Query 025824
Match_columns 247
No_of_seqs 253 out of 2984
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02589 caffeoyl-CoA O-methyl 100.0 1.8E-47 4E-52 317.7 27.5 246 1-246 1-246 (247)
2 PF01596 Methyltransf_3: O-met 100.0 4.6E-45 1E-49 296.0 22.1 199 41-246 6-205 (205)
3 PLN02476 O-methyltransferase 100.0 3.4E-43 7.3E-48 295.4 26.1 212 25-246 67-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 6.1E-42 1.3E-46 284.6 27.0 222 24-247 11-234 (234)
5 COG4122 Predicted O-methyltran 100.0 3.4E-42 7.3E-47 279.1 24.1 212 24-247 7-219 (219)
6 KOG1663 O-methyltransferase [S 100.0 3.2E-42 7E-47 275.8 22.2 219 22-246 14-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 7.7E-18 1.7E-22 124.0 10.3 104 79-190 1-111 (112)
8 COG2242 CobL Precorrin-6B meth 99.7 3.1E-16 6.7E-21 123.4 14.7 118 65-192 20-137 (187)
9 PRK13942 protein-L-isoaspartat 99.7 4.2E-16 9.2E-21 127.9 14.0 116 63-189 60-175 (212)
10 PLN03075 nicotianamine synthas 99.7 2.1E-16 4.5E-21 134.1 12.2 120 63-190 108-233 (296)
11 PRK04457 spermidine synthase; 99.7 2E-15 4.4E-20 127.6 17.2 111 72-189 59-176 (262)
12 PRK00377 cbiT cobalt-precorrin 99.7 8.6E-16 1.9E-20 124.8 14.3 110 76-191 37-146 (198)
13 TIGR02469 CbiT precorrin-6Y C5 99.7 9.5E-16 2.1E-20 114.5 13.5 106 76-189 16-121 (124)
14 PRK13944 protein-L-isoaspartat 99.7 5.8E-16 1.3E-20 126.4 13.2 112 69-190 62-173 (205)
15 TIGR00138 gidB 16S rRNA methyl 99.7 1.5E-15 3.3E-20 121.5 14.7 102 77-189 40-141 (181)
16 TIGR00080 pimt protein-L-isoas 99.7 1.3E-15 2.7E-20 125.4 14.1 152 23-189 19-176 (215)
17 PRK00121 trmB tRNA (guanine-N( 99.7 3.5E-16 7.6E-21 127.4 10.6 139 41-189 6-155 (202)
18 PRK00107 gidB 16S rRNA methylt 99.7 2E-15 4.3E-20 121.2 13.0 100 79-189 45-144 (187)
19 PRK08287 cobalt-precorrin-6Y C 99.7 3E-15 6.4E-20 120.5 13.7 116 65-191 17-132 (187)
20 COG2519 GCD14 tRNA(1-methylade 99.7 2E-15 4.3E-20 123.8 12.6 117 63-189 78-194 (256)
21 COG2518 Pcm Protein-L-isoaspar 99.6 1.4E-15 3.1E-20 122.1 11.1 114 62-189 55-168 (209)
22 PRK14901 16S rRNA methyltransf 99.6 4.4E-15 9.5E-20 134.2 14.9 161 65-246 238-431 (434)
23 COG2226 UbiE Methylase involve 99.6 2.6E-15 5.6E-20 123.9 12.1 106 79-193 51-159 (238)
24 PRK14903 16S rRNA methyltransf 99.6 1E-14 2.2E-19 131.5 16.6 121 63-190 221-366 (431)
25 PF13847 Methyltransf_31: Meth 99.6 2.8E-15 6E-20 116.7 11.3 108 78-192 2-112 (152)
26 PRK07402 precorrin-6B methylas 99.6 8.5E-15 1.8E-19 118.7 14.4 120 63-191 24-143 (196)
27 PF01209 Ubie_methyltran: ubiE 99.6 2.6E-15 5.6E-20 124.7 10.9 111 74-192 42-155 (233)
28 PF13578 Methyltransf_24: Meth 99.6 3.4E-16 7.4E-21 114.4 4.7 102 84-191 1-106 (106)
29 PF01135 PCMT: Protein-L-isoas 99.6 2.5E-15 5.5E-20 122.5 9.8 115 63-188 56-170 (209)
30 PF05175 MTS: Methyltransferas 99.6 7.4E-15 1.6E-19 116.5 11.9 111 68-188 20-138 (170)
31 PRK14902 16S rRNA methyltransf 99.6 1.6E-14 3.4E-19 131.0 15.6 121 63-190 234-379 (444)
32 TIGR00446 nop2p NOL1/NOP2/sun 99.6 2.8E-14 6.1E-19 120.9 15.7 127 63-202 55-206 (264)
33 TIGR03533 L3_gln_methyl protei 99.6 6.4E-14 1.4E-18 119.8 17.3 118 63-189 101-250 (284)
34 PRK14904 16S rRNA methyltransf 99.6 2.8E-14 6E-19 129.4 15.8 117 65-190 236-377 (445)
35 PF08704 GCD14: tRNA methyltra 99.6 1.9E-14 4E-19 119.8 12.4 118 63-188 24-144 (247)
36 PRK00312 pcm protein-L-isoaspa 99.6 5.5E-14 1.2E-18 115.3 15.0 114 62-189 61-174 (212)
37 TIGR00563 rsmB ribosomal RNA s 99.6 4.4E-14 9.5E-19 127.5 15.7 121 65-191 224-369 (426)
38 PRK11036 putative S-adenosyl-L 99.6 2.3E-14 5E-19 120.8 12.3 102 78-188 43-147 (255)
39 TIGR02752 MenG_heptapren 2-hep 99.6 3.1E-14 6.6E-19 118.2 12.5 109 74-190 40-151 (231)
40 PRK10901 16S rRNA methyltransf 99.6 1.1E-13 2.3E-18 125.0 16.4 119 64-190 229-372 (427)
41 PRK11805 N5-glutamine S-adenos 99.6 5.9E-14 1.3E-18 121.2 13.3 117 64-189 114-262 (307)
42 PF13659 Methyltransf_26: Meth 99.6 2.5E-14 5.4E-19 106.0 9.4 101 81-188 2-113 (117)
43 COG4123 Predicted O-methyltran 99.6 3.6E-14 7.7E-19 117.3 11.2 117 66-188 31-168 (248)
44 PLN02233 ubiquinone biosynthes 99.5 8E-14 1.7E-18 117.9 12.9 111 75-192 69-184 (261)
45 PRK00811 spermidine synthase; 99.5 2.6E-13 5.7E-18 116.0 16.2 106 77-189 74-190 (283)
46 PF02353 CMAS: Mycolic acid cy 99.5 4.2E-14 9.2E-19 120.0 10.3 109 74-194 57-170 (273)
47 PRK01581 speE spermidine synth 99.5 2.9E-13 6.3E-18 117.6 15.4 108 75-189 146-267 (374)
48 COG2230 Cfa Cyclopropane fatty 99.5 1.1E-13 2.4E-18 116.4 12.3 120 62-193 52-179 (283)
49 PLN02366 spermidine synthase 99.5 3.5E-13 7.7E-18 116.0 15.6 107 77-189 89-205 (308)
50 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.3E-13 2.7E-18 111.7 11.8 105 78-188 15-130 (194)
51 PLN02244 tocopherol O-methyltr 99.5 1.4E-13 3E-18 120.8 12.9 106 78-192 117-225 (340)
52 PF07279 DUF1442: Protein of u 99.5 3.1E-13 6.6E-18 108.4 13.5 155 64-244 26-185 (218)
53 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.9E-13 8.4E-18 112.9 14.7 106 78-192 55-166 (247)
54 PRK15128 23S rRNA m(5)C1962 me 99.5 1.5E-13 3.2E-18 122.3 12.5 109 76-189 217-338 (396)
55 TIGR00536 hemK_fam HemK family 99.5 2.8E-13 6.1E-18 116.0 13.7 116 65-189 96-243 (284)
56 TIGR00740 methyltransferase, p 99.5 5E-13 1.1E-17 111.6 14.7 106 79-193 53-164 (239)
57 PRK11873 arsM arsenite S-adeno 99.5 2E-13 4.4E-18 116.1 12.1 112 76-195 74-188 (272)
58 PLN02396 hexaprenyldihydroxybe 99.5 4.3E-13 9.4E-18 116.2 13.8 103 79-191 131-236 (322)
59 smart00828 PKS_MT Methyltransf 99.5 1.5E-13 3.3E-18 113.5 10.6 103 81-192 1-106 (224)
60 PRK11207 tellurite resistance 99.5 2.3E-13 5.1E-18 110.4 11.4 100 77-188 28-132 (197)
61 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.2E-12 2.5E-17 106.1 14.3 113 68-189 42-158 (199)
62 TIGR00477 tehB tellurite resis 99.5 5E-13 1.1E-17 108.3 12.3 103 74-189 25-132 (195)
63 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.4E-13 7.4E-18 109.9 11.0 119 62-192 39-163 (243)
64 PRK13943 protein-L-isoaspartat 99.5 5.9E-13 1.3E-17 115.3 12.9 104 75-189 76-179 (322)
65 PRK15001 SAM-dependent 23S rib 99.5 4.6E-13 9.9E-18 118.1 12.4 112 69-189 218-339 (378)
66 TIGR00417 speE spermidine synt 99.5 2.7E-12 5.8E-17 109.1 16.0 106 77-189 70-185 (270)
67 PRK01683 trans-aconitate 2-met 99.5 5.3E-13 1.2E-17 112.6 11.4 99 76-189 28-129 (258)
68 PF13649 Methyltransf_25: Meth 99.5 2.8E-13 6E-18 98.1 8.3 93 83-184 1-101 (101)
69 TIGR00537 hemK_rel_arch HemK-r 99.5 1E-12 2.3E-17 104.9 12.4 108 68-189 8-139 (179)
70 PF08241 Methyltransf_11: Meth 99.5 1.5E-13 3.2E-18 97.4 6.4 92 84-188 1-95 (95)
71 PRK14103 trans-aconitate 2-met 99.5 4.7E-13 1E-17 112.9 10.3 96 77-189 27-125 (255)
72 TIGR00406 prmA ribosomal prote 99.4 1.9E-12 4.2E-17 111.0 13.9 104 78-192 158-261 (288)
73 TIGR03534 RF_mod_PrmC protein- 99.4 2.1E-12 4.6E-17 108.3 13.9 115 65-189 71-216 (251)
74 PRK01544 bifunctional N5-gluta 99.4 1.3E-12 2.8E-17 120.0 13.6 101 80-189 139-268 (506)
75 PRK04266 fibrillarin; Provisio 99.4 1.3E-12 2.9E-17 107.9 12.1 114 66-189 57-175 (226)
76 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.3E-12 2.7E-17 124.5 13.5 110 74-191 533-657 (702)
77 TIGR02716 C20_methyl_CrtF C-20 99.4 1.9E-12 4.1E-17 112.0 13.1 109 75-194 145-258 (306)
78 PRK08317 hypothetical protein; 99.4 2.8E-12 6.1E-17 106.3 13.6 121 71-200 11-134 (241)
79 PLN02823 spermine synthase 99.4 5E-12 1.1E-16 110.0 15.6 106 77-189 101-219 (336)
80 COG1092 Predicted SAM-dependen 99.4 2.3E-12 5E-17 113.6 12.7 113 74-192 212-338 (393)
81 PRK14968 putative methyltransf 99.4 4.5E-12 9.7E-17 101.6 13.4 109 69-188 13-146 (188)
82 COG4106 Tam Trans-aconitate me 99.4 6E-13 1.3E-17 106.3 8.0 102 73-189 24-128 (257)
83 PRK00517 prmA ribosomal protei 99.4 2.3E-11 4.9E-16 102.3 17.5 110 66-192 105-215 (250)
84 PRK14121 tRNA (guanine-N(7)-)- 99.4 3.8E-12 8.2E-17 112.0 13.2 104 78-188 121-233 (390)
85 PTZ00098 phosphoethanolamine N 99.4 2.4E-12 5.2E-17 109.0 11.5 106 76-193 49-159 (263)
86 TIGR03704 PrmC_rel_meth putati 99.4 5E-12 1.1E-16 106.3 13.4 115 65-189 68-215 (251)
87 TIGR00095 RNA methyltransferas 99.4 1.1E-11 2.4E-16 99.8 14.7 116 70-190 40-159 (189)
88 PRK12335 tellurite resistance 99.4 3.1E-12 6.6E-17 109.8 12.2 99 77-188 118-221 (287)
89 PRK11933 yebU rRNA (cytosine-C 99.4 7.5E-12 1.6E-16 113.4 15.2 130 62-203 94-250 (470)
90 PRK15068 tRNA mo(5)U34 methylt 99.4 4.1E-12 9E-17 110.5 12.7 108 78-195 121-231 (322)
91 COG2890 HemK Methylase of poly 99.4 4.5E-12 9.8E-17 108.0 12.6 116 63-189 92-237 (280)
92 PRK09328 N5-glutamine S-adenos 99.4 6E-12 1.3E-16 107.1 13.0 115 65-189 91-237 (275)
93 COG2264 PrmA Ribosomal protein 99.4 3.4E-12 7.4E-17 108.3 11.1 105 78-192 161-265 (300)
94 PRK00216 ubiE ubiquinone/menaq 99.4 6.9E-12 1.5E-16 104.1 12.6 107 78-191 50-159 (239)
95 PRK14966 unknown domain/N5-glu 99.4 6E-12 1.3E-16 111.5 12.8 116 64-188 235-379 (423)
96 PRK14967 putative methyltransf 99.4 1E-11 2.2E-16 102.7 13.4 99 78-188 35-157 (223)
97 PLN02336 phosphoethanolamine N 99.4 1.4E-11 2.9E-16 112.9 15.5 114 68-193 256-372 (475)
98 PRK06922 hypothetical protein; 99.4 7.4E-12 1.6E-16 115.8 13.4 113 72-192 411-539 (677)
99 PF03602 Cons_hypoth95: Conser 99.4 7.5E-12 1.6E-16 100.2 11.4 124 62-190 24-153 (183)
100 PF03848 TehB: Tellurite resis 99.4 8.5E-12 1.8E-16 100.0 11.6 113 65-191 17-134 (192)
101 PF08242 Methyltransf_12: Meth 99.4 3.1E-13 6.6E-18 97.3 2.8 96 84-186 1-99 (99)
102 PRK09489 rsmC 16S ribosomal RN 99.4 1E-11 2.2E-16 108.7 12.5 99 78-188 195-301 (342)
103 TIGR01177 conserved hypothetic 99.3 1.2E-11 2.5E-16 108.2 12.5 114 64-188 167-292 (329)
104 PRK05134 bifunctional 3-demeth 99.3 3.4E-11 7.4E-16 100.1 14.2 115 65-190 34-151 (233)
105 TIGR03587 Pse_Me-ase pseudamin 99.3 1.7E-11 3.7E-16 100.0 11.9 104 74-194 38-146 (204)
106 PRK10258 biotin biosynthesis p 99.3 8.3E-12 1.8E-16 105.0 10.3 108 67-190 30-140 (251)
107 PRK03522 rumB 23S rRNA methylu 99.3 2.3E-11 5.1E-16 105.6 13.2 101 78-188 172-272 (315)
108 TIGR00452 methyltransferase, p 99.3 1.7E-11 3.6E-16 105.9 12.2 108 78-195 120-230 (314)
109 PF05401 NodS: Nodulation prot 99.3 4.9E-12 1.1E-16 100.6 8.1 124 53-190 14-146 (201)
110 TIGR02072 BioC biotin biosynth 99.3 1.9E-11 4.1E-16 101.4 11.8 101 78-191 33-136 (240)
111 PF10672 Methyltrans_SAM: S-ad 99.3 2E-11 4.4E-16 103.7 11.9 109 74-188 118-236 (286)
112 smart00138 MeTrc Methyltransfe 99.3 2E-11 4.3E-16 103.4 11.9 169 8-189 25-241 (264)
113 PF06325 PrmA: Ribosomal prote 99.3 1.3E-11 2.8E-16 105.5 10.4 115 65-192 146-261 (295)
114 PRK11088 rrmA 23S rRNA methylt 99.3 4E-11 8.7E-16 102.1 13.3 94 79-189 85-180 (272)
115 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 3E-11 6.6E-16 99.2 12.2 105 77-191 37-144 (223)
116 COG2813 RsmC 16S RNA G1207 met 99.3 2.6E-11 5.5E-16 102.5 11.7 107 70-188 150-264 (300)
117 PRK03612 spermidine synthase; 99.3 1.1E-11 2.5E-16 114.3 10.2 106 77-189 295-414 (521)
118 PF04989 CmcI: Cephalosporin h 99.3 3.9E-11 8.4E-16 96.6 11.6 169 57-232 11-186 (206)
119 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.5E-11 7.5E-16 98.7 11.3 100 79-190 34-152 (213)
120 TIGR03438 probable methyltrans 99.3 8.5E-11 1.8E-15 101.5 14.1 109 79-189 63-176 (301)
121 KOG2904 Predicted methyltransf 99.3 5.4E-11 1.2E-15 98.3 11.9 121 63-190 126-285 (328)
122 PRK13255 thiopurine S-methyltr 99.3 6.1E-11 1.3E-15 97.6 12.1 119 57-188 16-153 (218)
123 PRK11705 cyclopropane fatty ac 99.3 4.8E-11 1E-15 106.1 12.1 100 77-192 165-269 (383)
124 COG0421 SpeE Spermidine syntha 99.3 1.5E-10 3.4E-15 98.2 14.5 106 77-189 74-189 (282)
125 COG0220 Predicted S-adenosylme 99.3 1.1E-10 2.4E-15 96.1 12.9 129 54-188 22-162 (227)
126 PLN02490 MPBQ/MSBQ methyltrans 99.3 4.4E-11 9.6E-16 104.2 11.1 99 79-189 113-214 (340)
127 COG0144 Sun tRNA and rRNA cyto 99.3 2.1E-10 4.6E-15 101.0 15.4 133 61-203 138-296 (355)
128 TIGR02085 meth_trns_rumB 23S r 99.3 1.5E-10 3.3E-15 102.7 14.4 119 60-189 210-333 (374)
129 PRK07580 Mg-protoporphyrin IX 99.3 1.2E-10 2.6E-15 96.4 12.8 98 78-188 62-164 (230)
130 PTZ00146 fibrillarin; Provisio 99.2 7.6E-11 1.6E-15 100.0 11.6 105 78-189 131-236 (293)
131 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.4E-10 3.1E-15 105.2 14.3 121 61-189 275-399 (443)
132 KOG4300 Predicted methyltransf 99.2 4.1E-11 8.9E-16 95.3 9.2 100 80-188 77-180 (252)
133 PRK11188 rrmJ 23S rRNA methylt 99.2 1.1E-10 2.3E-15 95.6 12.0 99 78-189 50-164 (209)
134 COG0742 N6-adenine-specific me 99.2 2.3E-10 5E-15 90.7 13.3 124 61-190 24-154 (187)
135 PF13489 Methyltransf_23: Meth 99.2 1.1E-10 2.5E-15 90.8 11.5 106 66-192 8-117 (161)
136 TIGR02021 BchM-ChlM magnesium 99.2 1.5E-10 3.3E-15 95.3 12.8 100 77-189 53-157 (219)
137 KOG1270 Methyltransferases [Co 99.2 1.4E-11 3.1E-16 101.3 6.2 99 81-192 91-197 (282)
138 TIGR00479 rumA 23S rRNA (uraci 99.2 1.9E-10 4.2E-15 104.1 14.1 103 78-188 291-394 (431)
139 PF02390 Methyltransf_4: Putat 99.2 1.6E-10 3.5E-15 93.5 11.6 102 81-188 19-131 (195)
140 PLN02336 phosphoethanolamine N 99.2 1.7E-10 3.8E-15 105.6 13.1 107 77-194 35-146 (475)
141 TIGR01983 UbiG ubiquinone bios 99.2 2.3E-10 5.1E-15 94.3 12.7 114 67-190 29-149 (224)
142 KOG1540 Ubiquinone biosynthesi 99.2 1.6E-10 3.5E-15 94.7 10.9 103 79-188 100-212 (296)
143 PF01564 Spermine_synth: Sperm 99.2 1E-10 2.2E-15 98.0 9.3 107 77-190 74-191 (246)
144 TIGR00438 rrmJ cell division p 99.2 4.3E-10 9.3E-15 90.5 12.3 107 70-189 23-145 (188)
145 smart00650 rADc Ribosomal RNA 99.2 3.3E-10 7.1E-15 89.7 11.3 103 78-193 12-116 (169)
146 cd02440 AdoMet_MTases S-adenos 99.2 4.1E-10 8.8E-15 79.9 10.8 99 82-189 1-103 (107)
147 PLN02672 methionine S-methyltr 99.1 6.2E-10 1.4E-14 108.9 14.0 96 63-165 98-212 (1082)
148 COG2521 Predicted archaeal met 99.1 2E-10 4.4E-15 93.0 8.3 102 78-187 133-242 (287)
149 PRK04338 N(2),N(2)-dimethylgua 99.1 1E-09 2.2E-14 97.5 13.5 100 80-189 58-157 (382)
150 KOG1271 Methyltransferases [Ge 99.1 2.9E-10 6.4E-15 88.7 8.7 106 80-193 68-184 (227)
151 PF02475 Met_10: Met-10+ like- 99.1 4E-10 8.8E-15 91.1 9.8 101 77-187 99-199 (200)
152 PRK05031 tRNA (uracil-5-)-meth 99.1 1.4E-09 3E-14 96.2 13.6 122 60-188 184-318 (362)
153 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 2.3E-09 5E-14 91.7 14.0 147 63-232 69-244 (283)
154 PF08003 Methyltransf_9: Prote 99.1 9.4E-10 2E-14 93.1 11.4 116 70-195 106-224 (315)
155 PF09445 Methyltransf_15: RNA 99.1 2.3E-10 4.9E-15 89.3 7.1 78 81-165 1-78 (163)
156 PRK06202 hypothetical protein; 99.1 6E-10 1.3E-14 92.6 10.1 111 69-192 50-168 (232)
157 PRK05785 hypothetical protein; 99.1 1.3E-09 2.8E-14 90.3 11.0 97 70-184 41-141 (226)
158 KOG2915 tRNA(1-methyladenosine 99.1 1.8E-09 4E-14 89.3 11.0 115 65-187 92-207 (314)
159 PHA03411 putative methyltransf 99.1 3.1E-09 6.7E-14 89.4 12.5 97 78-189 63-182 (279)
160 TIGR00308 TRM1 tRNA(guanine-26 99.1 2.9E-09 6.2E-14 94.2 12.8 102 81-190 46-147 (374)
161 TIGR02143 trmA_only tRNA (urac 99.1 4.5E-09 9.8E-14 92.6 14.1 122 61-189 176-310 (353)
162 KOG2899 Predicted methyltransf 99.0 1.1E-09 2.3E-14 89.3 8.9 107 77-190 56-209 (288)
163 KOG1661 Protein-L-isoaspartate 99.0 1.6E-09 3.4E-14 86.5 9.7 113 66-188 68-191 (237)
164 PF10294 Methyltransf_16: Puta 99.0 4.8E-09 1E-13 83.3 11.5 107 77-189 43-155 (173)
165 PHA03412 putative methyltransf 99.0 5.1E-09 1.1E-13 86.2 11.6 100 78-191 48-164 (241)
166 COG2263 Predicted RNA methylas 99.0 1.2E-08 2.5E-13 80.6 12.8 87 78-178 44-135 (198)
167 PF05891 Methyltransf_PK: AdoM 99.0 1.3E-09 2.9E-14 88.1 7.2 115 79-203 55-176 (218)
168 KOG2730 Methylase [General fun 99.0 1.3E-09 2.7E-14 87.6 6.9 105 55-165 70-174 (263)
169 PF05724 TPMT: Thiopurine S-me 99.0 4.2E-09 9E-14 86.6 10.1 123 56-188 15-153 (218)
170 PRK00536 speE spermidine synth 99.0 1.1E-08 2.3E-13 86.1 12.7 99 75-188 68-169 (262)
171 PF02527 GidB: rRNA small subu 99.0 4.4E-09 9.5E-14 84.1 9.5 96 82-188 51-146 (184)
172 PLN02585 magnesium protoporphy 99.0 1.6E-08 3.6E-13 87.5 13.4 96 79-188 144-248 (315)
173 PRK13256 thiopurine S-methyltr 98.9 1.3E-08 2.8E-13 83.9 11.0 132 56-195 21-168 (226)
174 PF01170 UPF0020: Putative RNA 98.9 1.7E-08 3.6E-13 80.7 11.4 121 62-189 11-150 (179)
175 PRK11727 23S rRNA mA1618 methy 98.9 1.3E-08 2.9E-13 88.0 11.5 82 80-165 115-198 (321)
176 COG2520 Predicted methyltransf 98.9 1.2E-08 2.6E-13 88.5 10.9 118 65-192 174-291 (341)
177 PTZ00338 dimethyladenosine tra 98.9 1.5E-08 3.3E-13 87.0 11.2 98 56-166 14-111 (294)
178 KOG3191 Predicted N6-DNA-methy 98.9 2.1E-08 4.6E-13 78.4 10.7 101 79-189 43-167 (209)
179 PF00891 Methyltransf_2: O-met 98.9 8.2E-09 1.8E-13 86.3 8.7 101 75-194 96-203 (241)
180 COG0357 GidB Predicted S-adeno 98.9 3.4E-08 7.3E-13 80.5 11.7 98 80-188 68-166 (215)
181 COG3963 Phospholipid N-methylt 98.9 2.2E-08 4.7E-13 77.3 9.9 120 61-188 30-154 (194)
182 PF06080 DUF938: Protein of un 98.9 2.8E-08 6.2E-13 80.0 11.0 132 67-199 11-150 (204)
183 COG4976 Predicted methyltransf 98.9 3.3E-09 7.1E-14 85.8 5.5 144 80-246 126-286 (287)
184 COG2265 TrmA SAM-dependent met 98.9 4.3E-08 9.2E-13 88.2 13.3 122 59-188 269-394 (432)
185 PRK14896 ksgA 16S ribosomal RN 98.8 5.3E-08 1.1E-12 82.3 12.3 95 56-166 7-101 (258)
186 PRK01544 bifunctional N5-gluta 98.8 4.2E-08 9.1E-13 90.4 12.0 103 79-188 347-460 (506)
187 PF07021 MetW: Methionine bios 98.8 2.8E-08 6.1E-13 79.0 8.7 132 79-226 13-158 (193)
188 TIGR02081 metW methionine bios 98.8 2.4E-08 5.1E-13 80.8 8.5 89 79-182 13-104 (194)
189 COG1041 Predicted DNA modifica 98.8 4.7E-08 1E-12 84.4 10.6 117 61-188 179-308 (347)
190 PF05711 TylF: Macrocin-O-meth 98.8 1.7E-08 3.7E-13 84.1 7.0 127 63-194 54-216 (248)
191 KOG2361 Predicted methyltransf 98.8 9.1E-09 2E-13 83.9 4.6 107 80-191 72-184 (264)
192 PF05185 PRMT5: PRMT5 arginine 98.7 7.8E-08 1.7E-12 87.1 10.7 100 80-187 187-294 (448)
193 PRK00050 16S rRNA m(4)C1402 me 98.7 5.7E-08 1.2E-12 83.1 9.3 90 69-165 10-99 (296)
194 KOG1499 Protein arginine N-met 98.7 5.6E-08 1.2E-12 83.5 8.8 105 77-191 58-168 (346)
195 PF03059 NAS: Nicotianamine sy 98.7 8.5E-08 1.8E-12 81.0 9.4 103 80-189 121-229 (276)
196 PRK00274 ksgA 16S ribosomal RN 98.7 1.5E-07 3.2E-12 80.2 10.7 100 64-177 27-126 (272)
197 PF12147 Methyltransf_20: Puta 98.7 3.9E-07 8.5E-12 76.7 12.8 116 77-196 133-255 (311)
198 TIGR00755 ksgA dimethyladenosi 98.7 2.5E-07 5.4E-12 78.0 11.9 98 65-177 15-115 (253)
199 KOG3010 Methyltransferase [Gen 98.7 2.8E-08 6.1E-13 81.1 5.4 111 68-188 21-135 (261)
200 PF05958 tRNA_U5-meth_tr: tRNA 98.6 3E-07 6.6E-12 81.1 10.5 114 59-176 173-299 (352)
201 KOG1541 Predicted protein carb 98.6 2E-07 4.4E-12 75.1 7.8 94 80-188 51-158 (270)
202 KOG3420 Predicted RNA methylas 98.6 3.3E-07 7.1E-12 69.2 8.0 77 78-165 47-123 (185)
203 PRK04148 hypothetical protein; 98.6 1.3E-06 2.7E-11 66.0 11.1 99 67-182 4-103 (134)
204 PRK10611 chemotaxis methyltran 98.6 2.5E-07 5.4E-12 79.0 8.1 169 9-189 49-261 (287)
205 KOG1122 tRNA and rRNA cytosine 98.5 8E-07 1.7E-11 78.0 10.4 115 78-203 240-379 (460)
206 COG1352 CheR Methylase of chem 98.5 1.2E-06 2.5E-11 74.1 9.7 165 10-189 27-240 (268)
207 PRK10742 putative methyltransf 98.5 1.1E-06 2.3E-11 72.9 9.0 88 69-165 76-173 (250)
208 PF03291 Pox_MCEL: mRNA cappin 98.5 8.9E-07 1.9E-11 77.2 9.0 106 79-188 62-184 (331)
209 COG4262 Predicted spermidine s 98.4 2.7E-06 5.9E-11 73.5 11.3 106 77-189 287-406 (508)
210 PF04816 DUF633: Family of unk 98.4 1.4E-06 3E-11 71.0 9.1 97 83-187 1-98 (205)
211 KOG0820 Ribosomal RNA adenine 98.4 1.9E-06 4.2E-11 71.7 9.9 89 65-165 44-132 (315)
212 PLN02232 ubiquinone biosynthes 98.4 8E-07 1.7E-11 69.7 7.1 78 108-192 1-83 (160)
213 COG0030 KsgA Dimethyladenosine 98.4 4.3E-06 9.2E-11 70.0 11.5 90 74-176 25-115 (259)
214 KOG1500 Protein arginine N-met 98.4 1.9E-06 4.1E-11 73.7 8.8 99 78-187 176-279 (517)
215 KOG2187 tRNA uracil-5-methyltr 98.4 2.1E-06 4.6E-11 77.2 9.6 122 60-187 360-487 (534)
216 KOG1562 Spermidine synthase [A 98.4 4E-06 8.7E-11 70.5 10.4 152 74-245 116-282 (337)
217 TIGR00478 tly hemolysin TlyA f 98.3 1.1E-06 2.5E-11 72.6 6.4 94 79-188 75-169 (228)
218 COG4076 Predicted RNA methylas 98.3 1.6E-06 3.5E-11 68.3 6.4 99 80-191 33-136 (252)
219 KOG1709 Guanidinoacetate methy 98.3 1.1E-05 2.4E-10 65.0 11.0 104 78-192 100-208 (271)
220 PF02384 N6_Mtase: N-6 DNA Met 98.3 7.2E-06 1.6E-10 71.1 10.8 124 59-187 26-180 (311)
221 PF01728 FtsJ: FtsJ-like methy 98.3 2.7E-06 5.9E-11 67.8 7.2 97 79-189 23-138 (181)
222 PF01739 CheR: CheR methyltran 98.3 3.7E-06 7.9E-11 68.0 7.8 104 79-189 31-174 (196)
223 PF08123 DOT1: Histone methyla 98.3 6.3E-06 1.4E-10 67.1 9.1 111 75-192 38-160 (205)
224 KOG1975 mRNA cap methyltransfe 98.2 8.6E-06 1.9E-10 69.4 9.3 107 78-188 116-235 (389)
225 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.1E-05 2.5E-10 77.3 11.3 96 65-165 175-312 (702)
226 PF02005 TRM: N2,N2-dimethylgu 98.2 4.8E-06 1E-10 73.9 7.9 106 80-192 50-156 (377)
227 PF13679 Methyltransf_32: Meth 98.2 1.2E-05 2.6E-10 61.7 9.1 75 68-142 10-93 (141)
228 TIGR01444 fkbM_fam methyltrans 98.2 5.9E-06 1.3E-10 63.1 7.2 58 82-141 1-58 (143)
229 COG0293 FtsJ 23S rRNA methylas 98.2 2.3E-05 5E-10 63.3 10.6 100 78-190 44-159 (205)
230 PF05219 DREV: DREV methyltran 98.2 8.3E-05 1.8E-09 62.0 14.1 132 79-232 94-236 (265)
231 COG3510 CmcI Cephalosporin hyd 98.1 7.8E-05 1.7E-09 59.1 12.5 144 65-221 55-208 (237)
232 TIGR00006 S-adenosyl-methyltra 98.1 3.2E-05 6.9E-10 66.5 10.7 83 78-165 19-101 (305)
233 TIGR02987 met_A_Alw26 type II 98.1 2.2E-05 4.7E-10 73.0 10.2 84 79-165 31-121 (524)
234 PF01269 Fibrillarin: Fibrilla 98.0 6.2E-05 1.3E-09 61.4 10.1 104 78-188 72-176 (229)
235 PF05971 Methyltransf_10: Prot 98.0 2.6E-05 5.7E-10 66.7 8.1 81 81-165 104-186 (299)
236 PF05148 Methyltransf_8: Hypot 98.0 3.4E-05 7.3E-10 62.3 7.9 107 55-192 52-160 (219)
237 COG0116 Predicted N6-adenine-s 98.0 7.2E-05 1.6E-09 65.8 10.3 114 68-188 180-342 (381)
238 PF06962 rRNA_methylase: Putat 98.0 2.5E-05 5.4E-10 59.3 6.4 83 106-195 1-95 (140)
239 TIGR03439 methyl_EasF probable 97.9 0.0002 4.3E-09 62.2 12.2 107 80-188 77-195 (319)
240 COG2384 Predicted SAM-dependen 97.9 0.00018 3.8E-09 58.5 10.8 94 80-181 17-111 (226)
241 KOG3178 Hydroxyindole-O-methyl 97.9 4E-05 8.7E-10 66.3 7.5 95 80-192 178-277 (342)
242 COG1867 TRM1 N2,N2-dimethylgua 97.9 0.00012 2.7E-09 63.7 10.3 104 80-192 53-156 (380)
243 PF00398 RrnaAD: Ribosomal RNA 97.9 9.2E-05 2E-09 62.7 9.3 112 56-178 8-119 (262)
244 PF07942 N2227: N2227-like pro 97.8 0.00019 4.1E-09 60.7 9.9 103 80-190 57-202 (270)
245 KOG3115 Methyltransferase-like 97.8 0.00013 2.7E-09 58.5 7.9 104 80-188 61-181 (249)
246 PF09243 Rsm22: Mitochondrial 97.8 0.00012 2.6E-09 62.4 8.2 97 78-182 32-133 (274)
247 PF07091 FmrO: Ribosomal RNA m 97.8 0.00026 5.6E-09 58.8 9.6 88 65-163 90-178 (251)
248 PF01861 DUF43: Protein of unk 97.7 0.0038 8.2E-08 51.7 15.7 97 79-184 44-142 (243)
249 PF01795 Methyltransf_5: MraW 97.7 0.00016 3.5E-09 62.2 7.6 94 69-167 11-104 (310)
250 COG0275 Predicted S-adenosylme 97.7 0.00042 9E-09 58.9 9.7 85 78-166 22-106 (314)
251 COG0500 SmtA SAM-dependent met 97.6 0.00081 1.8E-08 50.3 10.4 104 83-194 52-159 (257)
252 PHA01634 hypothetical protein 97.6 0.00026 5.7E-09 52.5 7.0 75 78-165 27-101 (156)
253 PRK01747 mnmC bifunctional tRN 97.6 0.00041 9E-09 66.4 10.1 104 79-188 57-204 (662)
254 KOG1269 SAM-dependent methyltr 97.6 0.00011 2.4E-09 64.9 5.5 106 78-192 109-217 (364)
255 PRK11760 putative 23S rRNA C24 97.5 0.00084 1.8E-08 58.4 9.9 87 78-183 210-296 (357)
256 PF04672 Methyltransf_19: S-ad 97.5 0.002 4.3E-08 54.3 11.7 167 21-192 9-192 (267)
257 KOG3045 Predicted RNA methylas 97.5 0.00038 8.3E-09 57.8 7.2 104 56-192 161-266 (325)
