BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025824
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/247 (89%), Positives = 239/247 (96%)
Query: 1 MASNAEDQQNQQGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNI 60
MA+N + +Q + GRHQEVGHKSLLQSDALYQYILETSV+PRE E+MKELRE+TAKHPWNI
Sbjct: 1 MATNEDQKQTESGRHQEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNI 60
Query: 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120
MTTSADEGQFL+MLLKL+NAKNTMEIGVYTGYSLLATALA+P+DGKILAMDIN+ENYELG
Sbjct: 61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120
Query: 121 LPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELV 180
LPVI+KAGV HKIDFREGPALPVLD +I+DEKNHGS+DFIFVDADKDNYLNYHKRLI+LV
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180
Query: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGV 240
KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALA DPRIEICMLPVGDG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240
Query: 241 TICRRIK 247
TICRRIK
Sbjct: 241 TICRRIK 247
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 280 bits (716), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 135/231 (58%), Positives = 179/231 (77%), Gaps = 1/231 (0%)
Query: 16 QEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLL 75
++V + LLQS+ L QYIL TSVYPRE +KELRE HP + M+TS GQ ++ +L
Sbjct: 7 KQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL 66
Query: 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135
KLVNAK T+E+GV+TGYSLL TAL++PDDGKI A+D +RE YE+GLP I+KAGV HKI+F
Sbjct: 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126
Query: 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195
E A+ LD L+Q +++ GS+DF FVDADK NY+ YH+RL++LVKVGG++ YDNTLW G
Sbjct: 127 IESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGG 186
Query: 196 SVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 246
+ VA P++ + +++ R+ V+ELNK LAADPRIEI LP+GDG+T CRR+
Sbjct: 187 T-VAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL 236
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 9/226 (3%)
Query: 21 KSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNA 80
K L + LY+Y+L+ S+ RE ++ LR+ T+ M + ++ QF+ ML++L A
Sbjct: 4 KHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRA 61
Query: 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140
K +E+G +TGYS LA +LALPDDG+++ DIN + P ++A HKI R GPA
Sbjct: 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121
Query: 141 LPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAP 200
L L L+ + H FDFIF+DADK NYLNY++ ++LV G+I DN W+G V+ P
Sbjct: 122 LDTLHSLLNEGGEH-QFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDP 180
Query: 201 PDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 246
D + R+ + +LN+ + D R+ + +L + DG+ + + I
Sbjct: 181 NDTSGQT-----RE-IKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 124/218 (56%), Gaps = 13/218 (5%)
Query: 28 ALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIG 87
+LY Y+ S+ + + +LR TA P M S ++ QFL +L+ L AK +EIG
Sbjct: 23 SLYSYL--QSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIG 80
Query: 88 VYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147
V+ GYS LA AL LP DG+I+A D + + QKAGVA KI R GPAL L+ L
Sbjct: 81 VFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL 140
Query: 148 IQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSV--VAPPDAPL 205
Q K FD IF+DADK NY Y++ + L++ GG++ DN LW+G V V P +A
Sbjct: 141 TQG-KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQT 199
Query: 206 RKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTIC 243
+ ++ RD LA D R+ I ++P+GDG+T+
Sbjct: 200 QVLQQFNRD--------LAQDERVRISVIPLGDGMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 129/218 (59%), Gaps = 9/218 (4%)
Query: 29 LYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGV 88
L+QY+L S+ RE +++ LR LT + P + ++ Q L L +L+ AK +++G
Sbjct: 21 LWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGT 78
Query: 89 YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI 148
+TGYS LA ALALP DG+++ +++ + ELG P+ ++A HKID R PAL LD L+
Sbjct: 79 FTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL 138
Query: 149 QDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKY 208
G+FD VDADK+N Y++R ++L++ GG++ LW G V+ PP +
Sbjct: 139 A-AGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAA- 196
Query: 209 VRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 246
+ V LN+ + D R+ I +LP+GDG+T+ +I
