ------------I-EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK--HVEVKDILVQMGIYFQVQDD 138 (247)
Q Consensus 74 ------------~-~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~--~~~l~~~g~~lG~afQi~DD 138 (247)
. ....|++.+++++|++|+.+|||+|||.+||.+|++++|++++. .+.++.||.++|+||||+||
T Consensus 208 ~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD 287 (395)
T 2ihi_A 208 AHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDD 287 (395)
T ss_dssp SSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112224799999999999999999999999999999999888 89999999999999999999
Q ss_pred hhhccCCCCccCCccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 025823 139 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 218 (247)
Q Consensus 139 ~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~ 218 (247)
++|++|+++.+||.|+|+++||+|||++++++.+++++++.|.+++++++++++++++++++++|++++++++++++.++
T Consensus 288 ~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~ 367 (395)
T 2ihi_A 288 YLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAK 367 (395)
T ss_dssp HHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred HHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcc
Q 025823 219 LTKSIEAHPTKEVQAVLKSFLAKIYKRQ 246 (247)
Q Consensus 219 A~~~l~~lp~~~~~~~L~~l~~~~~~R~ 246 (247)
|++.|+.+|+++.++.|..|++++++|.
T Consensus 368 A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 368 ILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999984
No 14
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=5.9e-55 Score=386.54 Aligned_cols=237 Identities=20% Similarity=0.247 Sum_probs=207.7
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCc-
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK- 78 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~- 78 (247)
||+|++|||+||+|++||++ ||++||++++. +|+++... +...++++++++++..++.||.+|+.+......
T Consensus 88 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~----~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~d 161 (358)
T 4dhd_A 88 IDRGDVRRGLPTVRKAFGDNAAILVGIWYREA--IEEAVLDT----PKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSD 161 (358)
T ss_dssp HTTCCEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCC
T ss_pred ccCCCCcCCCccHHHhcCHHHHHHHHHHHHHH--HHHHHhCC----ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 79999999999999999998 89999999965 68888532 235789999999999999999999998721100
Q ss_pred ------cCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-
Q 025823 79 ------DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK- 151 (247)
Q Consensus 79 ------d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK- 151 (247)
+...+|+++|++|+.+|||+| |++||++|++++|++++..+.++.||.++|+||||+||++|++|+++.+||
T Consensus 162 p~~~~~~~~~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~ 240 (358)
T 4dhd_A 162 PYFVQARWREVTLDDYIKMVSLKTGAL-IAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKE 240 (358)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C
T ss_pred ccccccCCCCCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCC
Confidence 000269999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhhCcc-cHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC
Q 025823 152 VGTDIEDYKC-SWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT 228 (247)
Q Consensus 152 ~~~Dl~~gk~-Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~ 228 (247)
.|+||++||+ |||++++++.+++++++.|.++++++ +++++++++++++++|+++++++.++++.++|++.|+.+|+
T Consensus 241 ~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~ 320 (358)
T 4dhd_A 241 IGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPN 320 (358)
T ss_dssp TTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred chhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999 99999999999999999999998765 57889999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 025823 229 KEVQAVLKSFLAKIYKRQK 247 (247)
Q Consensus 229 ~~~~~~L~~l~~~~~~R~~ 247 (247)
++ .|..|++++++|.+
T Consensus 321 ~~---~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 321 NG---TLKELLDFIVAREY 336 (358)
T ss_dssp CH---HHHHHHHHHTTTTT
T ss_pred CH---HHHHHHHHHHhccc
Confidence 66 89999999999974
No 15
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=6.4e-55 Score=388.57 Aligned_cols=239 Identities=25% Similarity=0.342 Sum_probs=202.7
Q ss_pred CCCCCCccCchhhccc----------------cchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHh
Q 025823 1 MDGSHTRRGQPCWFRV----------------PKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTA 63 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~----------------~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (247)
||+|++|||+||+|++ ||++ +|++||++++. +|+++++...+.+...++.++++.+...++
T Consensus 111 mD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~--A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (380)
T 3lk5_A 111 IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVW--AEDMLQDSGLSAEALARTRDAWRGMRTEVI 188 (380)
T ss_dssp HTC-----------------------------CHHHHHHHHHHHHHHH--HHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999997 5987 89999999964 788888743222234577888999889999
Q ss_pred hHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025823 64 SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCF 143 (247)
Q Consensus 64 ~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~ 143 (247)
.||++|+.+..+.. +++++|++|+.+|||+|||++||++|++++|++++.++.++.||.++|+||||+||++|++
T Consensus 189 ~GQ~lDl~~~~~~~-----~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~ 263 (380)
T 3lk5_A 189 GGQLLDIYLESHAN-----ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVF 263 (380)
T ss_dssp HHHHHHHHHHHTTC-----CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-----CCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999877543 5999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCccCC-ccchHhhCcccHHHHHHHhhc---CHHHHHHHHHhhCCC-ChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 025823 144 GSPEVIGK-VGTDIEDYKCSWLVVKALELC---NEEQKKLVHENYGKV-DPACVAKVKELYKTLDLEGAFVEYEKESYEK 218 (247)
Q Consensus 144 ~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~---~~~~~~~l~~~~~~~-~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~ 218 (247)
|+++.+|| .|+||++||+|||++++++.+ +|++++.|.++++.. +++++++++++++++|+++++++.+++|.++
T Consensus 264 gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~ 343 (380)
T 3lk5_A 264 GDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTES 343 (380)
T ss_dssp SCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999987 356788999998754 6788999999999999999999999999999
Q ss_pred HHHHhhcCC-ChHHHHHHHHHHHHHHhcc
Q 025823 219 LTKSIEAHP-TKEVQAVLKSFLAKIYKRQ 246 (247)
Q Consensus 219 A~~~l~~lp-~~~~~~~L~~l~~~~~~R~ 246 (247)
|++.|+.+| +++.++.|..|++++..|.
T Consensus 344 A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 344 GLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 999999999 5789999999999999874
No 16
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=4.8e-55 Score=386.06 Aligned_cols=235 Identities=17% Similarity=0.158 Sum_probs=211.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++.. .+...++++++++++..++.||++|+.+..+..
T Consensus 97 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~~--~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~~~~-- 170 (352)
T 3nf2_A 97 MDGDEQRRHRDTVWKVHGPAQAILVGDALFAL--ANEVLLELG--TVEAGRATRRLTKASRSLIDGQAQDISYEHRDR-- 170 (352)
T ss_dssp HHTCCEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC--
T ss_pred CCCCCCCCCCccHHHhcChHHHHHHHHHHHHH--HHHHHHhCC--CchHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--
Confidence 69999999999999999998 89999999964 788888752 222347899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+|+++|++|+.+|||+| |.+||++|++++|++++..+.++.||.++|+||||+||++|++|+++.+|| .|+||++
T Consensus 171 ---~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~e 246 (352)
T 3nf2_A 171 ---VSVEECLEMEGNKTGAL-LACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQ 246 (352)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHT
T ss_pred ---CCHHHHHHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCccccc
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCC---------CChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGK---------VDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT- 228 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~---------~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~- 228 (247)
||+|||++++++..+++ +..|.+++++ .+++++++++++++++|++++++++++++.++|++.|+.+|+
T Consensus 247 gK~Tlpvi~al~~~~~~-~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~ 325 (352)
T 3nf2_A 247 RKKSLPVVAALAAGGAA-SERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMP 325 (352)
T ss_dssp TCCCHHHHHHHHHCSHH-HHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCccHHHHHHHHhCChH-HHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999998764 4456666642 357889999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 025823 229 KEVQAVLKSFLAKIYKRQ 246 (247)
Q Consensus 229 ~~~~~~L~~l~~~~~~R~ 246 (247)
++.++.|..|++++++|.
T Consensus 326 ~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 326 DRVRDRFTALADFVVVRK 343 (352)
T ss_dssp HHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 889999999999999985
No 17
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=9.4e-55 Score=382.17 Aligned_cols=234 Identities=20% Similarity=0.187 Sum_probs=209.8
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++... ..++++.+++++..++.||.+|+.+..+..
T Consensus 99 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~~~----~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~-- 170 (334)
T 3pko_A 99 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTV--YFDQVLKSTT----DRSLIQNHIDAMHRILQGELHQMDLNYRED-- 170 (334)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHTTTCTT--
T ss_pred CCCCCCcCCCccHHHHcCchHHHHHHHHHHHH--HHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 69999999999999999998 89999999964 7888887521 256889999999999999999999866432
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+|+++
T Consensus 171 ---~~~~~yl~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~e 246 (334)
T 3pko_A 171 ---ITLDAYLNEIAGKTAEL-FALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 246 (334)
T ss_dssp ---CCHHHHHHHHHHTTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHT
T ss_pred ---CCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCcccc
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSF 238 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l 238 (247)
||+|||++++++..+++.++.+.. -+..+++++++++++++++|++++++++++++.++|++.|+.+|+++.++.|..|
T Consensus 247 gK~Tlp~i~al~~~~~~l~~~l~~-~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l 325 (334)
T 3pko_A 247 GVYSLPLLLSLSHAPRDFHKLLKK-KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQL 325 (334)
T ss_dssp TCCCHHHHHHGGGSHHHHHHHHTT-GGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHH
T ss_pred CchhHHHHHHHHhCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999875443433311 1123678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 025823 239 LAKIYKRQK 247 (247)
Q Consensus 239 ~~~~~~R~~ 247 (247)
++++++|++
T Consensus 326 ~~~~~~R~~ 334 (334)
T 3pko_A 326 TRLLLRRDH 334 (334)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHhccC
Confidence 999999974
No 18
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.4e-55 Score=383.15 Aligned_cols=233 Identities=16% Similarity=0.187 Sum_probs=215.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ...++++++++++..++.||.+|+.+..+..
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 157 (325)
T 3aqb_B 87 IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLAR--ALQNIATI-----NNSKFHQIFSKTILEVCFGEFDQMADRFNYP-- 157 (325)
T ss_dssp HHTCCEETTEECHHHHTCHHHHHHHHHHHHHH--HHHHTTTC-----CCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC--
T ss_pred ccCCCCCCCCCCcccccChHHHHHHHHHHHHH--HHHHHHhC-----ChHHHHHHHHHHHHHHHHHHHHHHHcccCCC--
Confidence 69999999999999999998 89999999964 78888764 2367899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+||++
T Consensus 158 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~ 233 (325)
T 3aqb_B 158 ---VSFTAYLRRINRKTAIL-IEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRN 233 (325)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHT
T ss_pred ---CCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhC
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHH---HhhCCC-ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVH---ENYGKV-DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~---~~~~~~-~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
||+|||++++++.+++++++.|. ++++++ +++++++++++++++ +++++++.++++.++|++.|+.+|+++.++.
T Consensus 234 gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ 312 (325)
T 3aqb_B 234 GHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDY 312 (325)
T ss_dssp TCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999998776677787 888654 367899999999999 9999999999999999999999999899999
Q ss_pred HHHHHHHHHhccC
Q 025823 235 LKSFLAKIYKRQK 247 (247)
Q Consensus 235 L~~l~~~~~~R~~ 247 (247)
|..+++++++|.+
T Consensus 313 L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 313 LEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999975
No 19
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=6.6e-54 Score=379.63 Aligned_cols=231 Identities=21% Similarity=0.235 Sum_probs=194.0
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|.++++. ...++++++++++..++.||.+|+.+..+..
T Consensus 110 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 180 (348)
T 3apz_A 110 LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSR--ACGALAAL-----KNTEVVALLATAVEHLVTGETMEITSSTEQR-- 180 (348)
T ss_dssp ----------------CCHHHHHHHHHHHHHH--HHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHTCCHHHH--
T ss_pred cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHH--HHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 79999999999999999998 89999999965 68888764 1367899999999999999999999875432
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||.+|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| +|+||++
T Consensus 181 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~e 256 (348)
T 3apz_A 181 ---YSMDYYMQKTYYKTASL-ISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRH 256 (348)
T ss_dssp ---TCHHHHHHHHHHHHTHH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHT
T ss_pred ---CCHHHHHHHHHcchHHH-HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhC
Confidence 59999999999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChH------HH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKE------VQ 232 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~------~~ 232 (247)
||+|||++++++.. ++.++.+...++ ++++++++++++.++|++++++++++++.++|++.|+.+|.++ .+
T Consensus 257 gK~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 333 (348)
T 3apz_A 257 GVITAPILFAMEEF-PQLREVVDQVEK--DPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSR 333 (348)
T ss_dssp TCCCHHHHHHHHHC-TTHHHHHHTTTT--CTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHH
T ss_pred CChhHHHHHHHHcC-HHHHHHHHhccC--CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHH
Confidence 99999999999984 455666655444 3678999999999999999999999999999999999999764 79
Q ss_pred HHHHHHHHHHHhccC
Q 025823 233 AVLKSFLAKIYKRQK 247 (247)
Q Consensus 233 ~~L~~l~~~~~~R~~ 247 (247)
+.|..|++++++|.+
T Consensus 334 ~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 334 RALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCcC
Confidence 999999999999975
No 20
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.2e-53 Score=377.72 Aligned_cols=231 Identities=26% Similarity=0.439 Sum_probs=208.6
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHH-HHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccC-C
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLR-NHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEG-E 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~-~ 77 (247)
||+|++|||+||||++||+. ||++||++++. +.+|+++++.+...+ ..++++++++++..++.||.+|+.+.... .
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~ 196 (368)
T 2her_A 118 MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDI-VMKIQKIYNESIFFTVLGQHLDLSYFDLSKA 196 (368)
T ss_dssp HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCCCSSC
T ss_pred ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcCh-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 79999999999999999998 89999999933 235777765432222 46889999999999999999999987643 2
Q ss_pred ccCCCCCH-HHHHHHHHhchhhhhhHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccc
Q 025823 78 KDLSKYSL-PLHRRIVQYKTAYYSFYLPVACALLMAGENLDK--HVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGT 154 (247)
Q Consensus 78 ~d~~~~s~-~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 154 (247)
+ +. ++|++|+.+|||+|||.+||++|++++|++++. .+.++.||.++|+||||+||++|++ .+||+|+
T Consensus 197 ~-----~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK~g~ 267 (368)
T 2her_A 197 D-----KISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDSNAD 267 (368)
T ss_dssp S-----SHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCSSSC
T ss_pred C-----ChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCC
Confidence 2 33 999999999999999999999999999999888 8999999999999999999999999 6899999
Q ss_pred hHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 155 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 155 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
||++||+|||++++++.+++++++.|.+++++++ ++++++++++|++++++++++++.++|++.|+.+|.++.++.
T Consensus 268 Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~----~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~ 343 (368)
T 2her_A 268 DICRFKLTWPLQKSFEIADEEMKLKISENYGKNS----SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKV 343 (368)
T ss_dssp TTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH----HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999999998643 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 025823 235 LKSFLAKIYKR 245 (247)
Q Consensus 235 L~~l~~~~~~R 245 (247)
|..|+++++++
T Consensus 344 L~~l~~~i~~~ 354 (368)
T 2her_A 344 FIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 21
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.1e-52 Score=370.28 Aligned_cols=238 Identities=17% Similarity=0.183 Sum_probs=176.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++.....+...++++++++++..++.||.+|+.+..+..