258 KOG1253 tRNA methyltransferase 97.5 7.7E-05 1.7E-09 67.0 3.3 117 71-191 101-217 (525)
259 COG3897 Predicted methyltransf 97.5 0.00034 7.3E-09 55.8 6.2 72 78-163 78-149 (218)
260 PF04445 SAM_MT: Putative SAM- 97.5 0.00013 2.8E-09 60.3 4.0 86 71-165 65-160 (234)
261 KOG2198 tRNA cytosine-5-methyl 97.5 0.0018 3.9E-08 56.5 11.0 122 75-203 151-304 (375)
262 COG1889 NOP1 Fibrillarin-like 97.4 0.0022 4.8E-08 51.5 10.3 103 78-188 75-178 (231)
263 PF03141 Methyltransf_29: Puta 97.3 0.0002 4.3E-09 64.8 3.9 96 81-189 119-218 (506)
264 KOG2352 Predicted spermine/spe 97.3 0.00039 8.3E-09 62.7 5.6 113 80-194 296-420 (482)
265 KOG4589 Cell division protein 97.3 0.0028 6E-08 50.3 9.3 103 78-195 68-187 (232)
266 KOG2940 Predicted methyltransf 97.2 0.00022 4.7E-09 58.3 2.8 97 80-188 73-172 (325)
267 KOG3201 Uncharacterized conser 97.2 0.0019 4.2E-08 50.0 7.6 104 78-187 28-137 (201)
268 COG1189 Predicted rRNA methyla 97.2 0.0009 2E-08 55.1 5.8 131 78-231 78-219 (245)
269 COG0286 HsdM Type I restrictio 97.0 0.0069 1.5E-07 55.9 10.9 134 61-196 168-335 (489)
270 KOG1501 Arginine N-methyltrans 97.0 0.0016 3.5E-08 57.9 6.1 59 82-142 69-127 (636)
271 COG1064 AdhP Zn-dependent alco 97.0 0.0046 1E-07 54.0 8.9 98 76-192 163-261 (339)
272 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0006 1.3E-08 57.3 3.1 113 79-194 56-203 (256)
273 KOG1596 Fibrillarin and relate 96.8 0.0039 8.4E-08 51.4 6.5 104 78-188 155-259 (317)
274 KOG4058 Uncharacterized conser 96.8 0.0087 1.9E-07 45.7 7.6 122 56-188 49-170 (199)
275 KOG0024 Sorbitol dehydrogenase 96.8 0.013 2.9E-07 50.4 9.5 119 64-190 145-273 (354)
276 COG4798 Predicted methyltransf 96.7 0.0038 8.2E-08 49.9 5.5 109 74-191 43-167 (238)
277 PF12692 Methyltransf_17: S-ad 96.6 0.024 5.1E-07 43.3 8.9 112 70-193 17-137 (160)
278 COG1063 Tdh Threonine dehydrog 96.4 0.015 3.2E-07 51.4 8.1 102 79-192 168-271 (350)
279 KOG1099 SAM-dependent methyltr 96.4 0.02 4.3E-07 47.0 7.9 98 79-189 41-162 (294)
280 COG5459 Predicted rRNA methyla 96.4 0.0037 8.1E-08 54.3 4.0 107 78-189 112-224 (484)
281 KOG1227 Putative methyltransfe 96.4 0.0025 5.4E-08 54.1 2.8 99 80-192 195-299 (351)
282 KOG2671 Putative RNA methylase 96.4 0.013 2.9E-07 50.7 7.1 96 61-165 190-293 (421)
283 PF11599 AviRa: RRNA methyltra 96.1 0.077 1.7E-06 43.2 9.6 107 79-189 51-213 (246)
284 PRK13699 putative methylase; P 96.0 0.0094 2E-07 49.4 4.5 51 133-188 2-70 (227)
285 KOG2793 Putative N2,N2-dimethy 96.0 0.046 1E-06 45.7 8.3 100 79-188 86-197 (248)
286 PF00107 ADH_zinc_N: Zinc-bind 96.0 0.014 3.1E-07 43.3 4.9 91 89-192 1-91 (130)
287 PF02254 TrkA_N: TrkA-N domain 95.9 0.034 7.4E-07 40.5 6.7 88 88-188 4-94 (116)
288 PF03141 Methyltransf_29: Puta 95.9 0.028 6E-07 51.2 7.2 131 78-245 364-506 (506)
289 cd00315 Cyt_C5_DNA_methylase C 95.9 0.048 1E-06 46.5 8.3 95 82-192 2-113 (275)
290 PF05430 Methyltransf_30: S-ad 95.8 0.011 2.4E-07 44.2 3.5 51 132-188 32-88 (124)
291 KOG0822 Protein kinase inhibit 95.7 0.032 6.9E-07 51.1 6.8 99 81-187 369-475 (649)
292 KOG2360 Proliferation-associat 95.7 0.017 3.7E-07 50.8 4.7 90 70-165 204-293 (413)
293 PF04378 RsmJ: Ribosomal RNA s 95.7 0.06 1.3E-06 45.0 7.8 114 65-188 44-162 (245)
294 PRK11524 putative methyltransf 95.6 0.022 4.8E-07 48.8 5.2 53 132-189 8-79 (284)
295 PF11968 DUF3321: Putative met 95.6 0.052 1.1E-06 44.3 6.9 80 81-185 53-139 (219)
296 COG4301 Uncharacterized conser 95.5 0.27 5.7E-06 41.1 10.7 121 64-188 59-191 (321)
297 PRK09424 pntA NAD(P) transhydr 95.5 0.17 3.7E-06 46.9 10.8 109 78-195 163-290 (509)
298 cd08283 FDH_like_1 Glutathione 95.4 0.097 2.1E-06 46.7 8.9 107 75-190 180-306 (386)
299 KOG2798 Putative trehalase [Ca 95.3 0.14 3E-06 44.1 8.8 115 67-190 131-296 (369)
300 PRK09880 L-idonate 5-dehydroge 95.2 0.13 2.9E-06 44.9 8.9 97 79-190 169-266 (343)
301 KOG1098 Putative SAM-dependent 95.1 0.17 3.7E-06 47.3 9.4 99 77-192 42-159 (780)
302 KOG1331 Predicted methyltransf 94.9 0.019 4E-07 48.6 2.5 102 65-188 34-141 (293)
303 PF01053 Cys_Met_Meta_PP: Cys/ 94.9 0.33 7.2E-06 43.5 10.5 124 64-194 54-182 (386)
304 PRK08114 cystathionine beta-ly 94.9 0.41 9E-06 43.0 11.1 127 64-197 61-193 (395)
305 cd08237 ribitol-5-phosphate_DH 94.6 0.3 6.5E-06 42.8 9.5 93 78-190 162-256 (341)
306 cd08254 hydroxyacyl_CoA_DH 6-h 94.5 0.3 6.5E-06 42.1 9.2 99 77-189 163-262 (338)
307 cd08294 leukotriene_B4_DH_like 94.3 0.47 1E-05 40.8 10.0 99 75-188 139-239 (329)
308 KOG3987 Uncharacterized conser 94.1 0.0087 1.9E-07 48.4 -1.2 94 79-192 112-209 (288)
309 COG3129 Predicted SAM-dependen 94.1 0.11 2.4E-06 42.8 5.1 81 81-165 80-162 (292)
310 TIGR03451 mycoS_dep_FDH mycoth 94.0 0.42 9.1E-06 42.0 9.1 102 77-191 174-277 (358)
311 KOG2651 rRNA adenine N-6-methy 93.9 0.2 4.3E-06 44.3 6.7 54 67-122 141-194 (476)
312 PF05050 Methyltransf_21: Meth 93.9 0.16 3.6E-06 39.0 5.8 43 85-127 1-48 (167)
313 cd08281 liver_ADH_like1 Zinc-d 93.7 0.42 9.1E-06 42.3 8.8 99 78-190 190-290 (371)
314 TIGR00027 mthyl_TIGR00027 meth 93.7 1.7 3.6E-05 36.8 11.9 110 79-191 81-198 (260)
315 PF00145 DNA_methylase: C-5 cy 93.7 0.47 1E-05 40.9 8.7 94 82-192 2-112 (335)
316 TIGR03201 dearomat_had 6-hydro 93.5 0.57 1.2E-05 41.0 9.0 105 77-191 164-273 (349)
317 PRK11524 putative methyltransf 93.4 0.28 6.1E-06 42.0 6.8 57 67-126 194-252 (284)
318 PRK10309 galactitol-1-phosphat 93.4 0.67 1.4E-05 40.5 9.3 102 78-191 159-261 (347)
319 TIGR00561 pntA NAD(P) transhyd 93.4 0.3 6.4E-06 45.3 7.2 101 78-187 162-281 (511)
320 cd05188 MDR Medium chain reduc 93.3 0.83 1.8E-05 37.7 9.4 98 78-189 133-231 (271)
321 PF02636 Methyltransf_28: Puta 93.3 0.26 5.6E-06 41.4 6.2 47 80-126 19-72 (252)
322 PF10237 N6-adenineMlase: Prob 93.2 2.3 5E-05 33.3 10.9 108 65-188 9-121 (162)
323 COG2961 ComJ Protein involved 93.2 3 6.5E-05 34.9 11.9 115 64-188 74-193 (279)
324 PF01555 N6_N4_Mtase: DNA meth 93.1 0.31 6.7E-06 39.5 6.4 55 65-122 175-231 (231)
325 COG0604 Qor NADPH:quinone redu 93.1 0.99 2.1E-05 39.5 9.8 103 74-190 137-241 (326)
326 cd08295 double_bond_reductase_ 93.0 1.2 2.6E-05 38.7 10.3 100 75-188 147-249 (338)
327 PLN03154 putative allyl alcoho 93.0 1.2 2.6E-05 39.1 10.4 101 76-190 155-258 (348)
328 COG1568 Predicted methyltransf 93.0 0.38 8.1E-06 40.8 6.6 96 79-183 152-250 (354)
329 COG0686 Ald Alanine dehydrogen 93.0 0.95 2.1E-05 39.2 9.1 102 80-196 168-274 (371)
330 COG0677 WecC UDP-N-acetyl-D-ma 92.9 0.37 8E-06 42.9 6.7 106 81-196 10-134 (436)
331 TIGR02825 B4_12hDH leukotriene 92.8 1.9 4.2E-05 37.1 11.4 100 75-189 134-236 (325)
332 cd08293 PTGR2 Prostaglandin re 92.8 0.97 2.1E-05 39.2 9.5 94 81-188 156-252 (345)
333 TIGR00518 alaDH alanine dehydr 92.6 0.73 1.6E-05 41.1 8.5 96 79-188 166-265 (370)
334 PRK09028 cystathionine beta-ly 92.6 2.6 5.6E-05 37.9 12.0 122 67-195 63-188 (394)
335 KOG0053 Cystathionine beta-lya 92.5 4.8 0.0001 36.2 13.2 124 65-195 77-204 (409)
336 PRK07810 O-succinylhomoserine 92.4 2 4.4E-05 38.7 11.1 124 64-194 69-196 (403)
337 TIGR01324 cysta_beta_ly_B cyst 92.4 3.2 6.9E-05 37.1 12.3 126 65-197 50-179 (377)
338 PLN02740 Alcohol dehydrogenase 92.2 1.5 3.2E-05 39.0 10.0 101 76-190 195-300 (381)
339 PF03686 UPF0146: Uncharacteri 92.1 0.97 2.1E-05 33.7 7.2 91 70-180 4-94 (127)
340 PTZ00357 methyltransferase; Pr 92.1 0.95 2E-05 43.3 8.6 105 82-186 703-831 (1072)
341 PRK05939 hypothetical protein; 92.1 4.5 9.7E-05 36.4 12.9 123 64-194 46-172 (397)
342 PRK13699 putative methylase; P 92.1 0.61 1.3E-05 38.6 6.8 58 67-127 149-208 (227)
343 cd08239 THR_DH_like L-threonin 92.0 1 2.3E-05 39.0 8.6 99 77-189 161-261 (339)
344 PLN02827 Alcohol dehydrogenase 91.9 1.5 3.2E-05 39.0 9.6 101 77-190 191-295 (378)
345 PRK05967 cystathionine beta-ly 91.8 4 8.7E-05 36.8 12.2 122 64-192 63-188 (395)
346 TIGR00675 dcm DNA-methyltransf 91.7 0.84 1.8E-05 39.7 7.6 92 83-192 1-110 (315)
347 KOG2912 Predicted DNA methylas 91.6 0.34 7.4E-06 41.9 4.8 94 68-165 86-187 (419)
348 TIGR03366 HpnZ_proposed putati 91.5 2.7 5.9E-05 35.5 10.5 100 79-192 120-220 (280)
349 COG1062 AdhC Zn-dependent alco 91.4 2 4.4E-05 37.6 9.4 103 76-191 182-286 (366)
350 cd08285 NADP_ADH NADP(H)-depen 91.4 2.1 4.6E-05 37.3 10.0 104 76-191 163-267 (351)
351 cd08230 glucose_DH Glucose deh 91.4 1.4 3.1E-05 38.6 8.9 95 79-191 172-270 (355)
352 cd05278 FDH_like Formaldehyde 91.2 1.6 3.5E-05 37.8 9.0 102 76-189 164-266 (347)
353 PRK07671 cystathionine beta-ly 91.1 3.2 7E-05 37.0 10.9 122 64-193 49-174 (377)
354 COG1565 Uncharacterized conser 91.0 0.81 1.8E-05 40.3 6.7 49 80-128 78-133 (370)
355 PF01210 NAD_Gly3P_dh_N: NAD-d 91.0 0.75 1.6E-05 35.6 6.0 95 82-188 1-101 (157)
356 PRK12475 thiamine/molybdopteri 91.0 3.3 7.1E-05 36.5 10.6 80 79-165 23-125 (338)
357 TIGR02356 adenyl_thiF thiazole 90.8 3.6 7.8E-05 33.3 10.0 81 78-165 19-120 (202)
358 COG0270 Dcm Site-specific DNA 90.8 1.5 3.4E-05 38.3 8.4 98 80-191 3-117 (328)
359 PRK06234 methionine gamma-lyas 90.7 3.5 7.7E-05 37.0 10.9 125 64-195 63-193 (400)
360 PRK08248 O-acetylhomoserine am 90.6 3.5 7.7E-05 37.5 10.8 123 64-193 63-189 (431)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 90.4 2.6 5.5E-05 33.7 8.7 101 82-195 2-125 (185)
362 TIGR01202 bchC 2-desacetyl-2-h 90.4 1.3 2.9E-05 38.1 7.6 87 79-190 144-231 (308)
363 PF06859 Bin3: Bicoid-interact 90.4 0.21 4.5E-06 36.3 2.1 38 156-193 1-47 (110)
364 PRK07502 cyclohexadienyl dehyd 90.4 1.7 3.7E-05 37.5 8.3 88 81-187 7-97 (307)
365 PRK08064 cystathionine beta-ly 90.4 11 0.00025 33.7 13.7 122 64-193 53-178 (390)
366 TIGR02818 adh_III_F_hyde S-(hy 90.3 2.8 6.1E-05 37.0 9.7 101 77-190 183-287 (368)
367 KOG2078 tRNA modification enzy 90.3 0.17 3.7E-06 45.3 1.9 65 78-145 248-313 (495)
368 PRK08045 cystathionine gamma-s 90.1 4.2 9.1E-05 36.4 10.8 125 64-195 51-179 (386)
369 PRK08247 cystathionine gamma-s 90.1 7.8 0.00017 34.3 12.4 120 65-192 52-175 (366)
370 PRK06940 short chain dehydroge 90.0 5.4 0.00012 33.6 10.9 81 81-165 3-85 (275)
371 PF11899 DUF3419: Protein of u 90.0 1.1 2.4E-05 40.1 6.8 75 111-193 256-337 (380)
372 COG3315 O-Methyltransferase in 89.9 4.2 9E-05 35.1 10.1 109 80-191 93-210 (297)
373 cd08300 alcohol_DH_class_III c 89.9 3.7 8.1E-05 36.2 10.2 102 76-190 183-288 (368)
374 cd08238 sorbose_phosphate_red 89.8 1.7 3.7E-05 39.0 8.1 102 78-188 174-286 (410)
375 KOG2352 Predicted spermine/spe 89.7 1.9 4E-05 39.5 8.0 96 82-188 51-159 (482)
376 cd08261 Zn_ADH7 Alcohol dehydr 89.7 3.6 7.7E-05 35.6 9.8 101 75-188 155-256 (337)
377 COG1748 LYS9 Saccharopine dehy 89.5 1.8 4E-05 38.7 7.8 83 81-176 2-88 (389)
378 PRK08574 cystathionine gamma-s 89.4 3.8 8.3E-05 36.6 10.0 121 65-193 53-177 (385)
379 PRK07582 cystathionine gamma-l 89.4 6.6 0.00014 34.8 11.4 117 65-192 51-171 (366)
380 cd00401 AdoHcyase S-adenosyl-L 89.3 3.6 7.9E-05 37.2 9.6 86 79-189 201-288 (413)
381 PRK05708 2-dehydropantoate 2-r 89.2 1.3 2.9E-05 38.2 6.7 96 81-188 3-102 (305)
382 cd08286 FDH_like_ADH2 formalde 89.2 3.7 8E-05 35.6 9.6 99 78-188 165-264 (345)
383 PRK08861 cystathionine gamma-s 89.2 14 0.0003 33.2 13.3 125 64-195 52-180 (388)
384 COG0626 MetC Cystathionine bet 89.1 6.7 0.00015 35.3 11.1 124 64-194 62-190 (396)
385 PRK06176 cystathionine gamma-s 89.0 5 0.00011 35.8 10.4 122 64-193 49-174 (380)
386 PF02153 PDH: Prephenate dehyd 89.0 1.7 3.7E-05 36.6 7.0 74 95-187 3-76 (258)
387 TIGR01425 SRP54_euk signal rec 88.9 7.5 0.00016 35.4 11.3 106 80-191 100-222 (429)
388 cd00757 ThiF_MoeB_HesA_family 88.9 5.5 0.00012 32.8 9.8 80 79-165 20-120 (228)
389 PRK09422 ethanol-active dehydr 88.8 4.5 9.7E-05 34.9 9.8 100 75-188 158-259 (338)
390 PRK07050 cystathionine beta-ly 88.8 12 0.00025 33.6 12.6 125 64-195 64-192 (394)
391 PRK15182 Vi polysaccharide bio 88.7 6 0.00013 36.0 10.8 100 79-195 5-125 (425)
392 PF07015 VirC1: VirC1 protein; 88.6 1.3 2.8E-05 36.7 5.8 76 89-165 12-92 (231)
393 cd01488 Uba3_RUB Ubiquitin act 88.5 5.2 0.00011 34.4 9.6 87 82-175 1-107 (291)
394 PF07757 AdoMet_MTase: Predict 88.4 0.43 9.2E-06 34.6 2.4 34 79-115 58-91 (112)
395 PRK15001 SAM-dependent 23S rib 88.3 3.3 7.1E-05 37.1 8.6 104 69-189 34-141 (378)
396 COG1004 Ugd Predicted UDP-gluc 88.3 7.2 0.00016 35.0 10.5 101 82-195 2-125 (414)
397 cd08233 butanediol_DH_like (2R 88.1 5.9 0.00013 34.5 10.1 101 77-190 170-272 (351)
398 cd00614 CGS_like CGS_like: Cys 88.1 7 0.00015 34.6 10.7 122 64-192 39-164 (369)
399 PRK03562 glutathione-regulated 88.0 2.1 4.5E-05 40.9 7.6 95 81-188 401-496 (621)
400 TIGR02822 adh_fam_2 zinc-bindi 88.0 6.2 0.00013 34.3 10.1 92 77-191 163-255 (329)
401 PRK03659 glutathione-regulated 88.0 2.4 5.1E-05 40.4 7.9 95 81-188 401-496 (601)
402 PRK09496 trkA potassium transp 87.9 5.3 0.00011 36.3 10.0 97 80-187 231-328 (453)
403 PF00072 Response_reg: Respons 87.9 6 0.00013 27.7 8.5 73 107-187 1-75 (112)
404 TIGR02080 O_succ_thio_ly O-suc 87.8 7.5 0.00016 34.7 10.7 124 65-195 51-178 (382)
405 PRK07811 cystathionine gamma-s 87.7 4.9 0.00011 36.0 9.5 120 65-193 61-186 (388)
406 cd08301 alcohol_DH_plants Plan 87.7 5.7 0.00012 35.0 9.9 103 76-191 184-290 (369)
407 TIGR01328 met_gam_lyase methio 87.7 7.3 0.00016 34.9 10.6 124 64-194 58-185 (391)
408 PRK10669 putative cation:proto 87.6 2.5 5.4E-05 39.8 7.8 95 81-188 418-513 (558)
409 cd01484 E1-2_like Ubiquitin ac 87.5 7.4 0.00016 32.4 9.7 88 82-176 1-111 (234)
410 PF00899 ThiF: ThiF family; I 87.5 5.5 0.00012 29.7 8.3 80 80-166 2-102 (135)
411 PF01262 AlaDh_PNT_C: Alanine 87.5 0.63 1.4E-05 36.5 3.2 42 77-120 17-59 (168)
412 PLN02662 cinnamyl-alcohol dehy 87.4 4 8.6E-05 35.0 8.5 79 80-165 4-85 (322)
413 KOG0023 Alcohol dehydrogenase, 87.4 1.5 3.2E-05 38.1 5.5 98 79-190 181-279 (360)
414 COG1255 Uncharacterized protei 87.3 9.7 0.00021 28.0 9.8 94 72-186 6-100 (129)
415 PRK11064 wecC UDP-N-acetyl-D-m 87.3 4.2 9E-05 36.9 8.8 105 81-195 4-124 (415)
416 PRK05968 hypothetical protein; 87.2 16 0.00035 32.7 12.5 123 64-194 62-188 (389)
417 PRK15057 UDP-glucose 6-dehydro 87.2 2.8 6.1E-05 37.6 7.6 38 83-122 3-40 (388)
418 TIGR00853 pts-lac PTS system, 87.2 3.5 7.6E-05 29.1 6.6 70 81-182 4-73 (95)
419 PRK07688 thiamine/molybdopteri 87.2 9.3 0.0002 33.7 10.7 80 79-165 23-125 (339)
420 PF03807 F420_oxidored: NADP o 87.1 1 2.2E-05 31.4 3.9 85 83-187 2-91 (96)
421 KOG0821 Predicted ribosomal RN 87.0 1.5 3.3E-05 36.1 5.1 61 78-142 49-109 (326)
422 PLN02586 probable cinnamyl alc 87.0 12 0.00026 33.0 11.5 95 79-190 183-278 (360)
423 PRK06249 2-dehydropantoate 2-r 86.9 2.6 5.6E-05 36.5 7.0 34 155-188 71-104 (313)
424 PRK12921 2-dehydropantoate 2-r 86.8 3.7 8E-05 35.1 7.9 34 155-188 67-100 (305)
425 PRK08133 O-succinylhomoserine 86.7 11 0.00025 33.7 11.3 122 64-192 60-185 (390)
426 PF05206 TRM13: Methyltransfer 86.7 4 8.7E-05 34.5 7.8 39 79-117 18-60 (259)
427 COG0287 TyrA Prephenate dehydr 86.6 3.6 7.8E-05 35.2 7.6 89 81-187 4-95 (279)
428 PF02558 ApbA: Ketopantoate re 86.4 0.98 2.1E-05 34.3 3.7 92 84-188 2-99 (151)
429 cd08277 liver_alcohol_DH_like 86.3 9.4 0.0002 33.6 10.4 101 77-190 182-286 (365)
430 PRK05703 flhF flagellar biosyn 86.3 26 0.00056 31.9 13.7 77 81-165 222-308 (424)
431 KOG0022 Alcohol dehydrogenase, 86.3 5.7 0.00012 34.6 8.4 106 74-192 187-296 (375)
432 cd08263 Zn_ADH10 Alcohol dehyd 86.2 6.2 0.00013 34.6 9.3 98 78-188 186-285 (367)
433 PRK06460 hypothetical protein; 86.2 12 0.00027 33.2 11.2 122 65-193 45-170 (376)
434 cd00544 CobU Adenosylcobinamid 86.2 13 0.00027 29.3 10.0 128 87-228 7-156 (169)
435 cd08243 quinone_oxidoreductase 86.2 8 0.00017 32.7 9.7 96 77-189 140-237 (320)
436 PF12242 Eno-Rase_NADH_b: NAD( 86.1 2.1 4.5E-05 29.0 4.6 35 78-112 37-72 (78)
437 PRK07049 methionine gamma-lyas 85.9 13 0.00027 33.9 11.2 129 64-193 82-220 (427)
438 cd05285 sorbitol_DH Sorbitol d 85.8 6 0.00013 34.3 8.9 100 76-188 159-263 (343)
439 cd05286 QOR2 Quinone oxidoredu 85.6 7.6 0.00016 32.6 9.3 100 75-188 132-233 (320)
440 PRK08134 O-acetylhomoserine am 85.6 12 0.00026 34.1 10.9 123 64-193 63-189 (433)
441 PF06460 NSP13: Coronavirus NS 85.6 4.5 9.8E-05 34.1 7.3 90 79-189 61-168 (299)
442 cd05213 NAD_bind_Glutamyl_tRNA 85.5 19 0.00041 31.2 11.7 97 78-192 176-274 (311)
443 cd08278 benzyl_alcohol_DH Benz 85.5 6.2 0.00013 34.7 8.9 96 77-188 184-283 (365)
444 PRK08293 3-hydroxybutyryl-CoA 85.5 7.6 0.00016 33.1 9.1 95 81-187 4-117 (287)
445 KOG3924 Putative protein methy 85.3 9 0.00019 34.3 9.4 111 77-194 190-312 (419)
446 cd08236 sugar_DH NAD(P)-depend 85.2 13 0.00029 32.0 10.7 101 75-189 155-257 (343)
447 COG4121 Uncharacterized conser 85.2 4.1 8.9E-05 34.2 7.0 106 79-188 58-206 (252)
448 PLN02256 arogenate dehydrogena 85.2 11 0.00023 32.7 9.9 95 71-186 27-123 (304)
449 TIGR02819 fdhA_non_GSH formald 85.2 7.2 0.00016 34.9 9.2 103 77-191 183-300 (393)
450 COG0541 Ffh Signal recognition 84.9 19 0.0004 32.8 11.3 124 80-223 100-239 (451)
451 TIGR01329 cysta_beta_ly_E cyst 84.9 14 0.00031 32.9 10.9 122 65-194 47-172 (378)
452 cd08290 ETR 2-enoyl thioester 84.8 9.7 0.00021 32.8 9.7 101 77-188 144-249 (341)
453 PLN02494 adenosylhomocysteinas 84.7 6.7 0.00014 36.1 8.7 87 78-188 252-339 (477)
454 PRK05690 molybdopterin biosynt 84.7 15 0.00034 30.6 10.4 80 79-165 31-131 (245)
455 TIGR01325 O_suc_HS_sulf O-succ 84.6 15 0.00033 32.7 11.0 122 64-192 53-178 (380)
456 cd08231 MDR_TM0436_like Hypoth 84.5 14 0.00029 32.3 10.6 98 79-189 177-279 (361)
457 PRK09496 trkA potassium transp 84.5 9.5 0.00021 34.6 9.8 94 82-187 2-96 (453)
458 PRK07417 arogenate dehydrogena 84.4 5.3 0.00011 34.0 7.7 85 82-186 2-87 (279)
459 PF10354 DUF2431: Domain of un 84.4 6.6 0.00014 30.8 7.6 100 86-189 3-124 (166)
460 PRK06084 O-acetylhomoserine am 84.4 20 0.00043 32.6 11.7 123 64-193 57-183 (425)
461 PRK05613 O-acetylhomoserine am 84.4 18 0.00038 33.1 11.4 124 64-194 68-196 (437)
462 cd08296 CAD_like Cinnamyl alco 84.4 6.6 0.00014 33.9 8.4 97 76-188 160-257 (333)
463 PRK07812 O-acetylhomoserine am 84.3 10 0.00022 34.6 9.8 123 64-192 68-194 (436)
464 cd08232 idonate-5-DH L-idonate 84.3 6.4 0.00014 34.0 8.3 94 79-188 165-260 (339)
465 PRK06522 2-dehydropantoate 2-r 84.2 13 0.00027 31.7 10.0 93 82-188 2-98 (304)
466 cd01492 Aos1_SUMO Ubiquitin ac 84.1 15 0.00032 29.6 9.8 91 79-177 20-131 (197)
467 PLN02353 probable UDP-glucose 84.1 12 0.00025 34.7 10.1 101 82-195 3-132 (473)
468 PRK05476 S-adenosyl-L-homocyst 84.0 22 0.00047 32.4 11.6 85 79-188 211-297 (425)
469 PLN02989 cinnamyl-alcohol dehy 83.9 7.5 0.00016 33.4 8.5 78 80-164 5-85 (325)
470 TIGR00692 tdh L-threonine 3-de 83.8 19 0.00041 31.1 11.1 99 78-189 160-260 (340)
471 PRK08655 prephenate dehydrogen 83.6 6.7 0.00015 35.8 8.4 87 82-187 2-89 (437)
472 PLN03209 translocon at the inn 83.6 7.7 0.00017 36.7 8.8 83 78-165 78-168 (576)
473 TIGR00936 ahcY adenosylhomocys 83.6 10 0.00022 34.4 9.3 86 78-188 193-280 (406)
474 cd05279 Zn_ADH1 Liver alcohol 83.4 12 0.00026 32.9 9.8 100 77-189 181-284 (365)
475 cd08291 ETR_like_1 2-enoyl thi 83.3 13 0.00028 31.9 9.7 97 79-189 142-241 (324)
476 cd00755 YgdL_like Family of ac 83.2 22 0.00048 29.5 10.6 81 79-165 10-111 (231)
477 TIGR02355 moeB molybdopterin s 83.1 20 0.00043 29.9 10.4 90 79-175 23-133 (240)
478 PRK08306 dipicolinate synthase 83.0 12 0.00026 32.2 9.3 94 79-195 151-245 (296)
479 cd08255 2-desacetyl-2-hydroxye 83.0 12 0.00027 31.1 9.3 94 75-188 93-188 (277)
480 PLN02427 UDP-apiose/xylose syn 82.8 3.8 8.3E-05 36.4 6.4 76 78-164 12-94 (386)
481 PRK08762 molybdopterin biosynt 82.7 16 0.00035 32.5 10.3 80 79-165 134-234 (376)
482 cd08260 Zn_ADH6 Alcohol dehydr 82.7 12 0.00026 32.4 9.4 99 76-188 162-262 (345)
483 TIGR01326 OAH_OAS_sulfhy OAH/O 82.5 21 0.00045 32.3 11.1 123 64-193 56-182 (418)
484 PF01408 GFO_IDH_MocA: Oxidore 82.5 12 0.00027 26.8 8.1 91 82-191 2-94 (120)
485 PRK08324 short chain dehydroge 82.4 15 0.00032 35.6 10.6 82 80-165 422-507 (681)
486 cd08265 Zn_ADH3 Alcohol dehydr 82.4 11 0.00023 33.5 9.2 100 78-189 202-306 (384)
487 PF02826 2-Hacid_dh_C: D-isome 82.4 9.3 0.0002 30.1 7.8 88 78-187 34-124 (178)
488 PRK06130 3-hydroxybutyryl-CoA 82.4 12 0.00027 32.1 9.3 95 80-187 4-112 (311)
489 PF11312 DUF3115: Protein of u 82.2 5.6 0.00012 34.5 6.8 110 80-190 87-242 (315)
490 KOG2015 NEDD8-activating compl 82.0 30 0.00065 30.4 10.9 88 81-176 41-149 (422)
491 PRK07503 methionine gamma-lyas 81.8 39 0.00084 30.4 13.2 123 64-193 64-190 (403)
492 PRK11199 tyrA bifunctional cho 81.8 11 0.00024 33.6 8.9 33 81-114 99-132 (374)
493 PRK15181 Vi polysaccharide bio 81.8 6.8 0.00015 34.3 7.5 79 79-164 14-98 (348)
494 KOG1201 Hydroxysteroid 17-beta 81.8 25 0.00054 30.3 10.5 84 78-165 36-123 (300)
495 PRK12439 NAD(P)H-dependent gly 81.7 4.4 9.5E-05 35.6 6.2 96 79-187 6-108 (341)
496 cd08279 Zn_ADH_class_III Class 81.7 11 0.00023 33.1 8.8 97 77-188 180-280 (363)
497 PRK08507 prephenate dehydrogen 81.6 6 0.00013 33.5 6.9 84 82-187 2-88 (275)
498 cd05281 TDH Threonine dehydrog 81.6 28 0.0006 30.1 11.3 97 78-188 162-260 (341)
499 PRK07904 short chain dehydroge 81.3 14 0.00031 30.6 9.0 85 78-164 6-95 (253)
500 cd08292 ETR_like_2 2-enoyl thi 81.2 19 0.00041 30.6 10.0 99 76-188 136-236 (324)
No 1
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.8e-47 Score=317.66 Aligned_cols=246 Identities=93% Similarity=1.435 Sum_probs=216.0
Q ss_pred CCCccccccccccccccccccccCCcHHHHHHHHHhcCCCCCcHHHHHHHHHHHhCCCCccccCHHHHHHHHHHHhhcCC
Q 025824 1 MASNAEDQQNQQGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNA 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 80 (247)
|+.+.+.|+.+-..++....+.....+++++|+.+++..+.+++.+.++++.+.++++|.|.+++.++++|..+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~a 80 (247)
T PLN02589 1 MANNEEQQQSQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINA 80 (247)
T ss_pred CCCCCcccccccccccCCccccccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCC
Confidence 45555555555555666665655667899999988776778899999999999999999999999999999999999999
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
++||||||++||||++|+++++++++|+++|.+++.++.|+++++++|+.++|+++.|++.+.++.+.+.+...++||+|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i 160 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI 160 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEE
Confidence 99999999999999999999988999999999999999999999999999999999999999999876432113689999
Q ss_pred EEcCCccchHHHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEeeecCCee
Q 025824 161 FVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGV 240 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lp~~dG~ 240 (247)
|+|+++..|..+++.+.++|+|||+|++||++|+|.|.+++....+++.+.+.+++++||+.+.++|+++++++|+|||+
T Consensus 161 FiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl 240 (247)
T PLN02589 161 FVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240 (247)
T ss_pred EecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCcc
Confidence 99999999999999999999999999999999999999886433233444456689999999999999999999999999
Q ss_pred EEEEEc
Q 025824 241 TICRRI 246 (247)
Q Consensus 241 ~i~~k~ 246 (247)
++++|+
T Consensus 241 ~l~~k~ 246 (247)
T PLN02589 241 TLCRRI 246 (247)
T ss_pred EEEEEe
Confidence 999996
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=4.6e-45 Score=296.05 Aligned_cols=199 Identities=46% Similarity=0.762 Sum_probs=181.1
Q ss_pred CCcHHHHHHHHHHHhCC-CCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHH
Q 025824 41 REPESMKELRELTAKHP-WNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYEL 119 (247)
Q Consensus 41 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~ 119 (247)
.+++.++++++.+.+.. ++.|.+++.++++|..+++..+|++||||||++|||+++|++++|++++|+++|++++.++.
