Query 025823
Match_columns 247
No_of_seqs 224 out of 1304
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 18:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025823.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025823hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fpsa_ a.128.1.1 (A:) Farnesy 100.0 1.1E-53 8.1E-58 376.5 26.5 246 1-247 101-348 (348)
2 d2q80a1 a.128.1.1 (A:6-296) Ge 100.0 1.2E-49 8.9E-54 342.6 17.5 222 1-240 62-287 (291)
3 d1v4ea_ a.128.1.1 (A:) Octopre 100.0 5.3E-44 3.9E-48 305.5 18.9 202 1-228 76-279 (280)
4 d1rqja_ a.128.1.1 (A:) Farnesy 100.0 5.9E-42 4.3E-46 295.5 16.3 202 1-247 89-299 (299)
5 d1rtra_ a.128.1.1 (A:) Farnesy 100.0 6.9E-42 5E-46 293.9 15.8 200 1-245 86-290 (290)
6 d1ezfa_ a.128.1.2 (A:) Squalen 96.5 0.028 2E-06 46.6 13.8 142 55-230 106-247 (333)
7 d1n1ba2 a.128.1.3 (A:271-598) 78.9 14 0.001 29.5 12.3 87 51-145 141-234 (328)
8 d5easa2 a.128.1.3 (A:221-548) 66.1 12 0.00087 29.9 8.3 86 50-143 140-230 (328)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 60.0 34 0.0025 26.3 11.6 50 109-169 31-80 (291)
10 d1ps1a_ a.128.1.4 (A:) Pentale 55.6 40 0.0029 25.7 14.6 104 52-171 134-242 (311)
11 d1v54k_ f.23.5.1 (K:) Mitochon 47.7 6.1 0.00044 22.1 2.3 23 11-33 2-24 (49)
12 d1v4ea_ a.128.1.1 (A:) Octopre 44.0 21 0.0015 27.5 6.0 37 122-169 58-94 (280)
13 d1rqja_ a.128.1.1 (A:) Farnesy 38.2 23 0.0017 27.4 5.5 55 107-170 54-108 (299)
14 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 35.9 8.8 0.00064 26.0 2.0 11 126-136 143-153 (180)
15 d1di1a_ a.128.1.4 (A:) Aristol 29.7 1E+02 0.0076 23.0 17.9 59 83-144 152-212 (300)
16 d1rtra_ a.128.1.1 (A:) Farnesy 29.5 39 0.0028 25.9 5.4 77 84-170 28-105 (290)
17 d1j2jb_ a.7.8.1 (B:) ADP-ribos 21.7 57 0.0042 17.2 4.5 28 174-201 5-32 (41)
No 1
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=100.00 E-value=1.1e-53 Score=376.54 Aligned_cols=246 Identities=48% Similarity=0.850 Sum_probs=221.7
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ ++++||+++..+ ++.++.....+.+...++++.+++++..++.||.+|+.+......+
T Consensus 101 ~D~~~~RRG~pt~~~~~g~~~ail~gd~ll~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~ 179 (348)
T d1fpsa_ 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESS-VYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVD 179 (348)
T ss_dssp TTTCCEETTEECTTTSTTTTTTHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCC
T ss_pred ccCCccccccchhhhhccccHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHhhhhhhhHHHHHHHHHHhhhcccccc
Confidence 79999999999999999998 799999998653 4667665444445567899999999999999999999887765555
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACAL-LMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga-~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~ 158 (247)
...+++++|++|+.+|||+|||..|+.+++ ++++.+++..+.++.||.++|+||||+||++|++|+++.+||+|+||++
T Consensus 180 ~~~~t~~~Y~~~i~~KTa~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~e 259 (348)
T d1fpsa_ 180 LSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQD 259 (348)
T ss_dssp SSSCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSS
T ss_pred ccccCHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccccchhhccccccccchHHHHHHHHhhhhcchhccCcccccccC
Confidence 555799999999999999987666665555 5566788899999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSF 238 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l 238 (247)
||+|||++++++.+++++++.|..++++.+++++.+++++++.+|++++++++++.+.++|.+.++.+|+++.++.|..|
T Consensus 260 gK~Tlpii~al~~~~~~~r~~l~~~~~~~~~e~i~~v~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l 339 (348)
T d1fpsa_ 260 NKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGL 339 (348)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCSSSCTHHHHHH
T ss_pred CccHHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998899999999
Q ss_pred HHHHHhccC
Q 025823 239 LAKIYKRQK 247 (247)
Q Consensus 239 ~~~~~~R~~ 247 (247)
++++++|+|
T Consensus 340 ~~~i~~R~k 348 (348)
T d1fpsa_ 340 AQKIYKRQK 348 (348)
T ss_dssp HHHHSCCCC
T ss_pred HHHHHhCCC
Confidence 999999986
No 2
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.2e-49 Score=342.59 Aligned_cols=222 Identities=20% Similarity=0.152 Sum_probs=186.2
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||+|++||++ ||++||++++. +++++.+.. ...+.+.+++++..++.||.+|+.+..+..