T Consensus 83 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~-- 158 (340)
T 2e8v_A 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFR--AMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLP-- 158 (340)
T ss_dssp HTTCSEETTEECHHHHTCHHHHHHHHHHHHHH--HHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred ccCCCCCCCCcchhhccCchHHHHHHHHHHHH--HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 79999999999999999998 89999999964 78888875322223345889999999999999999999876430
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
...+++++|++|+.+|||+| |.+||++|++++|+++ ..+.++.||.++|+||||+||++|++|+++.+|| +|+||++
T Consensus 159 ~~~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~e 236 (340)
T 2e8v_A 159 EIIPTQEMYLNMVMNKTGGL-FRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITE 236 (340)
T ss_dssp SCCCCHHHHHHHHHHHTHHH-HHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHT
T ss_pred cCCCCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhc
Confidence 01269999999999999999 9999999999999887 5789999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHH----HHHHHHHhhCCC--ChHhHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHH-----hhcC
Q 025823 159 YKCSWLVVKALELCNEE----QKKLVHENYGKV--DPACVAKVKELYK-TLDLEGAFVEYEKESYEKLTKS-----IEAH 226 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~----~~~~l~~~~~~~--~~~~~~~i~~l~~-~~g~~~~~~~~~~~~~~~A~~~-----l~~l 226 (247)
||+|||++++++.++++ ++..+..++.+. +++...++++++. ++|+++++++.+++|.++|++. |+.+
T Consensus 237 gK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~l 316 (340)
T 2e8v_A 237 GKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDL 316 (340)
T ss_dssp TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC---------
T ss_pred CCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhC
Confidence 99999999999986542 455676666443 2333458999999 9999999999999999999999 9999
Q ss_pred CChH-----HHHHHHHHHHHHHh
Q 025823 227 PTKE-----VQAVLKSFLAKIYK 244 (247)
Q Consensus 227 p~~~-----~~~~L~~l~~~~~~ 244 (247)
|+++ .++.|..|++++.+
T Consensus 317 p~~~~~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 317 ASHSDTATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -----------------------
T ss_pred CCCccccHHHHHHHHHHHHHHHh
Confidence 9888 99999999998865
No 22
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.7e-51 Score=354.82 Aligned_cols=226 Identities=19% Similarity=0.160 Sum_probs=187.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++.+.. .+++++++++++..++.||.+|+.+..+..
T Consensus 68 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~--a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~-- 138 (301)
T 2q80_A 68 EDNSKLRRGFPVAHSIYGIPSVINSANYVYFL--GLEKVLTLD-----HPDAVKLFTRQLLELHQGQGLDIYWRDNYT-- 138 (301)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cCCCCCCCCCcchhhccCcHHHHHHHHHHHHH--HHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 69999999999999999998 89999999964 788887641 135678899999999999999999865431
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
.+++++|++|+.+|||+| |.+||.+|++++|.++ .+++||.++|+||||+||++|++++++.+|| .|+||++
T Consensus 139 --~~~~~~y~~~i~~KTa~L-~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~e 211 (301)
T 2q80_A 139 --CPTEEEYKAMVLQKTGGL-FGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE 211 (301)
T ss_dssp --CCCHHHHHHHHHHHHHHH-HHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHH
T ss_pred --CCCHHHHHHHHHcccHHH-HHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhc
Confidence 269999999999999999 9999999999999874 4899999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCC-ChHhH-HHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKV-DPACV-AKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~-~~~~~-~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++.. ++.+ .+..++.+. .+.++ .+++++++++|+++++++.++++.++|++.|+.+|.++. |.
T Consensus 212 gK~T~p~i~al~~~-~~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~---L~ 286 (301)
T 2q80_A 212 GKFSFPTIHAIWSR-PEST-QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE---LV 286 (301)
T ss_dssp TCCCHHHHHHHHHS-TTCC-HHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HH
T ss_pred CCcHHHHHHHHHcC-ccch-HHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHH---HH
Confidence 99999999999974 3332 344444322 23344 449999999999999999999999999999999998663 89
Q ss_pred HHHHHHHhccC
Q 025823 237 SFLAKIYKRQK 247 (247)
Q Consensus 237 ~l~~~~~~R~~ 247 (247)
.+++++..|.+
T Consensus 287 ~l~~~l~~~~~ 297 (301)
T 2q80_A 287 ALVKHLSKMFK 297 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHhc
Confidence 99999987753
No 23
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=3.7e-50 Score=348.02 Aligned_cols=204 Identities=21% Similarity=0.180 Sum_probs=184.5
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ...++++++++++..++.||.+|+.+..+.
T Consensus 84 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--- 153 (299)
T 1v4e_A 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVS--AFHTVEEI-----GNNKLRRAFLNVIGKMSEAELIEQLSRYKP--- 153 (299)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHTTSC---
T ss_pred CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHH--HHHHHHhC-----ChHHHHHHHHHHHHHHhhhHHHHHHccCCC---
Confidence 69999999999999999998 89999999965 68888875 136789999999999999999999987643
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|| .|+|+++
T Consensus 154 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~e 225 (299)
T 1v4e_A 154 ---ITKEEYLRIVEGKSGAL-FGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKN 225 (299)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTT
T ss_pred ---CCHHHHHHHHHhccHHH-HHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhC
Confidence 59999999999999999 9999999999999877 78999999999999999999999999 99999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKE 230 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~ 230 (247)
||+|||++++++.+++ +.+++.+ +++++++++++++|+++++++.++.|.++|.+.|+.+|+..
T Consensus 226 gK~T~p~l~al~~~~~-----l~~~l~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 226 GVASFPLVTAMEKFPE-----ARQMFEN---RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp TTCCHHHHHHHHHCHH-----HHHHHHT---TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred CCchHHHHHHHHhChH-----HHHHHhH---HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999998755 3334432 46789999999999999999999999999999999998753
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=2.3e-49 Score=343.34 Aligned_cols=202 Identities=20% Similarity=0.298 Sum_probs=168.8
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHHHHHHHHHH--HHHhhHHHhhhcccccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNH-FRDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEG 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~ 76 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ..+++...++++.+++++ ..++.||.+|+.+..+
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~- 163 (301)
T 1rtr_A 87 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTK--AFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ- 163 (301)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-
T ss_pred ccCCCccCCCccHHhhcCHHHHHHHHHHHHHH--HHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC-
Confidence 79999999999999999998 89999999965 78999874 111123567888999988 8899999999998664
Q ss_pred CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccch
Q 025823 77 EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTD 155 (247)
Q Consensus 77 ~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~D 155 (247)
. +++++|++|+.+|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| +|+|
T Consensus 164 ~-----~~~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~D 237 (301)
T 1rtr_A 164 P-----IDLETLEMIHKTKTGAL-LTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSD 237 (301)
T ss_dssp C-----CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred C-----CCHHHHHHHHHhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchH
Confidence 2 69999999999999999 999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 025823 156 IEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVL 235 (247)
Q Consensus 156 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L 235 (247)
+++||+|||++++++ ++++.++++.++|++.|+.+|+++.++.|
T Consensus 238 l~~gK~T~p~l~al~------------------------------------~a~~~a~~~~~~A~~~L~~l~~~~~~~~L 281 (301)
T 1rtr_A 238 LENNKSTYVSLLGKD------------------------------------GAEDKLTYHRDAAVDELTQIDEQFNTKHL 281 (301)
T ss_dssp -----CCHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHTSCTTSCCHHH
T ss_pred HHcCCCcHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999854 44667889999999999999987788999
Q ss_pred HHHHHHHHhccC
Q 025823 236 KSFLAKIYKRQK 247 (247)
Q Consensus 236 ~~l~~~~~~R~~ 247 (247)
..|++++++|.+
T Consensus 282 ~~l~~~i~~R~~ 293 (301)
T 1rtr_A 282 LEIVDLFYSRDH 293 (301)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999999964
No 25
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.5e-48 Score=347.05 Aligned_cols=229 Identities=26% Similarity=0.420 Sum_probs=197.2
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccC--CCchHHHHHHHHHHHHHHHhhHHHhhhcccccCC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFR--DKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~ 77 (247)
||+|++|||+||||++||++ ||++||++++. +|+++.+... +.+...++++++++++..++.||.+|+.+.....
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~ 195 (368)
T 2q58_A 118 MDSGKFRRGAPCWYIVHGQSNAINDIFFLKML--SLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSK 195 (368)
T ss_dssp HTTCCEETTEECHHHHTHHHHHHHHHHHHHHH--HHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSS
T ss_pred ccCCCCCCCCCccccCcchhhHHHHHHHHHHH--HHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Confidence 79999999999999999998 89999999954 6888865321 1122357889999999999999999998865443
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccc
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGT 154 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~ 154 (247)
.+ +++++|++|+.+|||.|+|.+|+.+|++++| ++++..+.++.||.++|+||||+||++|+++ || .|+
T Consensus 196 ~~---~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~ 267 (368)
T 2q58_A 196 AD---KISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNAD 267 (368)
T ss_dssp CS---SHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSC
T ss_pred CC---chHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCc
Confidence 32 5899999999999999989999999999998 5777788999999999999999999999985 88 999
Q ss_pred hHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 155 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 155 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
||++||+|||+++|++.+++++++.|.+.+++. ...+++++...+..+.+.++++++.+++.+.|+.+|++..++.
T Consensus 268 Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~----~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~ 343 (368)
T 2q58_A 268 DICRFKLTWPLQKSFEIADEEMKLKISENYGKN----SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKV 343 (368)
T ss_dssp TTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTC----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCC----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999999999999999999999999863 2456677777888888889999999999999999999888877
Q ss_pred HHHHHHHHH
Q 025823 235 LKSFLAKIY 243 (247)
Q Consensus 235 L~~l~~~~~ 243 (247)
|..+++++.
T Consensus 344 l~~ll~kI~ 352 (368)
T 2q58_A 344 FIHLIHQIS 352 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=2.1e-48 Score=339.13 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=164.8
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhccc-CCC-c-hHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHF-RDK-P-YYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~-~~~-~-~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||++ +|++||+|++. +|+++++.. ... + ...++++.+++++ ..|+.||.+|+.+..
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~--Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~ 172 (324)
T 3ts7_A 95 MDDDDLRRGKPTCHKAYDEATAILAGDGLQAL--AFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVG 172 (324)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred ccCCCccCCCCchhhhcChHHHHHHHHHHHHH--HHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccC
Confidence 79999999999999999998 89999999964 789998752 111 1 2357888888875 789999999999876
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-c
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-V 152 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~ 152 (247)
+ . +++++|++|+.+|||+| |.+||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+|| .
T Consensus 173 ~-~-----~t~~~y~~i~~~KTg~L-~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~ 245 (324)
T 3ts7_A 173 K-K-----LDLPGLENMHIRKTGAL-IRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTR 245 (324)
T ss_dssp C-C-----CCHHHHHHHHHHHTHHH-HHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred C-C-----CCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCc
Confidence 5 2 69999999999999999 9999999999999 99999999999999999999999999999999999999 9
Q ss_pred cchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 025823 153 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQ 232 (247)
Q Consensus 153 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~ 232 (247)
|+|+++||+|||++++ ++++++.++++.++|++.|+.||++ +
T Consensus 246 g~Dl~egK~T~p~l~g------------------------------------le~a~~~a~~~~~~A~~~L~~l~~~--~ 287 (324)
T 3ts7_A 246 GKDRDHNKPNYPALLG------------------------------------LSGAKEKAEEMHEAALESLAGFGPE--A 287 (324)
T ss_dssp -------CCCHHHHHC------------------------------------HHHHHHHHHHHHHHHHHTTTTCCGG--G
T ss_pred cchhhcCCccHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHhCCcc--H
Confidence 9999999999999995 4566677899999999999999975 7
Q ss_pred HHHHHHHHHHHhccC
Q 025823 233 AVLKSFLAKIYKRQK 247 (247)
Q Consensus 233 ~~L~~l~~~~~~R~~ 247 (247)
+.|..|++++++|.+
T Consensus 288 ~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 288 DLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhccC
Confidence 899999999999964
No 27
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2e-48 Score=339.21 Aligned_cols=201 Identities=21% Similarity=0.273 Sum_probs=161.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchH-HHHHHHHHHHH--HHHhhHHHhhhcccccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYY-VDLLDLFNEVE--FQTASGQMIDLITTIEG 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~ 76 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++...+.... .++++.+++++ ..|+.||.+|+.+..+.
T Consensus 119 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 196 (324)
T 3uca_A 119 MDNDDLRRGKPTNHKVFGEAIAVLAGDALLNE--AMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKE 196 (324)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCS
T ss_pred ccCCCCCCCCccHHHhcChHHHHHHHHHHHHH--HHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCC
Confidence 79999999999999999998 89999999965 688887642111112 57788888876 67999999999997653
Q ss_pred CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccch
Q 025823 77 EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTD 155 (247)
Q Consensus 77 ~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~D 155 (247)
. +++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| +|+|
T Consensus 197 ~-----~t~~~y~~i~~~KTa~L-~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D 270 (324)
T 3uca_A 197 E-----ISLKELDYMHLKKTGEL-IKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKD 270 (324)
T ss_dssp S-----CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_pred C-----CCHHHHHHHHhcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchH
Confidence 2 69999999999999999 999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 025823 156 IEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVL 235 (247)
Q Consensus 156 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L 235 (247)
+++||+|||++++++ .+++.++++.++|++.|+.||.+ ++.|
T Consensus 271 l~egK~T~p~l~al~------------------------------------~a~~~a~~~~~~A~~~L~~l~~~--~~~L 312 (324)
T 3uca_A 271 QESNKNNYITIFGLE------------------------------------ECKKKCVNITEECIEILSSIKGN--TEPL 312 (324)
T ss_dssp ------CHHHHHCHH------------------------------------HHHHHHHHHHHHHHHHHHTSSSC--CHHH
T ss_pred hhcCCccHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCCc--HHHH
Confidence 999999999999654 45566889999999999999964 4899
Q ss_pred HHHHHHHHhccC
Q 025823 236 KSFLAKIYKRQK 247 (247)
Q Consensus 236 ~~l~~~~~~R~~ 247 (247)
..|++++++|.+
T Consensus 313 ~~la~~i~~R~~ 324 (324)
T 3uca_A 313 KVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHhccC
Confidence 999999999975
No 28
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=2.9e-48 Score=337.30 Aligned_cols=200 Identities=23% Similarity=0.251 Sum_probs=153.2
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCc-hHHHHHHHHHHHH--HHHhhHHHhhhcccccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKP-YYVDLLDLFNEVE--FQTASGQMIDLITTIEG 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~ 76 (247)
||+|++|||+||+|++||++ +|++||+|++. +|+++++.....+ ...++++.+++++ ..|+.||.+|+.+....