T Consensus 6 ~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~ 85 (205)
T PF01596_consen 6 REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI 85 (205)
T ss_dssp CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence 58899999999998776 88899999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecccccccccC
Q 025824 120 GLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVA 199 (247)
Q Consensus 120 a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~ 199 (247)
|+++++++|+.++|+++.||+.+.++.+..++ ..++||+||+|+++.+|..+++.+.++|+|||+|++||++|+|.|.+
T Consensus 86 A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 86 ARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence 99999999999999999999999999886543 23589999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEeeecCCeeEEEEEc
Q 025824 200 PPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 246 (247)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lp~~dG~~i~~k~ 246 (247)
+... +.....+++||+++.++|+++++++|+|||++|++|+
T Consensus 165 ~~~~------~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 165 PDDE------DPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp TTGG------SHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred ccch------hhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 8542 3445669999999999999999999999999999996
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=3.4e-43 Score=295.40 Aligned_cols=212 Identities=42% Similarity=0.701 Sum_probs=194.4
Q ss_pred CcHHHHHHHHHhcCCCCCcHHHHHHHHHHHhCCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC
Q 025824 25 QSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDD 104 (247)
Q Consensus 25 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~ 104 (247)
..+.+++|+.++ ..+++.+.++++.+.+++++.|.+++.+++++..+++..++++||||||++|+|+++++.+++++
T Consensus 67 ~~~~i~~Y~~~~---~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~ 143 (278)
T PLN02476 67 LTPRLYDYVLSN---VREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPES 143 (278)
T ss_pred chHHHHHHHHhc---CCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCC
Confidence 467999999984 25889999999999999888889999999999999999999999999999999999999999888
Q ss_pred CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCe
Q 025824 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGG 184 (247)
Q Consensus 105 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG 184 (247)
++|+++|.+++.++.|+++++++|+.++|+++.||+.+.++.+..++ ..++||+||+|+++.+|+.+++.+.++|+|||
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~-~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GG 222 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG-EGSSYDFAFVDADKRMYQDYFELLLQLVRVGG 222 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc-cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999998875332 23689999999999999999999999999999
Q ss_pred EEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEeeecCCeeEEEEEc
Q 025824 185 VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 246 (247)
Q Consensus 185 ~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lp~~dG~~i~~k~ 246 (247)
+|++||++|+|.+.++... +..+.++++|++++.++|+++++++|+|||+++++|+
T Consensus 223 vIV~DNvL~~G~V~d~~~~------d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 223 VIVMDNVLWHGRVADPLVN------DAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred EEEEecCccCCcccCcccC------CHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 9999999999999988653 2336799999999999999999999999999999985
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=6.1e-42 Score=284.56 Aligned_cols=222 Identities=57% Similarity=0.952 Sum_probs=198.7
Q ss_pred CCcHHHHHHHHHhcCCCCCcHHHHHHHHHHHhC--CCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 025824 24 LQSDALYQYILETSVYPREPESMKELRELTAKH--PWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAL 101 (247)
Q Consensus 24 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~ 101 (247)
...+.+++|+.+++.++.+++.+.++++.+.++ ..+.|.+++.++++|..++...++++|||+|||+|+++++++.++
T Consensus 11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhC
Confidence 445799999988766678899999999999877 457788899999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCC
Q 025824 102 PDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVK 181 (247)
Q Consensus 102 ~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~ 181 (247)
+++++++++|+++++++.|+++++.+|+.++++++.||+.+.++.+..++ ..++||+||+|+++..|..+++.+.++|+
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-~~~~fD~VfiDa~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-PKPEFDFAFVDADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-CCCCCCEEEECCCHHHHHHHHHHHHHhcC
Confidence 87899999999999999999999999999999999999999888774321 13689999999999999999999999999
Q ss_pred CCeEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEeeecCCeeEEEEEcC
Q 025824 182 VGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRIK 247 (247)
Q Consensus 182 ~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lp~~dG~~i~~k~~ 247 (247)
|||+|++||++|+|.+.++... ..++.+....++++|++++..+|+++++++|+|||+++++|++
T Consensus 170 ~GG~ii~dn~l~~G~v~~~~~~-~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 170 VGGIIAFDNTLWFGFVAQEEDE-VPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred CCeEEEEEcCCcCCeecCcccc-cchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 9999999999999999988642 2233455678999999999999999999999999999999974
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=3.4e-42 Score=279.06 Aligned_cols=212 Identities=35% Similarity=0.587 Sum_probs=192.2
Q ss_pred CCcHHHHHHHHHhcCCCCCcHHHHHHHHHHHhCCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 025824 24 LQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPD 103 (247)
Q Consensus 24 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~ 103 (247)
...+.+.+|+.++.. +..+..++++++++.+++.|++. ++++++|..+++..++++||||||+.|||++|||.++|+
T Consensus 7 ~~~~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~~--~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~ 83 (219)
T COG4122 7 NMDEDLYDYLEALIP-GEPPALLAELEEFARENGVPIID--PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD 83 (219)
T ss_pred cchHHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCCC--hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC
Confidence 346789999998752 23677889999999999998776 999999999999999999999999999999999999998
Q ss_pred CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE-ecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCC
Q 025824 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKV 182 (247)
Q Consensus 104 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~ 182 (247)
++++++||+++++++.|++|++++|+.++|+++. ||+.+.+... ..++||+||+|++|.+|+++|+.+.++|+|
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999 6999888763 268999999999999999999999999999
Q ss_pred CeEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEeeecCCeeEEEEEcC
Q 025824 183 GGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRIK 247 (247)
Q Consensus 183 gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lp~~dG~~i~~k~~ 247 (247)
||+|++||++|+|.+.++... ..+.....++.|++++.++|+++++++|+|||+++++|..
T Consensus 159 GGliv~DNvl~~G~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 159 GGLIVADNVLFGGRVADPSIR----DARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred CcEEEEeecccCCccCCccch----hHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeecC
Confidence 999999999999999888531 2356677899999999999999999999999999999963
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-42 Score=275.83 Aligned_cols=219 Identities=55% Similarity=0.927 Sum_probs=203.6
Q ss_pred ccCCcHHHHHHHHHhcCCCCCcHHHHHHHHHHHhCC--CCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh
Q 025824 22 SLLQSDALYQYILETSVYPREPESMKELRELTAKHP--WNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATAL 99 (247)
Q Consensus 22 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~ 99 (247)
.+..++.+++|+++++..+.+++.++++++.+..++ +..|.+++++++|+..+++..+|+++||||++||||++.+|.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Al 93 (237)
T KOG1663|consen 14 LILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVAL 93 (237)
T ss_pred cccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHH
Confidence 677889999999999999999999999999999884 557899999999999999999999999999999999999999
Q ss_pred hCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhc
Q 025824 100 ALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIEL 179 (247)
Q Consensus 100 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~ 179 (247)
++|++|+|+++|++++.++.+.+..+.+|+.++|++++|++.+.++++.+.+ +.++|||+|+|++|.+|..+++.+.++
T Consensus 94 alp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tfDfaFvDadK~nY~~y~e~~l~L 172 (237)
T KOG1663|consen 94 ALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTFDFAFVDADKDNYSNYYERLLRL 172 (237)
T ss_pred hcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCceeEEEEccchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998876 568999999999999999999999999
Q ss_pred CCCCeEEEEecccccccccCCCCCcchhhhchHHHHHH---HHHHHHHcCCCeeEEeeecCCeeEEEEEc
Q 025824 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVL---ELNKALAADPRIEICMLPVGDGVTICRRI 246 (247)
Q Consensus 180 L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~lp~~dG~~i~~k~ 246 (247)
||+||+|++||++|+|.+.+|+..- ....+.++ +||+++..||+++.+++|+|||+.+++|+
T Consensus 173 lr~GGvi~~DNvl~~G~v~~p~~~~-----~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 173 LRVGGVIVVDNVLWPGVVADPDVNT-----PVRGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred cccccEEEEeccccCCcccCcccCC-----CcchhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 9999999999999999777776532 22456666 99999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=7.7e-18 Score=123.98 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=87.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+|||+|||+|..++.+++..+ +++|+++|+++++++.|++++...+..++++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 467999999999999999999655 8999999999999999999998788889999999999 333322 46899
Q ss_pred EEEEcC-Ccc------chHHHHHHHHhcCCCCeEEEEec
Q 025824 159 FIFVDA-DKD------NYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 159 ~v~id~-~~~------~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
+|++.. ... ....+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 322 23456899999999999999863
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.72 E-value=3.1e-16 Score=123.36 Aligned_cols=118 Identities=25% Similarity=0.247 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
++.-.+.-..+...+..+++|||||+|..++.++.. .+.+++++||.+++.++..++|.++.|+ ++++++.|++.+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 444444444555667789999999999999999954 4599999999999999999999999995 78999999999988
Q ss_pred HHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.+ .+||.||+.+. .+....++.++..|+|||.||++-+.
T Consensus 98 ~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 PDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 753 48999999998 88999999999999999999987654
No 9
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=4.2e-16 Score=127.86 Aligned_cols=116 Identities=23% Similarity=0.318 Sum_probs=96.2
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+.|.....+...+...+..+|||||||+|+.+..+++..+++++|+++|+++++++.|+++++..++ ++++++++|+.+
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence 5566666666666777789999999999999999998877678999999999999999999999887 579999999876
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+. .++||+|++++.....+ +.+.+.|+|||.+++.
T Consensus 139 ~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 GYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 5432 47899999988755444 4567789999999874
No 10
>PLN03075 nicotianamine synthase; Provisional
Probab=99.69 E-value=2.1e-16 Score=134.09 Aligned_cols=120 Identities=13% Similarity=0.169 Sum_probs=99.0
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHH-cCCCCcEEEEEecc
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQK-AGVAHKIDFREGPA 140 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~i~~~~gd~ 140 (247)
+.+..+.++..+... ++++|+||||| .|++++.++....++++++++|+++++++.|+++++. .++.++++|+.+|+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da 186 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV 186 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence 445566666666555 88999999999 5566777776655589999999999999999999965 88888999999999
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcC----CccchHHHHHHHHhcCCCCeEEEEec
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDA----DKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~----~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
.+..+. .+.||+||+++ ++..+...++.+.+.|+|||++++--
T Consensus 187 ~~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 187 MDVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hhcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 875332 36899999986 35788999999999999999999865
No 11
>PRK04457 spermidine synthase; Provisional
Probab=99.69 E-value=2e-15 Score=127.57 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=93.5
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhh
Q 025824 72 NMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 72 ~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~ 151 (247)
..+....++++|||||||+|.++.+++...| +.+++++|++++.++.|++++...+..++++++++|+.+++...
T Consensus 59 ~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---- 133 (262)
T PRK04457 59 GFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---- 133 (262)
T ss_pred HHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC----
Confidence 3344445788999999999999999998886 89999999999999999999876555578999999999887653
Q ss_pred cCCCceeEEEEcCCcc-------chHHHHHHHHhcCCCCeEEEEe
Q 025824 152 KNHGSFDFIFVDADKD-------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~-------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|++|+... ...++++.+.+.|+|||+++++
T Consensus 134 --~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 --RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred --CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 46899999997532 1368999999999999999985
No 12
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.69 E-value=8.6e-16 Score=124.77 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=95.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
...+..+|||+|||+|..++.++...+++++|+++|+++++++.++++++..++.++++++.+|+.+.++.+ .+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~ 110 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE 110 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC
Confidence 445668999999999999999998776578999999999999999999999987678999999998766543 46
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
.||+||++.....+..+++.+.+.|+|||.++++..
T Consensus 111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 899999987666778899999999999999998644
No 13
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.69 E-value=9.5e-16 Score=114.52 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=90.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
...+..+|||+|||+|..+..+++..+ .++++++|+++.+++.++++++..++. +++++.+|+.+.++.. .+
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~ 87 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LP 87 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cC
Confidence 334567999999999999999999887 589999999999999999999988774 6899999886544432 46
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+||+|+++.....+..+++.+.+.|+|||.+++.
T Consensus 88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 8999999887667788999999999999999975
No 14
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.68 E-value=5.8e-16 Score=126.44 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=91.3
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
..+...+...+..+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++...++.++++++.+|+.+.++.
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-- 139 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-- 139 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--
Confidence 333333444456799999999999999999988667899999999999999999999998877899999999765542
Q ss_pred hhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 149 QDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..+||+|++++.....+ +.+.+.|+|||.|++..
T Consensus 140 -----~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 -----HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIPV 173 (205)
T ss_pred -----CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEEE
Confidence 46899999998754443 56778999999999853
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=1.5e-15 Score=121.48 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=87.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..++.+|||+|||+|..++.++...+ +++|+++|.++++++.+++++++.++. +++++++|+.+... .++
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~--------~~~ 109 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH--------EEQ 109 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc--------cCC
Confidence 34578999999999999999987654 789999999999999999999998874 59999999976421 478
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
||+|++++ ..++...++.+.++|+|||++++.
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999987 556778889999999999999964
No 16
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.67 E-value=1.3e-15 Score=125.37 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=108.7
Q ss_pred cCCcHHHHHHHHHhcCCCCCcHHH-HHHHHHHH-hCCCCc----cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 025824 23 LLQSDALYQYILETSVYPREPESM-KELRELTA-KHPWNI----MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLA 96 (247)
Q Consensus 23 ~~~~~~~~~y~~~~~~~~~~~~~l-~~~~~~~~-~~~~~~----~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~ 96 (247)
...+.++.+.+.+ .|++ +.+ ......+- ...+++ ..+.|.....+...+...+..+|||||||+|+.+..
T Consensus 19 ~v~~~~v~~a~~~---v~R~-~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~ 94 (215)
T TIGR00080 19 YIKSKRVIDALLS---VPRE-EFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAV 94 (215)
T ss_pred CcCCHHHHHHHHh---CChh-hhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHH
Confidence 3567777777765 2333 332 22222221 111221 123344444455555666778999999999999999
Q ss_pred HHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHH
Q 025824 97 TALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRL 176 (247)
Q Consensus 97 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~ 176 (247)
+++..+++++|+++|+++++++.|+++++..++ ++++++++|+.+.++. .++||+|++++.....+ +.+
T Consensus 95 la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~~---~~~ 163 (215)
T TIGR00080 95 LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKIP---EAL 163 (215)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCccccc---HHH
Confidence 999876678999999999999999999999988 5799999999765432 36899999998755443 557
Q ss_pred HhcCCCCeEEEEe
Q 025824 177 IELVKVGGVIGYD 189 (247)
Q Consensus 177 ~~~L~~gG~lv~d 189 (247)
.+.|+|||++++.
T Consensus 164 ~~~L~~gG~lv~~ 176 (215)
T TIGR00080 164 IDQLKEGGILVMP 176 (215)
T ss_pred HHhcCcCcEEEEE
Confidence 7899999999974
No 17
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=3.5e-16 Score=127.43 Aligned_cols=139 Identities=20% Similarity=0.303 Sum_probs=109.9
Q ss_pred CCcHHHHHHHHHHHhCCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHH
Q 025824 41 REPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120 (247)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a 120 (247)
.....+.+++..+.+.+||.. ++....+...+.. +..+|||+|||+|..+..++...+ ..+++++|+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a 80 (202)
T PRK00121 6 RRRGRLTKGQQRAIEELWPRL--SPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKA 80 (202)
T ss_pred hhccccccchhhhhcccchhh--cCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHH
Confidence 444556778888888888754 4677777777665 678999999999999999998876 68999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCc------c-----chHHHHHHHHhcCCCCeEEEEe
Q 025824 121 LPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADK------D-----NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 121 ~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~------~-----~~~~~l~~~~~~L~~gG~lv~d 189 (247)
++++...++ .+++++++|+.+.++... ..++||.|++.... . ....+++.+.+.|+|||++++.
T Consensus 81 ~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 81 LKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 999998877 579999999944444321 24689999985321 0 1567899999999999999863
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=2e-15 Score=121.18 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
++.+|||+|||+|..++.++...+ +++|+++|+++++++.|+++++..++.+ ++++++|+.+... .++||
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fD 114 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFD 114 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCcc
Confidence 368999999999999999998766 7899999999999999999999999854 9999999976422 36899
Q ss_pred EEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 159 FIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 159 ~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+|++++. .++..+++.+.+.|+|||++++-
T Consensus 115 lV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 115 VVTSRAV-ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred EEEEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999764 46788999999999999999964
No 19
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=3e-15 Score=120.50 Aligned_cols=116 Identities=23% Similarity=0.260 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+....++...+...+..+|||+|||+|..++.+++..+ +++|+++|+++++++.+++++...++ ++++++.+|+...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~- 93 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE- 93 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh-
Confidence 33344443444555778999999999999999998875 78999999999999999999998887 4699999987432
Q ss_pred HHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+ .++||+||++.....+..+++.+.+.|+|||++++..+
T Consensus 94 --~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 94 --L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred --c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 1 35799999988766778899999999999999998654
No 20
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2e-15 Score=123.81 Aligned_cols=117 Identities=16% Similarity=0.259 Sum_probs=105.1
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+.|....++.......+..+|+|.|+|+|..+..|+.++.+.++|+++|+.+++++.|++|++.+++.+++++..+|..+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 34667777777888889999999999999999999999887899999999999999999999999998889999999987
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
... .+.||.||+|-+ +.+++++.+...|+|||.+++-
T Consensus 158 ~~~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 158 GID--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred ccc--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEE
Confidence 754 359999999985 4689999999999999999964
No 21
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-15 Score=122.08 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=96.2
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 62 TTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 62 ~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
.+.|.....+..++...+..+|||||||+||.+..|++.. ++|+++|+.++..+.|+++++..|+.+ |.+++||..
T Consensus 55 is~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~ 130 (209)
T COG2518 55 ISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGS 130 (209)
T ss_pred ecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcc
Confidence 3556666677777788888999999999999999999875 499999999999999999999999955 999999998
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.-.+. ..+||.|++.+.....+ +.+...|++||.+++-
T Consensus 131 ~G~~~-------~aPyD~I~Vtaaa~~vP---~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 131 KGWPE-------EAPYDRIIVTAAAPEVP---EALLDQLKPGGRLVIP 168 (209)
T ss_pred cCCCC-------CCCcCEEEEeeccCCCC---HHHHHhcccCCEEEEE
Confidence 77664 58999999998755554 3455688999999973
No 22
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=4.4e-15 Score=134.20 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
.....++..++...+..+|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+. +++++++|+.+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~ 316 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLL 316 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcc
Confidence 344555555565566789999999999999999998766789999999999999999999999985 5999999987653
Q ss_pred HHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEecccccccccC
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDNTLWNGSVVA 199 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~ 199 (247)
..... ..++||.|++|++++. ....++.+.+.|||||.|+.... ...
T Consensus 317 ~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc-----si~ 388 (434)
T PRK14901 317 ELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC-----TLH 388 (434)
T ss_pred ccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC-----CCC
Confidence 21100 1368999999986321 23567788899999999986433 333
Q ss_pred CCCCcchhhhchHHHHHHHHHHHHHcCCCeeEE-----eeec---CCeeEEEEEc
Q 025824 200 PPDAPLRKYVRYYRDFVLELNKALAADPRIEIC-----MLPV---GDGVTICRRI 246 (247)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~lp~---~dG~~i~~k~ 246 (247)
++++ ......++.++|+|... ++|- +||+.+++-+
T Consensus 389 ~~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 389 PAEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred hhhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 4332 13334445567777643 4553 5999998654
No 23
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=2.6e-15 Score=123.94 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=94.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
++.+|||+|||||-.++.+++..+ .++|+++|+++.|++.|++.+...+..+ ++++++|+.+. | + ++++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccC
Confidence 678999999999999999999988 8999999999999999999999988866 99999999754 4 3 479999
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
+|.+... ..++...|+++.|.|||||.+++.+..-
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 9998765 4578899999999999999999877654
No 24
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=1e-14 Score=131.51 Aligned_cols=121 Identities=25% Similarity=0.371 Sum_probs=97.4
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
++.....++..++...+..+|||+|||+|..|..+++.++++++|+++|+++++++.+++++++.|+. +++++++|+.+
T Consensus 221 ~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~ 299 (431)
T PRK14903 221 VQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAER 299 (431)
T ss_pred EECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 34555666666666677789999999999999999998876789999999999999999999999984 59999999875
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEec
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..... .++||.|++|+++.. ..+.+..+.+.|+|||.++..-
T Consensus 300 l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 300 LTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred hhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43222 468999999987421 1345777889999999998643
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=2.8e-15 Score=116.66 Aligned_cols=108 Identities=25% Similarity=0.350 Sum_probs=90.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..+..++..+.++++++++|+++++++.|++.++..++. ++++.++|+.+ ++... .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 35679999999999999999966555899999999999999999999999986 89999999988 54210 2689
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|+|+.... .......++.+.++|++||++++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999865 344557889999999999999987665
No 26
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.63 E-value=8.5e-15 Score=118.71 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=97.1
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+.++...++...+...+..+|||+|||+|..++.++...+ +++|+++|+++++++.++++++..++ ++++++.+|+.+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~ 101 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE 101 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence 3466666666666666678999999999999999987655 68999999999999999999999887 469999999876
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
.++.+ ...+|.++++.. ......++.+.+.|+|||.+++...
T Consensus 102 ~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 102 CLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 55443 345788888764 3457889999999999999998743
No 27
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=2.6e-15 Score=124.66 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=82.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
.....++.+|||+|||+|..+..+++..++.++|+++|+++++++.|++.+...+.. +|+++++|+.+. +- .
T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~------~ 113 (233)
T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PF------P 113 (233)
T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-------
T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cC------C
Confidence 344567789999999999999999998877899999999999999999999988874 899999999764 32 2
Q ss_pred CCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 154 HGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 154 ~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+++||+|++... ..+....++++.+.|||||.+++-+..
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 689999998754 345778999999999999999986653
No 28
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.62 E-value=3.4e-16 Score=114.38 Aligned_cols=102 Identities=35% Similarity=0.580 Sum_probs=52.5
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 84 MEIGVYTGYSLLATALALPDDG--KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 84 LEiG~g~G~st~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
|||||+.|.|+.++++++++.+ +++++|..+. .+.+++++++.++.++++++.++..+.++.+. .++||+||
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999987654 8999999996 44566677767777889999999999888773 37999999
Q ss_pred EcCCc--cchHHHHHHHHhcCCCCeEEEEecc
Q 025824 162 VDADK--DNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 162 id~~~--~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+|+++ +.....++.+.+.|+|||+|++||+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99974 6677889999999999999999984
No 29
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.62 E-value=2.5e-15 Score=122.46 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=89.5
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+.|..-..+...+...+..+|||||||+||.|..++....+.++|+++|++++.++.|++++...+. .+++++++|...
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~ 134 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSE 134 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhh
Confidence 4465555555555677889999999999999999999887678999999999999999999999988 479999999987
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.++. ..+||.|++.+.....+ ..+.+.|++||++|+
T Consensus 135 g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 135 GWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVA 170 (209)
T ss_dssp TTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred cccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEE
Confidence 6654 47899999998765554 446678999999997
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=7.4e-15 Score=116.47 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 68 GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 68 ~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
..+|...+...+.++|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++|++..++.+ ++++.+|..+.++
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-- 95 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-- 95 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--
Confidence 33555555555888999999999999999999876 6789999999999999999999999876 9999999887654
Q ss_pred HhhhcCCCceeEEEEcCCc--------cchHHHHHHHHhcCCCCeEEEE
Q 025824 148 IQDEKNHGSFDFIFVDADK--------DNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~--------~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.++||+|+++.+. .....+++.+.++|+|||.+++
T Consensus 96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 4799999998762 1346778888899999999864
No 31
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.61 E-value=1.6e-14 Score=131.01 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=97.7
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+......++...+...+..+|||+|||+|..++.+++.++++++|+++|+++++++.+++++++.|+.+ ++++++|+.+
T Consensus 234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~ 312 (444)
T PRK14902 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARK 312 (444)
T ss_pred EEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccc
Confidence 345556667666666677899999999999999999987557899999999999999999999999854 9999999977
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEec
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
....+ .++||+||+|++... ...+++.+.+.|+|||.++...
T Consensus 313 ~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 313 VHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 54433 368999999986321 1346778889999999998543
No 32
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.61 E-value=2.8e-14 Score=120.86 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=97.6
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+......+...++...+..+|||+|||+|..|..+++.+++.++|+++|+++.+++.+++++++.|+. +++++.+|+..
T Consensus 55 ~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~ 133 (264)
T TIGR00446 55 IQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRV 133 (264)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHH
Confidence 33445555555555566789999999999999999998876789999999999999999999999984 69999999865
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEecccccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDNTLWNGSV 197 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~~~~~g~~ 197 (247)
... . .+.||.|++|++... ...+++.+.++|+|||+|+ |..+.
T Consensus 134 ~~~-~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-----Ystcs 201 (264)
T TIGR00446 134 FGA-A------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV-----YSTCS 201 (264)
T ss_pred hhh-h------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-----EEeCC
Confidence 422 1 356999999986332 1347777789999999998 44444
Q ss_pred cCCCC
Q 025824 198 VAPPD 202 (247)
Q Consensus 198 ~~~~~ 202 (247)
..+.+
T Consensus 202 ~~~~E 206 (264)
T TIGR00446 202 LEPEE 206 (264)
T ss_pred CChHH
Confidence 44543
No 33
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.60 E-value=6.4e-14 Score=119.83 Aligned_cols=118 Identities=14% Similarity=0.239 Sum_probs=94.0
Q ss_pred cCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe
Q 025824 63 TSADEGQFLNMLLK----LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 63 ~~~~~~~~l~~l~~----~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
..+++..++...+. ..++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+...++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34566666665543 12457899999999999999998876 78999999999999999999999998778999999
Q ss_pred cchhhhHHHHhhhcCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 139 PALPVLDLLIQDEKNHGSFDFIFVDADK----------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 139 d~~~~l~~l~~~~~~~~~fD~v~id~~~----------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
|+.+.++ .++||+|+++.+. ..+..++..+.+.|+|||.++++
T Consensus 180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9866442 3579999998541 11245677777899999999975
No 34
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=2.8e-14 Score=129.39 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
.....+...++...+..+|||+|||+|..+..+++.++..++|+++|+++++++.+++++++.|+. +++++++|+.+..
T Consensus 236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~ 314 (445)
T PRK14904 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS 314 (445)
T ss_pred CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc
Confidence 334445545555556689999999999999999988766789999999999999999999999984 6999999997653
Q ss_pred HHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEec
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
+ .++||.|++|+++.. ...++..+.+.|+|||.++...
T Consensus 315 ~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 315 P--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred c--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 468999999976311 1246778889999999999743
No 35
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.59 E-value=1.9e-14 Score=119.79 Aligned_cols=118 Identities=18% Similarity=0.238 Sum_probs=95.0
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+.|....++-..+...+..+|||.|+|+|..|..|++++.+.|+|+++|..+++++.|+++++..|+.+++++.++|..+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 45777778888888889999999999999999999999888999999999999999999999999998899999999864
Q ss_pred -hhH-HHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcC-CCCeEEEE
Q 025824 143 -VLD-LLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELV-KVGGVIGY 188 (247)
Q Consensus 143 -~l~-~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L-~~gG~lv~ 188 (247)
.++ .+ ...+|.||+|-+. .+..+..+.+.| ++||.|++
T Consensus 104 ~g~~~~~------~~~~DavfLDlp~--Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 104 EGFDEEL------ESDFDAVFLDLPD--PWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp G--STT-------TTSEEEEEEESSS--GGGGHHHHHHHE-EEEEEEEE
T ss_pred ccccccc------cCcccEEEEeCCC--HHHHHHHHHHHHhcCCceEEE
Confidence 221 11 4689999999863 466788888999 89999996
No 36
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.59 E-value=5.5e-14 Score=115.34 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=92.2
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 62 TTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 62 ~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
.+.|.....+..++...+..+|||+|||+|+.+..+++.. ++++++|+++++++.++++++..++. +++++.+|+.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcc
Confidence 3456666666666666777899999999999999888763 48999999999999999999998874 5999999986
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 65432 3689999999875444 35677899999999974
No 37
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.59 E-value=4.4e-14 Score=127.47 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
.....++...+...+..+|||+|||+|+.|..+++.++ +++|+++|+++++++.+++++++.|+..++++..+|+.+..
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 44556666666666778999999999999999999887 78999999999999999999999998644455667765332
Q ss_pred HHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEecc
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
... ..++||.||+|+++.. ....++.+.++|||||.++....
T Consensus 303 ~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 303 QWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 110 1468999999976321 14577788899999999996543
No 38
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=2.3e-14 Score=120.85 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=86.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|++++...|+.++++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 35679999999999999999875 57999999999999999999999988788999999997653322 5789
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|++... ..+....++.+.+.|+|||++++
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 99998754 23556789999999999999976
No 39
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.57 E-value=3.1e-14 Score=118.19 Aligned_cols=109 Identities=18% Similarity=0.394 Sum_probs=90.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
.+...+..+|||+|||+|..+..+++..+++++|+++|+++++++.+++++...+. ++++++++|+.+.. + .
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-----~ 111 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-----D 111 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-----C
Confidence 33444567999999999999999999876678999999999999999999988776 57999999987542 1 2
Q ss_pred CCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEec
Q 025824 154 HGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 154 ~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
.++||+|++... ..++...++.+.+.|+|||.+++-+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 578999998643 3456788899999999999998754
No 40
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=1.1e-13 Score=124.97 Aligned_cols=119 Identities=21% Similarity=0.244 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
....+.+...++...+..+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+. ++++++|+.+.
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccc
Confidence 344455555566666778999999999999999999876 489999999999999999999998873 78999998754
Q ss_pred hHHHHhhhcCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcCCCCeEEEEec
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADKDN-------------------------YLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~~~-------------------------~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
...+ ..++||.|++|++... ...+++.+.+.|+|||.++...
T Consensus 306 ~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 306 AQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred hhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 3211 1468999999986321 1256778889999999999644
No 41
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=5.9e-14 Score=121.19 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec
Q 025824 64 SADEGQFLNMLLK-L-V--NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 64 ~~~~~~~l~~l~~-~-~--~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
.+++..++...+. . . ++.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|++|++..++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 3556666665443 1 1 236899999999999999998876 789999999999999999999999987789999999
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADK----------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~----------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.+.++ .++||+|+++.+. ..+..+++.+.+.|+|||.++++
T Consensus 193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 876443 3579999987541 11345677778899999999975
No 42
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=2.5e-14 Score=106.03 Aligned_cols=101 Identities=24% Similarity=0.393 Sum_probs=85.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
.+|||+|||+|..++.+++.. ..+++++|+++..++.++.++...++.++++++++|+.+..+.+ ..++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 589999999999999999875 58999999999999999999999999889999999998776433 36899999
Q ss_pred EEcCCcc-----------chHHHHHHHHhcCCCCeEEEE
Q 025824 161 FVDADKD-----------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 161 ~id~~~~-----------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+.+.+.. .+..+++.+.++|+|||++++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9987622 246788999999999999985
No 43
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.56 E-value=3.6e-14 Score=117.29 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhH
Q 025824 66 DEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
Q Consensus 66 ~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~ 145 (247)
..+-+|...+.....++|||+|||+|..++.+++..+ ..++++||+.+++++.|+++++.+++.+||+++++|..+..+
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 4577888888888899999999999999999999876 499999999999999999999999999999999999988776
Q ss_pred HHHhhhcCCCceeEEEEcCCc---------------------cchHHHHHHHHhcCCCCeEEEE
Q 025824 146 LLIQDEKNHGSFDFIFVDADK---------------------DNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 146 ~l~~~~~~~~~fD~v~id~~~---------------------~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.. ...+||+|+++.+. ....++++.+.++|||||.+.+
T Consensus 110 ~~-----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 110 AL-----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred cc-----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 55 24579999998651 1135677777899999999985
No 44
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=8e-14 Score=117.90 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=87.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHH--cCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK--AGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
....+..+|||+|||+|..+..+++..++.++|+++|+++++++.|++.... .+...+++++++|+.+. +-
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~------ 141 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF------ 141 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC------
Confidence 3445678999999999999999998776578999999999999999876542 22235799999998654 21
Q ss_pred CCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 153 NHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 153 ~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
.+++||+|++... ..+....+.++.+.|||||.+++-+..