T Consensus 62 ~D~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~--a~~~l~~~~-----~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~-- 132 (291)
T d2q80a1 62 EDNSKLRRGFPVAHSIYGIPSVINSANYVYFL--GLEKVLTLD-----HPDAVKLFTRQLLELHQGQGLDIYWRDNYT-- 132 (291)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred ccCcccccCCCccccccchhhhhhHHHHHHHH--HHHhhhhhh-----hhHHHHHHHHHHHHhHhccccccccccccc--
Confidence 69999999999999999998 89999999965 678887642 235778889999999999999998866543
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
.+++++|++|+.+|||+| |++||.+|++++|.+++ +++||.++|+||||+||++|++++++.+|| .|+||++
T Consensus 133 --~~s~~~y~~ii~~KT~~L-f~~~~~~ga~~~~~~~~----l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~ 205 (291)
T d2q80a1 133 --CPTEEEYKAMVLQKTGGL-FGLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE 205 (291)
T ss_dssp --CCCHHHHHHHHHHHHHHH-HHHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHH
T ss_pred --cCCHHHHHHHHHhccchh-hHhhhhhhhhhcccchh----hHHHHHHHHHHHHHHHHhhhhccchhhccccccchhcc
Confidence 269999999999999999 99999999999998753 789999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCC--CChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGK--VDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK 236 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~--~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~ 236 (247)
||+|||++++++..+. +.++..++.+ .+++.+.++.+++.++|+++++++.++.|.++|++.|+.+|+++.+..|.
T Consensus 206 gK~Tlpvi~al~~~~~--~~~l~~il~~~~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~~~~~L~ 283 (291)
T d2q80a1 206 GKFSFPTIHAIWSRPE--STQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALV 283 (291)
T ss_dssp TCCCHHHHHHHHHSTT--CCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCcHHHHHHHHhccc--HHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999987543 3345555432 35778899999999999999999999999999999999999887666655
Q ss_pred HHHH
Q 025823 237 SFLA 240 (247)
Q Consensus 237 ~l~~ 240 (247)
....
T Consensus 284 ~~L~ 287 (291)
T d2q80a1 284 KHLS 287 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 3
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=5.3e-44 Score=305.51 Aligned_cols=202 Identities=20% Similarity=0.191 Sum_probs=175.3
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD 79 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d 79 (247)
||+|++|||+||||++||++ +|++||++++. ++.+++... ...+.+.+++++..++.||.+|+.+....