T Consensus 90 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 167 (317)
T 4f62_A 90 MDNDELRRGKPTCHIQFDEATAILAGDALQTF--AFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKN 167 (317)
T ss_dssp SCC-------CCHHHHSCHHHHHHHHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSC
T ss_pred ccCCCCcCCCccHHhhcCHHHHHHHHHHHHHH--HHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCC
Confidence 79999999999999999998 89999999954 7899987411111 2356788888876 47999999999987542
Q ss_pred CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccc
Q 025823 77 EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGT 154 (247)
Q Consensus 77 ~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~ 154 (247)
+++++|++|+.+|||+| |.+||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+|| +|+
T Consensus 168 ------~t~~~y~~i~~~KTg~L-~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 240 (317)
T 4f62_A 168 ------ISLAELEQMHVHKTGAL-IKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFS 240 (317)
T ss_dssp ------CCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred ------CCHHHHHHHHHhchHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcch
Confidence 69999999999999999 9999999999999 89999999999999999999999999999999999999 999
Q ss_pred hHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 155 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 155 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
|+++||+|||+++++ +++++.++++.++|++.|+.||+ .++.
T Consensus 241 Dl~egK~T~p~l~gl------------------------------------e~a~~~a~~~~~~A~~~L~~l~~--~~~~ 282 (317)
T 4f62_A 241 DAEANKATYPKLLGL------------------------------------DGAKALVVRLHEQAIAQISEFGD--KSQP 282 (317)
T ss_dssp ----CCCCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHGGGGG--GGHH
T ss_pred HHhcCCCcHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhCch--hHHH
Confidence 999999999999954 55667789999999999999986 4789
Q ss_pred HHHHHHHHHhccC
Q 025823 235 LKSFLAKIYKRQK 247 (247)
Q Consensus 235 L~~l~~~~~~R~~ 247 (247)
|..|++++++|.+
T Consensus 283 L~~l~~~~~~R~~ 295 (317)
T 4f62_A 283 LTDLANYIIDRNH 295 (317)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999963
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-48 Score=338.28 Aligned_cols=200 Identities=21% Similarity=0.219 Sum_probs=161.1
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH--HHHhhHHHhhhcccccCC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~ 77 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++...+.....++++.+++++ ..|+.||.+|+.+...
T Consensus 96 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~-- 171 (302)
T 3p8l_A 96 MDDDDLRRGKPTNHKVFGEATAILAGDGLLTG--AFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV-- 171 (302)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--
T ss_pred ccCCCccCCCcchhhhcChHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC--
Confidence 79999999999999999998 89999999965 68888864212223457788888886 6899999999998754
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchH
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDI 156 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl 156 (247)
.+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+|+
T Consensus 172 ----~~t~~~y~~i~~~KTg~L-~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl 246 (302)
T 3p8l_A 172 ----SLTLEELAAVHEKKTGAL-IEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDE 246 (302)
T ss_dssp ----CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred ----CCCHHHHHHHHHcCcHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHH
Confidence 269999999999999999 999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC---hHHHH
Q 025823 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT---KEVQA 233 (247)
Q Consensus 157 ~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~---~~~~~ 233 (247)
++||+|||++++++.+ ++.++++.++|++.|+.||+ ++.++
T Consensus 247 ~egK~T~p~l~~l~~a------------------------------------~~~~~~~~~~A~~~L~~~~~~~~~~~~~ 290 (302)
T 3p8l_A 247 ALNKSTYPALLGIAGA------------------------------------KDALTHQLAEGSAVLEKIKANVPNFSEE 290 (302)
T ss_dssp ----CCHHHHHCHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred hcCCCcHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHhcccccCChhHH
Confidence 9999999999976653 34567888999999999975 56789
Q ss_pred HHHHHHHHHHhc
Q 025823 234 VLKSFLAKIYKR 245 (247)
Q Consensus 234 ~L~~l~~~~~~R 245 (247)
.|..|++++++|
T Consensus 291 ~L~~l~~~~~~R 302 (302)
T 3p8l_A 291 HLANLLTQLQLR 302 (302)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHhhC
Confidence 999999999887
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.6e-48 Score=340.53 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=162.5
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccC--CCchHHHHHHHHHHHH--HHHhhHHHhhhccccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFR--DKPYYVDLLDLFNEVE--FQTASGQMIDLITTIE 75 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~ 75 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++... +++...++++.+++++ ..++.||.+|+.+..+
T Consensus 130 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~ 207 (335)
T 2h8o_A 130 MDDDDLRRGQPTVHRKFDEATAILAGDSLLTL--AFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK 207 (335)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS
T ss_pred ccCCCcCCCCCcHhhhcChHHHHHHHHHHHHH--HHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC
Confidence 79999999999999999998 89999999965 7899987511 1123467888999988 8899999999998765
Q ss_pred CCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccc
Q 025823 76 GEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGT 154 (247)
Q Consensus 76 ~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~ 154 (247)
. +++++|++|+.+|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| +|+
T Consensus 208 -~-----~~~~~y~~i~~~KTa~L-~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 280 (335)
T 2h8o_A 208 -A-----PDEDGIITLQAMKTGAL-LRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGK 280 (335)
T ss_dssp -C-----CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred -C-----CCHHHHHHHHHhchHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcch
Confidence 2 69999999999999999 999999999999999999999999999999999999999999999999999 999
Q ss_pred hHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 155 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 155 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
|+++||+|||+++++ +++++.++++.++|++.|+.+|. .++.
T Consensus 281 Dl~egK~T~p~l~~l------------------------------------e~a~~~a~~~~~~A~~~L~~l~~--~~~~ 322 (335)
T 2h8o_A 281 DAARGKGTLVALRGE------------------------------------AWAREKLQEQVAEASELLAPYGE--KAAI 322 (335)
T ss_dssp -----CCCHHHHHCH------------------------------------HHHHHHHHHHHHHHHHHTGGGGG--GGHH
T ss_pred HHhcCCccHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhCch--hHHH
Confidence 999999999999863 46778899999999999999985 5789
Q ss_pred HHHHHHHHHhccC
Q 025823 235 LKSFLAKIYKRQK 247 (247)
Q Consensus 235 L~~l~~~~~~R~~ 247 (247)
|..|++++++|.+
T Consensus 323 L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 323 LIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccC
Confidence 9999999999974
No 31
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.7e-48 Score=337.72 Aligned_cols=200 Identities=24% Similarity=0.270 Sum_probs=149.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRD---KPYYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++.... +....++++.+++++ ..|+.||.+|+.+..
T Consensus 95 mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~ 172 (302)
T 3p8r_A 95 MDDDELRRGKPTCHIQFDEATAILTGDALQTL--AFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAEN 172 (302)
T ss_dssp HHCCC--------------HHHHHHHHHHHHH--HHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred ccCCCcCCCCcchhhhcCHHHHHHHHHHHHHH--HHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC
Confidence 69999999999999999998 89999999954 78999874211 112356788888876 689999999999875
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-c
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-V 152 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~ 152 (247)
. .+++++|++|+.+|||+| |.+||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .
T Consensus 173 ~------~~s~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~ 245 (302)
T 3p8r_A 173 R------LISLEELETIHRNKTGAL-MRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQ 245 (302)
T ss_dssp S------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred C------CCCHHHHHHHhccCcHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCc
Confidence 3 269999999999999999 9999999999999 88888999999999999999999999999999999999 9
Q ss_pred cchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 025823 153 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQ 232 (247)
Q Consensus 153 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~ 232 (247)
|+|+++||+|||+++++ +++++.++++.++|++.|+.||++ +
T Consensus 246 g~Dl~egK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A~~~L~~l~~~--~ 287 (302)
T 3p8r_A 246 GSDQELNKSTYPALLGL------------------------------------EGAQQKAHTLLQEALLALEAIPYN--T 287 (302)
T ss_dssp -------CCCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHTTCSSC--T
T ss_pred chHHhcCCchHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhCCcc--H
Confidence 99999999999999964 456667889999999999999975 6
Q ss_pred HHHHHHHHHHHhccC
Q 025823 233 AVLKSFLAKIYKRQK 247 (247)
Q Consensus 233 ~~L~~l~~~~~~R~~ 247 (247)
+.|..|++++++|.+
T Consensus 288 ~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 288 EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 899999999999974
No 32
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=3.9e-48 Score=335.45 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=164.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccC-C-Cc-hHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFR-D-KP-YYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~-~-~~-~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||+. +|++||++++. +|+++++... . .+ ...++++.+++++ ..|+.||.+|+.+..
T Consensus 89 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~ 166 (304)
T 3lsn_A 89 MDDDDLRRGQPTTHKAFDEACAILAGDGLQSL--AFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVG 166 (304)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred ccCCCccCCCCchHhhcCHHHHHHHHHHHHHH--HHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccC
Confidence 79999999999999999998 89999999964 7899987521 1 11 2456788888887 459999999999876
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-c
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE-NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-V 152 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~ 152 (247)
+. +++++|++|+.+|||+| |.+||++|++++|+ +++..+.+++||.++|+||||+||++|++|+++.+|| .
T Consensus 167 ~~------~s~~~y~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~ 239 (304)
T 3lsn_A 167 LK------LDQQALEYMHRHKTGAL-IEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQ 239 (304)
T ss_dssp CC------CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CC------CCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCc
Confidence 42 69999999999999999 99999999999999 8889999999999999999999999999999999999 9
Q ss_pred cchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 025823 153 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQ 232 (247)
Q Consensus 153 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~ 232 (247)
|+|+++||+|||+++++ +++++.++++.++|.+.|+.||+ .+
T Consensus 240 g~Dl~egK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A~~~L~~l~~--~~ 281 (304)
T 3lsn_A 240 GADIARDKPTYPALLGL------------------------------------AAAKEYALELRDQALHALRPFDA--AA 281 (304)
T ss_dssp --------CCHHHHHCH------------------------------------HHHHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred ccHHhcCCccHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhCch--hH
Confidence 99999999999999954 45566688999999999999996 47
Q ss_pred HHHHHHHHHHHhccC
Q 025823 233 AVLKSFLAKIYKRQK 247 (247)
Q Consensus 233 ~~L~~l~~~~~~R~~ 247 (247)
+.|..|++++++|..
T Consensus 282 ~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 282 EPLRELARYIVERRS 296 (304)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcc
Confidence 899999999999963
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=5.7e-48 Score=333.41 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=152.7
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHHHHHHHH--HHHhhHHHhhhcccccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRD-KPYYVDLLDLFNEVE--FQTASGQMIDLITTIEG 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~ 76 (247)
||+|++|||+||+|++||++ +|++||+|++. +|+++++.... .....++++.+++++ ..|+.||.+|+.+....
T Consensus 86 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~ 163 (297)
T 3m0g_A 86 MDNDDLRRGLPTVHKKWDDATAVLAGDALQTL--AFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAA 163 (297)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSS
T ss_pred cCCCCccCCCCCchhhcChHHHHHHHHHHHHH--HHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcC
Confidence 79999999999999999998 89999999954 78998875321 112457889999988 88999999999987322
Q ss_pred CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccch
Q 025823 77 EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTD 155 (247)
Q Consensus 77 ~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~D 155 (247)
. .+++++|++|+.+|||+| |.+||++|++++|++++ .+++||.++|+||||+||++|++++++.+|| .|+|
T Consensus 164 ~----~~~~~~y~~i~~~KTg~L-~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~D 235 (297)
T 3m0g_A 164 V----PLTLDEIIRLQAGKTGAL-ISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKD 235 (297)
T ss_dssp S----CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC----------------
T ss_pred C----CCCHHHHHHHHccchHHH-HHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccch
Confidence 2 269999999999999999 99999999999998876 8999999999999999999999999999999 9999
Q ss_pred HhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 025823 156 IEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVL 235 (247)
Q Consensus 156 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L 235 (247)
+++||+|||++++++. +++.++++.++|.+.|+.||++. +.|
T Consensus 236 l~~gK~T~p~l~~l~~------------------------------------a~~~~~~~~~~A~~~L~~~~~~~--~~L 277 (297)
T 3m0g_A 236 AEAHKATFVSLLGLAG------------------------------------AKSRAADLVAEAEAALAPYGEAA--STL 277 (297)
T ss_dssp -----CCHHHHHCSSH------------------------------------HHHHHHHHHHHHHHHTGGGGGGG--HHH
T ss_pred hhcCCccHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHhCCCCH--HHH
Confidence 9999999999996554 44557888999999999999754 789
Q ss_pred HHHHHHHHhccC
Q 025823 236 KSFLAKIYKRQK 247 (247)
Q Consensus 236 ~~l~~~~~~R~~ 247 (247)
..|++++++|.+
T Consensus 278 ~~l~~~~~~R~~ 289 (297)
T 3m0g_A 278 RACARYVIERDK 289 (297)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHHhcc
Confidence 999999999963
No 34
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=2.6e-48 Score=336.78 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=178.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcc-cCC--CchHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNH-FRD--KPYYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ... .....++++.+++++ ..++.||.+|+.+..
T Consensus 89 ~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~ 166 (299)
T 1rqj_A 89 MDDDDLRRGLPTCHVKFGEANAILAGDALQTL--AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG 166 (299)
T ss_dssp TTCCCEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred hcCCCCCCCCCChhhhcChHHHHHHHHHHHHH--HHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccC
Confidence 79999999999999999998 89999999965 78998873 111 113456788888886 789999999999876
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-c
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM-AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-V 152 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~-ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~ 152 (247)
+ . +++++|++|+.+|||+| |.+||++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+|| .
T Consensus 167 ~-~-----~~~~~y~~i~~~KTa~L-~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~ 239 (299)
T 1rqj_A 167 K-H-----VPLDALERIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 239 (299)
T ss_dssp T-C-----CCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCT
T ss_pred C-C-----CCHHHHHHHHHhhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCh
Confidence 5 2 69999999999999999 99999999999 9999999999999999999999999999999999999999 9
Q ss_pred cchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHH
Q 025823 153 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEV 231 (247)
Q Consensus 153 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~-~~~ 231 (247)
|+|+++||+|||++++++ ++++.++++.++|++.|+.+|. ++.
T Consensus 240 g~Dl~~gK~T~p~l~~l~------------------------------------~a~~~~~~~~~~A~~~L~~l~~~~~~ 283 (299)
T 1rqj_A 240 GADQQLGKSTYPALLGLE------------------------------------QARKKARDLIDDARQSLKQLAEQSLD 283 (299)
T ss_dssp THHHHHTCCCHHHHHCHH------------------------------------HHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hhHHHcCCCcHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999999874 3456788999999999999986 447
Q ss_pred HHHHHHHHHHHHhccC
Q 025823 232 QAVLKSFLAKIYKRQK 247 (247)
Q Consensus 232 ~~~L~~l~~~~~~R~~ 247 (247)
++.|..|++++++|.+
T Consensus 284 ~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 284 TSALEALADYIIQRNK 299 (299)
T ss_dssp CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8999999999999974
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.1e-47 Score=333.68 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=162.8
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCC---chHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDK---PYYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++..... ....++++.+++++ ..|+.||.+|+.+..