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 2578999987643 345678899999999999999887654
No 45
>PRK00811 spermidine synthase; Provisional
Probab=99.55 E-value=2.6e-13 Score=115.98 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=86.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C--CCcEEEEEecchhhhHHHHhhhc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V--AHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~--~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
..++++||+||||.|..+..+++. +...+|+++|+++++++.|++++...+ . .++++++.+|+.+.+...
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 357899999999999999999875 335799999999999999999997542 2 468999999999877642
Q ss_pred CCCceeEEEEcCCcc-------chHHHHHHHHhcCCCCeEEEEe
Q 025824 153 NHGSFDFIFVDADKD-------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 153 ~~~~fD~v~id~~~~-------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996421 1256788999999999999963
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.54 E-value=4.2e-14 Score=119.96 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=84.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
.+...+..+|||||||.|..++++++.. +++|+++.+|++..+.+++.++..|+.+++++..+|..+.
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------- 124 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------- 124 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------
Confidence 3345677899999999999999999986 6899999999999999999999999999999999987653
Q ss_pred CCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 154 HGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 154 ~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
..+||.|+.-.. ..++..+|+.+.++|+|||.++++.+...
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 359999875432 46789999999999999999998866543
No 47
>PRK01581 speE spermidine synthase; Validated
Probab=99.53 E-value=2.9e-13 Score=117.56 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=85.6
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH--H---HcCC-CCcEEEEEecchhhhHHHH
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVI--Q---KAGV-AHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~g~-~~~i~~~~gd~~~~l~~l~ 148 (247)
....+|++||+||||.|+.+..+++. ++..+|+++|+++++++.|+++. . +..+ .++++++.+|+.+++...
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 34567899999999999988888765 33679999999999999999732 2 1122 368999999999988753
Q ss_pred hhhcCCCceeEEEEcCCcc-------c-hHHHHHHHHhcCCCCeEEEEe
Q 025824 149 QDEKNHGSFDFIFVDADKD-------N-YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~~~-------~-~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+||+|.... - ..++++.+.+.|+|||++++.
T Consensus 224 -----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 -----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred -----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999997522 1 156889999999999999874
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.1e-13 Score=116.41 Aligned_cols=120 Identities=19% Similarity=0.246 Sum_probs=100.7
Q ss_pred ccCHHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe
Q 025824 62 TTSADEGQFLNMLL---KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 62 ~~~~~~~~~l~~l~---~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
++++.+..-++.++ .+.++++|||||||.|..++++|+.. +.+|+++++|++..+.+++.++..|++.++++...
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~ 129 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ 129 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec
Confidence 44455544444444 45678999999999999999999987 68999999999999999999999999889999999
Q ss_pred cchhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 139 PALPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 139 d~~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
|..++ .++||-|+.-+. ++++..+|+.+.+.|+|||.++.+.+.-
T Consensus 130 d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 130 DYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 98765 456999985432 6789999999999999999999987754
No 49
>PLN02366 spermidine synthase
Probab=99.53 E-value=3.5e-13 Score=116.03 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=87.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C-CCcEEEEEecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
..++++||+||||.|..+..+++. ++..+|+.+|++++.++.+++++...+ + .+|++++.+|+.+++... .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~ 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----P 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----c
Confidence 357899999999999999999876 435799999999999999999987542 2 358999999999887653 1
Q ss_pred CCceeEEEEcCCcc-------chHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDADKD-------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~-------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+||+|.... ...++++.+.+.|+|||+++..
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 46899999997632 1356899999999999999853
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=1.3e-13 Score=111.70 Aligned_cols=105 Identities=25% Similarity=0.343 Sum_probs=87.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
....++||||||+|..+..++...| +.+++++|+++++++.|++++...++. +++++++|+.+.+..+. ..+.+
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence 3567899999999999999999886 789999999999999999999998884 79999999987654432 13589
Q ss_pred eEEEEcCCcc-----c------hHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKD-----N------YLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~-----~------~~~~l~~~~~~L~~gG~lv~ 188 (247)
|.|+++.+.. + ...+++.+.+.|+|||.|++
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 9999875311 1 25789999999999999986
No 51
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=1.4e-13 Score=120.75 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=88.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++.+|||||||+|..+..+++.. +++|+++|+++.+++.++++....++.++++++++|+.+. +. .+++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~------~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PF------EDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CC------CCCCc
Confidence 356799999999999999999875 5799999999999999999999888878899999998764 21 25799
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|+|++... ..+...+++.+.+.|||||.+++.+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99997543 234567899999999999999986543
No 52
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.52 E-value=3.1e-13 Score=108.36 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGY--SLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~--st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
.|...+|+..++...+++.++|++|..|. +|+.|+.+.. .+++++||-.+++-....++.+...++.+.++|+.|+.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 46789999999999999999999877554 4666665532 47899999999998888999999999888889999986
Q ss_pred h-hhhHHHHhhhcCCCceeEEEEcCCccchH-HHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhhchHHHHHHH
Q 025824 141 L-PVLDLLIQDEKNHGSFDFIFVDADKDNYL-NYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLE 218 (247)
Q Consensus 141 ~-~~l~~l~~~~~~~~~fD~v~id~~~~~~~-~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 218 (247)
. +.++.+ ...||+++|+..+++. ..|+.+ ++=+.|.++|+.|.+..+. . . -.
T Consensus 106 ~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~-----~-~------------~~ 159 (218)
T PF07279_consen 106 PEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST-----N-G------------FS 159 (218)
T ss_pred HHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc-----C-C------------cc
Confidence 4 466654 6899999999987777 666654 4445688888899865321 0 0 12
Q ss_pred HHHHHHcCCCeeEEeeecCCeeEEEE
Q 025824 219 LNKALAADPRIEICMLPVGDGVTICR 244 (247)
Q Consensus 219 ~~~~i~~~~~~~~~~lp~~dG~~i~~ 244 (247)
+...+...+.+.+++||+|.||.|++
T Consensus 160 w~~~~~~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 160 WRSVLRGRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred HHHhcCCCCceeEEEeccCCCeEEEE
Confidence 23344566778999999999999987
No 53
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=3.9e-13 Score=112.87 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=86.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVYTGYSLLATALAL-PDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+..+|||+|||+|..+..+++.+ .++++++++|+++++++.|++++...+...+++++++|+.+.. .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 356799999999999999988854 3478999999999999999999998888778999999986542 245
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 157 FDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 157 fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+|+|++... .......++.+.+.|+|||.+++.+.+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 898886532 223467899999999999999987644
No 54
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=122.31 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=88.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC-CcEEEEEecchhhhHHHHhhhcCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
...+.++|||+|||+|..++..+. +...+|+++|+++.+++.|++|+..+++. ++++++++|+.+.+..+... .
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G 291 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence 345678999999999999887654 22469999999999999999999999986 58999999999888765321 3
Q ss_pred CceeEEEEcCCc------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDADK------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~~------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
++||+||+|.+. ..|..++..+.++|+|||+++.-
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 589999999872 24566677788999999999853
No 55
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=2.8e-13 Score=115.96 Aligned_cols=116 Identities=16% Similarity=0.295 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 65 ADEGQFLNMLLKL---VNA-KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 65 ~~~~~~l~~l~~~---~~~-~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
+++..++...... .++ .+|||+|||+|..++.++...+ +.+|+++|+++++++.|++|+...++.++++++++|.
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 4566666654432 223 6899999999999999999876 7899999999999999999999998877799999998
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDADK----------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~~----------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+.++ ..+||+|+.+.+. ..+..++..+.+.|+|||++++.
T Consensus 175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 76432 3489999987531 02445677777899999999875
No 56
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.51 E-value=5e-13 Score=111.64 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=86.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+..+|||+|||+|..+..+++.++ ++++++++|+++++++.|++++...+...+++++++|+.+.. .+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence 557899999999999999998753 478999999999999999999988776668999999987542 2458
Q ss_pred eEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 158 DFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 158 D~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
|+|++... ......+++.+.+.|+|||.+++.+.+.
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 88876543 2234678999999999999999987643
No 57
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=2e-13 Score=116.13 Aligned_cols=112 Identities=20% Similarity=0.348 Sum_probs=91.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
...+..+|||+|||+|..++.++....+.++|+++|+++++++.|++++...++ ++++++.+|+.+. + + .++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~-----~~~ 145 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-V-----ADN 145 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-C-----CCC
Confidence 445678999999999999988888766578999999999999999999998887 4799999998543 2 1 246
Q ss_pred ceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 156 SFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 156 ~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
+||+|+.... ..+....++.+.+.|+|||.+++.++...+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 8999997754 234578899999999999999998776443
No 58
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=4.3e-13 Score=116.18 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+|||||||+|..+..+++. +++|++||+++++++.|+++....+...+++++++++.+. +. ..++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~------~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-AD------EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hh------ccCCCC
Confidence 3468999999999999988863 6799999999999999998877665556899999998654 22 157899
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+|++... ..+...+++.+.++|||||.+++...
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9997543 24567899999999999999998754
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=1.5e-13 Score=113.48 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=87.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
++|||||||+|..+..+++..+ +++++++|+++++++.+++++...|+.++++++.+|..+... .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--------CCCCCEe
Confidence 4799999999999999998875 689999999999999999999999998899999999854411 3589999
Q ss_pred EEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 161 FVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 161 ~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.... ..+...+++.+.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 86432 245678999999999999999997764
No 60
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=2.3e-13 Score=110.39 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=81.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..++.+|||+|||+|..+.+|++. +.+|+++|+++++++.+++++...++ .++++..+|..+.. + .++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~--~------~~~ 95 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT--F------DGE 95 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC--c------CCC
Confidence 446789999999999999999974 57999999999999999999998887 45888888876531 1 357
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
||+|++... ......+++.+.++|+|||++++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999987543 23456889999999999999554
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.48 E-value=1.2e-12 Score=106.12 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=86.3
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 68 GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 68 ~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
..++..+....+..+|||+|||+|..++.++... ..+|+++|.+++.++.+++|++..++ .+++++++|+.+.++..
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP 118 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc
Confidence 4455555444566799999999999999655432 36999999999999999999999987 47999999998766432
Q ss_pred HhhhcCCCceeEEEEcCC-ccc-hHHHHHHHHh--cCCCCeEEEEe
Q 025824 148 IQDEKNHGSFDFIFVDAD-KDN-YLNYHKRLIE--LVKVGGVIGYD 189 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~-~~~-~~~~l~~~~~--~L~~gG~lv~d 189 (247)
..+||+||+|.+ ... ....++.+.+ +|+|++++++.
T Consensus 119 ------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 119 ------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred ------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 357999999998 333 3445555544 48999999875
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=5e-13 Score=108.27 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=80.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
.+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.+++.....++. +++...|.... + +
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~------ 91 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L------ 91 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c------
Confidence 334456789999999999999999974 579999999999999999998887763 77777776432 1 1
Q ss_pred CCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|+.... ......+++.+.+.|+|||++++-
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 357999986533 234568899999999999985543
No 63
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.48 E-value=3.4e-13 Score=109.93 Aligned_cols=119 Identities=16% Similarity=0.234 Sum_probs=94.7
Q ss_pred ccCHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe
Q 025824 62 TTSADEGQFLNMLLKL---VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 62 ~~~~~~~~~l~~l~~~---~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
.+.|....++...+.. ....+|||+|||.|..+.+||+. +..|+++|++++.++.|+......|+ .+++.+.
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~ 113 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQA 113 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhh
Confidence 3445555566666554 57789999999999999999986 68999999999999999999999887 3778777
Q ss_pred cchhhhHHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 139 PALPVLDLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 139 d~~~~l~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
.+.+.... .++||+|++--. ..+...++..|.+++||||.+++..+-
T Consensus 114 ~~edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 114 TVEDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hHHHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 77655331 479999987544 345567899999999999999987653
No 64
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=5.9e-13 Score=115.27 Aligned_cols=104 Identities=20% Similarity=0.330 Sum_probs=84.9
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
+...+..+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..|. ++++++++|+.+.++. .
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~ 147 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------F 147 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------c
Confidence 3445668999999999999999999876557899999999999999999999887 5799999998765442 3
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
++||+|+++....+. ...+.+.|+|||.+++.
T Consensus 148 ~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 679999998764433 34567899999998873
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=4.6e-13 Score=118.11 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC--CcEEEEEecchhhhHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDL 146 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gd~~~~l~~ 146 (247)
+++...+......+|||+|||+|..++.+++..| +.+|+++|+++.+++.|++|++.++.. .+++++.+|+.+.++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~- 295 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE- 295 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC-
Confidence 3333333333346999999999999999999876 789999999999999999999877643 378999998865432
Q ss_pred HHhhhcCCCceeEEEEcCCc--------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 147 LIQDEKNHGSFDFIFVDADK--------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~~--------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+||+|+++.+. ....++|..+.+.|+|||.+++.
T Consensus 296 -------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 -------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred -------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3589999998662 12356788888999999999875
No 66
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.47 E-value=2.7e-12 Score=109.14 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=86.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C-CCcEEEEEecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
..++++||+||||+|..+..+++..+ ..+++++|++++.++.+++++...+ . ..+++++.+|+.+.+...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 35678999999999999988887643 5799999999999999999986543 1 257899999998877653
Q ss_pred CCceeEEEEcCCcc-----c--hHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDADKD-----N--YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~-----~--~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 57999999987511 1 357889999999999999975
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=5.3e-13 Score=112.63 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=82.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
...++.+|||||||+|..+..+++..+ +++|+++|+++.+++.|++++ .+++++.+|+.+..+ .+
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~ 92 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ 92 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC
Confidence 335678999999999999999998876 789999999999999998764 357899999865432 46
Q ss_pred ceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8999998765 235678899999999999999884
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=2.8e-13 Score=98.05 Aligned_cols=93 Identities=23% Similarity=0.390 Sum_probs=74.2
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 83 TMEIGVYTGYSLLATALALPD--DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
|||+|||+|..+..++..++. ..+++++|+++++++.++++....+. +++++++|+.+. +.. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999988666 799999999764 432 6799999
Q ss_pred EEcCC------ccchHHHHHHHHhcCCCCe
Q 025824 161 FVDAD------KDNYLNYHKRLIELVKVGG 184 (247)
Q Consensus 161 ~id~~------~~~~~~~l~~~~~~L~~gG 184 (247)
++-.. ......+++.+.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 98322 3456788999999999998
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=1e-12 Score=104.92 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 68 GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 68 ~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
..+|...+...++.+|||+|||+|..+..++... .+++++|+++++++.+++++...+. +++++.+|..+..
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--- 79 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---
Confidence 3555555666677899999999999999998753 3899999999999999999988775 5888999986542
Q ss_pred HhhhcCCCceeEEEEcCCcc------------------------chHHHHHHHHhcCCCCeEEEEe
Q 025824 148 IQDEKNHGSFDFIFVDADKD------------------------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~~------------------------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|+.+.+.. -+..+++.+.++|+|||.+++-
T Consensus 80 ------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 80 ------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred ------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 35899999875421 0345788888999999998874
No 70
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.46 E-value=1.5e-13 Score=97.44 Aligned_cols=92 Identities=23% Similarity=0.346 Sum_probs=74.3
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEc
Q 025824 84 MEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVD 163 (247)
Q Consensus 84 LEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id 163 (247)
||+|||+|..+..+++. +..+++++|+++++++.+++..... ++.++++|+.+. +- .+++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~------~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PF------PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-cc------ccccccccccc
Confidence 89999999999999988 3789999999999999999987654 456999998765 32 26899999976
Q ss_pred CC---ccchHHHHHHHHhcCCCCeEEEE
Q 025824 164 AD---KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 164 ~~---~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.. ..+...+++++.+.|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 54 25678899999999999999985
No 71
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=4.7e-13 Score=112.88 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=79.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..++.+|||+|||+|..+..++...| +++|+++|+++.+++.|++. +++++++|+.+..+ .++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~ 89 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPD 89 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCC
Confidence 34678999999999999999998876 78999999999999988652 47889999865422 468
Q ss_pred eeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 157 FDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 157 fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
||+|++... ..+....+..+.+.|+|||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999998754 235577899999999999999984
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=1.9e-12 Score=111.03 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=85.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+.++|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++..++.+..++.... ..++|
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~f 226 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKA 226 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCc
Confidence 35689999999999999887753 3 4699999999999999999999988877788877763221 14689
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|+|+.+........++..+.+.|+|||.+++..++
T Consensus 227 DlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 227 DVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred eEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99999877666778889999999999999986653
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.45 E-value=2.1e-12 Score=108.26 Aligned_cols=115 Identities=22% Similarity=0.328 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 65 ADEGQFLNMLLKLV--NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 65 ~~~~~~l~~l~~~~--~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+....++..+.... ++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++. +++++++|+.+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 45555665555443 345899999999999999998876 689999999999999999999988874 69999999876
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCcc-----------------------------chHHHHHHHHhcCCCCeEEEEe
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKD-----------------------------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~-----------------------------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++ .++||+|+++.+.. .+..+++.+.+.|+|||.+++.
T Consensus 149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 432 47899999875411 0235677888999999999975
No 74
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=1.3e-12 Score=119.95 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=83.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|++|+...++.++++++.+|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 789999999999999999999999887889999999865432 358999
Q ss_pred EEEcCCc-----------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 160 IFVDADK-----------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 160 v~id~~~-----------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
|+.+.+. ..|..+++.+.++|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9986541 11234556667899999999975
No 75
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=1.3e-12 Score=107.89 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=85.8
Q ss_pred HHHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 66 DEGQFLNML--LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 66 ~~~~~l~~l--~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
....++..+ +...+..+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++++.. .++.++.+|+.+.
T Consensus 57 ~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~ 132 (226)
T PRK04266 57 LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKP 132 (226)
T ss_pred hHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCc
Confidence 334444434 4445677999999999999999999886 789999999999998877776543 4688999998642
Q ss_pred h--HHHHhhhcCCCceeEEEEcCCcc-chHHHHHHHHhcCCCCeEEEEe
Q 025824 144 L--DLLIQDEKNHGSFDFIFVDADKD-NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 144 l--~~l~~~~~~~~~fD~v~id~~~~-~~~~~l~~~~~~L~~gG~lv~d 189 (247)
. ..+ .++||+||+|.... .....++.+.+.|||||.+++.
T Consensus 133 ~~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 133 ERYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred chhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 112 35699999887532 2234578899999999999985
No 76
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=124.53 Aligned_cols=110 Identities=19% Similarity=0.317 Sum_probs=91.4
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC-CcEEEEEecchhhhHHHHhhhc
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
+....++++|||+|||+|..+++++.. + ..+|+++|+++.+++.|++|++.+|+. ++++++++|+.+.+..+
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 344456789999999999999999975 2 347999999999999999999999986 68999999998877654
Q ss_pred CCCceeEEEEcCCc--------------cchHHHHHHHHhcCCCCeEEEEecc
Q 025824 153 NHGSFDFIFVDADK--------------DNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 153 ~~~~fD~v~id~~~--------------~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
.++||+|++|.+. ..|..++..+.++|+|||++++...
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4689999999862 1356677888899999999987643
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.43 E-value=1.9e-12 Score=112.04 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=89.6
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
....+..+|||||||+|..++.+++..| +.+++++|. |..++.+++++...|+.++++++.+|+.+.. .
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---------~ 213 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---------Y 213 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC---------C
Confidence 3345668999999999999999999987 789999998 7899999999999999889999999987531 1
Q ss_pred CceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 155 GSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 155 ~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
+.+|+|++... .......++.+.+.|+|||.+++.+..+.
T Consensus 214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 34698876542 23335689999999999999999887654
No 78
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=2.8e-12 Score=106.29 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=93.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhh
Q 025824 71 LNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 71 l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~ 150 (247)
+...+...++.+|||+|||+|..+..++..+++.++++++|+++..++.++++... ...++++..+|+.+. + +
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~--- 83 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-F--- 83 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-C---
Confidence 33444556678999999999999999998875578999999999999999987332 335789999987643 1 1
Q ss_pred hcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccccccCC
Q 025824 151 EKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAP 200 (247)
Q Consensus 151 ~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~ 200 (247)
..++||+|++... ..+....++.+.+.|+|||.+++....|.+....+
T Consensus 84 --~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 134 (241)
T PRK08317 84 --PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHS 134 (241)
T ss_pred --CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecC
Confidence 1478999998654 24567889999999999999998876665444333
No 79
>PLN02823 spermine synthase
Probab=99.43 E-value=5e-12 Score=110.05 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=86.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C-CCcEEEEEecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
..+|++||.||+|.|.++.++++..+ ..+|+.+|++++.++.|++++...+ + .++++++.+|+.+++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 34688999999999999998887543 5799999999999999999986432 2 368999999999988643
Q ss_pred CCceeEEEEcCCcc---------chHHHHH-HHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDADKD---------NYLNYHK-RLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~---------~~~~~l~-~~~~~L~~gG~lv~d 189 (247)
.++||+||+|.... -..++++ .+.+.|+|||++++.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996421 1346787 899999999999863
No 80
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=113.58 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=95.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCC-CcEEEEEecchhhhHHHHhhh
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gd~~~~l~~l~~~~ 151 (247)
+....+.++||++-|+||..++..|.. ++ +||+||.+...++.|++|++-+|+. .++.++++|+.+++.....+
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~- 287 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR- 287 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence 344456889999999999999998865 44 9999999999999999999999985 57899999999999988653
Q ss_pred cCCCceeEEEEcCC------------ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 152 KNHGSFDFIFVDAD------------KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 152 ~~~~~fD~v~id~~------------~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
..+||+|++|++ ..+|......+.++|+|||++++-+..
T Consensus 288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 369999999987 245677788888999999999986554
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.42 E-value=4.5e-12 Score=101.57 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCc-EEEEEecchhhhHHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHK-IDFREGPALPVLDLL 147 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~-i~~~~gd~~~~l~~l 147 (247)
.++...+...+.++|||+|||+|..+..++.. +.+++++|+++++++.+++++...++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33444444467789999999999999999876 57999999999999999999998887544 8899998866432
Q ss_pred HhhhcCCCceeEEEEcCCcc------------------------chHHHHHHHHhcCCCCeEEEE
Q 025824 148 IQDEKNHGSFDFIFVDADKD------------------------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~~------------------------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..+||+|+.+.+.. ....+++.+.+.|+|||.+++
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34899999875411 134578888899999998875
No 82
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.42 E-value=6e-13 Score=106.34 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=86.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 73 MLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 73 ~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
..+....+.+|+|+|||+|.+|..|++..| ++.|++||.|++|++.|++.+ .+++|..+|+.+.-+
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p------- 89 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP------- 89 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-------
Confidence 344556788999999999999999999998 899999999999999997654 358899999977643
Q ss_pred CCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 153 NHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 153 ~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+.|++|.++. ..+....|..+...|.|||+|.+.
T Consensus 90 -~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 90 -EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 568999998875 455678899999999999999963
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.41 E-value=2.3e-11 Score=102.33 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 66 DEGQFLNMLLKL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 66 ~~~~~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
.....+..+... .+..+|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++.+++.+..+
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------ 176 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------ 176 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC------
Confidence 334444444433 46789999999999999877654 3 34799999999999999999998887544443322
Q ss_pred HHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.+||+|+.+........+++.+.+.|+|||.+++....
T Consensus 177 ---------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 177 ---------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ---------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 126999998876666778889999999999999986543
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=3.8e-12 Score=112.01 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=87.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.....+||||||+|..++.+|...| +..++|+|+++.+++.|.+.+...++. ++.++++|+.+.+..+ .++++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~ 193 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSV 193 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCce
Confidence 3456899999999999999999986 789999999999999999999998884 6999999997665444 26799
Q ss_pred eEEEEcCCcc---------chHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKD---------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~---------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|.|++..+.. ....+++.+.+.|+|||.+.+
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9999865311 125789999999999999886
No 85
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=2.4e-12 Score=109.04 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=84.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 76 KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
...+..+|||||||+|..+..++... +++|+++|+++.+++.|+++... .++++++.+|+.+. + + ..+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~-----~~~ 116 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F-----PEN 116 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C-----CCC
Confidence 44566899999999999999998753 57999999999999999987654 35799999998643 1 1 257
Q ss_pred ceeEEEEcC-C----ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 156 SFDFIFVDA-D----KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 156 ~fD~v~id~-~----~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
+||+|++.. . ..+....++.+.++|+|||.+++.+...
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 899999732 1 2356789999999999999999977644
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.41 E-value=5e-12 Score=106.27 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 65 ADEGQFLNMLLKLV----NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 65 ~~~~~~l~~l~~~~----~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
+.+..++....... .+.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|+...+ ++++++|.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 44455555444322 235899999999999999998876 6799999999999999999998765 47889998
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCCccc-----------------------------hHHHHHHHHhcCCCCeEEEEe
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDADKDN-----------------------------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~~~~-----------------------------~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+.++... .++||+|+.|.+... +..+++.+.++|+|||.+++.
T Consensus 143 ~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 76554321 357999999875210 235556666899999999975
No 87
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=1.1e-11 Score=99.79 Aligned_cols=116 Identities=10% Similarity=0.038 Sum_probs=89.4
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
++..+.......+|||++||+|..++.+++.- ..+|+++|.++..++.+++|++..++.++++++.+|+.+.+..+..
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 33333333467899999999999999988763 2489999999999999999999999877899999999877665421
Q ss_pred hhcCCCceeEEEEcCCc--cchHHHHHHHH--hcCCCCeEEEEec
Q 025824 150 DEKNHGSFDFIFVDADK--DNYLNYHKRLI--ELVKVGGVIGYDN 190 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~~--~~~~~~l~~~~--~~L~~gG~lv~d~ 190 (247)
. ...||+||+|.+. ..+...++.+. .+|+++|++++..
T Consensus 118 ~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 118 K---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred c---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 2358999999983 33455566554 4799999999853
No 88
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=3.1e-12 Score=109.75 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=81.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...++ ++++...|..+.. + .++
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~~ 184 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QEE 184 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cCC
Confidence 356779999999999999999874 57999999999999999999998887 5888888875431 1 468
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
||+|+.... ......+++.+.+.|+|||++++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987643 24567889999999999999654
No 89
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.40 E-value=7.5e-12 Score=113.36 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=100.7
Q ss_pred ccCHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec
Q 025824 62 TTSADEGQFLNMLL--KLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 62 ~~~~~~~~~l~~l~--~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
.++...+.+...++ ...++.+|||+++|.|.-|..+++.+...+.|++.|+++..++..++++++.|+. ++.+...|
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D 172 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFD 172 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCc
Confidence 34455555555555 4467789999999999999999999987799999999999999999999999984 58888888
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCccch-------------------------HHHHHHHHhcCCCCeEEEEeccccc
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADKDNY-------------------------LNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~~~~-------------------------~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
+......+ .+.||.|++|++++.. .++++.+.++|||||+|| |+
T Consensus 173 ~~~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-----YS 241 (470)
T PRK11933 173 GRVFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-----YS 241 (470)
T ss_pred hhhhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-----EE
Confidence 86543332 4679999999874311 356677778999999998 45
Q ss_pred ccccCCCCC
Q 025824 195 GSVVAPPDA 203 (247)
Q Consensus 195 g~~~~~~~~ 203 (247)
.+...+.++
T Consensus 242 TCT~~~eEN 250 (470)
T PRK11933 242 TCTLNREEN 250 (470)
T ss_pred CCCCCHHHH
Confidence 555556543
No 90
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=4.1e-12 Score=110.48 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=82.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..+++|||||||+|+.+..++...+ .+|+++|+++.++..++..-...+...+++++.+++.+. +. .++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence 4568999999999999999988643 479999999988865544333333345799999988644 21 3689
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
|+||+-+. ..+....++.+.+.|+|||.++++.....+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 99998654 245678899999999999999998655443
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.5e-12 Score=108.02 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=89.9
Q ss_pred cCHHHHHHHHHHH-hh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 63 TSADEGQFLNMLL-KL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 63 ~~~~~~~~l~~l~-~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
..+++..++..+. .. ....+|||+|||+|..++.++...+ ..+|+++|+|++.++.|++|+..+|+ .++.++.+|.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dl 169 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDL 169 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeec
Confidence 3467777777643 11 1222799999999999999999987 78999999999999999999999998 6677777776
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCC---cc-------------------------chHHHHHHHHhcCCCCeEEEEe
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDAD---KD-------------------------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~---~~-------------------------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+-+ .++||+|+.+.+ .+ -+..++..+...|+|||++++.
T Consensus 170 f~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 170 FEPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred cccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 6543 359999998765 11 1234556667899999999975
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=6e-12 Score=107.06 Aligned_cols=115 Identities=23% Similarity=0.371 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 65 ADEGQFLNMLLK---LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 65 ~~~~~~l~~l~~---~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
+++..++..+.. ..++.+|||+|||+|..++.++...+ ..+++++|+++.+++.|++++. .+...+++++.+|..
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 455556665542 34567999999999999999999886 7899999999999999999998 344467999999986
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCCc-----------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDADK-----------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~~-----------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.++ .++||+|+.+.+. ..+..+++.+.++|+|||.+++.
T Consensus 169 ~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 169 EPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5432 3689999987541 11345667777999999999983
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.4e-12 Score=108.26 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=83.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++++|||+|||+|..++..++. + ..+++++|++|..++.|++|++.+++...++....+..+... .++|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--------~~~~ 230 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--------NGPF 230 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--------cCcc
Confidence 37889999999999999987764 3 468999999999999999999999986534444444433322 4699
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|+|+.+.-.+-.......+.++++|||.+++..++
T Consensus 231 DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 231 DVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 99998876556677888889999999999987655
No 94
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=6.9e-12 Score=104.13 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=88.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+...+++++.+|+.+... ..++|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~ 122 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNSF 122 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCCc
Confidence 35679999999999999999988765689999999999999999999876666779999999876421 24689
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
|+|++... .......++.+.+.|+|||.+++-+.
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 99987643 34567889999999999999987544
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.38 E-value=6e-12 Score=111.49 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++..+. +++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence 45667777766543 3456899999999999999998766 78999999999999999999998774 79999999865
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--c--------------------------chHHHHHHHHhcCCCCeEEEE
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--D--------------------------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~--------------------------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.... ..++||+|+++.+. . .+..+++.+.+.|+|||.+++
T Consensus 312 ~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 312 TDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3211 13579999998752 0 123455555689999999886
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=1e-11 Score=102.72 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=79.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...++ +++++.+|+.+.++ .++|
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f 102 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF 102 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence 34579999999999999998874 3 35999999999999999999998776 58889998865432 4689
Q ss_pred eEEEEcCCcc------------------------chHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKD------------------------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~------------------------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|+++.+.. .+..+++.+.++|+|||.+++
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999985411 024466778899999999986
No 97
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=1.4e-11 Score=112.91 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 68 GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 68 ~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
..++..+ ...++.+|||||||+|..+..+++.. +++|+++|+++++++.|+++.. +...++++.++|+.+.. +
T Consensus 256 e~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~ 328 (475)
T PLN02336 256 KEFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y 328 (475)
T ss_pred HHHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C
Confidence 3344433 34456799999999999999998865 5799999999999999998775 44457999999986532 1
Q ss_pred HhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 148 IQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
..++||+|++... ..+....++.+.+.|+|||.+++.+...
T Consensus 329 -----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 -----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred -----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 1468999998644 2456789999999999999999886543
No 98
>PRK06922 hypothetical protein; Provisional
Probab=99.37 E-value=7.4e-12 Score=115.77 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=88.0
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhh
Q 025824 72 NMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 72 ~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~ 151 (247)
..+....++.+|||+|||+|..+..+++..| +++++++|+++.+++.|+++....+ .+++++++|+.+....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f---- 483 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF---- 483 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence 3344555778999999999999999998876 8999999999999999998876554 36888999987632112
Q ss_pred cCCCceeEEEEcCC----------------ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 152 KNHGSFDFIFVDAD----------------KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 152 ~~~~~fD~v~id~~----------------~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
.+++||+|+.... ......+++.+.+.|||||.+++.+..
T Consensus 484 -edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 484 -EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred -CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 2578999986532 124467889999999999999986543
No 99
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.37 E-value=7.5e-12 Score=100.18 Aligned_cols=124 Identities=21% Similarity=0.259 Sum_probs=93.7
Q ss_pred ccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 62 TTSADEGQFLNMLLKL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 62 ~~~~~~~~~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
+.....+.++..+-.. ....++||+-||+|..++..++.- ..+|+.||.+++.+...++|++..+..++++++.+|+
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 3445556666666666 788999999999999999876642 3699999999999999999999999988899999999
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCCc--cc-hHHHHHHHH--hcCCCCeEEEEec
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDADK--DN-YLNYHKRLI--ELVKVGGVIGYDN 190 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~~--~~-~~~~l~~~~--~~L~~gG~lv~d~ 190 (247)
...+..+... ..+||+||+|++. .. +...++.+. .+|+++|+|++.-
T Consensus 102 ~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 102 FKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 8888766332 5799999999983 23 366777776 7999999999853
No 100
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=8.5e-12 Score=99.95 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+....++. .+...++.++||+|||.|..+++||+. +..|+++|.++..++.+++..+..+++ |+..+.|..+.-
T Consensus 17 ~~hs~v~~-a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 17 PTHSEVLE-AVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD 90 (192)
T ss_dssp ---HHHHH-HCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS
T ss_pred CCcHHHHH-HHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc
Confidence 33444444 356678899999999999999999986 789999999999999999988888873 899999986642
Q ss_pred HHHHhhhcCCCceeEEEEcC-----CccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 145 DLLIQDEKNHGSFDFIFVDA-----DKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~-----~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
. .+.||+|+... ..+..+..++.+...++|||++++...
T Consensus 91 ~--------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 F--------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred c--------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 2 46899998642 255667889999999999999887443
No 101
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.36 E-value=3.1e-13 Score=97.34 Aligned_cols=96 Identities=23% Similarity=0.312 Sum_probs=62.6
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEc
Q 025824 84 MEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVD 163 (247)
Q Consensus 84 LEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id 163 (247)
||||||+|..+..++...+ ..+++++|+|+.+++.+++.+...+.. +......+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999985 899999999999999999988887643 3344444433332211 12599999976
Q ss_pred CC---ccchHHHHHHHHhcCCCCeEE
Q 025824 164 AD---KDNYLNYHKRLIELVKVGGVI 186 (247)
Q Consensus 164 ~~---~~~~~~~l~~~~~~L~~gG~l 186 (247)
.. .......++.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 54 356678899999999999986
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1e-11 Score=108.70 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=81.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
....+|||+|||+|..+..+++..| ..+|+++|+++.+++.|+++++..++. .+++.+|..+.+ .++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~---------~~~f 262 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI---------KGRF 262 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc---------CCCc
Confidence 3456899999999999999998876 689999999999999999999998874 567777765421 4689
Q ss_pred eEEEEcCCc--------cchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADK--------DNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~--------~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|+++.+- .....++..+.+.|+|||.+++
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 999997652 2346788888999999999875
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.35 E-value=1.2e-11 Score=108.15 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
.+..+..+..++...+..+|||+|||+|..++..+.. +.+++++|++++++..+++|++.+|+.+ +++.++|+.+.