T Consensus 76 ~D~s~~RRG~pt~h~~~g~~~ail~gd~l~~~--a~~~l~~~~-----~~~~~~~l~~~~~~~~~Gq~~d~~~~~~~--- 145 (280)
T d1v4ea_ 76 IDGARFRRGKETINFMYGDKAAVAAGDLVLVS--AFHTVEEIG-----NNKLRRAFLNVIGKMSEAELIEQLSRYKP--- 145 (280)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHTTSC---
T ss_pred hhhcccccccchhhhccchhhhhhhHHHHHHh--hhhcccccc-----cccccccchhhcccchhHHHHHHHhccCC---
Confidence 69999999999999999998 89999999965 678887542 35778889999999999999998776542
Q ss_pred CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823 80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED 158 (247)
Q Consensus 80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~ 158 (247)
+++++|++|+.+|||+| |.+||.+|++++|...+ .+++||.++|+||||+||++|++|++ .+|| .|+||++
T Consensus 146 ---~t~~~y~~~i~~KT~~l-f~~~~~~ga~l~g~~~~---~l~~~g~~lG~afQi~DD~ld~~~~~-~~GK~~g~Dl~~ 217 (280)
T d1v4ea_ 146 ---ITKEEYLRIVEGKSGAL-FGLALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 217 (280)
T ss_dssp ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTT
T ss_pred ---CCHHHHHHHHHhccccH-HHHHHHHHHHHccccHH---HHHHHHHHHHHHHHHHHhhccccchh-hhcccchhhHhC
Confidence 69999999999999999 99999999999997654 58999999999999999999999876 4899 9999999
Q ss_pred CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC
Q 025823 159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT 228 (247)
Q Consensus 159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~ 228 (247)
||+|||++++++.++ +.++.+. .+++..+.++++++|+++++++.++.+.+.|...+.-+|+
T Consensus 218 gK~T~p~i~al~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~l~d 279 (280)
T d1v4ea_ 218 GVASFPLVTAMEKFP-EARQMFE-------NRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRD 279 (280)
T ss_dssp TTCCHHHHHHHHHCH-HHHHHHH-------TTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred CCccHHHHHHHHhCH-HHHHHHH-------HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999864 3343332 2467889999999999999999999999999877766664
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.9e-42 Score=295.47 Aligned_cols=202 Identities=23% Similarity=0.254 Sum_probs=161.7
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH-----HHHHhhHHHhhhcccc
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV-----EFQTASGQMIDLITTI 74 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~GQ~~d~~~~~ 74 (247)
+|++++|||+||+|++||++ ||++||++++. ++.++++...+.......+.++.+. +..+++||.+|+.+..
T Consensus 89 ~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~--a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~GQ~ldl~~~~ 166 (299)
T d1rqja_ 89 MDDDDLRRGLPTCHVKFGEANAILAGDALQTL--AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG 166 (299)
T ss_dssp TTCCCEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred hhhhhcccccccceeeeCcchhhhhcchHHHH--HHHHHHhCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 37779999999999999997 89999999954 7888887533222233444444332 3468999999998765
Q ss_pred cCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-c
Q 025823 75 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-V 152 (247)
Q Consensus 75 ~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~a-g~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~ 152 (247)
.. +++++|.+|+.+|||+| |.+++.+|+.++ +.+++..+.+++||.++|+||||+||++|++|+++.+|| .
T Consensus 167 ~~------~~~~~~~~i~~~KT~~l-~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~~~~~GK~~ 239 (299)
T d1rqja_ 167 KH------VPLDALERIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 239 (299)
T ss_dssp TC------CCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCT
T ss_pred Cc------ccHHHHHHHHHHHHhhH-HHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCch
Confidence 42 58999999999999999 999999988765 466667788999999999999999999999999999999 9
Q ss_pred cchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHH
Q 025823 153 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEV 231 (247)
Q Consensus 153 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~-~~~ 231 (247)
|+|+++||+|||++++++.+.+. ++++.+++.+.|+.++. +..
T Consensus 240 g~Dl~egK~Tlp~i~~le~a~~~------------------------------------~~~~~~~~~~~l~~l~~~~~~ 283 (299)
T d1rqja_ 240 GADQQLGKSTYPALLGLEQARKK------------------------------------ARDLIDDARQSLKQLAEQSLD 283 (299)
T ss_dssp THHHHHTCCCHHHHHCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHTTTCC
T ss_pred hhHHHCCChhHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHhhhccccc
Confidence 99999999999999998864332 23344556666666653 344
Q ss_pred HHHHHHHHHHHHhccC
Q 025823 232 QAVLKSFLAKIYKRQK 247 (247)
Q Consensus 232 ~~~L~~l~~~~~~R~~ 247 (247)
++.|..+++++++|+|
T Consensus 284 ~~~L~~l~~~i~~R~K 299 (299)
T d1rqja_ 284 TSALEALADYIIQRNK 299 (299)
T ss_dssp CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6889999999999986
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=6.9e-42 Score=293.86 Aligned_cols=200 Identities=21% Similarity=0.300 Sum_probs=153.4
Q ss_pred CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCc-hHHHHHHHHHHH--HHHHhhHHHhhhcccccC
Q 025823 1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKP-YYVDLLDLFNEV--EFQTASGQMIDLITTIEG 76 (247)
Q Consensus 1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~GQ~~d~~~~~~~ 76 (247)
||++++|||+||+|++||+. +|++||++++. ++.+++....... ....+...++.+ ...++.||.+|+.+....