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~ 172 (313)
T 3lom_A 95 MDNDDLRRGKPSCHKAFDEATAILVGDGMQAL--AIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELA 172 (313)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred ccCCCccCCCCCchhhcChHHHHHHHHHHHHH--HHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC
Confidence 79999999999999999998 89999999954 789888753221 13456788888876 689999999999976
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK- 151 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK- 151 (247)
+.. +++++|++|+.+|||+| |.+||++ |+++| ++++.++.+++||.++|+||||+||++|++|+++.+||
T Consensus 173 ~~~-----~t~~~y~~i~~~KTg~L-~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~ 245 (313)
T 3lom_A 173 KSS-----VTEEQLREIHLLKTGKL-ILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKG 245 (313)
T ss_dssp SSC-----CCHHHHHHHHHHHTHHH-HHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCC-----CCHHHHHHHHHcCcHHH-HHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCC
Confidence 532 69999999999999999 9999999 99999 89999999999999999999999999999999999999
Q ss_pred ccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 025823 152 VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEV 231 (247)
Q Consensus 152 ~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~ 231 (247)
.|+|+++||+|||+++++ +++++.++++.++|.+.|+.||++
T Consensus 246 ~g~Dl~~gK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A~~~L~~l~~~-- 287 (313)
T 3lom_A 246 RSSDQANQKTTFATLFNK------------------------------------QQLEEEIAVHYQIAMDSLRLFGSK-- 287 (313)
T ss_dssp --------CCCHHHHSCH------------------------------------HHHHHHHHHHHHHHHHTTTTTGGG--
T ss_pred CcchhhcCCccHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhCCcc--
Confidence 999999999999999854 445666888999999999999974
Q ss_pred HHHHHHHHHHHHhcc
Q 025823 232 QAVLKSFLAKIYKRQ 246 (247)
Q Consensus 232 ~~~L~~l~~~~~~R~ 246 (247)
++.|.+|++++++|.
T Consensus 288 ~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 288 AAALIELTKQLQNRS 302 (313)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 689999999999985
No 36
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=6.1e-48 Score=334.24 Aligned_cols=201 Identities=20% Similarity=0.234 Sum_probs=164.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH--HHHhhHHHhhhcccccCC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~ 77 (247)
||+|++|||+||+|++||++ ||++||++++. +|+++++...+.....++++.+++++ ..|+.||.+|+.+....
T Consensus 95 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~- 171 (309)
T 3pde_A 95 MDNDALRRGEPTNHVKFGAGMATLAGDGLLTL--AFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVN- 171 (309)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCC-
T ss_pred ccCCCCCCCCcchhhhcChHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCC-
Confidence 79999999999999999998 89999999964 78999874222223457888898886 68999999999987542
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchH
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDI 156 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl 156 (247)
+|+++|++|+.+|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+|+
T Consensus 172 -----~t~~~y~~i~~~KTg~L-~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl 245 (309)
T 3pde_A 172 -----LPLSQLRVLHKEKTGAL-LHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDA 245 (309)
T ss_dssp -----CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------C
T ss_pred -----CCHHHHHHHHHhccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchh
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 157 ~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
++||+|||++++++.+.++ ++++.++|.+.|+.+|.+-..+.|.
T Consensus 246 ~egK~T~p~l~al~~a~~~------------------------------------~~~~~~~a~~~l~~~~~~~~~~~L~ 289 (309)
T 3pde_A 246 DEAKNTYPGKLGLIGANQA------------------------------------LIDTIHSGQAALQGLPTSTQRDDLA 289 (309)
T ss_dssp TTTSSSHHHHHCHHHHHHH------------------------------------HHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred hcCCccHHHHHHHHHhHHH------------------------------------HHHHHHHHHHHHHHhhhccCHHHHH
Confidence 9999999999999875432 4566778888998876542222299
Q ss_pred HHHHHHHhcc
Q 025823 237 SFLAKIYKRQ 246 (247)
Q Consensus 237 ~l~~~~~~R~ 246 (247)
.|++++++|+
T Consensus 290 ~l~~~~~~r~ 299 (309)
T 3pde_A 290 AFFSYFDTER 299 (309)
T ss_dssp GGGGGSCTTT
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 37
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-46 Score=323.66 Aligned_cols=191 Identities=20% Similarity=0.330 Sum_probs=163.5
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. + + .++++.+++++..++.||.+|+.+..+..
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~--a~~~l~~~--~-~--~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~-- 161 (284)
T 2ftz_A 91 IDNADFRRGXPSCHRTYGEDIALLAGDGLFFL--AFSQISXI--G-N--SXIFEEFSETAYXLLLGEAMDVEFERRXM-- 161 (284)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTT--C-C--HHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCCCCCCCCccHHhhcCHHHHHHHHHHHHHH--HHHHHHhC--C-h--HHHHHHHHHHHHHHhhhhHHHHHhccCcC--
Confidence 79999999999999999998 89999999965 78999874 1 1 37899999999999999999999876531
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
.+++++|++|+.+|||+| |++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|| +|+|++
T Consensus 162 --~~~~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~- 234 (284)
T 2ftz_A 162 --EVSQEMVERMYAFXTGAL-FAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE- 234 (284)
T ss_dssp --CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------
T ss_pred --CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc-
Confidence 269999999999999999 99999999999998876 8999999999999999999999999999999 999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH-HHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV-LKS 237 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~-L~~ 237 (247)
|+|||++++++ ++++.++++.++|++.|+.+|+ +.++. |..
T Consensus 235 -K~T~p~l~~l~------------------------------------~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~ 276 (284)
T 2ftz_A 235 -XVTLVXXVGIQ------------------------------------XAREMADXYYEEVLXGIESEGL-FRTLFLLXE 276 (284)
T ss_dssp ---CHHHHHCHH------------------------------------HHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred -ccchHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHH
Confidence 99999999743 4567789999999999999997 67888 999
Q ss_pred HHHHHHhc
Q 025823 238 FLAKIYKR 245 (247)
Q Consensus 238 l~~~~~~R 245 (247)
|++++++|
T Consensus 277 l~~~~~~R 284 (284)
T 2ftz_A 277 LXQMVEER 284 (284)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999987
No 38
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.1e-46 Score=325.22 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=168.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. ..++++++++++..++.||.+|+.+..+.
T Consensus 85 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--a~~ll~~~------~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--- 153 (295)
T 3ipi_A 85 LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAK--SIAFISPY------GEKVIQDFGKAGMDMAEGEVLDLKLEDES--- 153 (295)
T ss_dssp HHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHH--HHHHHGGG------CHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cCCCCCCCCCccHHHhcCccHHHHHHHHHHHH--HHHHHHHc------hHHHHHHHHHHHHHHHccchHHHHccCCC---
Confidence 69999999999999999998 89999999965 78888764 24788999999999999999999987642
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhC
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDY 159 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~g 159 (247)
+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++ | .|+.+|
T Consensus 154 ---~t~~~y~~~i~~KTg~L-~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--g---kd~~~g 224 (295)
T 3ipi_A 154 ---FGENDYFKCIYKKTASL-FAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--G---KESKFT 224 (295)
T ss_dssp -----CHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---------
T ss_pred ---CCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C---CCcccC
Confidence 58999999999999999 99999999999999999999999999999999999999999998763 5 478999
Q ss_pred cccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 025823 160 KCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239 (247)
Q Consensus 160 k~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l~ 239 (247)
|+|||++++++..++ ++++++++.++++.++|++.|+.||+++.++.|..|+
T Consensus 225 k~Tlp~l~al~~~~~----------------------------~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~ 276 (295)
T 3ipi_A 225 SETLPHIYMKSTSKE----------------------------EALKKSIDCVKLHVAAAKETLETFRECPARDKLFQIT 276 (295)
T ss_dssp -CCHHHHHTTTSCHH----------------------------HHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHH
T ss_pred cccHHHHHHHhcCch----------------------------hHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999875311 2489999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 025823 240 AKIYKRQ 246 (247)
Q Consensus 240 ~~~~~R~ 246 (247)
++++.|.
T Consensus 277 ~~~~~~~ 283 (295)
T 3ipi_A 277 DYITVDM 283 (295)
T ss_dssp HHTTGGG
T ss_pred HHHHHhC
Confidence 9998874
No 39
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1e-45 Score=320.96 Aligned_cols=199 Identities=21% Similarity=0.253 Sum_probs=158.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH--HHHHhhHHHhhhcccccCC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV--EFQTASGQMIDLITTIEGE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~GQ~~d~~~~~~~~ 77 (247)
||+|++|||+||+|++||+. +|++||++++. +|+++++...+.+...++++.++++ +..|+.||.+|+.+...
T Consensus 99 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~-- 174 (311)
T 3llw_A 99 MDNAALRRNHPTLHAKYDETTAVLIGDALNTY--SFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENT-- 174 (311)
T ss_dssp TTCCSEETTEECHHHHTCHHHHHHHHHHHHHH--HHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--
T ss_pred cCCCcccCCCCchhhhcCHHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--
Confidence 79999999999999999998 89999999954 7898886211222345678888888 57899999999998742
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccch
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH-VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTD 155 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~D 155 (247)
.+++++|++|+.+|||+| |.+||++|++++|++++.+ +.+++||.++|+||||+||++|++||++.+|| .|+
T Consensus 175 ----~~t~~~y~~i~~~KTg~L-~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~- 248 (311)
T 3llw_A 175 ----PLNLEQLTFLHEHKTAKL-ISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL- 248 (311)
T ss_dssp ----CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred ----CCCHHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc-
Confidence 269999999999999999 9999999999999999988 99999999999999999999999999999999 555
Q ss_pred HhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHH-HH
Q 025823 156 IEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEV-QA 233 (247)
Q Consensus 156 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~-~~~-~~ 233 (247)
++||+|||++++++.+.+ .++++.++|.+.|+.+|. +.. .+
T Consensus 249 -~~gK~T~p~l~~l~~a~~------------------------------------~~~~~~~~a~~~l~~~~~~~~~~~~ 291 (311)
T 3llw_A 249 -DSAKNSFVNLLGLERANN------------------------------------YAQTLKTEVLNDLDALKPAYPLLQE 291 (311)
T ss_dssp ---CCSCHHHHHCHHHHHH------------------------------------HHHHHHHHHHHHHTTSTTTCHHHHH
T ss_pred -ccCcchHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHhhhccccCccHHH
Confidence 999999999999997543 245677788899998543 223 57
Q ss_pred HHHHHHHHHHhcc
Q 025823 234 VLKSFLAKIYKRQ 246 (247)
Q Consensus 234 ~L~~l~~~~~~R~ 246 (247)
.|..|++++++|.
T Consensus 292 ~l~~l~~~~~~r~ 304 (311)
T 3llw_A 292 NLNALLNTLFKGE 304 (311)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcc
Confidence 8999999999985
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=4.4e-45 Score=314.31 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=152.9
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH--HHHHhhHHHhhhcccccCC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV--EFQTASGQMIDLITTIEGE 77 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~GQ~~d~~~~~~~~ 77 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++...+.+...+++++++++ +..++.||.+|+.+....
T Consensus 85 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~- 161 (291)
T 3npk_A 85 MDNADFRRGIPTLHKSYDETTAILVGDALNTE--AFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKR- 161 (291)
T ss_dssp TTCCSEETTEECHHHHTCHHHHHHHHHHHHHH--HHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSC-
T ss_pred ccCCCCCCCCCchhhhcCHHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC-
Confidence 79999999999999999998 89999999965 7888876421222345788899998 889999999999986532
Q ss_pred ccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchH
Q 025823 78 KDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDI 156 (247)
Q Consensus 78 ~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl 156 (247)
+++++|++|+++|||+| |.+||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|.|
T Consensus 162 -----~~~~~y~~i~~~KTg~L-~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d- 234 (291)
T 3npk_A 162 -----LSLNELEFLHTHKTARL-IAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND- 234 (291)
T ss_dssp -----CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -----CCHHHHHHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh-
Confidence 69999999999999999 999999999999999999999999999999999999999999999999999 8776
Q ss_pred hhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 157 EDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 157 ~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
+||+|||++++++.+.++ .+++.++|.+.|+.+|. ...+.|+
T Consensus 235 -~gK~T~p~l~~l~~a~~~------------------------------------~~~~~~~a~~~l~~~~~-~~~~~l~ 276 (291)
T 3npk_A 235 -IHKNSFVNLLGLEQAIKT------------------------------------KENLLNECEQDLEKLNE-KLAQMIQ 276 (291)
T ss_dssp ----CCHHHHHCHHHHHHH------------------------------------HHHHHHHHHHHHHTSCH-HHHHHHH
T ss_pred -cCcchHHHHHHHHHhHHH------------------------------------HHHHHHHHHHHHHHhch-hHHHHHH
Confidence 999999999999986432 34566677788888864 2256788
Q ss_pred HHHHHHHh
Q 025823 237 SFLAKIYK 244 (247)
Q Consensus 237 ~l~~~~~~ 244 (247)
+|+++.++
T Consensus 277 ~la~~~~~ 284 (291)
T 3npk_A 277 NLIIQYLE 284 (291)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 88877654
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=3.6e-42 Score=297.33 Aligned_cols=191 Identities=19% Similarity=0.178 Sum_probs=157.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHHH--HHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRD---KPYYVDLLDLFNEVE--FQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~ 74 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++.... .+...+++..++.++ ..++.||.+|+.+..
T Consensus 97 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~ 174 (293)
T 2j1p_A 97 MDNDDLRRGKPTNHKVYGEDVAVLAGDALLSF--AFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEG 174 (293)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---
T ss_pred ccCCCCCCCCCchhhhcCHHHHHHHHHHHHHH--HHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHcc
Confidence 79999999999999999998 89999999965 68888864211 111233444555554 579999999999865
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccc
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGT 154 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 154 (247)
+... .+++++|+.|+.+|||+| |.+||.+|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 175 ~~~~---~~~~~~y~~i~~~KTa~L-~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-------- 242 (293)
T 2j1p_A 175 LDLN---NVGLEHLKFIHLHKTAAL-LEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-------- 242 (293)
T ss_dssp CCHH---HHHHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CCCC---CCCHHHHHHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------
Confidence 3100 158999999999999999 9999999999999999999999999999999999999999999864
Q ss_pred hHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 025823 155 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 234 (247)
Q Consensus 155 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~ 234 (247)
|.|+|+++ +++++++.++++.++|++.|+.+|+ +.++.