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence 4555666666666666779999999999988876543 6799999999999999999999999865 89999999764
Q ss_pred hHHHHhhhcCCCceeEEEEcCCc------------cchHHHHHHHHhcCCCCeEEEE
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADK------------DNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~------------~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+. ..++||+|++|.+. ..+..+++.+.+.|+|||.+++
T Consensus 243 -~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 243 -PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred -Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 22 14689999998652 1156788888999999999886
No 104
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.34 E-value=3.4e-11 Score=100.05 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+...+++.......+..+|||||||+|..+..+++. +.+++++|+++..++.+++++...+. +++++.++..+..
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 333445555554556789999999999999888864 46899999999999999999887665 5788888876554
Q ss_pred HHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEec
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
... .++||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 109 ~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 109 AEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 221 478999987543 2345678899999999999999864
No 105
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=1.7e-11 Score=99.96 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=78.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
+....++.+|||+|||+|..+..++..++ +.+++++|+++++++.|++++. ++++.++|+.+.. .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~--------~ 102 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPF--------K 102 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCC--------C
Confidence 33445677899999999999999988775 7899999999999999988642 4678888887622 2
Q ss_pred CCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 154 HGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 154 ~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
.++||+|++... .......++.+.+.+ ++++++.+..-+
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 579999998664 223456777777776 457777666443
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.33 E-value=8.3e-12 Score=104.96 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHH
Q 025824 67 EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDL 146 (247)
Q Consensus 67 ~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~ 146 (247)
.+..+...+...++.+|||+|||+|..+..++.. +.+++++|+++.+++.++++.. ...++++|+.+. +.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~~ 99 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-PL 99 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-cC
Confidence 3333333333345679999999999998888753 5799999999999999887642 246788888653 21
Q ss_pred HHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEec
Q 025824 147 LIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
.+++||+|+.... ..+....+..+.+.|+|||.+++..
T Consensus 100 ------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 100 ------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2568999997654 3456788999999999999999864
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.33 E-value=2.3e-11 Score=105.61 Aligned_cols=101 Identities=9% Similarity=0.046 Sum_probs=81.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++.+|||+|||+|..++.+++. +.+|+++|+++.+++.|+++++..++ ++++++++|+.+..... .++|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 35689999999999999999973 57999999999999999999999998 67999999998765432 3579
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|++|.+.......+......++|++++.+
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEE
Confidence 9999998865544444444455778887775
No 108
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.33 E-value=1.7e-11 Score=105.89 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=80.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+.++|||||||+|+.+..++... ..+|+++|+++.++..++..-+..+...++.+..++..+. +. ..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~F 189 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAF 189 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCc
Confidence 456899999999999998888653 2489999999998876544333233335788888877543 21 3589
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
|+||+.+. ..+....++.+.+.|+|||.+++......|
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99998754 345568899999999999999987655443
No 109
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=4.9e-12 Score=100.57 Aligned_cols=124 Identities=17% Similarity=0.294 Sum_probs=84.5
Q ss_pred HHhCCCCccccCHHHHHHHHHH---HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC
Q 025824 53 TAKHPWNIMTTSADEGQFLNML---LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV 129 (247)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~ 129 (247)
+...+|.+-+..-+..+.-..+ .....-.++||+|||.|..|..|+.. ..+++++|+++..++.|++.+...
T Consensus 14 a~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~-- 88 (201)
T PF05401_consen 14 ANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGL-- 88 (201)
T ss_dssp TSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC--
Confidence 3456676544334433332222 22233368999999999999999876 459999999999999999988653
Q ss_pred CCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC------ccchHHHHHHHHhcCCCCeEEEEec
Q 025824 130 AHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD------KDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 130 ~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~------~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
++|++++++..+..| .++||+|++... ......+++.+...|+|||.+|+-.
T Consensus 89 -~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 89 -PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 479999999977654 689999998753 2345567888889999999999844
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=1.9e-11 Score=101.39 Aligned_cols=101 Identities=22% Similarity=0.340 Sum_probs=81.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++.+. ++++++.+|+.+... ..++|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-------~~~~f 99 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-------EDSSF 99 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-------CCCce
Confidence 3457999999999999999998876 6789999999999988887654 368899999865421 15789
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 158 DFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 158 D~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
|+|++... ..+....++.+.++|+|||++++...
T Consensus 100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99998754 23567889999999999999998643
No 111
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.32 E-value=2e-11 Score=103.72 Aligned_cols=109 Identities=23% Similarity=0.373 Sum_probs=84.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC-CcEEEEEecchhhhHHHHhhhc
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
+....+.++||++-|++|..++..+..- ..+|++||.+...++.+++|+.-+|+. ++++++.+|+.+.+..+..
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--- 192 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--- 192 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---
T ss_pred HHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---
Confidence 3344567899999999999999876541 358999999999999999999999986 6899999999998877542
Q ss_pred CCCceeEEEEcCC---------ccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDAD---------KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~---------~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.++||+|++|.+ ...|...+..+.++|+|||+|++
T Consensus 193 -~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 193 -GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp -TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 469999999987 24567788888899999999875
No 112
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.32 E-value=2e-11 Score=103.42 Aligned_cols=169 Identities=21% Similarity=0.225 Sum_probs=105.0
Q ss_pred ccccccccccccccccCCcHHHHHHHHHhcCCCCCcHHHHHHHH-HHHhCCCCccccCHHHHHHHHH-----HHhh---c
Q 025824 8 QQNQQGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRE-LTAKHPWNIMTTSADEGQFLNM-----LLKL---V 78 (247)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~-----l~~~---~ 78 (247)
....+.+...|....+..-+++..++... ...+.+..+.. .+......+- .+..-..+.. +... .
T Consensus 25 ~~l~~rl~~r~~~~~~~~~~~y~~~l~~~----~~~~e~~~l~~~lti~~T~FfR--~~~~~~~l~~~vlp~l~~~~~~~ 98 (264)
T smart00138 25 TLLQSRLSRRLRVLGLKDFSEYLELLTSH----RGEEELAELLDLMTTNETRFFR--ESKHFEALEEKVLPLLIASRRHG 98 (264)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHhcC----CcHHHHHHHHHHhhcCCCcccC--CcHHHHHHHHHHhHHHHHhcCCC
Confidence 34455556666666677666666666531 22344555433 3433333222 1333333322 2222 2
Q ss_pred CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHH----cC------------------
Q 025824 79 NAKNTMEIGVYTGYS----LLATALALPD----DGKILAMDINRENYELGLPVIQK----AG------------------ 128 (247)
Q Consensus 79 ~~~~vLEiG~g~G~s----t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~----~g------------------ 128 (247)
++.+|+++|||+|.- ++.+++..+. +.+|+++|+++++++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 356899999999974 4445555442 57999999999999999875310 01
Q ss_pred ----CCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 129 ----VAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 129 ----~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.++|+|.++|..+..+ ..++||+|++... .......++.+.+.|+|||++++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 12468999999876432 1478999998533 234457889999999999999974
No 113
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=1.3e-11 Score=105.50 Aligned_cols=115 Identities=23% Similarity=0.315 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
+.+...|..+-.. .+.++|||+|||+|-.++..++. + ..+|+++|++|..++.|++|+..+++.+++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 3444455555554 34679999999999999987764 3 468999999999999999999999998877663 22222
Q ss_pred hHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
...+||+|+.+.-..-.......+.++|+|||++++..++
T Consensus 222 ---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 222 ---------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 1479999998887666677778888999999999987665
No 114
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.31 E-value=4e-11 Score=102.07 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=73.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDD--GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
+..+|||+|||+|+.+..++..++.. .+++++|+++.+++.|++.. .++++.++|+.+. +- .+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~------~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PF------ADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CC------cCCc
Confidence 44689999999999999999877632 48999999999999987642 3578899998653 21 2578
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
||+|+..... ..++++.+.|+|||.+++-
T Consensus 152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 152 LDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 9999864432 3357788999999999963
No 115
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=3e-11 Score=99.21 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=85.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..++.+|||+|||+|..+..+++..+..++++++|+++..++.+++++. ...+++++.+|+.+... ..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-------~~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-------EDNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-------CCCc
Confidence 3467899999999999999999988744799999999999999998876 33578999999876431 1468
Q ss_pred eeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 157 FDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 157 fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
||+|++... .......++.+.+.|+|||.+++.+.
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999987543 34567888999999999999997554
No 116
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.6e-11 Score=102.49 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
++..+-. ....+|||+|||.|+.++.+++..| ..+++.+|+|...++.|++|+..++++.. .++..|..+...
T Consensus 150 Ll~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~---- 222 (300)
T COG2813 150 LLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVE---- 222 (300)
T ss_pred HHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccccc----
Confidence 3343333 3344999999999999999999987 89999999999999999999999888543 777888776543
Q ss_pred hhcCCCceeEEEEcCC----ccch----HHHHHHHHhcCCCCeEEEE
Q 025824 150 DEKNHGSFDFIFVDAD----KDNY----LNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~----~~~~----~~~l~~~~~~L~~gG~lv~ 188 (247)
++||+|+++.+ +.-. ++++....+.|++||-|-+
T Consensus 223 -----~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 223 -----GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred -----ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 48999999877 2222 3788888899999998765
No 117
>PRK03612 spermidine synthase; Provisional
Probab=99.30 E-value=1.1e-11 Score=114.28 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=84.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH--HHHc---CC-CCcEEEEEecchhhhHHHHhh
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPV--IQKA---GV-AHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---g~-~~~i~~~~gd~~~~l~~l~~~ 150 (247)
..++++||+||||+|..+..+++. ++..+++++|+|+++++.++++ +... .. .++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457899999999999999998874 4247999999999999999994 3322 12 258999999999877653
Q ss_pred hcCCCceeEEEEcCCccc--------hHHHHHHHHhcCCCCeEEEEe
Q 025824 151 EKNHGSFDFIFVDADKDN--------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~--------~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|++|..... ..++++.+.+.|+|||++++.
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 578999999975221 235889999999999999975
No 118
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.29 E-value=3.9e-11 Score=96.59 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=93.6
Q ss_pred CCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcE
Q 025824 57 PWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALA---LPDDGKILAMDINRENYELGLPVIQKAGVAHKI 133 (247)
Q Consensus 57 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i 133 (247)
|.|+.+ .|..-..+..++...+|..|+|+|+..|.|++++|+. +...++|++||++.... .++.++...+.++|
T Consensus 11 G~pi~q-~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 11 GRPIIQ-YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRI 87 (206)
T ss_dssp TEEESS--HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTE
T ss_pred Ceehhc-CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCce
Confidence 455444 3556666777888889999999999999999998754 44579999999976543 22334445566899
Q ss_pred EEEEecchhh--hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhh
Q 025824 134 DFREGPALPV--LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYV 209 (247)
Q Consensus 134 ~~~~gd~~~~--l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~ 209 (247)
++++||+.+. +...... .......+|+.|+. +.+....|+...+++++|+++|+.|+.+.......... +.|.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~--~~w~ 164 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD--RPWG 164 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------
T ss_pred EEEECCCCCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc--cchh
Confidence 9999998653 2221100 01245679999987 57788899999999999999999988754322221000 0011
Q ss_pred chHHHHHHHHHHHHHcCCCeeEE
Q 025824 210 RYYRDFVLELNKALAADPRIEIC 232 (247)
Q Consensus 210 ~~~~~~~~~~~~~i~~~~~~~~~ 232 (247)
.. ..-..+..+++.++++|+..
T Consensus 165 ~g-~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 165 PG-NNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp ------HHHHHHHHHTTTTEEEE
T ss_pred hh-hHHHHHHHHHHHHCCCcEec
Confidence 00 01234555667788886654
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=3.5e-11 Score=98.68 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=74.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC--------------CCcEEEEEecchhhh
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV--------------AHKIDFREGPALPVL 144 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--------------~~~i~~~~gd~~~~l 144 (247)
+..+||++|||.|..+++||+. +..|+++|+++..++.+.+ ++++ ..+++++++|..+.-
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999974 7899999999999987532 2222 246899999998753
Q ss_pred HHHHhhhcCCCceeEEEEc-----CCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 145 DLLIQDEKNHGSFDFIFVD-----ADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id-----~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
... .++||.|+-. .+......+++.+.++|+|||++++..
T Consensus 108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 321 3568877632 224455678999999999999766543
No 120
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.28 E-value=8.5e-11 Score=101.48 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
++.+|||+|||+|..+..|++++++..+++++|+|+++++.+++.+......-++..+++|..+.++.... . ..+...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~-~-~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE-P-AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc-c-ccCCeE
Confidence 45789999999999999999988656899999999999999999887643223577889998765432210 0 011334
Q ss_pred EEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 159 FIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 159 ~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+++.+.. ......+++.+.+.|+|||.++++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5555543 334557889999999999999874
No 121
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=5.4e-11 Score=98.33 Aligned_cols=121 Identities=17% Similarity=0.326 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE
Q 025824 63 TSADEGQFLNMLLKL------VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~------~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
.-|++.+++...+.. .++..+||+|||+|..++.++..+| .++++++|.++.++..|.+|.+++++.+++.++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 347888888877654 3455799999999999999999998 899999999999999999999999999999998
Q ss_pred E----ecchhhhHHHHhhhcCCCceeEEEEcCC---c--------------------------cchHHHHHHHHhcCCCC
Q 025824 137 E----GPALPVLDLLIQDEKNHGSFDFIFVDAD---K--------------------------DNYLNYHKRLIELVKVG 183 (247)
Q Consensus 137 ~----gd~~~~l~~l~~~~~~~~~fD~v~id~~---~--------------------------~~~~~~l~~~~~~L~~g 183 (247)
+ +|..+..+.+ .+++|+++.+.+ + ..+..++..+.++|+||
T Consensus 205 ~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 205 HNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred ecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 4 4444433322 579999987543 0 11234555566899999
Q ss_pred eEEEEec
Q 025824 184 GVIGYDN 190 (247)
Q Consensus 184 G~lv~d~ 190 (247)
|.+.+.-
T Consensus 279 g~~~le~ 285 (328)
T KOG2904|consen 279 GFEQLEL 285 (328)
T ss_pred CeEEEEe
Confidence 9999863
No 122
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=6.1e-11 Score=97.57 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC-------
Q 025824 57 PWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV------- 129 (247)
Q Consensus 57 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~------- 129 (247)
+|......+...+++..+ ...+..+||++|||.|..+++||+. +.+|+++|+++..++.+.+ +.++
T Consensus 16 ~~~~~~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~ 88 (218)
T PRK13255 16 GFHQEEVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQS 88 (218)
T ss_pred CCCCCCCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCcccccc
Confidence 343334445444444332 2234579999999999999999974 7899999999999887532 2222
Q ss_pred -------CCcEEEEEecchhhhHHHHhhhcCCCceeEEE-----EcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 130 -------AHKIDFREGPALPVLDLLIQDEKNHGSFDFIF-----VDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 130 -------~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~-----id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..+|++.++|+.+..+.. ...||+|+ +..+.+....++..+.++|+|||++++
T Consensus 89 ~~~~~~~~~~v~~~~~D~~~l~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 89 GEFEHYQAGEITIYCGDFFALTAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccccccccCceEEEECcccCCCccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 257899999998764321 35789887 223355667899999999999986443
No 123
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=4.8e-11 Score=106.14 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=80.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..+..+|||||||+|..+..+++.. +++|+++|+++++++.|++++. ++ .+++..+|..+. .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCC
Confidence 3456799999999999999998765 5799999999999999999874 33 478888876532 368
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 157 FDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 157 fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
||.|+.-.. ..++..+++.+.++|+|||.+++....
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 999975432 345678999999999999999987543
No 124
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.27 E-value=1.5e-10 Score=98.21 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=90.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C-CCcEEEEEecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
...+++||-||.|.|..+..+++..+ -.+++.+|+++..++.+++++.... . .+|++++.+|+.+++...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 34568999999999999999998865 6899999999999999999998643 2 379999999999998874
Q ss_pred CCceeEEEEcCCcc-c------hHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDADKD-N------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~-~------~~~~l~~~~~~L~~gG~lv~d 189 (247)
.++||+|++|.... . ...+++.|.+.|+++|+++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 45899999997632 2 378999999999999999975
No 125
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=96.14 Aligned_cols=129 Identities=26% Similarity=0.372 Sum_probs=98.7
Q ss_pred HhCCCCccccCHHHH-HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCc
Q 025824 54 AKHPWNIMTTSADEG-QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHK 132 (247)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~ 132 (247)
.+..++.+...+... .=+..+........+||||||.|.+.+.+|...| +..++|||+....+..|.+.+.+.++. +
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-N 99 (227)
T COG0220 22 LEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-N 99 (227)
T ss_pred HHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-c
Confidence 344555555444322 1122233333346899999999999999999988 789999999999999999999999985 8
Q ss_pred EEEEEecchhhhHHHHhhhcCCCceeEEEEc---CC--ccc------hHHHHHHHHhcCCCCeEEEE
Q 025824 133 IDFREGPALPVLDLLIQDEKNHGSFDFIFVD---AD--KDN------YLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 133 i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id---~~--~~~------~~~~l~~~~~~L~~gG~lv~ 188 (247)
+.++++|+.+.+..+.+ +++.|-|++. .+ +.+ .+.+++.+.+.|+|||.|.+
T Consensus 100 lri~~~DA~~~l~~~~~----~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 100 LRLLCGDAVEVLDYLIP----DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EEEEcCCHHHHHHhcCC----CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 99999999999988853 3478877764 44 122 46799999999999999986
No 126
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.26 E-value=4.4e-11 Score=104.15 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=79.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+|||||||+|..+..+++..+ +.+++++|+++++++.|+++... .+++++.+|+.+. +. ..++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~------~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF------PTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC------CCCcee
Confidence 456999999999999999988775 57999999999999999987642 3578899998653 21 146899
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+|++... ..+....++++.+.|+|||.+++-
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9987653 234567899999999999999764
No 127
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.1e-10 Score=100.98 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=101.7
Q ss_pred cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec
Q 025824 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
..++...+++...++...+..+|||.+++.|.=|.++++.+.. +..|+++|.++..++..++|+++.|+.+ +.++..|
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d 216 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKD 216 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecc
Confidence 3455666777777777778899999999999999999999875 3566999999999999999999999965 7888888
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCccch-------------------------HHHHHHHHhcCCCCeEEEEeccccc
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADKDNY-------------------------LNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~~~~-------------------------~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
+........ ..++||.|++|++++.. .++++.++++|||||+|+. +
T Consensus 217 ~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVY-----S 287 (355)
T COG0144 217 ARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY-----S 287 (355)
T ss_pred ccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-----E
Confidence 754332221 12369999999873221 3466777799999999994 5
Q ss_pred ccccCCCCC
Q 025824 195 GSVVAPPDA 203 (247)
Q Consensus 195 g~~~~~~~~ 203 (247)
.+...++++
T Consensus 288 TCS~~~eEN 296 (355)
T COG0144 288 TCSLTPEEN 296 (355)
T ss_pred ccCCchhcC
Confidence 555566654
No 128
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=1.5e-10 Score=102.75 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=89.8
Q ss_pred ccccCHHHHHHHHHHH-h---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 60 IMTTSADEGQFLNMLL-K---LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 60 ~~~~~~~~~~~l~~l~-~---~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
+.++.+...+-+...+ . ..+..+|||+|||+|..++.++.. +.+|+++|+++.+++.|++|++..++. ++++
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~ 285 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSF 285 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence 3455555555554322 2 235679999999999999999853 569999999999999999999999884 7999
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCCccch-HHHHHHHHhcCCCCeEEEEe
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADKDNY-LNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~-~~~l~~~~~~L~~gG~lv~d 189 (247)
+.+|+.+.+... .++||+|++|.+.... ...++.+. .++|++++++.
T Consensus 286 ~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 286 AALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred EECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 999998766432 3569999999985543 34445554 57899888863
No 129
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.25 E-value=1.2e-10 Score=96.37 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..+..+++. +.+++++|+++.+++.|++++...+..+++++..+|.. .. .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence 45679999999999999999875 45799999999999999999988887678999999842 21 4689
Q ss_pred eEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|++... .......++.+.+.+++++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99987533 22344566666666655555443
No 130
>PTZ00146 fibrillarin; Provisional
Probab=99.25 E-value=7.6e-11 Score=100.00 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=76.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|+.+..++..+.+.++|+++|+++++.+...+..+. ..+|.++.+|+..... +.. ..+.|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~-y~~---~~~~v 203 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQK-YRM---LVPMV 203 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhh-hhc---ccCCC
Confidence 4557999999999999999999987778999999998765443333322 1468889999864211 100 13579
Q ss_pred eEEEEcCCccch-HHHHHHHHhcCCCCeEEEEe
Q 025824 158 DFIFVDADKDNY-LNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 158 D~v~id~~~~~~-~~~l~~~~~~L~~gG~lv~d 189 (247)
|+||+|....+. ..++..+.+.|||||.+++.
T Consensus 204 DvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 999999864333 34455778899999999983
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=105.20 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=90.6
Q ss_pred cccCHHHHHHH-HHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE
Q 025824 61 MTTSADEGQFL-NMLLK---LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 61 ~~~~~~~~~~l-~~l~~---~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
.++++...+.+ ..+.. ..+..+|||+|||+|..++.++... .+|+++|+++++++.|++|++..++ ++++++
T Consensus 275 ~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~ 350 (443)
T PRK13168 275 IQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFY 350 (443)
T ss_pred EEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEE
Confidence 34555554433 33333 2345799999999999999999763 6999999999999999999998887 469999
Q ss_pred EecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 137 EGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 137 ~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+|+.+.+..+.- ..++||+|++|.+.......++.+.+ ++|++++++.
T Consensus 351 ~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 351 HANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred EeChHHhhhhhhh---hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 9999876543210 13579999999987666677765555 6888888764
No 132
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=4.1e-11 Score=95.26 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=78.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEE-EEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKID-FREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~-~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
...|||+|||+|..=...- - .+..+||++|+++.+-+.+.+-+.+... .+++ |+++++. .++++ .+.++|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge-~l~~l-----~d~s~D 147 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGE-NLPQL-----ADGSYD 147 (252)
T ss_pred ccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechh-cCccc-----ccCCee
Confidence 3457999999998733321 1 1589999999999999999998887643 4566 8899985 45655 278999
Q ss_pred EEEEc---CCccchHHHHHHHHhcCCCCeEEEE
Q 025824 159 FIFVD---ADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 159 ~v~id---~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.|+.. +..++..+.++++.++|+|||.+++
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 98654 4567888999999999999999986
No 133
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.24 E-value=1.1e-10 Score=95.59 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=73.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~ 155 (247)
.+..+|||+|||+|..+..+++..++.++|++||+++. .+. .+++++++|+.+. ++.+...- ..+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~-~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERV-GDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHh-CCC
Confidence 45679999999999999999998866789999999982 122 3589999998763 33322111 257
Q ss_pred ceeEEEEcCCcc-------c-------hHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDADKD-------N-------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~~~-------~-------~~~~l~~~~~~L~~gG~lv~d 189 (247)
+||+|+.|.... + ....++.+.++|+|||.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999876310 1 134678888999999999985
No 134
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.24 E-value=2.3e-10 Score=90.67 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=96.3
Q ss_pred cccCHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec
Q 025824 61 MTTSADEGQFLNMLLK-LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~-~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
++.....+.++..+.. .....++||+-+|+|..++..++.- ..+++.||.+.+.+...++|++..+...+++++..|
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d 101 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence 3444556666776666 4788999999999999999877652 469999999999999999999999988899999999
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCcc--chHHHHHHHH----hcCCCCeEEEEec
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADKD--NYLNYHKRLI----ELVKVGGVIGYDN 190 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~~--~~~~~l~~~~----~~L~~gG~lv~d~ 190 (247)
+...++.+. ..++||+||+|.+.. -.......+. ..|+|+|.+++..
T Consensus 102 a~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 102 ALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 987776652 123599999999843 2322333333 6799999999864
No 135
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.24 E-value=1.1e-10 Score=90.76 Aligned_cols=106 Identities=26% Similarity=0.275 Sum_probs=78.1
Q ss_pred HHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 66 DEGQFLNMLLK-LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 66 ~~~~~l~~l~~-~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
...+++..+.. ..+..+|||+|||.|..+..++.. +.+++++|+++.+++. .++....-+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~ 73 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPP 73 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhh
Confidence 34556666664 567889999999999999988664 4599999999998776 12333333332221
Q ss_pred HHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
. ..++||+|++... ..+...+++.+.++|+|||++++....
T Consensus 74 ~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 74 F-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp C-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred c-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 1 1689999998765 345678999999999999999997765
No 136
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.24 E-value=1.5e-10 Score=95.31 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=79.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..+..+|||+|||+|..+..++.. +.+++++|+++++++.|++++...+..+++++.++|+.+. .++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence 346789999999999999999864 4699999999999999999998877666899999998653 368
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 157 FDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 157 fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
||+|+.-.. .......+..+.+.+++++++.+.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999986322 223456678888888888777764
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.23 E-value=1.4e-11 Score=101.33 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=77.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCC-----cEEEEEecchhhhHHHHhhhcCCC
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAH-----KIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~-----~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
++|||+|||+|..+..||+. ++.|++||.++++++.|++........+ ++++.+.++.+. .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999976 6899999999999999999844333222 366666666433 46
Q ss_pred ceeEEEEcCCc---cchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 156 SFDFIFVDADK---DNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 156 ~fD~v~id~~~---~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+||.|++--.. .+...+++.+.++|+|||.+++..+-
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 79999876543 34567888889999999999987653
No 138
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.23 E-value=1.9e-10 Score=104.07 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=83.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..++.+++. ..+|+++|+++.+++.|++|+...++ ++++++.+|+.+.++.+.. ...+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~---~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPW---AGQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHh---cCCCC
Confidence 34579999999999999999976 35899999999999999999999887 5799999999877665321 13579
Q ss_pred eEEEEcCCccc-hHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDN-YLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~-~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|++|.+... ....++.+. .++|++++++
T Consensus 364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 99999998654 566666655 4889988775
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.22 E-value=1.6e-10 Score=93.48 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=84.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
..+||||||.|...+.+|...| +..++|+|+....+..+.+.+...++ .++.++++|+...+..+.+ ++++|-|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CCchheE
Confidence 3789999999999999999987 89999999999999999999999888 6799999999998887753 4789999
Q ss_pred EEcCC----c-c------chHHHHHHHHhcCCCCeEEEE
Q 025824 161 FVDAD----K-D------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 161 ~id~~----~-~------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++..+ + . -...+++.+.+.|+|||.|.+
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 88643 1 1 236799999999999999975
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=1.7e-10 Score=105.63 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=80.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..+..+|||||||+|..+..+++. ..+|+++|+++++++.+++. .+...+++++++|+.+....+ ..++
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~-----~~~~ 103 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI-----SDGS 103 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC-----CCCC
Confidence 345679999999999999999976 35999999999999876552 233357999999985321111 2578
Q ss_pred eeEEEEcCCc-----cchHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 157 FDFIFVDADK-----DNYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 157 fD~v~id~~~-----~~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
||+|++.... .....+++.+.+.|+|||++++.+..+.
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 9999987542 2246788999999999999999766543
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.21 E-value=2.3e-10 Score=94.33 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=87.1
Q ss_pred HHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 67 EGQFLNMLLKL----VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 67 ~~~~l~~l~~~----~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
..+++...+.. .++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 104 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVED 104 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHH
Confidence 33444444442 34779999999999999988875 357999999999999999998876652 58888888866
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEec
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..... .++||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 105 ~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 105 LAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 54321 368999988643 3456778899999999999998754
No 142
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.6e-10 Score=94.72 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHHHHHHHHHcCCCCc--EEEEEecchhhhHHHHhhh
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPD-----DGKILAMDINRENYELGLPVIQKAGVAHK--IDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~g~~~~--i~~~~gd~~~~l~~l~~~~ 151 (247)
+..++||++||+|-.+..+.+..+. +++|+.+|++|++++.+++...+.++... +.++.+|+.+. | +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F---- 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F---- 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C----
Confidence 3468999999999999999998763 28999999999999999998877777644 89999999654 4 2
Q ss_pred cCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEE
Q 025824 152 KNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 152 ~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++.+||...+... ..+....++++++.|||||.+.+
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 4789998887654 56778899999999999999886
No 143
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.19 E-value=1e-10 Score=97.96 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=85.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC---CCcEEEEEecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV---AHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~---~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
..++++||-||-|.|..+..+++.- +-.+++.+|+++..++.|++++..... .+|++++.+|+..++...
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 3479999999999999998887653 357999999999999999999886432 368999999999988764
Q ss_pred CC-ceeEEEEcCCc-------cchHHHHHHHHhcCCCCeEEEEec
Q 025824 154 HG-SFDFIFVDADK-------DNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 154 ~~-~fD~v~id~~~-------~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
.+ +||+|++|... --..++++.+.+.|+|||+++..-
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 45 89999999762 123689999999999999999753
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.18 E-value=4.3e-10 Score=90.53 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHH
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLL 147 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l 147 (247)
+........+..+|||+|||+|..+..++....+.++|+++|+++.+ .. .+++++++|+.+. +..+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33334444667899999999999999998887557899999999964 11 3578888887542 1221
Q ss_pred HhhhcCCCceeEEEEcCCc-------c-------chHHHHHHHHhcCCCCeEEEEe
Q 025824 148 IQDEKNHGSFDFIFVDADK-------D-------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~-------~-------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.... ..++||+|++++.. . .....+..+.+.|+|||.+++.
T Consensus 91 ~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1111 24679999987531 0 1256788889999999999985
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=3.3e-10 Score=89.66 Aligned_cols=103 Identities=13% Similarity=-0.025 Sum_probs=79.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||+|||+|..+..+++. .++++++|+++.+++.+++++.. .++++++++|+.+.... ..+|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~~ 78 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQP 78 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccCC
Confidence 45578999999999999999976 47999999999999999998854 25799999999876321 3469
Q ss_pred eEEEEcCCccchHHHHHHHHh--cCCCCeEEEEecccc
Q 025824 158 DFIFVDADKDNYLNYHKRLIE--LVKVGGVIGYDNTLW 193 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~--~L~~gG~lv~d~~~~ 193 (247)
|.|+.+.+.....+.+..+.. .+.++|++++..-..
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 999998875544566666664 345888888765443
No 146
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=4.1e-10 Score=79.95 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=78.1
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
+++|+|||.|..+..++. ....+++++|++++.+..+++..... ...+++++.+|..+.... ..++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPE------ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccc------cCCceEEEE
Confidence 489999999999998887 23689999999999998888644333 335799999998776431 146899999
Q ss_pred EcCCcc----chHHHHHHHHhcCCCCeEEEEe
Q 025824 162 VDADKD----NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 162 id~~~~----~~~~~l~~~~~~L~~gG~lv~d 189 (247)
++.... .....++.+.+.++|||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 987633 4567888888999999999875
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.15 E-value=6.2e-10 Score=108.90 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=74.3
Q ss_pred cCHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC---------
Q 025824 63 TSADEGQFLNMLLKLV----NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV--------- 129 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~----~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--------- 129 (247)
..+++..++..+.... ++.+|||+|||+|..++.++...+ .++|+++|+++++++.|++|+..+++
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~ 176 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYD 176 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccc
Confidence 3466677777643321 236899999999999999999876 67999999999999999999987643
Q ss_pred ------CCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 130 ------AHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 130 ------~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
.++++++++|..+.+... ..+||+|+.+.+
T Consensus 177 ~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPP 212 (1082)
T PLN02672 177 GEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIP 212 (1082)
T ss_pred cccccccccEEEEECchhhhcccc------CCceEEEEECCC
Confidence 257999999998765321 237999987654
No 148
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=2e-10 Score=92.96 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=81.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCC-CCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGV-AHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~-~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+|||.++|-||.++..++. ++ +|+++|.+|..++.|.-|-=..++ +..|+++.||+.+.++.+ .++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~ 204 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDE 204 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Ccc
Confidence 35689999999999999987765 55 999999999998887654322222 235899999999999988 478
Q ss_pred ceeEEEEcCCcc------chHHHHHHHHhcCCCCeEEE
Q 025824 156 SFDFIFVDADKD------NYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 156 ~fD~v~id~~~~------~~~~~l~~~~~~L~~gG~lv 187 (247)
+||+|+.|.+.- -..++++++.+.|+|||.++
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 999999998721 22578899999999999995
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=97.47 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
..+|||++||+|..++.++...+ ..+|+++|++++.++.+++|++.+++. +++++.+|+.+.+.. .++||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence 35899999999999999988765 468999999999999999999998884 578999999776542 257999
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
|++|.. .....+++.+...+++||+|.+.
T Consensus 129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999986 44467888878889999999985
No 150
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.13 E-value=2.9e-10 Score=88.72 Aligned_cols=106 Identities=19% Similarity=0.328 Sum_probs=82.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+.+|||+|||.|.....|++.-- .++++++|.+++.++.|+...++.++++.|+|.+.|..+- .. ..++||+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdl 139 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDL 139 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeE
Confidence 45999999999999999987632 3579999999999999999999999988899999998763 21 1467777
Q ss_pred EE---------EcCC--ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 160 IF---------VDAD--KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 160 v~---------id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
|+ +.++ .....-|+..+.++|+|||++++--.-|
T Consensus 140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 75 2222 2333567788889999999999865544
No 151
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.13 E-value=4e-10 Score=91.13 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=77.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
..+...|+|+.||.|+.++.+|+..+ ..+|+++|++|..++..++|++.+++.+++.++++|+.+.++ ...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence 35678999999999999999998543 679999999999999999999999999999999999988765 378
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
||-|+++.++.. ..+++.+..++++||++.