Sbjct: 197 -----ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 134/243 (55%), Gaps = 28/243 (11%)
Query: 18 VGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKL 77
+ K++ +++L +YI SV REP+S +LR+ T M S +EGQFLN+L K+
Sbjct: 1 MSRKNISLTESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKI 58
Query: 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137
AK +EIG +TGYS L A ALP+DGKIL D++ E + ++ G+ +KI +
Sbjct: 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL 118
Query: 138 GPALPVLDLLIQDEK----------NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIG 187
G AL L +LI + S D F+DADK+NY NY+ +++L+K GG++
Sbjct: 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLI 178
Query: 188 YDNTLWNGSVV-----APPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTI 242
DN LW+GSV P +RK+ N+ + D +++ ++P+ DGV++
Sbjct: 179 ADNVLWDGSVADLSHQEPSTVGIRKF-----------NELVYNDSLVDVSLVPIADGVSL 227
Query: 243 CRR 245
R+
Sbjct: 228 VRK 230
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 123/219 (56%), Gaps = 12/219 (5%)
Query: 29 LYQYILETSVYPREPESMKELRELTAKH-PWNIMTTSADEGQFLNMLLKLVNAKNTMEIG 87
LYQY+L+ S+ REP + ELRE T + T+ ++ Q L +L+KL AK ++IG
Sbjct: 15 LYQYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVIDIG 72
Query: 88 VYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147
+TGYS +A LALP DG ++ D++ ++ L +KAG++ KI R PA L L
Sbjct: 73 TFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL 132
Query: 148 IQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPD-APLR 206
I +D I++DADK N Y++ ++L++ GG+I DN L G V + +
Sbjct: 133 IH-AGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN 191
Query: 207 KYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRR 245
+ +R + N+ + D R++ ++P+GDG+T+ R+
Sbjct: 192 QLIRLF-------NQKVYKDERVDXILIPIGDGLTLARK 223
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 15/185 (8%)
Query: 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPV 123
+A++GQFL +L++L AK +EIG GYS + A LP DG++L ++ + + ++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 124 IQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVG 183
+Q AGV ++ REGPAL L+ L + +FD IF+DADK N +Y + + + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 184 GVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICML-PVG----D 238
+I DN + +G VV P A R V+ R F+ + A+PR+ L VG D
Sbjct: 164 TLIIGDNVVRDGEVVNPQSADER--VQGVRQFI----EXXGAEPRLTATALQTVGTKGWD 217
Query: 239 GVTIC 243
G T+
Sbjct: 218 GFTLA 222
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 113/209 (54%), Gaps = 14/209 (6%)
Query: 28 ALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIG 87
A+ QY+ + + P++ +++E+ ++ A S +G+FL +L+++ A+N +EIG
Sbjct: 9 AVDQYVSDVLI-PKD-STLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIG 66
Query: 88 VYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147
GYS + A L G+++ ++ + ++ ++ I++A + +++ R G AL L
Sbjct: 67 TLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ-Q 125
Query: 148 IQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVV--APPDAPL 205
I++EK + FDFIF+DADK N Y + ++L + G VI DN + G V+ D +
Sbjct: 126 IENEK-YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRV 184
Query: 206 RKYVRYYRDFVLELNKALAADPRIEICML 234
+ R+Y + +AA+PR+ L
Sbjct: 185 QGIRRFY--------ELIAAEPRVSATAL 205
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
Query: 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKI 133
LLK +EIG GYS + A ALP+ I++++ + YE ++ G+ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 134 DFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLW 193
+ G AL + + L + + FD +F+DA K Y + V+ GG+I DN L+
Sbjct: 108 ELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 194 NGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTIC 243
G +VA D +++ + + N+ L P+ + + PVGDG+ I
Sbjct: 164 RG-LVAETDIEHKRH-KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +P+S+ E + M +GQ ++ +++ + +E+G Y GYS + A
Sbjct: 19 PGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMAR 78
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L ++L M+IN + + ++ AG+ K+ G + DL+ Q +K + +
Sbjct: 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS---QDLIPQLKKKYDVDTL 135
Query: 158 DFIFVDADKDNYLNYHKRLIE---LVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRD 214
D +F+D KD YL L+E L++ G V+ DN V+ P YVR
Sbjct: 136 DMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADN------VIVPGTPDFLAYVRGSSS 188
Query: 215 F 215
F
Sbjct: 189 F 189
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +P+S+ E + M +GQ ++ +++ + +E+G Y GYS + A