T Consensus 86 ~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~--a~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~GQ~~Dl~~~~~~ 163 (290)
T d1rtra_ 86 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTK--AFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQP 163 (290)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHH--HHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhcchhhHHHhhhhHHHHcCcchhHH--HHHHHHhCCCcchhhHhHHHHHHHHHHhHHHHHHhHHHHHHhcccC
Confidence 59999999999999999998 89999999954 6788876422211 112233333222 245789999999876542
Q ss_pred CccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccch
Q 025823 77 EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTD 155 (247)
Q Consensus 77 ~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~D 155 (247)
++++.|..|+.+|||+| |.+++.+|+++++++++..+.+++||.++|+||||+||++|++|+++.+|| .|+|
T Consensus 164 ------~~~~~~~~i~~~KT~~l-~~~~~~~~a~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~g~~~~~GK~~g~D 236 (290)
T d1rtra_ 164 ------IDLETLEMIHKTKTGAL-LTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSD 236 (290)
T ss_dssp ------CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred ------CCHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccCcccH
Confidence 58999999999999999 999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 025823 156 IEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVL 235 (247)
Q Consensus 156 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L 235 (247)
|++||+|||++++++.+. +.+..+.+++.+.|..++....++.|
T Consensus 237 i~~gK~T~p~i~a~~~a~------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~l 280 (290)
T d1rtra_ 237 LENNKSTYVSLLGKDGAE------------------------------------DKLTYHRDAAVDELTQIDEQFNTKHL 280 (290)
T ss_dssp -----CCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHTSCTTSCCHHH
T ss_pred hhcCCccHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHhCcCchhHHHH
Confidence 999999999999987531 22445666777888888876666789
Q ss_pred HHHHHHHHhc
Q 025823 236 KSFLAKIYKR 245 (247)
Q Consensus 236 ~~l~~~~~~R 245 (247)
.++++++++|
T Consensus 281 ~el~d~i~~R 290 (290)
T d1rtra_ 281 LEIVDLFYSR 290 (290)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcC
Confidence 9999999987
No 6
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.52 E-value=0.028 Score=46.64 Aligned_cols=142 Identities=8% Similarity=-0.025 Sum_probs=87.7
Q ss_pred HHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 025823 55 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQ 134 (247)
Q Consensus 55 ~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQ 134 (247)
+......|..|+..+..... .|++++..-.++=-|.. -.+.+.+-.. .+......+....++.++|+|+|
T Consensus 106 i~~~~~~m~~gm~d~~~~~~--------~t~~dL~~Ycy~VAG~V-G~~l~~l~~~-~~~~~~~~~~~~~~A~~lG~AlQ 175 (333)
T d1ezfa_ 106 IADICRRMGIGMAEFLDKHV--------TSEQEWDKYCHYVAGLV-GIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQ 175 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSCC--------CSHHHHHHHHHHHTHHH-HHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHccCcC--------CCHHHHHHHHHHHHHHH-HHHHHHHhCc-CCCccccHHHHHHHHHHHHHHHH
Confidence 34445566777776664422 37777766555555554 3333333222 23233344567789999999999
Q ss_pred HHhhhhhccCCCCccCCccchHhhCcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHH
Q 025823 135 VQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKE 214 (247)
Q Consensus 135 i~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~ 214 (247)
+.|=+.|+. .|+..|++-||.=..-+..-.. ..+.. ++..+.+... ++.....++.