T Consensus 170 ~drvim~lp~~~-~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLPESS-LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--TSSG-GGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECChHHH-HHHHHHHHHHhcCCcEEE
Confidence 999999887543 468888999999999986
No 152
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.12 E-value=1.4e-09 Score=96.23 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=87.1
Q ss_pred ccccCHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE
Q 025824 60 IMTTSADEGQFLN-MLLKLVN--AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 60 ~~~~~~~~~~~l~-~l~~~~~--~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
+.++++...+.+. .+..... ..+|||++||+|..++.+++.. .+|+++|.++.+++.|++|+...++ ++++++
T Consensus 184 F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~ 259 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQII 259 (362)
T ss_pred eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 3445555444444 3333322 3579999999999999988764 4899999999999999999999888 479999
Q ss_pred EecchhhhHHHHhhhc---------CCCceeEEEEcCCccc-hHHHHHHHHhcCCCCeEEEE
Q 025824 137 EGPALPVLDLLIQDEK---------NHGSFDFIFVDADKDN-YLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 137 ~gd~~~~l~~l~~~~~---------~~~~fD~v~id~~~~~-~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+|+.+.++.+..... ...+||+||+|.+... ....++.+.+ |++++++
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYI 318 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEE
Confidence 9999888766532100 0125899999998544 3445555543 6777765
No 153
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.11 E-value=2.3e-09 Score=91.67 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=109.0
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 63 TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+......+....+...+..+|||++++.|.=|..+++.+...+.+++.|+++..+...++++++.|.. ++.+...|+..
T Consensus 69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~ 147 (283)
T PF01189_consen 69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARK 147 (283)
T ss_dssp EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHH
T ss_pred ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccc
Confidence 33555566666666677789999999999999999999987899999999999999999999999984 57887788877
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCccch-------------------------HHHHHHHHhcC----CCCeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADKDNY-------------------------LNYHKRLIELV----KVGGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~~~~-------------------------~~~l~~~~~~L----~~gG~lv~d~~~~ 193 (247)
..+... ...||.|++|++++.. .+.++.+.+.+ +|||++| |
T Consensus 148 ~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv-----Y 217 (283)
T PF01189_consen 148 LDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV-----Y 217 (283)
T ss_dssp HHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE-----E
T ss_pred cccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE-----E
Confidence 655442 3469999999873221 34667777899 9999999 4
Q ss_pred cccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEE
Q 025824 194 NGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEIC 232 (247)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 232 (247)
..+...++++. ..++.|. .++|+++..
T Consensus 218 sTCS~~~eENE---------~vV~~fl---~~~~~~~l~ 244 (283)
T PF01189_consen 218 STCSLSPEENE---------EVVEKFL---KRHPDFELV 244 (283)
T ss_dssp EESHHHGGGTH---------HHHHHHH---HHSTSEEEE
T ss_pred EeccHHHHHHH---------HHHHHHH---HhCCCcEEE
Confidence 55555555432 3444444 356666554
No 154
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.10 E-value=9.4e-10 Score=93.05 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=82.5
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
.+...+.....++|||||||.||.+..|+..- ...|++||.++.+....+-.-+-.|...++.+ .....+.++.
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~-lplgvE~Lp~--- 179 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFE-LPLGVEDLPN--- 179 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEE-cCcchhhccc---
Confidence 34444445678999999999999999998763 35799999999887654433333443322333 3334455553
Q ss_pred hhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 150 DEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
.+.||+||+-+. ..+....+..+...|+|||.+|++.....|
T Consensus 180 ----~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 180 ----LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred ----cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 368999998776 456678889999999999999988776554
No 155
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.10 E-value=2.3e-10 Score=89.29 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=59.7
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
+.|+|+.||.|..++.+|+.. .+|++||+++..++.|+.|.+-.|+.++|++++||+.+.++.+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 368999999999999999985 489999999999999999999999999999999999988766521 1228999
Q ss_pred EEcCC
Q 025824 161 FVDAD 165 (247)
Q Consensus 161 ~id~~ 165 (247)
|++.+
T Consensus 74 FlSPP 78 (163)
T PF09445_consen 74 FLSPP 78 (163)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99976
No 156
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=6e-10 Score=92.63 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=76.5
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALP---DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~ 145 (247)
..+.......++.+|||+|||+|..+..|++..+ ++.+++++|+++++++.|++..... ++++..+++.+. +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~ 124 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-V 124 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-c
Confidence 3344444445678999999999999998886542 2469999999999999998876533 356666655332 2
Q ss_pred HHHhhhcCCCceeEEEEcCCcc-----chHHHHHHHHhcCCCCeEEEEeccc
Q 025824 146 LLIQDEKNHGSFDFIFVDADKD-----NYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 146 ~l~~~~~~~~~fD~v~id~~~~-----~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
. .+++||+|++...-. .....++.+.+.++ |.+++.+..
T Consensus 125 ~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 125 A------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred c------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 1 157899999865421 23468888888887 555565554
No 157
>PRK05785 hypothetical protein; Provisional
Probab=99.08 E-value=1.3e-09 Score=90.31 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=73.1
Q ss_pred HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 70 FLNMLLKL-VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 70 ~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
++..+... .++.+|||+|||+|..+..+++.. +.+|+++|+++++++.|++. ..++++|+.+. +-
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~-- 106 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PF-- 106 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CC--
Confidence 34444332 346799999999999999998765 47999999999999998763 13467887643 32
Q ss_pred hhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCe
Q 025824 149 QDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGG 184 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG 184 (247)
.+++||+|++... ..+....++++.+.|||..
T Consensus 107 ----~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 ----RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 2689999997654 3456788999999999954
No 158
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.8e-09 Score=89.28 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
++.+ ++-.++...+..+|+|-|+|+|..+..+++++.+.|+++++|..+..++.|++-++..|+.+++++.+.|....-
T Consensus 92 ~Dia-~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 92 PDIA-MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred ccHH-HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 4444 455566778889999999999999999999998899999999999999999999999999999999988875431
Q ss_pred HHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCe-EEE
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGG-VIG 187 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG-~lv 187 (247)
... ....+|.||+|.+. .+..+..+.+.||.+| .++
T Consensus 171 F~~-----ks~~aDaVFLDlPa--Pw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 171 FLI-----KSLKADAVFLDLPA--PWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccc-----cccccceEEEcCCC--hhhhhhhhHHHhhhcCceEE
Confidence 111 14689999999863 3445556666777666 444
No 159
>PHA03411 putative methyltransferase; Provisional
Probab=99.06 E-value=3.1e-09 Score=89.39 Aligned_cols=97 Identities=11% Similarity=0.181 Sum_probs=73.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
....+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++ .+++++++|+.+... ..+|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kF 127 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKF 127 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCC
Confidence 3457999999999999998887654 579999999999999998864 258899999976532 4689
Q ss_pred eEEEEcCCccc-----------h------------HHHHHHHHhcCCCCeEEEEe
Q 025824 158 DFIFVDADKDN-----------Y------------LNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 158 D~v~id~~~~~-----------~------------~~~l~~~~~~L~~gG~lv~d 189 (247)
|+|+.+.+... + .+.+.....+|+|+|.+.+-
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99999865110 1 23444445789999876653
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.05 E-value=2.9e-09 Score=94.18 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=87.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
.+|||..||+|.-++.+++..+...+|+++|++++.++.+++|++.+++. ++++.++|+...+... ..+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence 48999999999999999987542468999999999999999999988774 6899999998887653 4679999
Q ss_pred EEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 161 FVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
++|.. ....++++.+.+.+++||+|.+.-
T Consensus 119 dlDPf-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 119 DIDPF-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EeCCC-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 99994 444689999999999999999863
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.05 E-value=4.5e-09 Score=92.62 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=85.9
Q ss_pred cccCHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE
Q 025824 61 MTTSADEGQFLN-MLLKLVN--AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
Q Consensus 61 ~~~~~~~~~~l~-~l~~~~~--~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~ 137 (247)
.++++...+.+. ....... +.+|||+|||+|..++.+++.. .+|+++|+++++++.|++|+...++. +++++.
T Consensus 176 ~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~ 251 (353)
T TIGR02143 176 TQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIR 251 (353)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 344454444443 4434332 3579999999999999998774 48999999999999999999999884 699999
Q ss_pred ecchhhhHHHHhh-------h-c-CCCceeEEEEcCCccc-hHHHHHHHHhcCCCCeEEEEe
Q 025824 138 GPALPVLDLLIQD-------E-K-NHGSFDFIFVDADKDN-YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 138 gd~~~~l~~l~~~-------~-~-~~~~fD~v~id~~~~~-~~~~l~~~~~~L~~gG~lv~d 189 (247)
+|+.+.++..... + . ....||+||+|.+... ....++.+.+ |++++++.
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 9998877642110 0 0 0124899999998544 3455565544 77777763
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=89.30 Aligned_cols=107 Identities=19% Similarity=0.296 Sum_probs=78.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC---------------------------
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV--------------------------- 129 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--------------------------- 129 (247)
...++.+|||||-+|..|+.+++.+. ...|+|+||++..+..|+++++...-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 35678999999999999999999986 56799999999999999998874310
Q ss_pred -------CCcEEEEEe----cchhhhHHHHhhhcCCCceeEEEEc---------CCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 130 -------AHKIDFREG----PALPVLDLLIQDEKNHGSFDFIFVD---------ADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 130 -------~~~i~~~~g----d~~~~l~~l~~~~~~~~~fD~v~id---------~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+++.+... +..+++ .+ ....||+|++= ...+....+|..+.++|.|||++|+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 011222111 112233 22 25789999752 22467789999999999999999985
Q ss_pred c
Q 025824 190 N 190 (247)
Q Consensus 190 ~ 190 (247)
-
T Consensus 209 P 209 (288)
T KOG2899|consen 209 P 209 (288)
T ss_pred C
Confidence 3
No 163
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.6e-09 Score=86.53 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=86.2
Q ss_pred HHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHHHHHHHHHcCC---------CCcEE
Q 025824 66 DEGQFLNMLLK-LVNAKNTMEIGVYTGYSLLATALALPDD-GKILAMDINRENYELGLPVIQKAGV---------AHKID 134 (247)
Q Consensus 66 ~~~~~l~~l~~-~~~~~~vLEiG~g~G~st~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~g~---------~~~i~ 134 (247)
..+..+..|-. +.+.-+.||+|+|+||.+.+++.-+... +..++||.-++.++.+++++.+.-- ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 34555555553 4566789999999999999999765434 4459999999999999999986431 14688
Q ss_pred EEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 135 FREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 135 ~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+++||.....++ ..+||.|++.+..... -+.+...|+|||.|++
T Consensus 148 ivvGDgr~g~~e-------~a~YDaIhvGAaa~~~---pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 148 IVVGDGRKGYAE-------QAPYDAIHVGAAASEL---PQELLDQLKPGGRLLI 191 (237)
T ss_pred EEeCCccccCCc-------cCCcceEEEccCcccc---HHHHHHhhccCCeEEE
Confidence 999999876553 5899999999875433 3566778899998886
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.01 E-value=4.8e-09 Score=83.33 Aligned_cols=107 Identities=24% Similarity=0.290 Sum_probs=71.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--CCCcEEEEEecchhhh-HHHHhhhcC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVL-DLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gd~~~~l-~~l~~~~~~ 153 (247)
..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++++..-+..+.. +... .
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~ 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence 45778999999999999999998753 68999999999 9999999999876 5567888887775533 2221 2
Q ss_pred CCceeEEEEc-C--CccchHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVD-A--DKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id-~--~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+||+|+.. . ....+..+++.+..+|+++|.+++-
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4689999853 2 2566788888899999998886653
No 165
>PHA03412 putative methyltransferase; Provisional
Probab=99.01 E-value=5.1e-09 Score=86.20 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=75.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALP--DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
....+|||+|||+|..++.+++.++ +..+|+++|+++.+++.|++++. ++.++.+|..... + .+
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~ 113 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DT 113 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cC
Confidence 3467999999999999999988653 35799999999999999998753 4788899886532 1 46
Q ss_pred ceeEEEEcCCc-----cc----------hHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFDFIFVDADK-----DN----------YLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD~v~id~~~-----~~----------~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+||+|+.+.+. .+ ...++..+.+++++|+.|+-.+.
T Consensus 114 ~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 89999988661 11 23466777788888887554433
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-08 Score=80.58 Aligned_cols=87 Identities=20% Similarity=0.379 Sum_probs=68.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
...+.|+|+|||||..++..+.. + ..+|+|+|++++.++.+++|..+ +..+++++++|..++ ..++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~----------~~~~ 109 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF----------RGKF 109 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc----------CCcc
Confidence 45678999999999998876643 2 47999999999999999999998 336799999999765 5789
Q ss_pred eEEEEcCC-----ccchHHHHHHHHh
Q 025824 158 DFIFVDAD-----KDNYLNYHKRLIE 178 (247)
Q Consensus 158 D~v~id~~-----~~~~~~~l~~~~~ 178 (247)
|.++++.+ +..-..+++..++
T Consensus 110 dtvimNPPFG~~~rhaDr~Fl~~Ale 135 (198)
T COG2263 110 DTVIMNPPFGSQRRHADRPFLLKALE 135 (198)
T ss_pred ceEEECCCCccccccCCHHHHHHHHH
Confidence 99999876 2223455565554
No 167
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.98 E-value=1.3e-09 Score=88.12 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+.||+|+|.|..|..++..+ --+|..+|..+++++.|++++...+ ....++.+....++-|. .++||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence 35689999999999998776443 4699999999999999998876521 12356677777666553 47999
Q ss_pred EEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE-eccccccc-ccCCCCC
Q 025824 159 FIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY-DNTLWNGS-VVAPPDA 203 (247)
Q Consensus 159 ~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~-d~~~~~g~-~~~~~~~ 203 (247)
+|++-.. ..+...+|+.|...|+|+|+|++ +|+.-.|. +.++++.
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds 176 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS 176 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence 9998643 45678899999999999999999 66666665 6677664
No 168
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=87.59 Aligned_cols=105 Identities=20% Similarity=0.252 Sum_probs=84.2
Q ss_pred hCCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEE
Q 025824 55 KHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKID 134 (247)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~ 134 (247)
..+|...+..+....+-........+..|+|.-||.|..++.++.. ...|++||++|..+..|+.|++-.|+.++|+
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRIT 146 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence 3456444544544444455555568889999999999999999976 4589999999999999999999999999999
Q ss_pred EEEecchhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 135 FREGPALPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 135 ~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
|++||..+....+... ...+|+||..++
T Consensus 147 FI~GD~ld~~~~lq~~---K~~~~~vf~spp 174 (263)
T KOG2730|consen 147 FICGDFLDLASKLKAD---KIKYDCVFLSPP 174 (263)
T ss_pred EEechHHHHHHHHhhh---hheeeeeecCCC
Confidence 9999999988877543 345889998766
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.98 E-value=4.2e-09 Score=86.63 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=85.5
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH-HHHHcC------
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLP-VIQKAG------ 128 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g------ 128 (247)
.+|..-..+|...+++.. ....++.+||..|||.|+-..+|++. +.+|+++|+++..++.+.+ +-....
T Consensus 15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGG 90 (218)
T ss_dssp -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence 345555566777777766 34456679999999999999999985 6799999999999887732 211000
Q ss_pred ----CCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEc-----CCccchHHHHHHHHhcCCCCeEEEE
Q 025824 129 ----VAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVD-----ADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 129 ----~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id-----~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
-..+|++++||.++.-+.. .++||+|+=- .+.....++.+.+.++|+|||.+++
T Consensus 91 ~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eeeecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 1246899999998754321 3589999732 2356778899999999999999544
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=98.98 E-value=1.1e-08 Score=86.06 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=78.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C-CCcEEEEEecchhhhHHHHhhh
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gd~~~~l~~l~~~~ 151 (247)
....+|++||-||.|-|..+..+++. + .+|+.+|++++.++.+++++.... + .+|++++.. +.+.
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~---- 135 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL---- 135 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc----
Confidence 34578899999999999999999987 3 399999999999999999877532 2 368888751 1111
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..++||+|++|... .+.+++.+.+.|+|||+++.
T Consensus 136 -~~~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 136 -DIKKYDLIICLQEP--DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred -cCCcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEE
Confidence 13689999999642 36788999999999999996
No 171
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.96 E-value=4.4e-09 Score=84.12 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=81.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
+++|||||.|.-++.++-..| +.+++.+|...+.+...+......|+. +++++++.+.+ .. ...+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999999887 899999999999999999999999995 79999999977 11 258999999
Q ss_pred EcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 162 VDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 162 id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.-+.. ....+++.+.+++++||.+++
T Consensus 121 aRAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 98863 567888999999999999985
No 172
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.95 E-value=1.6e-08 Score=87.50 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=69.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC----CCcEEEEEecchhhhHHHHhhhcCC
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
++.+|||+|||+|..++.+++. +.+|+++|+++.+++.|+++.+..+. ..++++..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 4679999999999999999974 57999999999999999999876532 13578888886432 4
Q ss_pred CceeEEEEcCCcc-----chHHHHHHHHhcCCCCeEEEE
Q 025824 155 GSFDFIFVDADKD-----NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 155 ~~fD~v~id~~~~-----~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++||+|++-..-. .....+..+. .+.+||+++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 6899998643311 1223444444 3567777664
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=1.3e-08 Score=83.87 Aligned_cols=132 Identities=10% Similarity=0.002 Sum_probs=88.7
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH------HH---
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVI------QK--- 126 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~------~~--- 126 (247)
.+|......+...+.+..+. ..+..+||..|||.|.-+.+|++. +.+|+++|+++..++.+.+.. ..
T Consensus 21 ~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 21 VGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccc
Confidence 44544444455444444332 124579999999999999999985 678999999999988764411 00
Q ss_pred --cCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcC-----CccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 127 --AGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDA-----DKDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 127 --~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~-----~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
.--..+++++++|.++.-+.-. ..++||+|+--+ +.+...++.+.+.++|+|||.+++-..-+.+
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~----~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~ 168 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIAN----NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK 168 (226)
T ss_pred cceeccCceEEEEccCcCCCcccc----ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence 0002469999999987522100 136899986432 3556678999999999999998876544443
No 174
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=1.7e-08 Score=80.67 Aligned_cols=121 Identities=21% Similarity=0.172 Sum_probs=86.8
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCcchHHHHHHHHHHcCCCCcE
Q 025824 62 TTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDG--------KILAMDINRENYELGLPVIQKAGVAHKI 133 (247)
Q Consensus 62 ~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~--------~v~~iD~~~~~~~~a~~~~~~~g~~~~i 133 (247)
.+.+..+..|-.++...+...|||--||+|...+..+....... +++++|+++++++.|++|++.+|+...+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34577777788888777778999999999999987665543222 4999999999999999999999998899
Q ss_pred EEEEecchhhhHHHHhhhcCCCceeEEEEcCCc-----------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 134 DFREGPALPVLDLLIQDEKNHGSFDFIFVDADK-----------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 134 ~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~-----------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+.+.|+.+.- + ..+.+|.|+.|.+. .-|..+++.+.+.+++..++++.
T Consensus 91 ~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999997654 1 25799999999872 23456677777889996666653
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.92 E-value=1.3e-08 Score=87.98 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc-CCCCcEEEEE-ecchhhhHHHHhhhcCCCce
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA-GVAHKIDFRE-GPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~-gd~~~~l~~l~~~~~~~~~f 157 (247)
..++||||||+|.....++...+ +.+++++|+++..++.|++|++.. ++.++|+++. .+..+.+..+.. ..+.|
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~f 190 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNERF 190 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCce
Confidence 46899999999999888887766 789999999999999999999999 7988999975 343333322210 14689
Q ss_pred eEEEEcCC
Q 025824 158 DFIFVDAD 165 (247)
Q Consensus 158 D~v~id~~ 165 (247)
|+|++..+
T Consensus 191 DlivcNPP 198 (321)
T PRK11727 191 DATLCNPP 198 (321)
T ss_pred EEEEeCCC
Confidence 99999876
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=88.50 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
....+-.+..-......+|+|.-+|.|+.++.+|..-. .+|+++|+||..++..++|++.+++.++++.++||+.+..
T Consensus 174 rl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~ 251 (341)
T COG2520 174 RLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA 251 (341)
T ss_pred CchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh
Confidence 33344444333445589999999999999999998743 3499999999999999999999999888999999999887
Q ss_pred HHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 145 DLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.+ +.+|-|++..++. ...++..+...+++||+|.++...
T Consensus 252 ~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 252 PEL-------GVADRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred hcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEecc
Confidence 753 7899999988753 356788888999999999987665
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=1.5e-08 Score=86.95 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
.|+.++ ..+.....+...+...+..+|||||||+|..|..+++. ..+|+++|+++.+++.+++++...+..+++++
T Consensus 14 ~GQnFL-~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~i 89 (294)
T PTZ00338 14 FGQHIL-KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEV 89 (294)
T ss_pred CCcccc-CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEE
Confidence 344333 23444444444444556689999999999999999875 45899999999999999999988776678999
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCCc
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADK 166 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~ 166 (247)
+++|+.+.. ...||.|+.+.+.
T Consensus 90 i~~Dal~~~---------~~~~d~VvaNlPY 111 (294)
T PTZ00338 90 IEGDALKTE---------FPYFDVCVANVPY 111 (294)
T ss_pred EECCHhhhc---------ccccCEEEecCCc
Confidence 999997641 2478999887764
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-08 Score=78.39 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
.++.++|||||+|+.+..+++.+.++..+.++|+||++++..++..+.++. ++..++.|..+.+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 478899999999999999999988789999999999999999999988775 58888998877665 47899
Q ss_pred EEEEcCCc------------------------cchHHHHHHHHhcCCCCeEEEEe
Q 025824 159 FIFVDADK------------------------DNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 159 ~v~id~~~------------------------~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+++.+.+. +-...++..+-.+|.|.|++..-
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 88876541 00123445555788999998864
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.88 E-value=8.2e-09 Score=86.26 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=80.8
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
....+.++|||||.|.|..+..++++.| +.+++.+|. |+.++.+++ .+||+++.||..+.+|
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P--------- 157 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP--------- 157 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---------
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---------
Confidence 3345667999999999999999999998 899999999 777888777 5799999999985543
Q ss_pred CceeEEEEcCC-----ccchHHHHHHHHhcCCCC--eEEEEeccccc
Q 025824 155 GSFDFIFVDAD-----KDNYLNYHKRLIELVKVG--GVIGYDNTLWN 194 (247)
Q Consensus 155 ~~fD~v~id~~-----~~~~~~~l~~~~~~L~~g--G~lv~d~~~~~ 194 (247)
. +|++++-.. .+....+++++.+.|+|| |.|++.+.+++
T Consensus 158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 3 999998654 345567899999999999 99999887754
No 180
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=3.4e-08 Score=80.49 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=83.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc-ee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS-FD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~-fD 158 (247)
+++++|||+|.|.-++.+|-..| +.+++-+|...+.+...+......|+ ++++++++.+.++-.. .+ ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997666 77899999999999999999999998 5699999999776432 23 99
Q ss_pred EEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 159 FIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 159 ~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+|..-+. ......++.+.+++++||.+++
T Consensus 138 ~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 9998775 3467788999999999988763
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.87 E-value=2.2e-08 Score=77.30 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=92.4
Q ss_pred cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc
Q 025824 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~ 140 (247)
..+++..++.+...+....+.-|||+|.|+|..|..+++..-+...++++|.+++++....+... -++++.||+
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda 103 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDA 103 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccccch
Confidence 34556777777777777778899999999999999988876557899999999998877666543 356999999
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+.-..+... ....||.|+..-+ ......+++.+...|..||.++-
T Consensus 104 ~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 104 FDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 7654344332 2568999997655 34456789999999999999984
No 182
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.87 E-value=2.8e-08 Score=79.99 Aligned_cols=132 Identities=17% Similarity=0.065 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhc-CCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 67 EGQFLNMLLKLV-NAK-NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 67 ~~~~l~~l~~~~-~~~-~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+..++..+.+.. ... +|||||||+|--+.+++..+| ..+-..-|.++......+.++...++.+-..-+.-|+.+..
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 333444444432 233 599999999999999999998 78888999999988888888888877532222344443321
Q ss_pred HHHH-hhhcCCCceeEEEEcC-----CccchHHHHHHHHhcCCCCeEEEEecccccccccC
Q 025824 145 DLLI-QDEKNHGSFDFIFVDA-----DKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVA 199 (247)
Q Consensus 145 ~~l~-~~~~~~~~fD~v~id~-----~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~ 199 (247)
.... ..+...++||.||+-. +......+|..+.++|++||.+++-..+..+....
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence 1110 0000146899998642 24556778888899999999999988775544333
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.87 E-value=3.3e-09 Score=85.84 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=92.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
-+++||+|||||..+..+-... .+++++|+|..|++.|.+. |+-+ ++.++++..+++.+ ..++||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccc
Confidence 5799999999999988876553 4899999999999888662 3212 45567776666544 3679999
Q ss_pred EEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc---ccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeEEe
Q 025824 160 IFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL---WNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICM 233 (247)
Q Consensus 160 v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 233 (247)
|..--. ......+|-....+|+|||.+.+.--- +.|.+..|.. +|- +-+.+.+......+++..-
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~----RyA-----H~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ----RYA-----HSESYVRALLAASGLEVIA 262 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh----hhc-----cchHHHHHHHHhcCceEEE
Confidence 864211 234455666677899999999974221 2333333332 111 1233333344455665442
Q ss_pred e-----------ecCCeeEEEEEc
Q 025824 234 L-----------PVGDGVTICRRI 246 (247)
Q Consensus 234 l-----------p~~dG~~i~~k~ 246 (247)
+ |+..++.|++|+
T Consensus 263 ~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 263 IEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred eecccchhhcCCCCCCceEEEecC
Confidence 2 677888888876
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=4.3e-08 Score=88.23 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=95.2
Q ss_pred CccccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEE
Q 025824 59 NIMTTSADEGQFLNMLLK----LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKID 134 (247)
Q Consensus 59 ~~~~~~~~~~~~l~~l~~----~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~ 134 (247)
.+.+.++...+-|...+. ..+..++||+=||.|..++.+|.. ..+|+++|++++.++.|++|++.+++.+ ++
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~ 344 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VE 344 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EE
Confidence 456677777766665443 335579999999999999999954 4699999999999999999999999965 99
Q ss_pred EEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 135 FREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 135 ~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|..+++.++.+... ....+|.|++|.+.....+.+-+....++|-.++.+
T Consensus 345 f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYV 394 (432)
T COG2265 345 FIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYV 394 (432)
T ss_pred EEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEE
Confidence 99999998877642 135789999999966666444444456677777765
No 185
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=5.3e-08 Score=82.29 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
.|..+. +.+.....+...+...+..+|||||||+|..|..+++. ..+++++|+++.+++.+++++.. .+++++
T Consensus 7 ~GQnfl-~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~i 79 (258)
T PRK14896 7 LGQHFL-IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEI 79 (258)
T ss_pred CCcccc-CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEE
Confidence 344433 34555555555555566789999999999999999986 35899999999999999988854 257999
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCCc
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADK 166 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~ 166 (247)
+++|+.+.. ...||.|+...+.
T Consensus 80 i~~D~~~~~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 80 IEGDALKVD---------LPEFNKVVSNLPY 101 (258)
T ss_pred EEeccccCC---------chhceEEEEcCCc
Confidence 999997642 2358999887663
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.82 E-value=4.2e-08 Score=90.38 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=82.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
....+||||||.|..++.+|...| +..++|+|+....+..+.+.+...++ .++.++.+|+......+ .++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhc-----Cccccc
Confidence 456899999999999999999988 78999999999998888888888887 56888888875443333 257899
Q ss_pred EEEEcCC----c-c------chHHHHHHHHhcCCCCeEEEE
Q 025824 159 FIFVDAD----K-D------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 159 ~v~id~~----~-~------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
-|++..+ | . -.+.+++.+.+.|+|||.|.+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 8887543 1 1 136789999999999999886
No 187
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.80 E-value=2.8e-08 Score=79.00 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=88.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+|||+|||.|....+|... ++.+.+++|++++.+..+.+ .| +.++++|+.+.+..+ ++++||
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f-----~d~sFD 77 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADF-----PDQSFD 77 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhC-----CCCCcc
Confidence 4679999999999998888775 37899999999987655433 34 579999999888776 478999
Q ss_pred EEEEcCCc---cchHHHHHHHHhcCCCCeEEEEecc---------cccccccCCCCCcchhh--hchHHHHHHHHHHHHH
Q 025824 159 FIFVDADK---DNYLNYHKRLIELVKVGGVIGYDNT---------LWNGSVVAPPDAPLRKY--VRYYRDFVLELNKALA 224 (247)
Q Consensus 159 ~v~id~~~---~~~~~~l~~~~~~L~~gG~lv~d~~---------~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~ 224 (247)
.|++.-.- .+....++++.+.- ..+++-+-|. ++.|.+.....-|+.=| .+-....+++|.+.+.
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~EmlRVg-r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEMLRVG-RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHHHhc-CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 99987552 23344555555443 3466667776 33565543332221111 1223456788887776
Q ss_pred cC
Q 025824 225 AD 226 (247)
Q Consensus 225 ~~ 226 (247)
+.
T Consensus 157 ~~ 158 (193)
T PF07021_consen 157 EL 158 (193)
T ss_pred HC
Confidence 54
No 188
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.80 E-value=2.4e-08 Score=80.78 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..+|||+|||+|..+..++... +..++++|+++++++.+++ .+++++++|+.+.++.+ .+++||
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD 77 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFD 77 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcC
Confidence 55799999999999998887653 4678999999998887753 23678889886543322 257899
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCC
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKV 182 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~ 182 (247)
+|++... ..+....++.+.+.+++
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9998754 23455667777766654
No 189
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.80 E-value=4.7e-08 Score=84.36 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=95.6
Q ss_pred cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-c
Q 025824 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-P 139 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d 139 (247)
.++.|..+..+-.++...++..|||--||||...+...-- +++++|+|++.+++.-|+.|++..++.+ ..+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 3567999999999999999999999999999988876543 7899999999999999999999999755 444444 8
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCc------------cchHHHHHHHHhcCCCCeEEEE
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADK------------DNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~------------~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+... + | ..+.+|.|..|.+. +-|.+.++.+...|++||++++
T Consensus 255 a~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 255 ATNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred cccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 8654 3 4 24579999999871 1266788888899999999986
No 190
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.77 E-value=1.7e-08 Score=84.05 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=81.9
Q ss_pred cCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCCcc-------------------
Q 025824 63 TSADEGQFLNMLLKL----VNAKNTMEIGVYTGYSLLATALAL---P-DDGKILAMDINRE------------------- 115 (247)
Q Consensus 63 ~~~~~~~~l~~l~~~----~~~~~vLEiG~g~G~st~~la~~~---~-~~~~v~~iD~~~~------------------- 115 (247)
++...-..|..++.. .-|..|+|+||..|.+++.++..+ . ++-+++++|..+.
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 344444455554443 346789999999999987765432 2 2457999987431
Q ss_pred -------hHHHHHHHHHHcCC-CCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC-ccchHHHHHHHHhcCCCCeEE
Q 025824 116 -------NYELGLPVIQKAGV-AHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD-KDNYLNYHKRLIELVKVGGVI 186 (247)
Q Consensus 116 -------~~~~a~~~~~~~g~-~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~-~~~~~~~l~~~~~~L~~gG~l 186 (247)
..+..++++.+.|+ .++++++.|...+.++.. +.+++-++.+|++ .+.....|+.+++.|.|||+|
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 23445566666664 468999999999988865 2568999999998 566778899999999999999
Q ss_pred EEeccccc
Q 025824 187 GYDNTLWN 194 (247)
Q Consensus 187 v~d~~~~~ 194 (247)
++||..+.
T Consensus 209 i~DDY~~~ 216 (248)
T PF05711_consen 209 IFDDYGHP 216 (248)
T ss_dssp EESSTTTH
T ss_pred EEeCCCCh
Confidence 99997653
No 191
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=9.1e-09 Score=83.91 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+.+|||||||.|.+...+.+..+. +-+|+++|.+|.+++..+++-.... .++...+-|.... .+. ..-..+++|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~~-~~~~~~svD 146 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SLK-EPPEEGSVD 146 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hcc-CCCCcCccc
Confidence 348999999999999999988762 3799999999999888887655432 3454444444221 111 001356888
Q ss_pred EEEE-----cCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 159 FIFV-----DADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 159 ~v~i-----d~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+|.+ -..++.....++.+.++|||||.|++-|.
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 6642 22367778899999999999999998765
No 192
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.74 E-value=7.8e-08 Score=87.06 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=76.6
Q ss_pred CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 80 AKNTMEIGVYTGYSLLATALAL---PDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+.|+++|||+|-.+...+++. ....+|++||.++.+....++.+...++.++|+++++|+.+.-. ..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4679999999999987776654 22469999999998887777777888999999999999987632 469
Q ss_pred eeEEEEc---C--CccchHHHHHHHHhcCCCCeEEE
Q 025824 157 FDFIFVD---A--DKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 157 fD~v~id---~--~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
.|+|+.- . ..+-.++.+....+.|+|||+++
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999743 1 23456677888889999999998
No 193
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.74 E-value=5.7e-08 Score=83.14 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
+++..+. ..+...+||++||.|..|..+++.++++++|+++|.++++++.|++.+.. .+++++++++..+....+.
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 3444442 23456999999999999999999987789999999999999999988865 3689999999988755442
Q ss_pred hhhcCCCceeEEEEcCC
Q 025824 149 QDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~ 165 (247)
. + ..++|.|++|..
T Consensus 86 ~-~--~~~vDgIl~DLG 99 (296)
T PRK00050 86 E-G--LGKVDGILLDLG 99 (296)
T ss_pred c-C--CCccCEEEECCC
Confidence 1 1 238999999865
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.72 E-value=5.6e-08 Score=83.51 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=80.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
+.+.+.|||+|||+|-.++.-|++- ..+|+++|-+.- ++.|++.+..+++.+.|+++.|...+. .| +.++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEE--ec-----Cccc
Confidence 5678999999999999999988874 469999999765 599999999999999999999999876 33 1378
Q ss_pred eeEEEEcCC--ccchHHHHHHHH----hcCCCCeEEEEecc
Q 025824 157 FDFIFVDAD--KDNYLNYHKRLI----ELVKVGGVIGYDNT 191 (247)
Q Consensus 157 fD~v~id~~--~~~~~~~l~~~~----~~L~~gG~lv~d~~ 191 (247)
.|+|+.... .--+...++.++ +.|+|||++.-+-.
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 998875432 111222333332 68999999985443
No 195
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.71 E-value=8.5e-08 Score=81.02 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-HcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 80 AKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 80 ~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
|++|+=||||. -.+++.|++....+..++++|++++..+.+++.+. ..|+..+++|+.+|..+....+ ..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccC
Confidence 56999999994 45667777654447899999999999999999998 6678889999999987654333 689
Q ss_pred eEEEEcCCcc----chHHHHHHHHhcCCCCeEEEEe
Q 025824 158 DFIFVDADKD----NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 158 D~v~id~~~~----~~~~~l~~~~~~L~~gG~lv~d 189 (247)
|+||+-+-.. .-.+.++.+.+.++||+.|++-
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9999877644 7789999999999999999975
No 196
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.70 E-value=1.5e-07 Score=80.17 Aligned_cols=100 Identities=15% Similarity=0.012 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
.+.....+...+...+..+|||||||+|..|..++... .+|+++|+++++++.+++++.. .+++++++|+.+.
