RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025823
(247 letters)
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 123 bits (309), Expect = 4e-34
Identities = 122/248 (49%), Positives = 170/248 (68%), Gaps = 1/248 (0%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
MD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+LF + +
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPV-ACALLMAGENLDKH 119
QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPV A ++ ++ ++H
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+ EQ++L
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQL 280
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + + +
Sbjct: 281 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 340
Query: 240 AKIYKRQK 247
KIYKRQK
Sbjct: 341 QKIYKRQK 348
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 54.6 bits (130), Expect = 2e-09
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 13/189 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
+ K G A G L+ IL + + D + + +E+
Sbjct: 87 PAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELA 146
Query: 60 FQT-----ASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE 114
+ GQ +DL + + L RI ++KT AL +
Sbjct: 147 SASGIAGMCGGQALDL------DAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDK 200
Query: 115 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIG-KVGTDIEDYKCSWLVVKALELCN 173
+ +G+ FQVQDD LD G +G + G D + K ++ + LE
Sbjct: 201 GRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQAR 260
Query: 174 EEQKKLVHE 182
++ + L+ +
Sbjct: 261 KKARDLIDD 269
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 45.8 bits (107), Expect = 1e-06
Identities = 19/176 (10%), Positives = 51/176 (28%)
Query: 12 CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLI 71
V + + + + +
Sbjct: 71 LHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGK 130
Query: 72 TTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGI 131
+ + P+ + S L L A + ++ ++ V +G
Sbjct: 131 MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGT 190
Query: 132 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV 187
+Q+ DD +D G ++ D+++ S+ +V A+E E ++ + ++ +
Sbjct: 191 IYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGL 246
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 42.8 bits (99), Expect = 2e-05
Identities = 36/245 (14%), Positives = 68/245 (27%), Gaps = 16/245 (6%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
D S RRG P + + + + L+ L +E
Sbjct: 62 EDNSKLRRGFPVAHSIYGIPSVINSA----NYVYFLGLEKVLTLDHPDAVKLFTRQLLEL 117
Query: 61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 120
G I + A+ + D
Sbjct: 118 HQGQGLDIYWRDNYTCPTEEE-----------YKAMVLQKTGGLFGLAVGLMQLFSDYKE 166
Query: 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKL 179
++K +L +G++FQ++DD+ + K D+ + K S+ + A+ E +
Sbjct: 167 DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQ 226
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
+ + + KE K K I+A L L
Sbjct: 227 NILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHL 286
Query: 240 AKIYK 244
+K++K
Sbjct: 287 SKMFK 291
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 40.4 bits (93), Expect = 1e-04
Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 10/185 (5%)
Query: 1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV-- 58
MD RRG+ +V LL I + + +L +
Sbjct: 86 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASG 145
Query: 59 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK 118
GQM+D+ + + DL ++ V A +A +
Sbjct: 146 HVGMVGGQMLDMQSEGQ-PIDLETL------EMIHKTKTGALLTFAVMSAADIANVDDTT 198
Query: 119 HVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQK 177
++ +G+ FQ++DD LDC+G +GK VG+D+E+ K +++ + + ++
Sbjct: 199 KEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLT 258
Query: 178 KLVHE 182
Sbjct: 259 YHRDA 263
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 28.2 bits (62), Expect = 0.73
Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 91 IVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIG 150
+++ + + A + + + + P I
Sbjct: 79 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK 138
Query: 151 KVGTDIEDYKCSWLVVKALELCNEEQKKL 179
W +V+ L + + ++K+
Sbjct: 139 DKT---------WKIVEGLPINDFSREKM 158
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 27.4 bits (61), Expect = 1.6
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 106 ACALLMAGENLDKHVEVKDILVQMGI--YFQVQDDFLDCFGSPEVIGKVGT 154
A +++ + L K + D GI Y + F SP G V T
Sbjct: 61 ADPRVLSDQFLQKIAALADAFRPYGIKMYLSI------NFNSPRAFGDVDT 105
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 26.5 bits (58), Expect = 2.2
Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 71 ITTIEGEKDLSKYSLPLHRRIVQ-YKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQM 129
+ +GE D + + K + + P M ++ E+ + +
Sbjct: 40 LADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMIL 99
Query: 130 GIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDP 189
+ +++ G P +GK G ++ D ++L +EE +KL +
Sbjct: 100 QGEYGIENVA---VGVPAKLGKNGAEVAD----------IKLSDEEIEKLRN-------- 138
Query: 190 ACVAKVKELYKTL 202
++E + L
Sbjct: 139 -SAKILRERLEEL 150
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and
4 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.5 bits (56), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 14 FRVPKVGMIA---ANDGVLLRNHISRILKNH 41
F+V KVG IA DG + R+ R+++
Sbjct: 15 FKVSKVGTIAGCYVTDGKITRDSKVRLIRQG 45
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 220 TKSIEAHPTKEVQAVLKSFLAK 241
I A PTK +Q L+ LAK
Sbjct: 29 VVRISAKPTKRLQEALQPILAK 50
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 26.3 bits (57), Expect = 4.0
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 2 DGSHTRRGQPCWFRVPKVGMIAA----NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNE 57
D G P + PKV + + ++ I ++ +
Sbjct: 184 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 243
Query: 58 VEFQTASGQMIDLITTIEGEK 78
V+ + +G E
Sbjct: 244 VDSISCTGMATICNMGAEIGA 264
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium
graveolens) [TaxId: 4045]}
Length = 153
Score = 25.2 bits (55), Expect = 5.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 186 KVDPACVAKVKELYKTLDLEGAF---VEYEKESYEKLTKSIEAH 226
D + K ++ T ++Y E L K++EA+
Sbjct: 106 TADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAY 149
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 24.9 bits (54), Expect = 8.0
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 114 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK 160
+ + +++D+ + GI +++ + S V V +
Sbjct: 1 QTIRSASDIRDVFINAGIK---GEEYDAAWNSFVVKSLVAQQEKAAA 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 942,703
Number of extensions: 44655
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 26
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)