T Consensus 243 -----K~T~p~l~------------------------------------gle~a~~~a~~~~~~A~~~L~~l~~-~~~~~ 280 (293)
T 2j1p_A 243 -----KLTYPKLM------------------------------------GLEKSREFAEKLNTEARDQLLGFDS-DKVAP 280 (293)
T ss_dssp -----CCCHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHTTTSCT-TTTHH
T ss_pred -----cccHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHhCCc-HHHHH
Confidence 89999998 3567778889999999999999984 45889
Q ss_pred HHHHHHHHHhccC
Q 025823 235 LKSFLAKIYKRQK 247 (247)
Q Consensus 235 L~~l~~~~~~R~~ 247 (247)
|..|++++++|.+
T Consensus 281 L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 281 LLALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999974
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.3e-41 Score=292.82 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=163.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHH-hcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRIL-KNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK 78 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~ 78 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++ ++. . +++++.+++++..++.||.+|+.+
T Consensus 92 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~--a~~~l~~~~-~-----~~~~~~~~~~~~~~~~GQ~~dl~~------ 157 (289)
T 2azj_A 92 VDLDATRRGDKAAWVVYGNRKVIFITNYLIPT--ALRIIQTSY-G-----DDALNTSIELWKDTSVGALRDMYD------ 157 (289)
T ss_dssp HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-C-----HHHHHHHHHHHHHHHHHHHHTTTT------
T ss_pred CCCCCCCCCCccHHHhcChHHHHHHHHHHHHH--HHHHHHhcC-c-----HHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 79999999999999999998 89999999965 78888 764 1 268899999999999999999975
Q ss_pred cCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhh
Q 025823 79 DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED 158 (247)
Q Consensus 79 d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~ 158 (247)
+++|++|+.+|||+| |.+||++|++++ ++++..+.+++||.++|+||||+||++|++|+ || .|+++
T Consensus 158 ------~~~y~~~i~~KTa~L-~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K--~dl~~ 223 (289)
T 2azj_A 158 ------NSDYIRTIELKTGSL-FKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KV--EEIDG 223 (289)
T ss_dssp ------TSCHHHHHHHHTHHH-HHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CT--TTCCT
T ss_pred ------HHHHHHHHHcchHHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CC--hhhhc
Confidence 357999999999999 999999999999 99999999999999999999999999999986 45 48999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEVQAVLKS 237 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~-~~~~~~L~~ 237 (247)
||.|||+++ +....+. ..+..++++.++|++.|+.+|. ++.++.|..
T Consensus 224 gk~Tlp~l~--~~~g~~~------------------------------a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~ 271 (289)
T 2azj_A 224 SAKQLFKYY--REGKLEE------------------------------YVRSVYLEYKQKYDELISNIPFQSKYLSEIRS 271 (289)
T ss_dssp TGGGGHHHH--TTTCHHH------------------------------HHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHT
T ss_pred CcccHHHHH--HcCCHHH------------------------------HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999999999 3322110 0123789999999999999997 888999999
Q ss_pred HHHHHHhcc
Q 025823 238 FLAKIYKRQ 246 (247)
Q Consensus 238 l~~~~~~R~ 246 (247)
+++++++|.
T Consensus 272 l~~~~~~R~ 280 (289)
T 2azj_A 272 LPEFLANGL 280 (289)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999985
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=2.5e-35 Score=251.98 Aligned_cols=134 Identities=23% Similarity=0.301 Sum_probs=113.2
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ +|++||++++. +|+++++. . .++++++++++..++.||.+|+.+..+
T Consensus 91 mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~--A~~~l~~~---~---~~~~~~ls~~~~~~~~GQ~lDl~~~~~---- 158 (285)
T 4fp4_A 91 MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAE--SIKMAVNL---G---ADVVTYLADVAQRLSVGQALDLEGERD---- 158 (285)
T ss_dssp HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHH--HHHHHHTT---C---HHHHHHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHH--HHHHHHHh---h---HHHHHHHHHHHHHHHHhHHHHHhcccc----
Confidence 69999999999999999998 89999999965 68888864 1 288999999999999999999998542
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
. |+.+|||+| |++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .|| .|+||++
T Consensus 159 -------~---~i~~KTg~L-f~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e 225 (285)
T 4fp4_A 159 -------K---AAEFKTAPL-IEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGR 225 (285)
T ss_dssp -------H---HHHHHTHHH-HHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHH
T ss_pred -------c---hhhcCcHHH-HHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHH
Confidence 1 999999999 999999999999998 8889999999999999999999999999876 566 9999999
Q ss_pred C
Q 025823 159 Y 159 (247)
Q Consensus 159 g 159 (247)
+
T Consensus 226 ~ 226 (285)
T 4fp4_A 226 Y 226 (285)
T ss_dssp H
T ss_pred H
Confidence 8
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.97 E-value=9.3e-32 Score=229.92 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=108.3
Q ss_pred CCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCC--CchHHHHHHHH---HHHH--HHHhhHHHhhhccc
Q 025823 2 DGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRD--KPYYVDLLDLF---NEVE--FQTASGQMIDLITT 73 (247)
Q Consensus 2 D~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~---~~~~--~~~~~GQ~~d~~~~ 73 (247)
|++++|||+||+|++||++ +|++||++++. +|+++++.... ......+++++ ++++ ..++.||.+|+.+.
T Consensus 85 dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~--Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~ 162 (274)
T 3kra_B 85 TDGSRPVSKPAIQHKYGPNVELLTGDGIVPF--GFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIV 162 (274)
T ss_dssp SSSSSCCCSSCCCCSSCHHHHHHHHHHHHHH--HHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCC
T ss_pred cCCccCCCCCCchhhcChHHHHHHHHHHHHH--HHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhcc
Confidence 5666899999999999998 89999999965 78999875321 01123444444 4444 56899999999997
Q ss_pred ccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 025823 74 IEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF 139 (247)
Q Consensus 74 ~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ 139 (247)
.+ . +++++|++|+.+|||+| |.+||++|++++|++++.++.+++||.++|+||||+||.
T Consensus 163 ~~-~-----~t~~~y~~~i~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 163 DG-N-----TSLDFIEYVCKKKYGEM-HACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TT-S-----SCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-C-----CCHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 2 59999999999999999 999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.97 E-value=6.2e-30 Score=218.64 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=104.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCC-chHHHHHHHH---HHHH--HHHhhHHHhhhccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDK-PYYVDLLDLF---NEVE--FQTASGQMIDLITT 73 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~---~~~~--~~~~~GQ~~d~~~~ 73 (247)
||+|+ |||+||+|++||++ ||++||++++. +|+++++..... ....++++++ ++++ ..++.||.+|+.+.
T Consensus 88 ~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~--Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 164 (273)
T 3qkc_B 88 PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPF--GLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLN 164 (273)
T ss_dssp CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHH--HHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCC
T ss_pred ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHH--HHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC
Confidence 57888 99999999999998 89999999965 689988753211 1233445544 4444 57899999999983
Q ss_pred ccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 025823 74 IEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFL 140 (247)
Q Consensus 74 ~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~l 140 (247)
.+ ++++.|..|+++|||+| |++||++|++++|++++.++.+++||.++|+||||+||++
T Consensus 165 ~~-------~~~eyl~~I~~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 165 QL-------NDLELIEYVCKKKEGTL-HACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp SS-------CCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC-------CCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 35544445679999999 9999999999999999999999999999999999999996
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=95.47 E-value=0.76 Score=38.72 Aligned_cols=132 Identities=10% Similarity=0.065 Sum_probs=81.5
Q ss_pred HHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 025823 59 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 138 (247)
Q Consensus 59 ~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD 138 (247)
+..+..|...|+....- .|++++..-.++=-|.. ..+.+. +++..+. ......+.++|.|+|+.|=
T Consensus 110 ~~~li~g~~~Dl~~~~~-------~t~~dL~~Yc~~vAg~V-G~l~~~---l~g~~~~---~~~~~~A~~lG~AlQltNi 175 (293)
T 3acx_A 110 FYNLIDTVYKDQHFTMF-------ETDAELFGYCYGVAGTV-GEVLTP---ILSDHET---HQTYDVARRLGESLQLINI 175 (293)
T ss_dssp HHHHHHHHHHHTTCCCC-------SSHHHHHHHHHHHTHHH-HHHHHH---HHCSSCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-------CCHHHHHHHHHHhhHHH-HHHHHH---HhCCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 35677888888865321 37888877666655654 333332 2322231 2356799999999999997
Q ss_pred hhhccCCCCccCCccchHhhCcccHHHHHHHhhc-CHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHH
Q 025823 139 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 217 (247)
Q Consensus 139 ~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~ 217 (247)
+.|+ +.|+..|++-||.=..-+.. +++ .|.. +..++ .+.. ++ ......++.+..
T Consensus 176 lRDv----------~eD~~~gR~YLP~d~l~~~gv~~e---~l~~--~~~~~-~~~~---~~------~~l~~~A~~~~~ 230 (293)
T 3acx_A 176 LRDV----------GEDFENERIYFSKQRLKQYEVDIA---EVYQ--NGVNN-HYID---LW------EYYAAIAEKDFR 230 (293)
T ss_dssp HHCH----------HHHHHTTCCCSCHHHHHHHTCCHH---HHHH--HCCCH-HHHH---HH------HHHHHHHHHHHH
T ss_pred HHHH----------HHHHhCCcEEeCHHHHHHcCCCHH---Hhcc--cCCCH-HHHH---HH------HHHHHHHHHHHH
Confidence 7776 36899999999985444332 332 2222 11122 2222 22 233445788889
Q ss_pred HHHHHhhcCCCh
Q 025823 218 KLTKSIEAHPTK 229 (247)
Q Consensus 218 ~A~~~l~~lp~~ 229 (247)
+|...+..+|..
T Consensus 231 ~a~~~~~~lp~~ 242 (293)
T 3acx_A 231 DVMDQIKVFSIE 242 (293)
T ss_dssp HHHHTGGGSCTT
T ss_pred HHHHhHHhCCHH
Confidence 999999999864
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.36 E-value=0.48 Score=41.04 Aligned_cols=141 Identities=9% Similarity=-0.061 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 025823 54 LFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYF 133 (247)
Q Consensus 54 ~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~af 133 (247)
++.+.+..+..|-..|+... . .|++++..-.++=-|.. ..+.+.+-..-...++ ........+.++|.||
T Consensus 115 ~i~~~~~~m~~gm~~dl~~~---~-----~t~~~L~~Yc~~vAg~V-G~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~Al 184 (343)
T 3vj8_A 115 VIADICRRMGIGMAEFLDKH---V-----TSEQEWDKYCHYVAGLV-GIGLSRLFSASEFEDP-LVGEDTERANSMGLFL 184 (343)
T ss_dssp HHHHHHHHHHHHHHHGGGCC---C-----CSHHHHHHHHHHHTHHH-HHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC---C-----CCHHHHHHHHHhCcHHH-HHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHH
Confidence 44455566777887787521 1 48888877777666665 4444444322221222 2345678899999999
Q ss_pred HHHhhhhhccCCCCccCCccchHhhCcccHHHHHHHhhc-CHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHH
Q 025823 134 QVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYE 212 (247)
Q Consensus 134 Qi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~ 212 (247)
|+.|=+.|+ +.|+..|++=||.=..-+.. +++ .+...... ..+..++ ......+
T Consensus 185 QltNilRDv----------~eD~~~gR~YlP~e~l~~~g~~~~------dl~~~~~~---~~~~~~l------~~l~~~A 239 (343)
T 3vj8_A 185 QKTNIIRDY----------LEDQQGGREFWPQEVWSRYVKKLG------DFAKPENI---DLAVQCL------NELITNA 239 (343)
T ss_dssp HHHHHHHTH----------HHHHHTTCCCSCHHHHTTTCSSGG------GGGSGGGH---HHHHHHH------HHHHHHH
T ss_pred HHHHHHHHh----------HHHHhCCCeeCCHHHHHHcCCCHH------HHhcccCC---HHHHHHH------HHHHHHH
Confidence 999988887 46899999999975433322 221 12221111 2222222 3344567
Q ss_pred HHHHHHHHHHhhcCCCh
Q 025823 213 KESYEKLTKSIEAHPTK 229 (247)
Q Consensus 213 ~~~~~~A~~~l~~lp~~ 229 (247)
+.+..+|...+..+|+.
T Consensus 240 ~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 240 LHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp HTTHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 88899999999999874
No 48
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=95.27 E-value=0.65 Score=39.24 Aligned_cols=130 Identities=8% Similarity=-0.016 Sum_probs=79.6
Q ss_pred HHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 025823 60 FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF 139 (247)
Q Consensus 60 ~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ 139 (247)
..+..|...|+....- .|++++..-.++=-|.. ..+. .-+++..+++ ...++.++|+|||+.|=+
T Consensus 107 ~~li~g~~~Dl~~~~~-------~t~~dL~~Y~~~vAg~V-G~m~---~~i~g~~~~~----~~~~A~~lG~AlQltNil 171 (294)
T 4hd1_A 107 LRLIEANRRDQRKHTY-------DTWEDLRDYCRYSADPV-GRLV---LGIFGCLDDE----RARLSDATCTALQVANHM 171 (294)
T ss_dssp HHHHHHHHHHHHCSBC-------CSHHHHHHHHHHHTHHH-HHHH---HHHTTCCSHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCC-------CCHHHHHHHHHhccchH-HHHH---HHHhCCCCHH----HHHHHHHHHHHHHHHHHH
Confidence 4677888888865431 37788776565544443 2222 2234334433 356788999999999988
Q ss_pred hhccCCCCccCCccchHhhCcccHHHHHHHhh-cCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 025823 140 LDCFGSPEVIGKVGTDIEDYKCSWLVVKALEL-CNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 218 (247)
Q Consensus 140 ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~-~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~ 218 (247)
.|+- .|+..|++-+|.-..-+. .++++ + ........+.. ++ +.-...++.+.++
T Consensus 172 RDv~----------eD~~~gR~YlP~~~l~~~gv~~~d---l---~~~~~~~~~~~---~~------~~~~~~A~~~~~~ 226 (294)
T 4hd1_A 172 QDID----------RDLALGRIYVPRADLEQFGATLDD---I---RARRATDGVRR---CI------ALEVDRAQALFDE 226 (294)
T ss_dssp HTHH----------HHHHTTCBCSCHHHHHTTTCCHHH---H---HTTCCCHHHHH---HH------HHHHHHHHHHHHH
T ss_pred Hhch----------hhhccCceeCCHHHHHHcCCCHHH---H---hcCCCCHHHHH---HH------HHHHHHHHHHHHH
Confidence 8873 689999999997655443 23321 2 22222222322 22 2233457788889
Q ss_pred HHHHhhcCCCh
Q 025823 219 LTKSIEAHPTK 229 (247)
Q Consensus 219 A~~~l~~lp~~ 229 (247)
|...+..+|..