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 34444444444445567899999999999999999874 3999999999999999887642 5799999999865
Q ss_pred hHHHHhhhcCCCceeEEEEcCCccchHHHHHHHH
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLI 177 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~ 177 (247)
-.. .-.+|.|+...+..-...++..+.
T Consensus 100 ~~~-------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 100 DLS-------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred CHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence 211 111577777666433344454444
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.70 E-value=3.9e-07 Score=76.66 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=91.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
..+|-+||||.||.|...+......|. ..+|...|.++..++..++.++..|+.+-++|.++|+++.- .+.+ ...
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~---l~p 208 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA---LDP 208 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc---cCC
Confidence 357789999999999999988888774 36899999999999999999999999887899999998752 2211 145
Q ss_pred ceeEEEEcCCccc------hHHHHHHHHhcCCCCeEEEEeccccccc
Q 025824 156 SFDFIFVDADKDN------YLNYHKRLIELVKVGGVIGYDNTLWNGS 196 (247)
Q Consensus 156 ~fD~v~id~~~~~------~~~~l~~~~~~L~~gG~lv~d~~~~~g~ 196 (247)
.++++++.+-.+- ....+.-+...+.|||++|..+--|+.+
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 6899998765221 2345677778999999999777666543
No 198
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.70 E-value=2.5e-07 Score=77.97 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+.....+-..+...+..+|||||||+|..+..+++..+ +++++|+++.+++.+++++.. ..+++++++|+.+..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC
Confidence 44444333344455678999999999999999998753 699999999999999887743 357999999997642
Q ss_pred HHHHhhhcCCCcee---EEEEcCCccchHHHHHHHH
Q 025824 145 DLLIQDEKNHGSFD---FIFVDADKDNYLNYHKRLI 177 (247)
Q Consensus 145 ~~l~~~~~~~~~fD---~v~id~~~~~~~~~l~~~~ 177 (247)
. ..+| +|+.+.+..-....+..+.
T Consensus 89 ~---------~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 89 L---------PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred h---------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 2 2344 7766655433344444444
No 199
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.68 E-value=2.8e-08 Score=81.11 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHH
Q 025824 68 GQFLNMLLKLVNAK-NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDL 146 (247)
Q Consensus 68 ~~~l~~l~~~~~~~-~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~ 146 (247)
..++..++...... .++|+|||+|-.++.+++... +|+++|+++.+++.|++.....-.....++...+..+.+.
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g- 96 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG- 96 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-
Confidence 45666666655544 789999999977777887643 8999999999999887754321111112222222222221
Q ss_pred HHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCe-EEEE
Q 025824 147 LIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGG-VIGY 188 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG-~lv~ 188 (247)
.+++.|+|.+--. .-+..++++.+.+.||+.| +|++
T Consensus 97 ------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 97 ------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 2689999986432 2456788999999999866 7765
No 200
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.62 E-value=3e-07 Score=81.06 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=71.7
Q ss_pred CccccCHHHHHHHHHHH-hhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 59 NIMTTSADEGQFLNMLL-KLVN--AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 59 ~~~~~~~~~~~~l~~l~-~~~~--~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
.+.++.+...+.+...+ ...+ +..|||+-||+|..++.+|... .+|+++|+++++++.|++|++.+++ ++++|
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f 248 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEF 248 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEE
T ss_pred cCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceE
Confidence 35566677666555543 3322 3489999999999999999764 5999999999999999999999998 57999
Q ss_pred EEecchhhhHHHHhh-------h--cCCCceeEEEEcCCccchH-HHHHHH
Q 025824 136 REGPALPVLDLLIQD-------E--KNHGSFDFIFVDADKDNYL-NYHKRL 176 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~-------~--~~~~~fD~v~id~~~~~~~-~~l~~~ 176 (247)
+.+++.+....+... + .....+|+|++|++..... ..++.+
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 999887654432110 0 0123689999999854443 344444
No 201
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.59 E-value=2e-07 Score=75.14 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+.-|||||||+|.|+-.+... +-..+++|+++.|++.|.+.--+ =.++.+|.-+-+|- ..++||-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glpf------rpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPF------RPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCC------CCCccce
Confidence 678999999999998877653 55789999999999999862111 24667777666654 3689998
Q ss_pred EEEc--------CC------ccchHHHHHHHHhcCCCCeEEEE
Q 025824 160 IFVD--------AD------KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 160 v~id--------~~------~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++.- ++ +.....+|..++..|++|+..|+
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 7642 22 23445678888899999998875
No 202
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.3e-07 Score=69.23 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=64.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
...++++|+|||+|..++ +-.++....|+|+|++|+.++.+++|.....+ ++.+++.|..+.... .+.|
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~f 115 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIF 115 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeE
Confidence 457899999999999884 44456567999999999999999999998776 579999998776443 5789
Q ss_pred eEEEEcCC
Q 025824 158 DFIFVDAD 165 (247)
Q Consensus 158 D~v~id~~ 165 (247)
|.++++.+
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999976
No 203
>PRK04148 hypothetical protein; Provisional
Probab=98.57 E-value=1.3e-06 Score=65.98 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhH
Q 025824 67 EGQFLNMLLKLVNAKNTMEIGVYTGY-SLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
Q Consensus 67 ~~~~l~~l~~~~~~~~vLEiG~g~G~-st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~ 145 (247)
.++++.......+.++|||||||+|. .+..|++. +..|+++|++++.++.++++ .++++.+|..+.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 34455554444456889999999997 66666643 67999999999977776554 26889999987655
Q ss_pred HHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCC
Q 025824 146 LLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKV 182 (247)
Q Consensus 146 ~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~ 182 (247)
.+ .+.+|+|..--+.....+.+-.+.+.+.-
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 54 46899999766655555555555554443
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.56 E-value=2.5e-07 Score=78.96 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=103.1
Q ss_pred cccccccccccccccCCcHHHHHHHHHhcCCCCCcHHHHHHHH-HHHhCCCCccccCHHHHHHHHHHHhh-cCCCEEEEE
Q 025824 9 QNQQGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRE-LTAKHPWNIMTTSADEGQFLNMLLKL-VNAKNTMEI 86 (247)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLEi 86 (247)
...+.+...|....+..-+++..++... ..++.+..+.. .+...-..+. .+..-..|...+.. .++-+|+-.
T Consensus 49 ~l~~rl~~r~~~~g~~s~~~y~~~L~~~----~~~~e~~~li~~ltineT~FFR--d~~~f~~L~~~~~~~~~~irIWSA 122 (287)
T PRK10611 49 MVYNRLVRRLRSLGLNDFGQYLALLESN----QNSAEWQAFINALTTNLTAFFR--EAHHFPILAEHARRRSGEYRVWSA 122 (287)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhcC----CCHHHHHHHHHHhhCCCCCccC--CcHHHHHHHHHHHhcCCCEEEEEc
Confidence 3444445555555666666666666431 22344444433 3433333332 35555566554432 234699999
Q ss_pred cccccHHHHHHH----hhCC---CCCEEEEEeCCcchHHHHHHH------------------HHHc-----C-------C
Q 025824 87 GVYTGYSLLATA----LALP---DDGKILAMDINRENYELGLPV------------------IQKA-----G-------V 129 (247)
Q Consensus 87 G~g~G~st~~la----~~~~---~~~~v~~iD~~~~~~~~a~~~------------------~~~~-----g-------~ 129 (247)
||.+|--...|| +..+ .+.+|+++|+|+..++.|++- +... | +
T Consensus 123 gCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~l 202 (287)
T PRK10611 123 AASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQEL 202 (287)
T ss_pred cccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHH
Confidence 999998554444 3222 146899999999999988763 2110 1 2
Q ss_pred CCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcC-----CccchHHHHHHHHhcCCCCeEEEEe
Q 025824 130 AHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDA-----DKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 130 ~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~-----~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
...|+|...|..+.-.. ..+.||+||+-. +.......++.+...|+|||+|++.
T Consensus 203 r~~V~F~~~NL~~~~~~------~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 203 ANYVDFQQLNLLAKQWA------VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HccCEEEcccCCCCCCc------cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 25678888887652111 136899999743 2345677889999999999999864
No 205
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.53 E-value=8e-07 Score=77.99 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=90.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+|||.++..|.-|.++|..+...|.|++.|.+...+...+.|+.+.|+. +..+...|..++..... .++|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~~f 313 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PGSF 313 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----Cccc
Confidence 45679999999999999999999987899999999999999999999999985 46666777765432211 2489
Q ss_pred eEEEEcCCccch-------------------------HHHHHHHHhcCCCCeEEEEecccccccccCCCCC
Q 025824 158 DFIFVDADKDNY-------------------------LNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDA 203 (247)
Q Consensus 158 D~v~id~~~~~~-------------------------~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~ 203 (247)
|-|++|++++.. .+.|..+..++++||+|| |+.+.+.++++
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV-----YSTCSI~~~EN 379 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV-----YSTCSITVEEN 379 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE-----EEeeecchhhh
Confidence 999999874430 234555568999999999 56666666654
No 206
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-06 Score=74.07 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=100.0
Q ss_pred ccccccccccccccCCcHHHHHHHHHhcCCCCCcHHHHH-HHHHHHhCCCCccccCHHHHHHHHHHHh-----hc--CCC
Q 025824 10 NQQGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKE-LRELTAKHPWNIMTTSADEGQFLNMLLK-----LV--NAK 81 (247)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~--~~~ 81 (247)
+.+.+...|....+..=+++++++.. . ...+++ +...+...-+.+. .++.-..+...+. .. ++-
T Consensus 27 v~~Rl~~~~~~~~~~~~~~y~~~l~~-----~-~~e~~~~l~~ltin~T~FFR--~~~~f~~l~~~v~p~l~~~~~~~~i 98 (268)
T COG1352 27 VYRRLSRRLRKLGLKNFEEYLNLLES-----D-SEELQAFLDALTINVTEFFR--DPEHFEELRDEVLPELVKRKKGRPI 98 (268)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHhC-----C-HHHHHHHHHHhhhccchhcc--CcHHHHHHHHHHHHHHHhhccCCce
Confidence 33444444544555554555555543 2 333333 4555554444333 2455444444332 22 367
Q ss_pred EEEEEcccccHHH----HHHHhhCCC----CCEEEEEeCCcchHHHHHHH-------------------HHHcC------
Q 025824 82 NTMEIGVYTGYSL----LATALALPD----DGKILAMDINRENYELGLPV-------------------IQKAG------ 128 (247)
Q Consensus 82 ~vLEiG~g~G~st----~~la~~~~~----~~~v~~iD~~~~~~~~a~~~-------------------~~~~g------ 128 (247)
+|+-.||++|--. +.+.+.++. ..+|++.|+|...++.|+.- +.+.+
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 8999999999633 344455542 57999999999999888641 11110
Q ss_pred ---CCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 129 ---VAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 129 ---~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+...|+|...|..+.-+ . .+.||+||+-.. ...-.+.++.....|+|||+|++.
T Consensus 179 ~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 179 KEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11457777777765432 2 478999998543 445567888889999999999973
No 207
>PRK10742 putative methyltransferase; Provisional
Probab=98.46 E-value=1.1e-06 Score=72.94 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=72.2
Q ss_pred HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc------CC--CCcEEEEEe
Q 025824 69 QFLNMLLKLVNAK--NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA------GV--AHKIDFREG 138 (247)
Q Consensus 69 ~~l~~l~~~~~~~--~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~--~~~i~~~~g 138 (247)
+.|...+...+.. +|||+-+|+|..++.+++. +++|+.+|.++......+++++.+ +. ..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4454455544544 8999999999999999976 788999999999999999999985 32 257999999
Q ss_pred cchhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 139 PALPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 139 d~~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
|+.+++... ..+||+||+|..
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999998764 358999999987
No 208
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.46 E-value=8.9e-07 Score=77.24 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC---------CCCcEEEEEecchhh-hHHHH
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG---------VAHKIDFREGPALPV-LDLLI 148 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---------~~~~i~~~~gd~~~~-l~~l~ 148 (247)
+..+|||+|||-|.-..-+..+- -.+++|+|++.+.++.|++..+... ..-...++.+|.... +....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56799999999888766555542 4699999999999999998883211 112467788887542 22111
Q ss_pred hhhcCCCceeEEEEcCC-------ccchHHHHHHHHhcCCCCeEEEE
Q 025824 149 QDEKNHGSFDFIFVDAD-------KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~-------~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.. ...+||+|=+-.. ......++..+...|+|||+++.
T Consensus 140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 10 1259999966432 34456789999999999999995
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.44 E-value=2.7e-06 Score=73.51 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=83.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHH--HHHHHcC---C-CCcEEEEEecchhhhHHHHhh
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGL--PVIQKAG---V-AHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~--~~~~~~g---~-~~~i~~~~gd~~~~l~~l~~~ 150 (247)
..+.++||-+|.|-|.-...+.+. |.-.+|+-+|.+|++++.++ ..+...+ + ..|++++..|+...+..-
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 356789999999999888888764 54579999999999999999 4444332 1 268999999999888764
Q ss_pred hcCCCceeEEEEcCCccc--------hHHHHHHHHhcCCCCeEEEEe
Q 025824 151 EKNHGSFDFIFVDADKDN--------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~--------~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+.||+|++|-...+ ..+++..+.+.|+++|.+++-
T Consensus 363 ---~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 363 ---ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred ---cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 579999999975322 246778888999999999963
No 210
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=1.4e-06 Score=70.96 Aligned_cols=97 Identities=23% Similarity=0.212 Sum_probs=67.1
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEE
Q 025824 83 TMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFV 162 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~i 162 (247)
|.||||--|+..++|++.-. ..+++++|+++..++.|++++...|+.++|+++.||.++.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999998743 4689999999999999999999999999999999999887753 234798887
Q ss_pred cCC-ccchHHHHHHHHhcCCCCeEEE
Q 025824 163 DAD-KDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 163 d~~-~~~~~~~l~~~~~~L~~gG~lv 187 (247)
-+. -.-..++++.....++....+|
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEE
Confidence 654 2233444444444444433343
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.43 E-value=1.9e-06 Score=71.65 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+....-+..-+...++..|||||.|+|..|..|.++ +.+|+++|+++.++....+.+.....+++.++++||....
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT- 119 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-
Confidence 444444444455567789999999999999999987 5799999999999999988887766678999999998765
Q ss_pred HHHHhhhcCCCceeEEEEcCC
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~ 165 (247)
+...||.++.+.+
T Consensus 120 --------d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 120 --------DLPRFDGCVSNLP 132 (315)
T ss_pred --------CCcccceeeccCC
Confidence 1367898887654
No 212
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.42 E-value=8e-07 Score=69.66 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=60.2
Q ss_pred EEEeCCcchHHHHHHHHHHc--CCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCC
Q 025824 108 LAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKV 182 (247)
Q Consensus 108 ~~iD~~~~~~~~a~~~~~~~--g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~ 182 (247)
+++|+++++++.|++..... +...+++++++|+.+. +. .+++||+|++... ..+....++++.+.|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 48999999999998776532 2235799999999754 32 2578999987643 34577889999999999
Q ss_pred CeEEEEeccc
Q 025824 183 GGVIGYDNTL 192 (247)
Q Consensus 183 gG~lv~d~~~ 192 (247)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999886653
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=4.3e-06 Score=70.05 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=66.6
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh-HHHHhhhc
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL-DLLIQDEK 152 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l-~~l~~~~~ 152 (247)
.+...+..+|||||+|.|..|..|++. ..+|+++|+|+.++...++.+. ..+++++++||+...- +.+
T Consensus 25 ~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l----- 93 (259)
T COG0030 25 AANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL----- 93 (259)
T ss_pred hcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-----
Confidence 334445678999999999999999987 4589999999999998888775 2368999999998752 221
Q ss_pred CCCceeEEEEcCCccchHHHHHHH
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRL 176 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~ 176 (247)
..++.|+.+.+..=.-+++..+
T Consensus 94 --~~~~~vVaNlPY~Isspii~kl 115 (259)
T COG0030 94 --AQPYKVVANLPYNISSPILFKL 115 (259)
T ss_pred --cCCCEEEEcCCCcccHHHHHHH
Confidence 1678888877643333333333
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.38 E-value=1.9e-06 Score=73.67 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=77.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
...+.|||+|||+|-.+...+.+- ..+|+++|-+ ++++.|++.++.+++.+||+++.|...+. +| .++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence 356789999999999988887763 4699999985 58999999999999999999999998765 22 5789
Q ss_pred eEEEEcCC-----ccchHHHHHHHHhcCCCCeEEE
Q 025824 158 DFIFVDAD-----KDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 158 D~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+|+.... .+...+-+-.+.+.|+|.|-+.
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 98886543 2233333334458999999876
No 215
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.1e-06 Score=77.18 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=89.2
Q ss_pred ccccCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 60 IMTTSADEGQFLNMLLKL----VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 60 ~~~~~~~~~~~l~~l~~~----~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
+.+.+...++.|+..+.. ...+.+||+.||+|.+++.+++.. .+|++||++++.++.|++|...+|+ .+.+|
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~F 435 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI-SNATF 435 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc-cceee
Confidence 456667778888877654 345678999999999999999764 5999999999999999999999998 57999
Q ss_pred EEecchhhhHHHHhhhcCCCcee-EEEEcCCccch-HHHHHHHHhcCCCCeEEE
Q 025824 136 REGPALPVLDLLIQDEKNHGSFD-FIFVDADKDNY-LNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD-~v~id~~~~~~-~~~l~~~~~~L~~gG~lv 187 (247)
++|-+.+.++.+.... -..-+ ++++|.+.... ..+++.+...-++--++.
T Consensus 436 i~gqaE~~~~sl~~~~--~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTPC--CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred eecchhhccchhcccC--CCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence 9999988888774321 12345 67788874333 344444444433444433
No 216
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.37 E-value=4e-06 Score=70.55 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=111.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc--CCC-CcEEEEEecchhhhHHHHhh
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA--GVA-HKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~-~~i~~~~gd~~~~l~~l~~~ 150 (247)
+.+..+|++||-||-|-|......++. +.-..++-+|++...++..++++... |.. .++.++.||...++...
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~--- 191 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL--- 191 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---
Confidence 345578999999999999887766665 33468999999999999999999853 443 58999999999888776
Q ss_pred hcCCCceeEEEEcCCc-------cchHHHHHHHHhcCCCCeEEEE-ecccccccccCCCCCcchhhhchHHHHHHHHHHH
Q 025824 151 EKNHGSFDFIFVDADK-------DNYLNYHKRLIELVKVGGVIGY-DNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKA 222 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~-------~~~~~~l~~~~~~L~~gG~lv~-d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (247)
..++||+|+.|.+. --...++..+.+.||+||+++. .+.+|- ...+...++.|...
T Consensus 192 --~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------------~~~~i~e~r~~~~~ 255 (337)
T KOG1562|consen 192 --KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL--------------HLDYIKEGRSFCYV 255 (337)
T ss_pred --ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH--------------HHHHHHHHHHhHHH
Confidence 26899999999762 1224678888999999999986 223331 13445567777777
Q ss_pred HHcCCCeeEEeeec----CCeeEEEEE
Q 025824 223 LAADPRIEICMLPV----GDGVTICRR 245 (247)
Q Consensus 223 i~~~~~~~~~~lp~----~dG~~i~~k 245 (247)
+...-.+-.+..|. .-|+.++.|
T Consensus 256 ~f~~t~ya~ttvPTypsg~igf~l~s~ 282 (337)
T KOG1562|consen 256 IFDLTAYAITTVPTYPSGRIGFMLCSK 282 (337)
T ss_pred hcCccceeeecCCCCccceEEEEEecc
Confidence 77766666666663 246666653
No 217
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.33 E-value=1.1e-06 Score=72.59 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=57.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEE-EEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKID-FREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~-~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+.++|||+|||+|..+..+++. + ..+|+++|+++.++.. .+... .++. +...|+...-+.-... +-..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~~---~~v~~~~~~ni~~~~~~~~~~--d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQD---ERVKVLERTNIRYVTPADIFP--DFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhcC---CCeeEeecCCcccCCHhHcCC--Cceee
Confidence 5568999999999999999985 2 4689999999987654 12211 2222 2222332111110000 12468
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|++|+.. ...+..+.+.|+| |.+++
T Consensus 145 DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 145 DVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 8888744 2357788888899 66663
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.31 E-value=1.6e-06 Score=68.34 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=76.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
...+.|+|+|+|-.+...+.+ .-+|++||.+|..++.|.+|++-.|. .+++++.||+.++- -+..|.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~ADv 99 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENADV 99 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------ccccce
Confidence 378999999999998887776 35999999999999999999977776 67999999998762 246788
Q ss_pred EEEcC---C--ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 160 IFVDA---D--KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 160 v~id~---~--~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
|++.. . .+.....+..++..||.++.|+--.+
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence 87532 1 23445667777788888888874333
No 219
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.30 E-value=1.1e-05 Score=65.00 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=81.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC--CCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+||+||-|.|-....+-++-| .+.+.||.+|+.++.-+. .|. .++|.++.|-..+.++.+. ++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~-----d~ 168 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLP-----DK 168 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhcccc-----cc
Confidence 5788999999999988777766543 577889999997655444 333 3678999999999988883 67
Q ss_pred ceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 156 SFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 156 ~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
.||=|+.|.- .++...+.+.+.++|||+|++-.=|-+
T Consensus 169 ~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 169 HFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred CcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 8999999987 345566778889999999999865554
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.29 E-value=7.2e-06 Score=71.09 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=83.1
Q ss_pred CccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCcchHHHHHHHHHHcCCCC-
Q 025824 59 NIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAL------PDDGKILAMDINRENYELGLPVIQKAGVAH- 131 (247)
Q Consensus 59 ~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~- 131 (247)
+...++....+++..++...+..+|+|-+||+|.....+.+.+ ....+++|+|+++..+..|+-++.-.+...
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3344567788888888877777789999999999988877643 136799999999999999998887666543
Q ss_pred cEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCcc------------------------chHHHHHHHHhcCCCCeEEE
Q 025824 132 KIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKD------------------------NYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 132 ~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~------------------------~~~~~l~~~~~~L~~gG~lv 187 (247)
...+..+|........ ....||+|+...+.. ....++..+...|++||.++
T Consensus 106 ~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp GCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 3568888876542210 136899999876511 11247788889999999754
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.28 E-value=2.7e-06 Score=67.84 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh-----hhHHHHhhhcC
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-----VLDLLIQDEKN 153 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~-----~l~~l~~~~~~ 153 (247)
+..+|||+||++|.++..+++...+.++|+++|+.+. ... ..+..+.+|..+ .+.....+ .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~--~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPE--S 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGT--T
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccc--c
Confidence 4579999999999999999988744689999999987 111 345555666543 12221111 1
Q ss_pred CCceeEEEEcCC--------cc------chHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDAD--------KD------NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~--------~~------~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+++|+|+.|.. .. -....+..+...|+|||.+|+-
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 268999999983 11 1123444555789999988864
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.27 E-value=3.7e-06 Score=68.04 Aligned_cols=104 Identities=26% Similarity=0.316 Sum_probs=64.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhC----C----CCCEEEEEeCCcchHHHHHH------------------HH-HHcC---
Q 025824 79 NAKNTMEIGVYTGYSLLATALAL----P----DDGKILAMDINRENYELGLP------------------VI-QKAG--- 128 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~----~----~~~~v~~iD~~~~~~~~a~~------------------~~-~~~g--- 128 (247)
++-+|+-.||++|--+..||-.+ + ...+|+++|+|+..++.|++ ++ ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46689999999998554443222 1 13599999999999998865 22 1111
Q ss_pred -----CCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 129 -----VAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 129 -----~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.++|+|...|..+..+. .+.||+||+-.. .......++.+...|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 125799999998872221 579999998654 344567888899999999999974
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.26 E-value=6.3e-06 Score=67.11 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=67.5
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-------HcCC-CCcEEEEEecchhh--h
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQ-------KAGV-AHKIDFREGPALPV--L 144 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~g~-~~~i~~~~gd~~~~--l 144 (247)
+...+....+|||||.|...+..+...+ -.+.+|||+.+...+.|+...+ ..|. ..++++..||..+. .
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3444567889999999999888776553 4569999999999887765443 2343 25788899998653 2
Q ss_pred HHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
..+ -...|+||++.. .+.....+......||+|..||.-..+
T Consensus 117 ~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 117 KDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 222 145799999765 344555667777889999999864433
No 224
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.22 E-value=8.6e-06 Score=69.40 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=74.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC-----CcEEEEEecchh-hhHHHHhhh
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPALP-VLDLLIQDE 151 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~gd~~~-~l~~l~~~~ 151 (247)
.+...++++|||-|.-.+-+-++- -+.++++|+.+..++.|++..+..... -.+.|+.+|... .+..+...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~- 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF- 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence 355689999999999888766552 369999999999999998776643221 247889998764 33333221
Q ss_pred cCCCceeEEEEcCC-------ccchHHHHHHHHhcCCCCeEEEE
Q 025824 152 KNHGSFDFIFVDAD-------KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 152 ~~~~~fD~v~id~~-------~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+.+||+|-+--. .......+..+.+.|+|||+++.
T Consensus 193 -~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 193 -KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred -CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 1344998843211 23445678888899999999984
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.22 E-value=1.1e-05 Score=77.29 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhh---CCC-------------------------------------
Q 025824 65 ADEGQFLNMLLKL-VNAKNTMEIGVYTGYSLLATALA---LPD------------------------------------- 103 (247)
Q Consensus 65 ~~~~~~l~~l~~~-~~~~~vLEiG~g~G~st~~la~~---~~~------------------------------------- 103 (247)
+..+.-+-.++.- .+...++|.+||+|...+..|.. .+|
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3333333334433 34578999999999999876642 111
Q ss_pred -CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 104 -DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 104 -~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
..+++++|+++++++.|++|+..+|+.+++++.++|+.+..... ..++||+|+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 23799999999999999999999999888999999997653221 1257999999976
No 226
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.21 E-value=4.8e-06 Score=73.89 Aligned_cols=106 Identities=22% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCC-cEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAH-KIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~-~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+-+|||.=+|+|.=++.++..++...+|+.-|++++.++..++|++.+++.+ ++++.+.|+...+.. ....||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD 123 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFD 123 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCC
Confidence 4589999999999999999987645799999999999999999999999987 799999999877642 257999
Q ss_pred EEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 159 FIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 159 ~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+|-+|..- ...++++.+.+.++.||+|.+.-+.
T Consensus 124 ~IDlDPfG-Sp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPFG-SPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--SS---HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCCC-CccHhHHHHHHHhhcCCEEEEeccc
Confidence 99999863 4568999999999999999986553
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.20 E-value=1.2e-05 Score=61.66 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=57.6
Q ss_pred HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHHcC--CCCcEEEEEe
Q 025824 68 GQFLNMLLKL----VNAKNTMEIGVYTGYSLLATALAL---PDDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREG 138 (247)
Q Consensus 68 ~~~l~~l~~~----~~~~~vLEiG~g~G~st~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~g 138 (247)
.+++..++.. .++.+|+|+|||.|+.+..++..+ .++.+|++||.++...+.+.+..+..+ +..++++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4455555544 677899999999999999999832 237899999999999999999888876 4456676666
Q ss_pred cchh
Q 025824 139 PALP 142 (247)
Q Consensus 139 d~~~ 142 (247)
+..+
T Consensus 90 ~~~~ 93 (141)
T PF13679_consen 90 DIAD 93 (141)
T ss_pred chhh
Confidence 5543
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.19 E-value=5.9e-06 Score=63.11 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=50.1
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
.+|||||+.|..+.+++...+ .++++++|+++++++.++++++..++. +++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 489999999999999998765 679999999999999999999988774 4887776554
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.3e-05 Score=63.27 Aligned_cols=100 Identities=21% Similarity=0.217 Sum_probs=71.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh--hhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~--~l~~l~~~~~~~~ 155 (247)
.+...|+|+|+..|.++..+++.+.++++|+++|+.|- ... ..|.++++|+.+ .+..+...- ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~-~~V~~iq~d~~~~~~~~~l~~~l-~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPI-PGVIFLQGDITDEDTLEKLLEAL-GGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccC-CCceEEeeeccCccHHHHHHHHc-CCC
Confidence 35689999999999999999999887888999999884 112 348899998864 333332211 234
Q ss_pred ceeEEEEcCCc--------cch------HHHHHHHHhcCCCCeEEEEec
Q 025824 156 SFDFIFVDADK--------DNY------LNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 156 ~fD~v~id~~~--------~~~------~~~l~~~~~~L~~gG~lv~d~ 190 (247)
++|+|+.|..+ .++ ...++.+...|+|||.+++-.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 57999999763 121 123455557999999999864
No 230
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.18 E-value=8.3e-05 Score=61.97 Aligned_cols=132 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+..++||||.|.|..|..++..+. +|++.|.|+.|.. .+++.|. +++. ..+. .. .+.+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~----~vl~--~~~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF----TVLD--IDDW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC----eEEe--hhhh-hc------cCCceE
Confidence 457899999999999999998765 7999999998753 3455554 3332 2221 11 146899
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCCCeEEEEecccccc-cc-------cCCCCCcchhhhchHHHHHHHHHHHHHcCC
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKVGGVIGYDNTLWNG-SV-------VAPPDAPLRKYVRYYRDFVLELNKALAADP 227 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 227 (247)
+|-+=.- +......++.+.+.|+|+|.+++.=++.-. .| ..|.+ ...-....+...+..|. .+.+.-
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e-~l~~~g~~~E~~v~~l~-~v~~p~ 231 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE-LLPVKGATFEEQVSSLV-NVFEPA 231 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh-hcCCCCCcHHHHHHHHH-HHHHhc
Confidence 9976332 456678999999999999999987665311 11 11111 11112255667777777 555667
Q ss_pred CeeEE
Q 025824 228 RIEIC 232 (247)
Q Consensus 228 ~~~~~ 232 (247)
+|+..
T Consensus 232 GF~v~ 236 (265)
T PF05219_consen 232 GFEVE 236 (265)
T ss_pred CCEEE
Confidence 77654
No 231
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.15 E-value=7.8e-05 Score=59.13 Aligned_cols=144 Identities=19% Similarity=0.139 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHH-HHHHHHcCCCCcEEEEEecc
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAL---PDDGKILAMDINRENYELG-LPVIQKAGVAHKIDFREGPA 140 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~---~~~~~v~~iD~~~~~~~~a-~~~~~~~g~~~~i~~~~gd~ 140 (247)
|..-...+.++-..+|..|+|+|+-.|.|++++|..+ +...+|+++|++-...+-+ ++ .++|.|+.|++
T Consensus 55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss 127 (237)
T COG3510 55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSS 127 (237)
T ss_pred HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCC
Confidence 4444555667777899999999999999999988753 2236999999988754332 22 35799999998
Q ss_pred hhhh--HH--HHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhhchHHH
Q 025824 141 LPVL--DL--LIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRD 214 (247)
Q Consensus 141 ~~~l--~~--l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~ 214 (247)
.+.- .. ..+. .-+-=+|+.|++ ..+....++.+.++|.-|-++++.|....+... |..+ .+......+
T Consensus 128 ~dpai~eqi~~~~~---~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p--~~~g~gP~~ 201 (237)
T COG3510 128 TDPAIAEQIRRLKN---EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLP--WRFGGGPYE 201 (237)
T ss_pred CCHHHHHHHHHHhc---CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccc--hhcCCChHH
Confidence 6521 11 1111 122345566766 456777888888999999999998877655432 1111 122334456
Q ss_pred HHHHHHH
Q 025824 215 FVLELNK 221 (247)
Q Consensus 215 ~~~~~~~ 221 (247)
++.+|.+
T Consensus 202 AVe~ylr 208 (237)
T COG3510 202 AVEAYLR 208 (237)
T ss_pred HHHHHHH
Confidence 6666543
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.11 E-value=3.2e-05 Score=66.51 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=68.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+...++|.-+|.|.-|..+++.++ .++|+++|.++..++.+++.+... .+++++++++..+....+...+ .+++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~--~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL--VTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC--CCcc
Confidence 4557899999999999999999987 499999999999999999988764 4689999999887655443222 3679
Q ss_pred eEEEEcCC
Q 025824 158 DFIFVDAD 165 (247)
Q Consensus 158 D~v~id~~ 165 (247)
|.|++|..
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99999865
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.10 E-value=2.2e-05 Score=73.02 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhh
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPD-------DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~ 151 (247)
...+|||.|||+|...+.++..++. ...++++|+++..+..++.++...+. ..+.+..+|..........+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~- 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIES- 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccc-
Confidence 3468999999999999988876641 25789999999999999999987652 23566666654321111000
Q ss_pred cCCCceeEEEEcCC
Q 025824 152 KNHGSFDFIFVDAD 165 (247)
Q Consensus 152 ~~~~~fD~v~id~~ 165 (247)
..+.||+|+...+
T Consensus 109 -~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 -YLDLFDIVITNPP 121 (524)
T ss_pred -ccCcccEEEeCCC
Confidence 1358999998766
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.02 E-value=6.2e-05 Score=61.35 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=72.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+||=+|.++|.+..+++....+.|.|+++|.++......-...++ ..||--+.+|+..-- .... --+..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~-~Y~~---lv~~V 144 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPE-KYRM---LVEMV 144 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGG-GGTT---TS--E
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChH-Hhhc---ccccc
Confidence 4567999999999999999999988899999999999765444433333 357888889986421 1110 13689
Q ss_pred eEEEEcCCccch-HHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNY-LNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~-~~~l~~~~~~L~~gG~lv~ 188 (247)
|+||.|-...+. .-+...+...||+||.+++
T Consensus 145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 145 DVIFQDVAQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence 999999875444 3455566679999998885
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.01 E-value=2.6e-05 Score=66.69 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=50.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc-CCCCcEEEEEecchh-hhHHHHhhhcCCCcee
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA-GVAHKIDFREGPALP-VLDLLIQDEKNHGSFD 158 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~gd~~~-~l~~l~~~~~~~~~fD 158 (247)
-++||||||....=-.|+.... +.++++.|+++..++.|+++++.+ ++.++|+++...... .+..+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence 4689999776654333444443 789999999999999999999999 999999998764332 3333321 146899
Q ss_pred EEEEcCC
Q 025824 159 FIFVDAD 165 (247)
Q Consensus 159 ~v~id~~ 165 (247)
+..+..+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9999776
No 236
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.98 E-value=3.4e-05 Score=62.30 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=66.9
Q ss_pred hCCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEE
Q 025824 55 KHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKID 134 (247)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~ 134 (247)
...||.- | ...++..+....+...|.|+|||-+..+ ..++..-+|+++|+... .+ .