T Consensus 176 ltNIlRDi~----------eD~~~gR~YlP~e~l~~~g~~~-----~dl~~---~~~~~~~~~~------~~~l~~~A~~ 231 (333)
T d1ezfa_ 176 KTNIIRDYL----------EDQQGGREFWPQEVWSRYVKKL-----GDFAK---PENIDLAVQC------LNELITNALH 231 (333)
T ss_dssp HHHHHHTHH----------HHHHHTCCCSCHHHHTTTCSSG-----GGGGS---GGGHHHHHHH------HHHHHHHHHT
T ss_pred HHHHHHhhH----------HHHhCCcEECCHHHHHHcCCCH-----HHHHh---ccchHHHHHH------HHHHHHHHHH
Confidence 999998885 6899999999976554432211 11222 2222333332 3445567899
Q ss_pred HHHHHHHHhhcCCChH
Q 025823 215 SYEKLTKSIEAHPTKE 230 (247)
Q Consensus 215 ~~~~A~~~l~~lp~~~ 230 (247)
|+..|++.+..+|...
T Consensus 232 ~~~~a~~y~~~lp~~~ 247 (333)
T d1ezfa_ 232 HIPDVITYLSRLRNQS 247 (333)
T ss_dssp THHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHCCchh
Confidence 9999999999999753
No 7
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=78.90 E-value=14 Score=29.49 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHc-C---CChHHHHHHH---
Q 025823 51 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-G---ENLDKHVEVK--- 123 (247)
Q Consensus 51 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~a-g---~~~~~~~~l~--- 123 (247)
++..+.++...++.+=+.+..|.....+ ||.++|++...-=+|.. .+.+.+.++ | .+++..+.+.
T Consensus 141 ~~~~lk~~w~~l~~ayl~EakW~~~g~v----Pt~eEYl~~~~vS~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~p 212 (328)
T d1n1ba2 141 CLQYLRKSVVDLVEAYFHEAKWYHSGYT----PSLDEYLNIAKISVASP----AIISPTYFTFANASHDTAVIDSLYQYH 212 (328)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHTCHH----HHHHHHHTTSTTCCCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHhhceehhhHH----HHHHHHHHhCCCccchHHHHHHHhccH
Confidence 3445566666777777777778776654 79999998876655543 122223322 1 2233334333
Q ss_pred HHHHHHHHHHHHHhhhhhccCC
Q 025823 124 DILVQMGIYFQVQDDFLDCFGS 145 (247)
Q Consensus 124 ~~g~~lG~afQi~DD~ld~~~~ 145 (247)
++-...++..-+.||+..+..+
T Consensus 213 ~~~~~~~~i~RL~nDi~~~~~E 234 (328)
T d1n1ba2 213 DILCLAGIILRLPDDLGTSYFE 234 (328)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhhhhhHHHH
Confidence 4777899999999999988753
No 8
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=66.12 E-value=12 Score=29.87 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHc--CCChHHHH---HHHH
Q 025823 50 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA--GENLDKHV---EVKD 124 (247)
Q Consensus 50 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~a--g~~~~~~~---~l~~ 124 (247)
.++..+.++...++.+=..+..|.....+ ||.++|+++...-+|.. ++.+...++ ...++... ...+
T Consensus 140 ~~~~~l~~~w~~~~~~~l~EA~W~~~g~v----Pt~eEYl~~~~~s~~~~----~l~~~~~~~~g~~~~e~~~~~~~~p~ 211 (328)
T d5easa2 140 HIVCHAIERMKEVVRNYNVESTWFIEGYT----PPVSEYLSNALATTTYY----YLATTSYLGMKSATEQDFEWLSKNPK 211 (328)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHTGGGCHH----HHHHHHHHTCTTCCHHHHHHHHTCCH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhCCCC----CChHhhhcceeeeehHH----HHHHHHHHhCCCCcHHHHHhcccchH
Confidence 34556666667777777777778777654 79999999876655544 222233222 23444332 2337
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 025823 125 ILVQMGIYFQVQDDFLDCF 143 (247)
Q Consensus 125 ~g~~lG~afQi~DD~ld~~ 143 (247)
+....+...-+.||+..+.