T Consensus 227 a~~~~~~lp~~ 237 (294)
T 4hd1_A 227 GRRLESLVPPR 237 (294)
T ss_dssp HGGGGGSSCHH
T ss_pred HHHHHHhCCHH
Confidence 98888888853
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=93.81 E-value=2.9 Score=36.51 Aligned_cols=104 Identities=6% Similarity=-0.089 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHH--HHHHHH
Q 025823 51 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHV--EVKDIL 126 (247)
Q Consensus 51 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~--~l~~~g 126 (247)
....+.+.+..++.+-..+..|.....+ +|.++|+.+-..-+|.. ..++ +.-...| .+++..+ .+.++-
T Consensus 178 ~~~r~~~~~~~~~~a~l~Ea~w~~~g~v----Ps~eEYl~~r~~s~g~~-~~~~--l~~~~~g~~l~~~~~~~p~~~~l~ 250 (382)
T 3kb9_A 178 WNARFARHFHTVIEAYDREFHNRTRGIV----PGVEEYLELRRLTFAHW-IWTD--LLEPSSGCELPDAVRKHPAYRRAA 250 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHTTHH-HHHH--HHHHHHTCCCCHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHhhhcCHH-HHHH--HHHHHcCCCCCHHHHhChHHHHHH
Confidence 4556777778888999998888765543 79999999865555543 2221 1112122 3333322 466778
Q ss_pred HHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 127 VQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 127 ~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
...+...-+.||+..|.- ...+|.. ++..++.-+.
T Consensus 251 ~~~~~i~rL~NDi~S~~k----------E~~~G~~~N~V~~~m~~~ 286 (382)
T 3kb9_A 251 LLSQEFAAWYNDLCSLPK----------EIAGDEVHNLGISLITHH 286 (382)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHTTCCCSHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH----------HHhcCCcccHHHHHHHcC
Confidence 889999999999999852 2334544 7777776554
No 50
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=93.25 E-value=3.7 Score=36.60 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHc-CCChHHHH--HHHHHHH
Q 025823 51 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-GENLDKHV--EVKDILV 127 (247)
Q Consensus 51 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~a-g~~~~~~~--~l~~~g~ 127 (247)
..+.+.+.+..++.+-+.+..|.....+ +|.++|+.+ +..||.. ..+.+ +...++ ..+++..+ .+.++-.
T Consensus 256 q~~r~~~~~~~~~~a~l~EA~W~~~g~v----PsleEYl~~-R~~sg~~-p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~ 328 (433)
T 3v1v_A 256 QSDRYRHDMARLHLGYLAEGAWAQTGHV----PEVWEYLAM-RQFNNFR-PCPTI-TDTVGGYELPADLHARPDMQRVIA 328 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHH-HHHSSST-TTGGG-HHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHH-HHHHhHH-HHHHH-HHHHcCCCCCHHHHhCchHHHHHH
Confidence 3555667777888888888888765543 799999997 4456543 22222 122222 13444333 4667788
Q ss_pred HHHHHHHHHhhhhhccCCCCccCCccchHhh-Ccc-cHHHHHHHhh
Q 025823 128 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIED-YKC-SWLVVKALEL 171 (247)
Q Consensus 128 ~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~-gk~-Tlp~l~al~~ 171 (247)
..+...-+.|||..|.-+ ..+ |.. +++.++..+.
T Consensus 329 ~~~~i~rL~NDI~Sy~kE----------~~~gg~~~N~V~~~mke~ 364 (433)
T 3v1v_A 329 LAGNATTIVNDLYSYTKE----------LNSPGRHLNLPVVIAERE 364 (433)
T ss_dssp HHHHHHHHHHHHHSHHHH----------TTSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHH----------HhcCCCCCcHHHHHHHhc
Confidence 889999999999998622 122 344 8877776654
No 51
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=90.64 E-value=7 Score=33.02 Aligned_cols=105 Identities=6% Similarity=-0.189 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcccccCCccCCCC-CHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHH--HHHH
Q 025823 50 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKY-SLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHV--EVKD 124 (247)
Q Consensus 50 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~-s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~--~l~~ 124 (247)
.....+.+.+...+.+-..+..|.....+ | |.++|+.+-..-.|.. +.+ .+.-...| .+++..+ .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~----P~s~eEYl~~r~~s~g~~-~~~--~~~~~~~g~~l~~~~~~~p~~~~ 206 (337)
T 1ps1_A 134 AWCARSARHWRNYFDGYVDEAESRFWNAP----CDSAAQYLAMRRHTIGVQ-PTV--DLAERAGRFEVPHRVFDSAVMSA 206 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHTCHH-HHH--HHHHHHHTCCCCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHcccccchh-hHH--HHHHHHcCCCCCHHHHhChHHHH
Confidence 34456777778888888888888766543 8 9999998765555543 211 22222222 3333322 4567
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCc-ccHHHHHHHhh
Q 025823 125 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALEL 171 (247)
Q Consensus 125 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~ 171 (247)
+-...+...-+.||+..|.- +..+|. .+.+.++.-+.
T Consensus 207 l~~~~~~i~rL~NDl~S~~k----------E~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 207 MLQIAVDVNLLLNDIASLEK----------EEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHHHHHHTHHH----------HHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH----------HHhcCCcchHHHHHHHHc
Confidence 88888999999999998852 223444 57777776665
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=90.00 E-value=7.1 Score=35.97 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHH-cC--CChHHHHHH---H
Q 025823 50 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM-AG--ENLDKHVEV---K 123 (247)
Q Consensus 50 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~-ag--~~~~~~~~l---~ 123 (247)
.++..+.+++..++.+-+.+..|.....+ ||.++|++...-=+|.. ++.+.+.+ .| .+++..+.+ .
T Consensus 366 ~~~~ylk~~w~~l~~ayl~EAkW~~~gyv----PT~EEYl~na~vSsg~~----~l~~~~~~~mg~~lt~e~~e~~~~~p 437 (554)
T 3g4d_A 366 YRVEYAKNAMIRLAQSYLVEAKWTLQNYK----PSFEEFKANALPTCGYA----MLAITSFVGMGDIVTPETFKWAASDP 437 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHGGGSCHH----HHHHHHHHTSCTTSCHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHhccceeehHH----HHHHHHHHhcCCCCCHHHHHhccccH
Confidence 35667777888899999999999776553 79999999876666643 12222222 23 455555554 4
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 124 DILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 124 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
++-...+...-+.||+..+... . .+|.. +..-+|..+.
T Consensus 438 ~i~~~~~~I~RL~NDI~S~k~E-~---------~rG~van~V~cYMke~ 476 (554)
T 3g4d_A 438 KIIQASTIICRFMDDVAEHKFK-H---------RREDDCSAIECYMEEY 476 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC----------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhh-h---------ccCCccHHHHHHHHhc
Confidence 7788899999999999998632 2 33444 7777777665
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=88.99 E-value=7.9 Score=35.65 Aligned_cols=104 Identities=7% Similarity=-0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHH---HHHHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEV---KDILV 127 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l---~~~g~ 127 (247)
+..+.++...++.+-+.+..|.....+ ||.++|++...-=+|...+...+.++ ++. .+++..+.+ -++-.
T Consensus 366 ~~~l~~~w~~l~~ayl~EAkW~~~gyv----PT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~ 439 (555)
T 3n0f_A 366 LPYLTKAWADLCNAFLQEAKWLYNKST----PTFDDYFGNAWKSSSGPLQLIFAYFA--VVQNIKKEEIENLQKYHDIIS 439 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHTSHHHHHHHHHHH--HCSSCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCC----CCHHHHHHhcccchhHHHHHHHHHHh--cCCCCCHHHHHhcccchHHHH
Confidence 455666677788888888888766553 79999999877666643111111111 122 455555443 46778
Q ss_pred HHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 128 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 128 ~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
..+...-+.||+..+.. ...+|.. +...+|..+.
T Consensus 440 ~~~~i~RL~NDi~S~~~----------E~~rG~vas~V~cYMke~ 474 (555)
T 3n0f_A 440 RPSHIFRLCNDLASASA----------EIARGETANSVSCYMRTK 474 (555)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHTTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhh----------hhhcCCcchHHHHHHHHc
Confidence 88889999999998852 2344555 7777777665
No 54
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=86.28 E-value=7 Score=35.94 Aligned_cols=103 Identities=14% Similarity=0.004 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHc-C-CChHHHHHH---HHH
Q 025823 51 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-G-ENLDKHVEV---KDI 125 (247)
Q Consensus 51 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~a-g-~~~~~~~~l---~~~ 125 (247)
++..+.++...++.+-+.+..|.....+ ||.++|++...-=+|.. . +++ .+.++ . .+.+..+.+ -++
T Consensus 363 ~~~ylk~~w~~l~~ayl~EAkW~~~gyv----PT~EEYl~na~vSsg~~-~-l~~--~~f~g~~~lt~e~~e~~~~~p~i 434 (550)
T 3m00_A 363 IVCHAIERMKEIVRNYNVESTWFIEGYT----PPVSEYLSNALATTTYY-L-LAT--TSYLGMKSATEQDFEWLSKNPKI 434 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHTGGGSHH-H-HHH--HHHHTCTTCCHHHHHHHHTCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHhccccchHH-H-HHH--HHHHcCCCCcHHHHHhhcccHHH
Confidence 4566677778888999999988766553 79999999876666643 2 111 11232 2 455554443 467
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 126 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 126 g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
-...+...-+.||+..+.. ...+|.. +..-+|..+.
T Consensus 435 ~~~~~~I~RL~NDI~S~k~----------E~~rG~vas~V~cYMke~ 471 (550)
T 3m00_A 435 LEASVIICRVIDDTATYEV----------EKSRGQIATGIECCMRDY 471 (550)
T ss_dssp HHHHHHHHHHHHHHHSHHH----------HHHTTCTTSHHHHHHHHH
T ss_pred HHHHhhhheeeccchhHHH----------HHhcCCcccHHHHHHHhc
Confidence 7888999999999988752 3355666 7777777665
No 55
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=78.76 E-value=39 Score=30.85 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHH---HHHHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEV---KDILV 127 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l---~~~g~ 127 (247)
+..+.++...++.+-..+..|.....+ ||.++|+++-..=+|.. . +.+..-..+++ .+++..+.+ ..+-.
T Consensus 357 ~~~l~~~w~~l~~ayl~EAkW~~~g~v----Pt~eEYl~~~~vS~g~~-~-l~~~~~~~~g~~~t~e~~e~~~~~p~i~~ 430 (543)
T 2ong_A 357 IPYLRQSWVDLADKYMVEARWFYGGHK----PSLEEYLENSWQSISGP-C-MLTHIFFRVTDSFTKETVDSLYKYHDLVR 430 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHTCHH-H-HHHHHHHHHSSCCCHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHhcccccchHH-H-HHHHHHHHcCCCCCHHHHHHhcccHHHHH
Confidence 345566667777888888888776653 79999998866555543 1 11111112233 445444432 35667
Q ss_pred HHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhhc
Q 025823 128 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALELC 172 (247)
Q Consensus 128 ~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~~ 172 (247)
..++..-+.||+..+.. +...|.. +...+|.-+..
T Consensus 431 ~~~~i~RL~NDi~S~~~----------E~~rG~~~n~V~cyMke~g 466 (543)
T 2ong_A 431 WSSFVLRLADDLGTSVE----------EVSRGDVPKSLQCYMSDYN 466 (543)
T ss_dssp HHHHHHHHHHHHHSSHH----------HHHTSCCCCHHHHHHHHTC
T ss_pred HHHHHHHHhcccchhhh----------ccccCCccHHHHHHHHHcC
Confidence 77888889999987752 3345555 78888877764
No 56
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=75.80 E-value=32 Score=28.23 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHh-hC--
Q 025823 83 YSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIE-DY-- 159 (247)
Q Consensus 83 ~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~-~g-- 159 (247)
+|.++|+.+-..-+|.. +.+.+..-++--..+++..+.+.++-...+...-+.||+..|.-.- .-|+ +.. +|
T Consensus 152 Ps~eeYl~~r~~s~g~~-~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~-~~g~---~~h~~~~~ 226 (300)
T 1di1_A 152 HELGHYLEYREKDVGKA-LLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE-EASR---TGHKEGAF 226 (300)
T ss_dssp CSHHHHHHHHHTCHHHH-HHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC-CC-------------
T ss_pred CCHHHHHHHHhhhccHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-Hhhc---cccccccc
Confidence 79999999766666643 2222111111112566777788889999999999999999986321 1121 110 11
Q ss_pred cccHHHHHHHhh
Q 025823 160 KCSWLVVKALEL 171 (247)
Q Consensus 160 k~Tlp~l~al~~ 171 (247)
..+...++.-+.
T Consensus 227 ~~n~V~~~m~~~ 238 (300)
T 1di1_A 227 LCSAVKVLAEES 238 (300)
T ss_dssp CCCHHHHHHHHH
T ss_pred cchhHHHHHHHc
Confidence 457777776554
No 57
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=75.23 E-value=49 Score=30.41 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHH-H-HcC-CChHHHHHH---HHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACAL-L-MAG-ENLDKHVEV---KDI 125 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga-~-~ag-~~~~~~~~l---~~~ 125 (247)
+..+.++...++.+-..+..|.....+ ||.++|++....=+|.. ++.+.+ . ++. .+++..+.+ -.+
T Consensus 384 ~~~l~~~w~~l~~ayl~EAkW~~~g~v----Pt~eEYl~~~~vSsg~~----~l~~~~~~~~g~~lt~e~~e~l~~~p~i 455 (569)
T 2j5c_A 384 TPYLRKVWVGLIESYLIEAKWYYKGHK----PSLEEYMKNSWISIGGI----PILSHLFFRLTDSIEEEAAESMHKYHDI 455 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHTSCH----HHHHHHHHHSCSSCCHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHhcccccchHH----HHHHHHHHHcCCCCCHHHHHHhhccHHH
Confidence 345566667778888888888776553 79999998866555533 122222 2 222 344444432 356
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccCCccchHhhCc-ccHHHHHHHhh
Q 025823 126 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALEL 171 (247)
Q Consensus 126 g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~ 171 (247)
-...++..-+.||+..+..+ . ..|. .+...+|.-+.
T Consensus 456 ~~~~~~i~RL~NDI~S~~~E-~---------~rG~v~s~V~cyMke~ 492 (569)
T 2j5c_A 456 VRASCTILRLADDMGTSLDE-V---------ERGDVPKSVQCYMNEK 492 (569)
T ss_dssp HHHHHHHHHHHHHHHC--------------------CCHHHHC----
T ss_pred HHHHHHHHHHhcccchhhhh-c---------ccCCccHHHHHHHHHc
Confidence 67777888899999888632 1 2333 35666666654
No 58
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=74.91 E-value=28 Score=31.93 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHH--cC-CChHH-HHH---HHHH
Q 025823 53 DLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AG-ENLDK-HVE---VKDI 125 (247)
Q Consensus 53 ~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~--ag-~~~~~-~~~---l~~~ 125 (247)
..+.++...++.+-..+..|.....+ ||.++|++.-..=+|.. ++.+.+.. +. .+++. .+. ...+
T Consensus 364 ~~l~~~w~~l~~ayl~EAkW~~~g~v----Pt~eEYl~~~~vS~g~~----~l~~~~~~~~g~~lt~e~~~e~~~~~p~i 435 (549)
T 1n1b_A 364 QYLRKSVVDLVEAYFHEAKWYHSGYT----PSLDEYLNIAKISVASP----AIISPTYFTFANASHDTAVIDSLYQYHDI 435 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHTCHH----HHHHHHHTTSTTCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHHhcccchhHH----HHHHHHHHHcCCCCcHHHHHhhhcccHHH
Confidence 44556667777777778888766553 79999999765544432 22222222 22 34444 333 3467
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhhc
Q 025823 126 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALELC 172 (247)
Q Consensus 126 g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~~ 172 (247)
-...++..-+.||+..+.-. ...|.. +...+|.-+..