Sbjct: 21 PGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMAR 80
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L ++L M++N + + ++ AG+ K+ G + DL+ Q +K + +
Sbjct: 81 LLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS---QDLIPQLKKKYDVDTL 137
Query: 158 DFIFVDADKDNYLNYHKRLIE---LVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRD 214
D +F+D KD YL L+E L++ G V+ DN V+ P YVR
Sbjct: 138 DMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADN------VIVPGTPDFLAYVRGSSS 190
Query: 215 F 215
F
Sbjct: 191 F 191
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +P+S+ E + M +GQ ++ +++ + +E+G Y GYS + A
Sbjct: 19 PGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMAR 78
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L ++L M++N + + ++ AG+ K+ G + DL+ Q +K + +
Sbjct: 79 LLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS---QDLIPQLKKKYDVDTL 135
Query: 158 DFIFVDADKDNYLNYHKRLIE---LVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRD 214
D +F+D KD YL L+E L++ G V+ DN V+ P YVR
Sbjct: 136 DMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADN------VIVPGTPDFLAYVRGSSS 188
Query: 215 F 215
F
Sbjct: 189 F 189
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Query: 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV 129
+ L++ N KN +EIG GYS A ++ DD + ++ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 130 AHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189
+++ EG AL + + N +D IF+DA K + + L+K G++ D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 190 NTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTIC 243
N L++G V+ + VR V + N+ L P L + DG+ I
Sbjct: 176 NVLYHG-FVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +S+ E + + M +G+ ++ +++ +E+G Y GYS + A
Sbjct: 18 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 77
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L +++ ++IN + + ++ AGV K+ G + D++ Q +K + +
Sbjct: 78 LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGAS---QDIIPQLKKKYDVDTL 134
Query: 158 DFIFVDADKDNYLNYHKRLIE--LVKVGGVIGYDNTLWNGS 196
D +F+D KD YL L E L++ G V+ DN + G+
Sbjct: 135 DMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA 175
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +S+ E + + M +G+ ++ +++ +E+G Y GYS + A
Sbjct: 21 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 80
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L +++ ++IN + + ++ AGV K+ G + D++ Q +K + +
Sbjct: 81 LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGAS---QDIIPQLKKKYDVDTL 137
Query: 158 DFIFVDADKDNYLNYHKRLIE--LVKVGGVIGYDNTLWNGS 196
D +F+D KD YL L E L++ G V+ DN + G+
Sbjct: 138 DMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA 178
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 40 PREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99
P +S+ E + + M +G+ ++ +++ +E+G Y GYS + A
Sbjct: 18 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 77
Query: 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH--GSF 157
L +++ ++IN + + ++ AG+ K+ G + D++ Q +K + +
Sbjct: 78 LLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGAS---QDIIPQLKKKYDVDTL 134
Query: 158 DFIFVDADKDNYLNYHKRLIE--LVKVGGVIGYDNTLWNGS 196
D +F+D KD YL L E L++ G V+ DN + G+
Sbjct: 135 DMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA 175
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 67 EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK 126
+ F+ M+L + ++ GV +G A A+ GK+ A + E +L + K
Sbjct: 100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
Query: 127 AGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGG 184
G+ ++ + V D I + + D +F+D + NY + E +K GG
Sbjct: 160 WGLIERV------TIKVRD--ISEGFDEKDVDALFLDV--PDPWNYIDKCWEALKGGG 207
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 6 EDQQNQQGRHQEVGHKS-----LLQSDALYQYILE----TSVYPRE--PESMKELRE 51
ED NQ GRH V H++ +L+ ++ Y E +S + R+ PESM LRE
Sbjct: 92 EDISNQGGRHFLVSHRNDQVLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLRE 148
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137
+ A ++IG +G L+ ALA D I A+D ++ E+ L I A + +I +
Sbjct: 42 ITAGTCIDIG--SGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQ 99
Query: 138 GPA--LPVLD 145
G +P+ D
Sbjct: 100 GDVHNIPIED 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,634,496
Number of Sequences: 62578
Number of extensions: 326469
Number of successful extensions: 900
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 21
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)