T Consensus 212 l~~~~~~i~RL~NDi~s~~ 230 (328)
T d5easa2 212 ILEASVIICRVIDDTATYE 230 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 7888999999999999886
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.96 E-value=34 Score=26.29 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=37.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 109 LLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 109 a~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+.+.|.+++.+..+...-+.+=.|+=|.||+.|= +++|.|++|+-..+.-
T Consensus 31 ~~~~~~~~~~~~~~a~aiEllH~asLihDDi~D~-----------~~~RRg~pt~~~~~G~ 80 (291)
T d2q80a1 31 NHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDN-----------SKLRRGFPVAHSIYGI 80 (291)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHHCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhcccccC-----------cccccCCCccccccch
Confidence 3344667777777777778888899999999873 5778999997665543
No 10
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}
Probab=55.58 E-value=40 Score=25.70 Aligned_cols=104 Identities=6% Similarity=-0.206 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhHHHhhhcccccCCccCCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHH--HHHHHHH
Q 025823 52 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHV--EVKDILV 127 (247)
Q Consensus 52 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~d~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~--~l~~~g~ 127 (247)
...+.+.+.....|...+..+...... .+|.++|+.+-..-+|.. +.+ .+.-...| .+++..+ .+..+-.
T Consensus 134 ~~r~~~~~~~~~~~~~~e~~~r~~~~~---~ps~~eYl~~R~~~~g~~-~~~--~l~~~~~g~~lp~~v~~~~~~~~l~~ 207 (311)
T d1ps1a_ 134 CARSARHWRNYFDGYVDEAESRFWNAP---CDSAAQYLAMRRHTIGVQ-PTV--DLAERAGRFEVPHRVFDSAVMSAMLQ 207 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHTCHH-HHH--HHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC---CCCHHHHHHHHHhcccHH-HHH--HHHHHHcCCCCCHHHHhhcchHHHHH
Confidence 344666667778888888877532210 158999999977766754 322 22222223 3444222 4677788
Q ss_pred HHHHHHHHHhhhhhccCCCCccCCccchHhhCcc-cHHHHHHHhh
Q 025823 128 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 171 (247)
Q Consensus 128 ~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 171 (247)
..+...=+.|||..|-- +..+|.. ++..++.-+.
T Consensus 208 ~~~~~~~l~NDi~S~~k----------E~~~g~~~N~V~vlm~~~ 242 (311)
T d1ps1a_ 208 IAVDVNLLLNDIASLEK----------EEARGEQNNMVMILRREH 242 (311)
T ss_dssp HHHHHHHHHHHHHTHHH----------HHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHh----------hhccCCcCcHHHHHHHcc
Confidence 88888889999998842 2333433 6666665554
No 11
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.71 E-value=6.1 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=16.0
Q ss_pred hhhccccchhHHHHHHHHHHHHH
Q 025823 11 PCWFRVPKVGMIAANDGVLLRNH 33 (247)
Q Consensus 11 pt~~~~~g~~ai~~gd~l~~~~~ 33 (247)
|..|-+||+..++.|+.+.+...
T Consensus 2 p~FHdKYGn~vL~~Ga~fc~avW 24 (49)
T d1v54k_ 2 PDFHDKYGNAVLASGATFCVAVW 24 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCcEEEecccchhhhhh
Confidence 78899999875566666554433
No 12
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=44.03 E-value=21 Score=27.51 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHH
Q 025823 122 VKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 169 (247)
Q Consensus 122 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 169 (247)
+...-+.+=.++=|.||+.|= +++|.|++|+-..+.-
T Consensus 58 ~AaaiEliH~asLIhDDi~D~-----------s~~RRG~pt~h~~~g~ 94 (280)
T d1v4ea_ 58 SLAALELVHLASLLHDDVIDG-----------ARFRRGKETINFMYGD 94 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHHCH
T ss_pred HHHHHHHHHHHHHHhhhHhhh-----------cccccccchhhhccch
Confidence 333445666788899999882 4668888887765443
No 13
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=38.25 E-value=23 Score=27.43 Aligned_cols=55 Identities=13% Similarity=-0.013 Sum_probs=39.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCcccHHHHHHHh
Q 025823 107 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 170 (247)
Q Consensus 107 ~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 170 (247)
+.+.+.|.+++.+..+...-+.+=.|.=|.||+.|.-. +++|.|++|+-..+.-.