T Consensus 436 ~~~~~~i~RL~NDi~S~~~E----------~~rG~v~n~V~cyMke~g 473 (549)
T 1n1b_A 436 LCLAGIILRLPDDLGTSYFE----------LARGDVPKTIQCYMKETN 473 (549)
T ss_dssp HHHHHHHHHHHHHHC-------------------CCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccchhhhh----------hccCCccHHHHHHHHHcC
Confidence 77888899999999887532 234554 88888887764
No 59
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=74.67 E-value=20 Score=34.60 Aligned_cols=103 Identities=8% Similarity=-0.111 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHH-H-HcC-CChHHHHHHH-----
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACAL-L-MAG-ENLDKHVEVK----- 123 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga-~-~ag-~~~~~~~~l~----- 123 (247)
+..+.++...++.+-..+..|.....+ ||.++|++...-=+|.- . + +.+.+ . ++. .+++..+...
T Consensus 627 ~~~l~~aw~~l~~ayl~EAkW~~~gyv----Pt~eEYl~na~vS~g~~-~-l-l~~~~~~~~g~~lt~e~~e~~~~~s~p 699 (817)
T 3sdr_A 627 VSFFRKGWEDYLLGYYEEAEWLAAEYV----PTLDEYIKNGITSIGQR-I-L-LLSGVLIMDGQLLSQEALEKVDYPGRR 699 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHTCHH-H-H-HHHHHTTCTTCCCCHHHHHTTCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHhcccccccc-H-H-HHHHHHHHcCCCCCHHHHhcccccchH
Confidence 445566677788888888888766553 79999999876555542 1 0 11111 1 222 4555555554
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 124 DILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 124 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
++-...+...-+.||+..+... ..+|.. +..-+|..+.
T Consensus 700 ~l~~~~~~I~RL~NDi~S~k~E----------~~rG~~assV~cYMke~ 738 (817)
T 3sdr_A 700 VLTELNSLISRLADDTKTYKAE----------KARGELASSIECYMKDH 738 (817)
T ss_dssp SHHHHHHHHHHHHHHHHSSCC----------------CCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccchHHHHH----------HhcCCcchHHHHHHHhC
Confidence 6778888999999999988632 234554 8888888776
No 60
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=73.13 E-value=6.6 Score=33.66 Aligned_cols=52 Identities=13% Similarity=-0.029 Sum_probs=30.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+++.+.|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+.-
T Consensus 57 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~G~ 108 (334)
T 3rmg_A 57 LVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE-----------STERRGQLSVNAIFNN 108 (334)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC-----------CCCcCCCccHHHhcCh
Confidence 344444555565666777788888999999999773 5778888888776653
No 61
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=70.42 E-value=77 Score=30.30 Aligned_cols=104 Identities=9% Similarity=-0.076 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC-CChHHHHHH---HHHHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEV---KDILV 127 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag-~~~~~~~~l---~~~g~ 127 (247)
+..+.++...++.+-..+..|.....+ ||.++|++...-=+|...+.+.+.. .++. .+++..+.. .++-.
T Consensus 568 ~~yl~~aw~~l~~ayl~EAkW~~~gyv----PT~eEYl~na~vSsg~~~l~~~~~~--~~G~~lt~e~~e~~~~~~~l~~ 641 (764)
T 3p5p_A 568 LAHIRKPWELYFNCYVQEREWLEAGYI----PTFEEYLKTYAISVGLGPCTLQPIL--LMGELVKDDVVEKVHYPSNMFE 641 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHTCHHHHHHHHHH--TSSSCCCGGGHHHHSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHhcchhchHHHHHHHHHH--HcCCCCcHHHHhhhhhhHHHHH
Confidence 455666677788888888888766553 7999999987655554201111111 1222 456666655 46788
Q ss_pred HHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 128 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 128 ~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
..+...-+.||+..+.. ...+|.. +..-+|..+.
T Consensus 642 ~~~~I~RL~NDi~S~k~----------E~~rG~~as~V~cYMke~ 676 (764)
T 3p5p_A 642 LVSLSWRLTNDTKTYQA----------EKARGQQASGIACYMKDN 676 (764)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHTTTCCCSHHHHHHHHS
T ss_pred HHHHHHHhhhcccchHH----------HHhcCCcchHHHHHHHhc
Confidence 88999999999998852 2345555 8888888776
No 62
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=69.70 E-value=40 Score=32.39 Aligned_cols=102 Identities=11% Similarity=-0.063 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHH-cC--CChHHHHHH---HHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM-AG--ENLDKHVEV---KDI 125 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~-ag--~~~~~~~~l---~~~ 125 (247)
+..+.++...++.+-..+..|.....+ ||.++|++...-=+|.. ++.+.+.. .| .+++..+.. .++
T Consensus 599 ~~ylk~aw~~l~~ayl~EAkW~~~gyv----PT~eEYl~na~vS~g~~----~l~~~~~~~~G~~lt~e~~e~~~~~~~l 670 (785)
T 3s9v_A 599 LGYIQNVWKVQLEAYTKEAEWSEAKYV----PSFNEYIENASVSIALG----TVVLISALFTGEVLTDEVLSKIDRESRF 670 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHTCHH----HHHHHHTTCSSSCCCHHHHTTTSTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHhccccchHH----HHHHHHHHHcCCCCCHHHHhcccccHHH
Confidence 445566667778888888888766553 79999999876655542 12222222 13 344444433 467
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 126 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 126 g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
-...+...-+.||+..+.. ...+|.. +...+|..+.
T Consensus 671 ~~~~~~I~RL~NDi~S~k~----------E~~rG~~as~V~cYMke~ 707 (785)
T 3s9v_A 671 LQLMGLTGRLVNDTKTYQA----------ERGQGEVASAIQCYMKDH 707 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHSCCCSHHHHHHHHC
T ss_pred HHHHHHHHHHhcccchhhH----------HHhcCCcchHHHHHHHhC
Confidence 7788888889999998852 3355665 7888888776
No 63
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=66.47 E-value=7.9 Score=33.27 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHH
Q 025823 105 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 105 ~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
+.+++.+.|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~ 111 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE-----------SRQRRGRPTANLL 111 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC-----------------CTTSCCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC-----------CCCcCCCccHHHh
Confidence 34455555655566666777788888999999999773 5677788776544
No 64
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=65.99 E-value=56 Score=27.03 Aligned_cols=87 Identities=10% Similarity=-0.019 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCccc
Q 025823 83 YSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCS 162 (247)
Q Consensus 83 ~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~T 162 (247)
+|.++|+.+-..-+|.. +.++...-+.--..+++..+...++-...+...-+.||+..|.-. ..-|+.+.-......+
T Consensus 166 Ps~eeYl~~r~~s~g~~-~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE-~~~g~~~~~~~~~~~N 243 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKE-LLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE-LYTSKTAHSEGGILCT 243 (320)
T ss_dssp CCHHHHHHHHHTCHHHH-HHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-CC-----------CCS
T ss_pred CCHHHHHHHhhhcccHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH-HHhhcccccccccccc
Confidence 79999998877777754 222211111111256677778888999999999999999998532 1111100000001467
Q ss_pred HHHHHHHhh
Q 025823 163 WLVVKALEL 171 (247)
Q Consensus 163 lp~l~al~~ 171 (247)
...++.-+.
T Consensus 244 ~V~~~m~~~ 252 (320)
T 3bny_A 244 SVQILAQEA 252 (320)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHc
Confidence 777777665
No 65
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=64.63 E-value=10 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 115 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 115 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+.+....+...-+.+=.+.-|.||+.|= +|+|.|++|+-..+
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~-----------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ-----------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC-----------CCCCCCCCcHHHhc
Confidence 4455556777778888899999999762 46677777765544
No 66
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=63.60 E-value=14 Score=30.89 Aligned_cols=52 Identities=10% Similarity=-0.083 Sum_probs=35.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+++.+.|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+.-
T Consensus 59 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~-----------s~~RRG~pt~h~~~G~ 110 (289)
T 2azj_A 59 FFTVALGGDIKDSYGGALAIEILHSASLALCDIVDL-----------DATRRGDKAAWVVYGN 110 (289)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTT-----------CCBSSSSBCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-----------CCCCCCCccHHHhcCh
Confidence 344444555555556667777788899999999762 4778888887765543
No 67
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=62.78 E-value=10 Score=32.67 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=37.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 105 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 105 ~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+.+++.+.|.+++....+...-+.+=.++=|.||+.|- +|+|.|++|+-..+
T Consensus 62 ~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG-----------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT-----------CCEETTEECHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------CCCCCCCccHHHhc
Confidence 33455555666666667777788888899999999883 46677777765544
No 68
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=61.01 E-value=16 Score=30.72 Aligned_cols=47 Identities=11% Similarity=-0.094 Sum_probs=34.4
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 111 MAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 111 ~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
+.|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+.
T Consensus 39 ~~~~~~~~~~~~A~avEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~~G 85 (301)
T 2q80_A 39 WLKVPEDKLQIIIEVTEMLHNASLLIDDIEDN-----------SKLRRGFPVAHSIYG 85 (301)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHccccCC-----------CCCCCCCcchhhccC
Confidence 33555555566777777888899999999873 577888888776554
No 69
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=59.68 E-value=8.9 Score=33.19 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=33.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
++.+.|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..+
T Consensus 56 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 56 AAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDR-----------GDVRRGLPTVRKAF 104 (358)
T ss_dssp HHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHTT-----------CCEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCccccC-----------CCCcCCCccHHHhc
Confidence 34333444555556777778888999999999772 46677888775544
No 70
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=58.10 E-value=11 Score=32.22 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
++.+.|.+++....+...-+.+=.++-|.||+.|= +|+|.|++|+-..+.
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~~G 106 (342)
T 1wy0_A 57 STEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDM-----------DETRRGKPTVHRIWG 106 (342)
T ss_dssp HTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHHT-----------CCCSTTSCCHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCcccC-----------CCCCCCCCccccccC
Confidence 33344555555556777777888899999999882 466777777665443
No 71
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=57.83 E-value=15 Score=31.20 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHH
Q 025823 105 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 105 ~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
+.+++.+.|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..
T Consensus 47 ~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~-----------s~~RRG~pt~h~~ 97 (330)
T 1wmw_A 47 TVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG-----------SEERRGRPALHRL 97 (330)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CCEETTEECHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC-----------CCCCCCCCccccc
Confidence 33444455656665566777777888899999999872 4677788876544
No 72
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=57.61 E-value=17 Score=30.47 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=33.5
Q ss_pred HHHcCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 109 LLMAGE-NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 109 a~~ag~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+.+.|. +++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+.-
T Consensus 52 ~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~~G~ 102 (299)
T 1v4e_A 52 FKNRGVEIGEDAISSLAALELVHLASLLHDDVIDG-----------ARFRRGKETINFMYGD 102 (299)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHHCH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCCC-----------CCCCCCCCchhhhcCH
Confidence 333344 4444455666677777889999999882 4778888887765543
No 73
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=54.33 E-value=14 Score=32.03 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=27.4
Q ss_pred HHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 107 CALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 107 ~ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
+++.+.| .+.+.+..+...-+.|=.+.=|.||+.|= +|+|.|++|+-..+.
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~-----------s~~RRG~pt~h~~~G 135 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE-----------ASMRRGVPSANARWD 135 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC-----------CCCCCCCCcHHhhcC
Confidence 3444445 45555556667778888899999999772 467788877755543
No 74
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=53.44 E-value=21 Score=30.11 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHcCCChH-HHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 108 ALLMAGENLD-KHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 108 ga~~ag~~~~-~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
.+.+.|.+.+ ....+...-+.+=.++-|.||+ .|= +|+|.|++|+-..+.
T Consensus 61 ~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD~-----------s~~RRG~pt~h~~~G 113 (302)
T 3p8l_A 61 TVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMDD-----------DDLRRGKPTNHKVFG 113 (302)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTTC-----------CSEETTEECHHHHHC
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchhccC-----------CCccCCCcchhhhcC
Confidence 3433444444 5556777778888899999999 873 467788887766553
No 75
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=53.41 E-value=20 Score=30.60 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=34.8
Q ss_pred HHHHcC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 108 ALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 108 ga~~ag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
++.+++ .+.+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+
T Consensus 66 ~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 66 FSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDD-----------SPTRRGVRTIQMTY 115 (334)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCC-----------CCCcCCCccHHHHc
Confidence 333444 46666667777778888899999999872 56788888875443
No 76
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=53.37 E-value=8.8 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025823 113 GENLDKHVEVKDILVQMGIYFQVQDDFLDC 142 (247)
Q Consensus 113 g~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 142 (247)
|.+++....+...-+.+=.+.=|.||+.|=
T Consensus 58 g~~~~~~~~~A~avEliH~asLIHDDi~D~ 87 (295)
T 3ipi_A 58 SGSYSRSLNAALAVEMMHSASLIHDDLLDQ 87 (295)
T ss_dssp HSCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCcCcCC
Confidence 444455556777778888999999999884
No 77
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=53.35 E-value=21 Score=30.55 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=32.3
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 111 MAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 111 ~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+.|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN-----------APLRRGQTTSHLIF 99 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CSEETTEECHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCccccC-----------CCCCCCCcchhhcc
Confidence 33555555556677777778889999999772 46778888776544
No 78
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=53.34 E-value=15 Score=31.28 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHH
Q 025823 106 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 106 ~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
.+++.+.|.+++....+...-+.+=.++-|.||+.|= +|+|.|++|+-..
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~ 102 (325)
T 3aqb_B 53 LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN-----------SDMRRGNTSVHIA 102 (325)
T ss_dssp HHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CCEETTEECHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC-----------CCCCCCCCCcccc
Confidence 3344444545455556666777778899999999882 4667777776543
No 79
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=52.50 E-value=20 Score=30.53 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 106 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 106 ~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+++.+.|.+++....+...-+.+=.+.-|.||+ .|= +|+|.|++|+-..+
T Consensus 83 l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD~-----------s~~RRG~pt~h~~~ 135 (324)
T 3uca_A 83 LLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDN-----------DDLRRGKPTNHKVF 135 (324)
T ss_dssp HHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC-----------CCCCCCCccHHHhc
Confidence 3344555666666666777778888999999999 872 57788888866554
No 80
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=52.20 E-value=22 Score=29.81 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 106 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 106 ~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+.+.+.|.+++....+...-+.+=.++=|.||+ .|= +|+|.|++|+-..+
T Consensus 50 l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~-----------s~~RRG~pt~h~~~ 102 (297)
T 3m0g_A 50 IESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDN-----------DDLRRGLPTVHKKW 102 (297)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCC-----------CCccCCCCCchhhc
Confidence 3344555667776777777788888899999999 662 57788888876543
No 81
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=52.02 E-value=22 Score=30.04 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=35.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
+.+.+.|.+++....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..