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEllH~asLiHDDI~d~d~---------~~~RRG~pt~h~~~G~~ 108 (299)
T d1rqja_ 54 ATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD---------DDLRRGLPTCHVKFGEA 108 (299)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC---------CCEETTEECHHHHHCHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHccchhhhh---------hhcccccccceeeeCcc
Confidence 34445567777666666677777778889999998532 46788999887665543
No 14
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=35.88 E-value=8.8 Score=26.03 Aligned_cols=11 Identities=36% Similarity=0.467 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q 025823 126 LVQMGIYFQVQ 136 (247)
Q Consensus 126 g~~lG~afQi~ 136 (247)
|..+|+||||.
T Consensus 143 gnmmgvafqil 153 (180)
T d1s2xa_ 143 GNMMGVAFQIL 153 (180)
T ss_dssp HHHHHHHHHHT
T ss_pred Cccceeeeeee
Confidence 77899999994
No 15
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]}
Probab=29.74 E-value=1e+02 Score=22.99 Aligned_cols=59 Identities=10% Similarity=0.002 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhchhhhhhHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 025823 83 YSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHVEVKDILVQMGIYFQVQDDFLDCFG 144 (247)
Q Consensus 83 ~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 144 (247)
++.++|+.+=..-+|.. +.++ +.-...| -+++....+..+....+..-=+.|||..|--
T Consensus 152 psl~eYl~~R~~~~g~~-~~~~--l~e~~~g~~lp~~~~~~~~~l~~~~~~~~~l~NDl~S~~K 212 (300)
T d1di1a_ 152 HELGHYLEYREKDVGKA-LLSA--LMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDK 212 (300)
T ss_dssp CSHHHHHHHHHTCHHHH-HHHH--HHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHhcccHH-HHHH--HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 69999998866666654 3222 2222223 4555666677777777777778999999853
No 16
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.48 E-value=39 Score=25.92 Aligned_cols=77 Identities=12% Similarity=-0.082 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhchhhhhhHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhhCccc
Q 025823 84 SLPLHRRIVQYKTAYYSFYLPV-ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCS 162 (247)
Q Consensus 84 s~~~y~~i~~~KTa~ltf~~~~-~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~gk~T 162 (247)
...+...-+-.--|.. ++-.+ .+++.+.|.+++..-.+...-+.+=.|+=|.||+.|.=. +++|.|++|
T Consensus 28 ~l~~~~~y~l~~gGKr-~Rp~l~~~~~~~~~~~~~~~~~~A~avEllH~asLIHDDI~d~D~---------~~~RRg~pt 97 (290)
T d1rtra_ 28 QLEESMLYSLNAGGKR-IRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDN---------DDYRRGKLT 97 (290)
T ss_dssp SHHHHHHHHHTSCCCC-HHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTC---------CSEETTEEC
T ss_pred hHHHHHHhHhcCCcch-HhHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHhcchhhhhh---------hhhhhcchh
Confidence 3444443232233554 44332 233344566666555666666777788999999987532 356788888
Q ss_pred HHHHHHHh
Q 025823 163 WLVVKALE 170 (247)
Q Consensus 163 lp~l~al~ 170 (247)
+-..+...
T Consensus 98 ~~~~~g~~ 105 (290)
T d1rtra_ 98 NHKVYGEW 105 (290)
T ss_dssp HHHHHCHH
T ss_pred hHHHhhhh
Confidence 77665544
No 17
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.68 E-value=57 Score=17.20 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCCChHhHHHHHHHHHH
Q 025823 174 EEQKKLVHENYGKVDPACVAKVKELYKT 201 (247)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~i~~l~~~ 201 (247)
++..+.|..++.+..|+++...-.+++.
T Consensus 5 EeksklL~~LLkS~~PeDLqaANrLIK~ 32 (41)
T d1j2jb_ 5 EEKSKMLARLLKSSHPEDLRAANKLIKE 32 (41)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445567778887788888776666643
Done!