T Consensus 60 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD~-----------~~~RRG~pt~h~~ 110 (313)
T 3lom_A 60 LAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDN-----------DDLRRGKPSCHKA 110 (313)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC-----------CSEETTEECHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcccccC-----------CCccCCCCCchhh
Confidence 344555667776677777788888899999999 662 4677888876544
No 82
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=51.61 E-value=23 Score=29.95 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHcCCChHHH--HHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 108 ALLMAGENLDKH--VEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 108 ga~~ag~~~~~~--~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
++.+.|.+++.. ..+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..+.
T Consensus 59 ~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~-----------s~~RRG~pt~h~~~G 112 (309)
T 3pde_A 59 TMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDN-----------DALRRGEPTNHVKFG 112 (309)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC-----------CSEETTEECHHHHHC
T ss_pred HHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhccC-----------CCCCCCCcchhhhcC
Confidence 344445554544 56666777888899999999 873 577888888776653
No 83
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=51.34 E-value=29 Score=28.90 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=35.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
++.+.|.+++....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..+.
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~-----------s~~RRG~pt~h~~~G 108 (284)
T 2ftz_A 57 LGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN-----------ADFRRGXPSCHRTYG 108 (284)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC-----------CSEETTEECHHHHHC
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC-----------CCCCCCCccHHhhcC
Confidence 33444556655556777777788899999999 882 577888888776653
No 84
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=50.91 E-value=18 Score=26.84 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhh
Q 025823 22 IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDL 70 (247)
Q Consensus 22 i~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~ 70 (247)
|++||++-+ ..+.+|++. ....+++.+++++..+.+.-..-+
T Consensus 73 VLaGD~~Sa--~fY~lLa~~-----~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 73 VLSTDVLSA--LFYKYLSQP-----FYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHH--HHHHHTBTT-----BCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHH--HHHHHHcCh-----hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 599998764 457788753 357788999999988877665444
No 85
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=50.77 E-value=14 Score=31.79 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025823 105 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLD 141 (247)
Q Consensus 105 ~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld 141 (247)
+.+++.+.|.+.+....+...-+.+=.++=|.||+.|
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 3345555565555566777778888899999999977
No 86
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=49.85 E-value=19 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 106 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 106 ~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+.+.+.|.+++....+...-+.+=.++=|.||+ .|= +|+|.|++|+-..+
T Consensus 59 l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD~-----------s~~RRG~pt~h~~~ 111 (302)
T 3p8r_A 59 YITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDD-----------DELRRGKPTCHIQF 111 (302)
T ss_dssp HHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHHC-----------CC------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC-----------CCcCCCCcchhhhc
Confidence 3444555666666667777778888999999999 772 46677777764443
No 87
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=49.50 E-value=20 Score=30.15 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+.+.+.|.+++....+...-+.+=.++=|.||+ .|= +|+|.|++|+-..+
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~-----------s~~RRG~pt~h~~~ 105 (304)
T 3lsn_A 54 AACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDD-----------DDLRRGQPTTHKAF 105 (304)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC-----------CCccCCCCchHhhc
Confidence 344455666666667777778888899999999 662 47788888776554
No 88
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=49.05 E-value=34 Score=28.62 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHHH
Q 025823 106 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 168 (247)
Q Consensus 106 ~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 168 (247)
.+++.+.|.+++....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..+.
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~-----------s~~RRG~pt~h~~~G 106 (299)
T 1rqj_A 53 YATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD-----------DDLRRGLPTCHVKFG 106 (299)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CCEETTEECHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcC-----------CCCCCCCCChhhhcC
Confidence 3344455666665556666777777889999999 883 466778877765543
No 89
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=48.24 E-value=26 Score=29.68 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+.+.|.+++....+...-+.|=.+.=|.||+ .|= +|+|.|++|+-..+
T Consensus 56 ~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~-----------s~~RRG~pt~h~~~ 106 (317)
T 4f62_A 56 SAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDN-----------DELRRGKPTCHIQF 106 (317)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC------------------CCHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC-----------CCCcCCCccHHhhc
Confidence 33444555666667777778888899999999 662 57788888776553
No 90
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=48.06 E-value=28 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+++.+.|.+++..-.+...-+.+=.+.-|.||+ .| .+|+|.|++|+-..+
T Consensus 52 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D-----------~s~~RRG~pt~h~~~ 103 (301)
T 1rtr_A 52 LTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD-----------NDDYRRGKLTNHKVY 103 (301)
T ss_dssp HHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc-----------CCCccCCCccHHhhc
Confidence 344444555555455667777788899999999 77 246788888776654
No 91
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=46.88 E-value=39 Score=28.16 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
++.+.|.+++....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..+
T Consensus 63 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD~-----------s~~RRG~pt~h~~~ 113 (293)
T 2j1p_A 63 ACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDN-----------DDLRRGKPTNHKVY 113 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC-----------CCCCCCCCchhhhc
Confidence 34444556555555666667777889999998 662 57788888877655
No 92
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=44.63 E-value=26 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHH
Q 025823 116 LDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 116 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+.+-.+...-+.|=.++=|.||+.| .+|+|.|++|+-..+
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD-----------~s~~RRG~pt~h~~f 127 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID-----------SSDTRRGAPTVHRAV 127 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----------C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC-----------CCCCCCCCcchhHHH
Confidence 45555666667777789999999977 258899999998875
No 93
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=43.89 E-value=25 Score=29.92 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=35.2
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 108 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 108 ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+.+.|.+++....+...-+.|=.+.=|.||+ .|= +|+|.|++|+-..+
T Consensus 61 ~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~-----------~~~RRG~pt~h~~~ 111 (324)
T 3ts7_A 61 TGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDD-----------DDLRRGKPTCHKAY 111 (324)
T ss_dssp HHHHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccC-----------CCccCCCCchhhhc
Confidence 44444666666667777788888899999999 662 57788888866543
No 94
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=43.72 E-value=27 Score=29.50 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHH
Q 025823 117 DKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 117 ~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
+....+...-+.+=.++=|.||+ .|= +|+|.|++|+-..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD~-----------s~~RRG~pt~h~~ 114 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMDN-----------AALRRNHPTLHAK 114 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccCC-----------CcccCCCCchhhh
Confidence 44555666667777899999999 772 4677888876554
No 95
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=41.95 E-value=39 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
+++.+.|.+++....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..+
T Consensus 95 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~-----------s~~RRG~pt~h~~~ 146 (335)
T 2h8o_A 95 ESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDD-----------DDLRRGQPTVHRKF 146 (335)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC-----------CCcCCCCCcHhhhc
Confidence 344445666655556666777778889999999 873 46677777766544
No 96
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=38.30 E-value=22 Score=21.73 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=14.4
Q ss_pred ccCchhhccccchhHHHHHHHHHH
Q 025823 7 RRGQPCWFRVPKVGMIAANDGVLL 30 (247)
Q Consensus 7 RRG~pt~~~~~g~~ai~~gd~l~~ 30 (247)
+...|..|-+||+..++.|..+.+
T Consensus 3 ~k~~p~FHdKYGn~~L~~Ga~FC~ 26 (56)
T 1v54_K 3 QKRAPDFHDKYGNAVLASGATFCV 26 (56)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhcCceeeecchhhhH
Confidence 345678999999865445554443
No 97
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=36.76 E-value=43 Score=27.96 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh--hhccCCCCccCCccchHhhCcccHHHHH
Q 025823 116 LDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 167 (247)
Q Consensus 116 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 167 (247)
.+....+...-+.+=.++=|.||+ .|= +|+|.|++|+-..+
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD~-----------s~~RRG~pt~h~~~ 101 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMDN-----------ADFRRGIPTLHKSY 101 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTC-----------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcccccC-----------CCCCCCCCchhhhc
Confidence 345556667777888899999999 662 47778888875443
No 98
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=36.44 E-value=38 Score=27.98 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=32.5
Q ss_pred HHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 025823 87 LHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFL 140 (247)
Q Consensus 87 ~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~l 140 (247)
.|.-...+|.=.- .-|.+++.+.|.+++....+...-+.+=.+.-|.||+.
T Consensus 33 ~y~~~~gGKrlRP---~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~ 83 (274)
T 3kra_B 33 HHLTFAAPATAAS---TLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHHHSCCCHHH---HHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCcHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3444445554321 12333444556666666677777888889999999998
No 99
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=35.50 E-value=33 Score=29.71 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 117 DKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 117 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..+..
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD~-----------s~~RRG~pt~h~~~G~ 136 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMDS-----------GKFRRGAPCWYIVHGQ 136 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----------CCEETTEECHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccC-----------CCCCCCCccHHhcCCh
Confidence 44445666667777899999999772 5789999998766543
No 100
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=34.52 E-value=48 Score=28.96 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccH
Q 025823 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSW 163 (247)
Q Consensus 121 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tl 163 (247)
.+...-+.|=.++=|.||+.|= +|+|.|++|+
T Consensus 109 ~lA~aiEliH~asLIHDDImD~-----------s~~RRG~pt~ 140 (395)
T 2ihi_A 109 CLAWCIEILQAAFLVADDIMDK-----------GEMRRNKYCW 140 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----------CSEETTEECG
T ss_pred HHHHHHHHHHHHHHHHhccccC-----------CCCCCCCCCc
Confidence 3344556666789999999772 5777888876
No 101
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=33.88 E-value=21 Score=26.32 Aligned_cols=11 Identities=36% Similarity=0.467 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q 025823 126 LVQMGIYFQVQ 136 (247)
Q Consensus 126 g~~lG~afQi~ 136 (247)
|..+|+||||.
T Consensus 149 gnmmgvafqil 159 (206)
T 1s2x_A 149 GNMMGVAFQIL 159 (206)
T ss_dssp HHHHHHHHHHT
T ss_pred Ccchheeeeee
Confidence 77899999994
No 102
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=31.62 E-value=53 Score=27.01 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=34.8
Q ss_pred HHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025823 87 LHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDC 142 (247)
Q Consensus 87 ~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 142 (247)
.|.-..-+|.=. -+-|.+++.+.|.+.+....+...-+.+=.+.-|.||+.|-
T Consensus 38 ~y~~~~gGKrlR---P~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~ 90 (273)
T 3qkc_B 38 HHLTFAAPRTSA---SALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT 90 (273)
T ss_dssp HHHHHHSCCCHH---HHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT
T ss_pred HHHHhCCCCcHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 454445566432 12233445555666666667777888889999999999875
No 103
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=27.51 E-value=72 Score=27.55 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 025823 122 VKDILVQMGIYFQVQDDFLD 141 (247)
Q Consensus 122 l~~~g~~lG~afQi~DD~ld 141 (247)
+...-+.|=.++=|.||+.|
T Consensus 109 ~A~avEliH~asLIHDDImD 128 (374)
T 2qis_A 109 VGWCVELLQAFFLVADDIMD 128 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccccC
Confidence 34455566678899999977
No 104
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=26.36 E-value=23 Score=30.63 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 025823 192 VAKVKELY 199 (247)
Q Consensus 192 ~~~i~~l~ 199 (247)
...+.+.+
T Consensus 290 r~~L~~~~ 297 (368)
T 2q58_A 290 KLKISENY 297 (368)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 33344433
No 105
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=26.03 E-value=80 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 025823 121 EVKDILVQMGIYFQVQDDFLDC 142 (247)
Q Consensus 121 ~l~~~g~~lG~afQi~DD~ld~ 142 (247)
.+...-+.|=.++=|.||+.|=
T Consensus 101 ~~A~aiEliH~asLiHDDImD~ 122 (367)
T 1uby_A 101 AVGWCIELFQAASLVADDIMDQ 122 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcccCC
Confidence 4445555666788999999873
No 106
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.95 E-value=49 Score=21.76 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=14.2
Q ss_pred CchhhccccchhHHHHHHHHHH
Q 025823 9 GQPCWFRVPKVGMIAANDGVLL 30 (247)
Q Consensus 9 G~pt~~~~~g~~ai~~gd~l~~ 30 (247)
..|..|-+||+..++-|..+.+
T Consensus 29 ~~pdFHdKYGn~~L~~Ga~FC~ 50 (80)
T 2y69_K 29 RAPDFHDKYGNAVLASGATFCV 50 (80)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhcCceeeecchhHHH
Confidence 3678999999865444544443
No 107
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=23.65 E-value=63 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHH
Q 025823 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 166 (247)
Q Consensus 121 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 166 (247)
.+...-+.+=.++=|.||+.|= +|+|.|++|+-..
T Consensus 61 ~~A~aiEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~ 95 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVIDK-----------ATMRRKLPSINAL 95 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-----------CCCcCCCccHHHH
Confidence 4555666777899999999772 4667777766544
No 108
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=22.36 E-value=94 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHH
Q 025823 126 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWL 164 (247)
Q Consensus 126 g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp 164 (247)
-+.|=.++=|.||+.|= +|+|.|++|+-
T Consensus 115 vEliH~asLIHDDImD~-----------s~~RRG~Pt~h 142 (390)
T 3dyh_A 115 IEFLQAHYLVEDDIMDN-----------SVTRRGKPCWY 142 (390)
T ss_dssp HHHHHHHHHHHHHHHHT-----------CCEETTEECGG
T ss_pred HHHHHHHHHHHcCCcCC-----------CCCcCCCcccc
Confidence 45666789999999873 45666666653
No 109
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=20.07 E-value=2.4e+02 Score=19.96 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHHHHHhhhhhccCCC
Q 025823 82 KYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDIL-VQMGIYFQVQDDFLDCFGSP 146 (247)
Q Consensus 82 ~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g-~~lG~afQi~DD~ld~~~~~ 146 (247)
.|+..+|-+-+ ||.+-....|.. -.++-...++..+.|...- .+=|++.||...++...|=+
T Consensus 44 ~Pt~~~YnRyi--~t~a~~~~aAak-Nflmd~V~~E~KeaL~ellEE~PGaalqia~~Li~~lGls 106 (114)
T 3fgx_A 44 RPKVSDISRFT--KELNSKPDMAMK-NLTFSCIVPEQEEELRQAAEEFPGLTFNTASRLMEIVGAS 106 (114)
T ss_dssp CCCHHHHHHHH--HHHHHCHHHHHH-HHHHTTBCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHH--HHHhcchhHHHH-HHHHHhcCcccHHHHHHHHHHCccHHHHHHHHHHHHhCCc
Confidence 46888887654 222210111111 1234455666778888887 78899999999999998754
Done!