T Consensus 52 v~~WP~n---P-vd~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~--~ 107 (219)
T PF05148_consen 52 VKKWPVN---P-VDVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NP--R 107 (219)
T ss_dssp HCTSSS----H-HHHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------ST--T
T ss_pred HhcCCCC---c-HHHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CC--C
Confidence 3468743 3 4556666666555678999999999876 33443458999999764 12 3
Q ss_pred EEEecchhhhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 135 FREGPALPVLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 135 ~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+...|.... |- ++++.|+++..-. ..++..++.++.+.|||||.+.+-++-
T Consensus 108 Vtacdia~v-PL------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANV-PL------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS--S--------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEecCccC-cC------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 556777443 32 2689999987654 678999999999999999999988765
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.97 E-value=7.2e-05 Score=65.75 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CC----------------------------C-------EEEE
Q 025824 68 GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALP---DD----------------------------G-------KILA 109 (247)
Q Consensus 68 ~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~---~~----------------------------~-------~v~~ 109 (247)
+.-+-.++.-.+...++|-=||+|...+..|...+ |+ + .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 33333344444556899999999999988665432 11 1 3789
Q ss_pred EeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCc-----------cchHHHHHHHHh
Q 025824 110 MDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADK-----------DNYLNYHKRLIE 178 (247)
Q Consensus 110 iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~-----------~~~~~~l~~~~~ 178 (247)
+|+++++++.|+.|...+|+.+.|+|.++|+...-+. .+.+|+|+++.+. .-|..+.+.+.+
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999755331 2689999998872 124445555567
Q ss_pred cCCCCeEEEE
Q 025824 179 LVKVGGVIGY 188 (247)
Q Consensus 179 ~L~~gG~lv~ 188 (247)
.++.-+..|+
T Consensus 333 ~~~~ws~~v~ 342 (381)
T COG0116 333 LLAGWSRYVF 342 (381)
T ss_pred HhcCCceEEE
Confidence 7777666664
No 238
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.96 E-value=2.5e-05 Score=59.34 Aligned_cols=83 Identities=23% Similarity=0.389 Sum_probs=59.6
Q ss_pred EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcC------C------ccchHHHH
Q 025824 106 KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDA------D------KDNYLNYH 173 (247)
Q Consensus 106 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~------~------~~~~~~~l 173 (247)
+|+++|+-++.++.+++.+++.++.+++++++.+-......+ + .+++|+++.+- + .+.....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-P----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-c----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 699999999999999999999999889999988765543333 1 24899998752 1 23456788
Q ss_pred HHHHhcCCCCeEEEEecccccc
Q 025824 174 KRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 174 ~~~~~~L~~gG~lv~d~~~~~g 195 (247)
+.++++|+|||+|++ +.|.|
T Consensus 76 ~~al~lL~~gG~i~i--v~Y~G 95 (140)
T PF06962_consen 76 EAALELLKPGGIITI--VVYPG 95 (140)
T ss_dssp HHHHHHEEEEEEEEE--EE--S
T ss_pred HHHHHhhccCCEEEE--EEeCC
Confidence 999999999999997 35555
No 239
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.92 E-value=0.0002 Score=62.20 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=75.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE--EEecchhhhHHHHhhhcCC
Q 025824 80 AKNTMEIGVYTGYSLLATALALPD---DGKILAMDINRENYELGLPVIQKAGVAHKIDF--REGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~--~~gd~~~~l~~l~~~~~~~ 154 (247)
...++|+|||.|.-+..|++++.+ ..+++++|+|.+.++.+.+.+....+ +.+++ ++||..+.+..+.... ..
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~-~~ 154 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPE-NR 154 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccc-cc
Confidence 447999999999999988887742 36899999999999999999883333 33555 7898877654442100 01
Q ss_pred CceeEEEEcC-C-----ccchHHHHHHHHh-cCCCCeEEEE
Q 025824 155 GSFDFIFVDA-D-----KDNYLNYHKRLIE-LVKVGGVIGY 188 (247)
Q Consensus 155 ~~fD~v~id~-~-----~~~~~~~l~~~~~-~L~~gG~lv~ 188 (247)
....+++.-+ . +.....++..+.+ .|+|||.+++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2345555433 2 3445678888888 9999998886
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.91 E-value=0.00018 Score=58.47 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
..++.||||--+|.+.++.+..+ ...+++.|+++..++.|.+++..+++.+++++..+|.+..+.. +..+|.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d~ 88 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEIDV 88 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcCE
Confidence 44599999999999999998866 7899999999999999999999999999999999999765542 458999
Q ss_pred EEEcCCc-cchHHHHHHHHhcCC
Q 025824 160 IFVDADK-DNYLNYHKRLIELVK 181 (247)
Q Consensus 160 v~id~~~-~~~~~~l~~~~~~L~ 181 (247)
|.+-+.- .-...+++.-...|+
T Consensus 89 ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 89 IVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred EEEeCCcHHHHHHHHHHhhhhhc
Confidence 9887652 233455555555554
No 241
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.91 E-value=4e-05 Score=66.25 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
-...+|+|.|.|..+..+....| +|-+++.+...+..+..++. .| |+.+.||.+...| +-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----------~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----------KGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----------CcCe
Confidence 36789999999999999998776 68889998888887777775 44 7888899876644 3468
Q ss_pred EEEc-----CCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 160 IFVD-----ADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 160 v~id-----~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
||+- ...++...+|+.|++.|+|||.|++-+..
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 8863 33567789999999999999887765443
No 242
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00012 Score=63.66 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+.+|+|-=+|+|.=++.++...+ ..+++.=|++|+.++..++|++.+.. ....++..|+...+..+ ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhc------CCCccE
Confidence 88999999999999999998876 34999999999999999999998743 34566669998777654 578999
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|=+|.. ....++++.+.+.++.||++.+.-+.
T Consensus 125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred EecCCC-CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 988876 34568899999999999999985553
No 243
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.88 E-value=9.2e-05 Score=62.72 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=76.3
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
.|..++. ++...+-+...+...+...|||||+|.|..|..|++.. .+++++|+++.+++..++.+. ..+++++
T Consensus 8 ~gQnFL~-~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~v 80 (262)
T PF00398_consen 8 LGQNFLV-DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEV 80 (262)
T ss_dssp CTSSEEE-HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEE
T ss_pred CCcCeeC-CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hccccee
Confidence 4444443 35555555555555678899999999999999999874 699999999999888877665 3468999
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHh
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIE 178 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~ 178 (247)
+.+|+.+.-.... .......|+...+..-...++..+..
T Consensus 81 i~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 81 INGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp EES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred eecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhh
Confidence 9999987522110 02345566666554444456666654
No 244
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.81 E-value=0.00019 Score=60.66 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHH---cC----------------------------
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK---AG---------------------------- 128 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~g---------------------------- 128 (247)
..+||--|||.|..+..+|.. +..+.+.|.|--|+-..+-.+.. .+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999976 67999999998876444333221 00
Q ss_pred --------CCCcEEEEEecchhhhHHHHhhhcCCCceeEE----EEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 129 --------VAHKIDFREGPALPVLDLLIQDEKNHGSFDFI----FVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 129 --------~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v----~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
...++.+..||..+....-. ..++||.| |||.. .+..++++.+.++|||||+.|--.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcc----cCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEecC
Confidence 01356667777766543210 13689987 46664 578899999999999999877433
No 245
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.78 E-value=0.00013 Score=58.49 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC------CCCcEEEEEecchhhhHHHHhhhcC
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG------VAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g------~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
.-.+.|||||.|...+.++..+| +.-+.+.|+-.+..+..++.+..+. .-.++.+...++..+++.+-..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--- 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--- 136 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence 34589999999999999999888 8899999999998888888887654 2256889999999999887542
Q ss_pred CCceeEEEEc-CCc------c----chHHHHHHHHhcCCCCeEEEE
Q 025824 154 HGSFDFIFVD-ADK------D----NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 154 ~~~fD~v~id-~~~------~----~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++.+-.|+- .++ . -...++....-+|++||.+..
T Consensus 137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 333322221 110 0 113456666678999999874
No 246
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.77 E-value=0.00012 Score=62.39 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=61.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..|++|||+|||.|..+......++.-.+++++|.++.+++.++..+........... ..... .... ...+.
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~~~~----~~~~~ 103 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLY---RDFL----PFPPD 103 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhh---cccc----cCCCC
Confidence 5788999999999987666666666456899999999999999997765432111111 11111 0000 12344
Q ss_pred eEEEEcCC-----ccchHHHHHHHHhcCCC
Q 025824 158 DFIFVDAD-----KDNYLNYHKRLIELVKV 182 (247)
Q Consensus 158 D~v~id~~-----~~~~~~~l~~~~~~L~~ 182 (247)
|+|++... ......+++.++..+.+
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence 99987543 23445667777777766
No 247
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.75 E-value=0.00026 Score=58.82 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLV-NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~-~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
+....+...+.... .+.+|+|||||.--.++.+.... ++..++++|++...++....++...+. ..++...|....
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSD 166 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTS
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeecc
Confidence 44556666665543 48899999999999998766443 478999999999999999999999886 466666777654
Q ss_pred hHHHHhhhcCCCceeEEEEc
Q 025824 144 LDLLIQDEKNHGSFDFIFVD 163 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id 163 (247)
.+ ....|+.++=
T Consensus 167 ~~--------~~~~DlaLll 178 (251)
T PF07091_consen 167 PP--------KEPADLALLL 178 (251)
T ss_dssp HT--------TSEESEEEEE
T ss_pred CC--------CCCcchhhHH
Confidence 33 5789999873
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.71 E-value=0.0038 Score=51.68 Aligned_cols=97 Identities=24% Similarity=0.233 Sum_probs=60.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
..++||=+|=.--. ++.++...+ ..+|+.+|+++..++..++..++.|+. |+.++.|..+-+|.-. .++||
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence 57899999955443 344444322 479999999999999999999999984 9999999998887532 58999
Q ss_pred EEEEcCC--ccchHHHHHHHHhcCCCCe
Q 025824 159 FIFVDAD--KDNYLNYHKRLIELVKVGG 184 (247)
Q Consensus 159 ~v~id~~--~~~~~~~l~~~~~~L~~gG 184 (247)
++|.|.+ .+...-++......|+.-|
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999998 4556667788888888766
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.67 E-value=0.00016 Score=62.21 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=64.4
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
+++..+. ..+...++|.-.|.|.-|..+++.+++ ++++++|.|+++++.|++.+... .+++.+++++..+....+.
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 3444443 345678999999999999999999985 99999999999999998877654 5789999999877655554
Q ss_pred hhhcCCCceeEEEEcCCcc
Q 025824 149 QDEKNHGSFDFIFVDADKD 167 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~~~ 167 (247)
... ....+|.|++|...+
T Consensus 87 ~~~-~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 87 ELN-GINKVDGILFDLGVS 104 (310)
T ss_dssp HTT-TTS-EEEEEEE-S--
T ss_pred Hcc-CCCccCEEEEccccC
Confidence 330 146899999997643
No 250
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.00042 Score=58.94 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=70.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+....+|.--|.|..+..+++.+++.++++++|.+|..++.|++.+...+ +++++++++..+....+...+ .+++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~--i~~v 97 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG--IGKV 97 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC--CCce
Confidence 344788999999999999999999988999999999999999999998765 689999999876655543332 5689
Q ss_pred eEEEEcCCc
Q 025824 158 DFIFVDADK 166 (247)
Q Consensus 158 D~v~id~~~ 166 (247)
|-|++|-..
T Consensus 98 DGiL~DLGV 106 (314)
T COG0275 98 DGILLDLGV 106 (314)
T ss_pred eEEEEeccC
Confidence 999998653
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.64 E-value=0.00081 Score=50.32 Aligned_cols=104 Identities=22% Similarity=0.259 Sum_probs=68.0
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh-hHHHHhhhcCC-CceeEE
Q 025824 83 TMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDLLIQDEKNH-GSFDFI 160 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~-l~~l~~~~~~~-~~fD~v 160 (247)
++|+|||+|..+ .++...+....++++|+++.++..++......+. ..+.+..++.... ++- .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999987 4444333224899999999988885544433111 1167777877652 221 12 379998
Q ss_pred EEcCCcc--chHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 161 FVDADKD--NYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 161 ~id~~~~--~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
....... .....+..+.+.++|+|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 3333211 146788889999999999988766543
No 252
>PHA01634 hypothetical protein
Probab=97.62 E-value=0.00026 Score=52.46 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+.++|+|||.+.|.|+++++..- ..+|+++|.++...+..+++++...+-++.... ++. +. .-++|
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~eW----~~------~Y~~~ 93 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-GEW----NG------EYEDV 93 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-ccc----cc------cCCCc
Confidence 467899999999999999998652 468999999999999999998876543333222 222 11 15799
Q ss_pred eEEEEcCC
Q 025824 158 DFIFVDAD 165 (247)
Q Consensus 158 D~v~id~~ 165 (247)
|+..+|+.
T Consensus 94 Di~~iDCe 101 (156)
T PHA01634 94 DIFVMDCE 101 (156)
T ss_pred ceEEEEcc
Confidence 99999987
No 253
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.60 E-value=0.00041 Score=66.36 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=71.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchH--------------HHHHHHHHH-----cC
Q 025824 79 NAKNTMEIGVYTGYSLLATALAL-------PD----DGKILAMDINRENY--------------ELGLPVIQK-----AG 128 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~-------~~----~~~v~~iD~~~~~~--------------~~a~~~~~~-----~g 128 (247)
+.-+|+|+|-|+|+..+...+.. ++ .-+++++|..|-.. ..+++.++. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999887666444 21 24899999866322 222333222 12
Q ss_pred C------CC--cEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCc--c----chHHHHHHHHhcCCCCeEEEE
Q 025824 129 V------AH--KIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADK--D----NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 129 ~------~~--~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~--~----~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+ .. ++++..||+.+.++.+ ...+|.+|.|+.. . -..++|..+.++++|||+++-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 2 12 3567889999988876 4679999999751 1 235789999999999999984
No 254
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.59 E-value=0.00011 Score=64.86 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=83.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.++..++++|||.|.....++..- .+++++++.++..+..+.......++.++..++.++..+-.. +++.|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~f 179 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTF 179 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------Ccccc
Confidence 455679999999999999988752 689999999999888888888878887777777777665433 36899
Q ss_pred eEEE-EcCC--ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIF-VDAD--KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~-id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|.+- +|.. .......+.++++.++|||+.++....
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 9884 4543 456678889999999999999986654
No 255
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.53 E-value=0.00084 Score=58.41 Aligned_cols=87 Identities=8% Similarity=0.084 Sum_probs=63.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..++||+||++|.+|..+++. +.+|++||..+- +.. +.. ..+|+...+|.....+. .+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l----~~~-L~~---~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPM----AQS-LMD---TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhc----CHh-hhC---CCCEEEEeccCcccCCC-------CCCC
Confidence 35679999999999999999975 679999996552 212 222 35799999998876552 3689
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCC
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVG 183 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~g 183 (247)
|++++|... ......+.+.+.|..|
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 999999863 2345556666666655
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.51 E-value=0.002 Score=54.29 Aligned_cols=167 Identities=13% Similarity=0.163 Sum_probs=87.6
Q ss_pred cccCCcHHHHHHHHHhcCCCCCcHHHHHHH-HHHHhCCCCccccCHHHHHHHHHHHh----hcCCCEEEEEcccccH--H
Q 025824 21 KSLLQSDALYQYILETSVYPREPESMKELR-ELTAKHPWNIMTTSADEGQFLNMLLK----LVNAKNTMEIGVYTGY--S 93 (247)
Q Consensus 21 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~vLEiG~g~G~--s 93 (247)
-+.+...++++|++.-+ ...+.-+++- +.....+. ........-.||...++ ...-...||||||.=. .
T Consensus 9 ~~~P~~ARvYDy~LGGk---dnf~vDR~~a~~~~~~~P~-~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~n 84 (267)
T PF04672_consen 9 TDRPSPARVYDYLLGGK---DNFAVDREAAERLLAAAPE-IREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGN 84 (267)
T ss_dssp TTS--HHHHHHHHCT-S---S--HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-
T ss_pred CCCCcHHHHHHHHhCCc---cCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCC
Confidence 34567789999997521 1122223332 22222222 11122333445544433 3356789999999433 5
Q ss_pred HHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH---hhh--cCCCceeEEEEcC----
Q 025824 94 LLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI---QDE--KNHGSFDFIFVDA---- 164 (247)
Q Consensus 94 t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~---~~~--~~~~~fD~v~id~---- 164 (247)
+-.+++...++++|+-+|.+|-.+..++..+....- .+..++.+|..+.-.-|. ..+ .-..+.=++++..
T Consensus 85 vHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v 163 (267)
T PF04672_consen 85 VHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV 163 (267)
T ss_dssp HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS
T ss_pred HhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC
Confidence 567777766699999999999999999998876432 348999999876322121 000 0123333444322
Q ss_pred -CccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 165 -DKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 165 -~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.......+..+...|.||.+|++....
T Consensus 164 ~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 164 PDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp -CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 2356678899999999999999987554
No 257
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.51 E-value=0.00038 Score=57.84 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=75.5
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
..||.- | ...++..+-...+...|.|+|||-+-.+. . ..-+|+++|+.+. +-++
T Consensus 161 ~kWP~n---P-ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~----------------~~~V 214 (325)
T KOG3045|consen 161 KKWPEN---P-LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAV----------------NERV 214 (325)
T ss_pred HhCCCC---h-HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeecC----------------CCce
Confidence 457643 2 45566666666666789999999887654 2 2358999999753 2356
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+..|.... |- .+++.|+++.... ..+...++.++.+.|++||.+.+..+-
T Consensus 215 ~~cDm~~v-Pl------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 215 IACDMRNV-PL------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred eeccccCC-cC------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 66777663 32 2789998876544 578899999999999999999987764
No 258
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=7.7e-05 Score=67.01 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=95.6
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhh
Q 025824 71 LNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 71 l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~ 150 (247)
........++.+|||.=+++|.=++..+..++.-.+|++-|.++..++..++|++..+..+.++..++|+.-.+-....
T Consensus 101 ~~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~- 179 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM- 179 (525)
T ss_pred cchhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc-
Confidence 3444555677899999999999999999999856799999999999999999999999988999999999765433210
Q ss_pred hcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 151 EKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
....||+|-+|..- ....|++.+.+.++.||++.+.-+
T Consensus 180 --~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 180 --VAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred --cccccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEec
Confidence 13789999998763 346789999999999999998544
No 259
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00034 Score=55.82 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=58.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+.++|||+|+|+|..++.-+.+- ...|++.|++|-.....+-|.+.+|+ .|.+...|... . +..|
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~--------~~~~ 143 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--S--------PPAF 143 (218)
T ss_pred cccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--C--------Ccce
Confidence 456899999999999988777653 36899999999988888999988886 47888777653 1 5789
Q ss_pred eEEEEc
Q 025824 158 DFIFVD 163 (247)
Q Consensus 158 D~v~id 163 (247)
|+++..
T Consensus 144 Dl~Lag 149 (218)
T COG3897 144 DLLLAG 149 (218)
T ss_pred eEEEee
Confidence 999864
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.46 E-value=0.00013 Score=60.26 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC--C------CCcEEEEEecc
Q 025824 71 LNMLLKLVNA--KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG--V------AHKIDFREGPA 140 (247)
Q Consensus 71 l~~l~~~~~~--~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~------~~~i~~~~gd~ 140 (247)
|...+...+. .+|||.-+|.|.-++.++.. +++|+++|.+|-.....+.-++++. . ..+|+++++|+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4434443333 38999999999999999864 6899999999988777665554321 1 14899999999
Q ss_pred hhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 141 LPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 141 ~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
.+++.. ..++||+|.+|..
T Consensus 142 ~~~L~~------~~~s~DVVY~DPM 160 (234)
T PF04445_consen 142 LEYLRQ------PDNSFDVVYFDPM 160 (234)
T ss_dssp CCHCCC------HSS--SEEEE--S
T ss_pred HHHHhh------cCCCCCEEEECCC
Confidence 998872 2689999999975
No 261
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0018 Score=56.55 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=81.3
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHH-hh
Q 025824 75 LKLVNAKNTMEIGVYTGYSLLATALALP---DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLI-QD 150 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~G~st~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~-~~ 150 (247)
....+..+|||.+...|..|+.|.+++- ..+.|++=|.++..+......+..... .++.+...++... +... ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKD 228 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-ccccccc
Confidence 3456778999999999999999998864 246899999999998888777765543 3444444444322 2110 00
Q ss_pred h--cCCCceeEEEEcCCccc--------------------------hHHHHHHHHhcCCCCeEEEEecccccccccCCCC
Q 025824 151 E--KNHGSFDFIFVDADKDN--------------------------YLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPD 202 (247)
Q Consensus 151 ~--~~~~~fD~v~id~~~~~--------------------------~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~ 202 (247)
+ .....||-|++|.+++. -..++...+++|++||.+| |+.+-..|.+
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV-----YSTCSLnpie 303 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV-----YSTCSLNPIE 303 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE-----EeccCCCchh
Confidence 0 02358999999865211 0235556678999999999 4555555655
Q ss_pred C
Q 025824 203 A 203 (247)
Q Consensus 203 ~ 203 (247)
+
T Consensus 304 N 304 (375)
T KOG2198|consen 304 N 304 (375)
T ss_pred h
Confidence 3
No 262
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0022 Score=51.48 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=75.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+||=+|..+|.+..+++...+ .+.++++|.+++.....-...++ ..++--+.+|+..--. ... --+..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~-Y~~---~Ve~V 146 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEK-YRH---LVEKV 146 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHH-hhh---hcccc
Confidence 4568999999999999999999988 89999999999876544444433 3567788899864221 110 14679
Q ss_pred eEEEEcCCccchHH-HHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLN-YHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~-~l~~~~~~L~~gG~lv~ 188 (247)
|+||.|....+..+ +...+...|++||.+++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 99999987554444 44556678999995554
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.34 E-value=0.0002 Score=64.75 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=55.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
+.+||+|||+|..+.+|.+. +....++-.+...-.. -++..+-|+..-+.+. + ..-||- ..+.||+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~q-vqfaleRGvpa~~~~~-~--s~rLPf------p~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQ-VQFALERGVPAMIGVL-G--SQRLPF------PSNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchh-hhhhhhcCcchhhhhh-c--cccccC------Cccchhhh
Confidence 46799999999999999864 4444455444332111 1222234543222111 1 223333 36899999
Q ss_pred EEcCC----ccchHHHHHHHHhcCCCCeEEEEe
Q 025824 161 FVDAD----KDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 161 ~id~~----~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+..- ...---++-++-++|+|||+++..
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred hcccccccchhcccceeehhhhhhccCceEEec
Confidence 86532 111123555666999999999853
No 264
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00039 Score=62.67 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=86.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+..+|-+|-|.|.....+-..+| ..+++++|++|++++.|++++....- .+..++..|+.+++.+..+..-.+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45688888888998888887787 79999999999999999999875432 36778888999988887653223578999
Q ss_pred EEEcCCccc------------hHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 160 IFVDADKDN------------YLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 160 v~id~~~~~------------~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
+++|-+-.. ...++......|.|.|+++++-+...
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 999865111 12355556679999999998766543
No 265
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0028 Score=50.34 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=65.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhh--hHHHHhhhcCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPV--LDLLIQDEKNH 154 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~--l~~l~~~~~~~ 154 (247)
.+..+|||+||..|.++...-+...|++.|.+||+-+- ... .-++++.+ |..+. ...+.... ++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~l-p~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEAL-PN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHhC-CC
Confidence 35789999999999999888888767999999999543 111 22455555 43321 11111110 35
Q ss_pred CceeEEEEcCCc-------cchHHHHHHH-------HhcCCCCeEEEEecccccc
Q 025824 155 GSFDFIFVDADK-------DNYLNYHKRL-------IELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 155 ~~fD~v~id~~~-------~~~~~~l~~~-------~~~L~~gG~lv~d~~~~~g 195 (247)
.+.|+|+.|..+ .+.....+.| ...++|+|.+++. +|.|
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 789999988541 1222333444 3678899999986 5655
No 266
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00022 Score=58.28 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
-+.++||||+.|+....+.... -.+++-+|.+..+++.++..-. .++ .+...++|- ++++ + .++++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ld-f-----~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLD-F-----KENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccc-c-----cccchhh
Confidence 4679999999999998877542 3689999999999988765322 222 345566765 4555 3 3789999
Q ss_pred EEEc---CCccchHHHHHHHHhcCCCCeEEEE
Q 025824 160 IFVD---ADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 160 v~id---~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+.. ++..+.+..+..|...|||+|+++.
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 9865 3456778888999999999999985
No 267
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0019 Score=50.04 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=66.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC--CcEEEEEecchhhhHHHHhhhcCC
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
..+++|||+|.| +|..++.+|...+ ...|...|-+++.++..++....+-.+ .++.++.-..... ...+ ..
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~---eq 101 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQ---EQ 101 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHH---hh
Confidence 346789999987 5666677777665 789999999999888877766543211 1222221111111 1111 14
Q ss_pred CceeEEEE-cCC--ccchHHHHHHHHhcCCCCeEEE
Q 025824 155 GSFDFIFV-DAD--KDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 155 ~~fD~v~i-d~~--~~~~~~~l~~~~~~L~~gG~lv 187 (247)
..||+|+. |+- .+......+.+..+|+|.|.-+
T Consensus 102 ~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 102 HTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred CcccEEEeccchhHHHHHHHHHHHHHHHhCccccee
Confidence 68999875 222 4556677888889999988754
No 268
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0009 Score=55.06 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=85.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~~~~~~ 156 (247)
.+.+.+||||+-||..|-.+++.- ..+|+++|.....+..- + ....|+..+.. |+...-+.-. .+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~tN~r~l~~~~~-----~~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERTNVRYLTPEDF-----TEK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecCChhhCCHHHc-----ccC
Confidence 467899999999999999998762 36999999987644321 1 12346666543 4443322221 357
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe---------ccc-ccccccCCCCCcchhhhchHHHHHHHHHHHHHcC
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD---------NTL-WNGSVVAPPDAPLRKYVRYYRDFVLELNKALAAD 226 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d---------~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (247)
.|++++|..--.....+..+..+++|++.++.- +.. -.|-+.+| ......+..+..+..+.
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~---------~~~~~v~~~i~~~~~~~ 215 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDP---------KLHAEVLSKIENFAKEL 215 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCc---------chHHHHHHHHHHHHhhc
Confidence 899999988667778888899999999887741 111 12222233 24456677777776665
Q ss_pred CCeeE
Q 025824 227 PRIEI 231 (247)
Q Consensus 227 ~~~~~ 231 (247)
+|..
T Consensus 216 -g~~~ 219 (245)
T COG1189 216 -GFQV 219 (245)
T ss_pred -CcEE
Confidence 5543
No 269
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.04 E-value=0.0069 Score=55.89 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=93.8
Q ss_pred cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE
Q 025824 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPD---DGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~ 137 (247)
...+....+++..++...+..+|.|-.||+|...+...+.+.. ...+++.|+++.....|+-|+--.|+...+....
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3345677788887777656678999999999988877766642 3779999999999999999999888754466777
Q ss_pred ecchhhhHHHHhhhcCCCceeEEEEcCC----------------------------ccchHHHHHHHHhcCCCCe---EE
Q 025824 138 GPALPVLDLLIQDEKNHGSFDFIFVDAD----------------------------KDNYLNYHKRLIELVKVGG---VI 186 (247)
Q Consensus 138 gd~~~~l~~l~~~~~~~~~fD~v~id~~----------------------------~~~~~~~l~~~~~~L~~gG---~l 186 (247)
+|......... +...+.||+|+...+ ......++..+...|+||| ++
T Consensus 248 ~dtl~~~~~~~--~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 248 GDTLSNPKHDD--KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccCCcccc--cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 77654322110 002367998875432 1112567788889999865 56
Q ss_pred EEeccccccc
Q 025824 187 GYDNTLWNGS 196 (247)
Q Consensus 187 v~d~~~~~g~ 196 (247)
+.+++++.|.
T Consensus 326 l~~gvlfr~~ 335 (489)
T COG0286 326 LPDGVLFRGG 335 (489)
T ss_pred ecCCcCcCCC
Confidence 6677777653
No 270
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0016 Score=57.94 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=51.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|||||+|+|..+...+++.. -.|+++|....+.+.|++...+.|.+++|+++...+.+
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 579999999999988887753 47999999999999999999999999999998765544
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.00 E-value=0.0046 Score=53.96 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=68.5
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
...+.++|+-+|+| .|..++.+|+++. .+|+++|.+++..+.|++. |. -.++.....+..+.+ .
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~ 227 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------K 227 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------H
Confidence 34556788887776 5557888998874 8999999999988887764 43 233333323344444 2
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+.||+|+.-.. ...++...+.|++||.+++-...
T Consensus 228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 35999976554 55677888899999999975544
No 272
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.97 E-value=0.0006 Score=57.29 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC---------------------------C
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA---------------------------H 131 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---------------------------~ 131 (247)
++.++||||||.-.. .+..+.+.--+|+..|..+...+..++.++..+.- .
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456899999886332 33344332348999999999888777776653310 1
Q ss_pred cE-EEEEecchhhhHHHHhhhcCCCceeEEEEcC-------CccchHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 132 KI-DFREGPALPVLDLLIQDEKNHGSFDFIFVDA-------DKDNYLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 132 ~i-~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~-------~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
.| .++..|..+.-+ +........+||+|+.-. +...|...++.+.++|||||.+++-.++-.
T Consensus 134 ~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 13 244555543211 100000023599987542 356788889999999999999998777643
No 273
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.83 E-value=0.0039 Score=51.45 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=73.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+..+||=+|.++|.+..+.+....+.+-|+++|.++.. .|+.+.-+.-..+|--+..|+..--.. .- .-.-.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rs---GRdL~nmAkkRtNiiPIiEDArhP~KY-Rm---lVgmV 227 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRS---GRDLINMAKKRTNIIPIIEDARHPAKY-RM---LVGMV 227 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccc---hHHHHHHhhccCCceeeeccCCCchhe-ee---eeeeE
Confidence 456799999999999999999999889999999999874 333333333335677777888542111 00 13578
Q ss_pred eEEEEcCCccchHHHHH-HHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHK-RLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~-~~~~~L~~gG~lv~ 188 (247)
|+||.|-...+...++. .+.-.|++||-+++
T Consensus 228 DvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 228 DVIFADVAQPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence 99999987555444433 33458999999886
No 274
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0087 Score=45.74 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=83.3
Q ss_pred CCCCccccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEE
Q 025824 56 HPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135 (247)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 135 (247)
..+|...-..++-+-+-.++...+..+.+|+|+|-|...+..++.- --.-+++|++|-.+.+++-..-++|...++.|
T Consensus 49 ~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf 126 (199)
T KOG4058|consen 49 LCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRF 126 (199)
T ss_pred ecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhh
Confidence 3454443333333333344455566789999999999888777642 24678999999999999888778898888999
Q ss_pred EEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 136 REGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 136 ~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..-|...+ . -..|..+.+-+..+-.+..-.++..-+..|..++.
T Consensus 127 ~RkdlwK~--d-------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 127 RRKDLWKV--D-------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhhhhhhc--c-------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 88887654 1 24566666655544455555666667778877774
No 275
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.013 Score=50.43 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHH---------hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcE
Q 025824 64 SADEGQFLNMLL---------KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKI 133 (247)
Q Consensus 64 ~~~~~~~l~~l~---------~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i 133 (247)
+-+.+.+++.|. ......+||-+|+| .|..+...|+++. ..+|+.+|+++..++.|++ .|...-.
T Consensus 145 s~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 145 SFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred chhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 345555555432 23456799999999 6888888999987 7899999999999999988 3542211
Q ss_pred EEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 134 DFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 134 ~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..-..+..+.+.+..+.......+|+.|-.. .....++.....+++||++++-.
T Consensus 220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 220 PSSHKSSPQELAELVEKALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eccccccHHHHHHHHHhhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence 1122222233334333332235699887432 23455677788899999977644
No 276
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0038 Score=49.88 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=64.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH------HHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 74 LLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENY------ELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~------~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
+....+..+|+|+-.|.|++|..++..+.+.++|+++-..+... ...+....+... .+++.+-.+.....+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~-- 119 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGA-- 119 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCC--
Confidence 34456778999999999999999999998889999987655311 111111111111 233333322221111
Q ss_pred HhhhcCCCceeEEEEc---CC-------ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 148 IQDEKNHGSFDFIFVD---AD-------KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id---~~-------~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
....|+++.. ++ ..........+.+.|||||++++.|-
T Consensus 120 ------pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 ------PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ------CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 2345555431 11 22334567778899999999887553
No 277
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.61 E-value=0.024 Score=43.33 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=60.5
Q ss_pred HHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHH
Q 025824 70 FLNMLLKLVN--AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLL 147 (247)
Q Consensus 70 ~l~~l~~~~~--~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l 147 (247)
.|.+.+.... +.-|||+|-|.|..=-+|-+.+| +-+|+.+|..-.... ....+.=.++.||+.+.++.+
T Consensus 17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~~ 87 (160)
T PF12692_consen 17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPAL 87 (160)
T ss_dssp HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHHH
Confidence 3444444333 35799999999999889999998 889999998533111 111233468899999999883
Q ss_pred HhhhcCCCceeEEEEcCCc---cchHHHH----HHHHhcCCCCeEEEEecccc
Q 025824 148 IQDEKNHGSFDFIFVDADK---DNYLNYH----KRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~---~~~~~~l----~~~~~~L~~gG~lv~d~~~~ 193 (247)
..- ..+.-++..|..- +.-.... ..+.++|.|||+++.+.-+.
T Consensus 88 ~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 88 ARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred Hhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 222 3566677777542 2111122 23347999999999876654
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.43 E-value=0.015 Score=51.40 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=68.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhhcCCCc
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~~~~~~ 156 (247)
+..+|+-+||| .|..++.+++..+ ..+|+.+|.+++.++.|++.... +.+..... +.......+. ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence 34489999998 4777777888776 68999999999999999885432 11111112 2222222221 1236
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
+|++|--.. ....+..+...++|||.+++-.+.
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 999985443 566788999999999999986554
No 279
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.02 Score=47.03 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC----C----CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh--hhHHHH
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPD----D----GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDLLI 148 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~----~----~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~--~l~~l~ 148 (247)
..++++|++...|.++..+++.+-. . .+|++||+-+- +.++ -|.-+++|+.. .+...+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHH
Confidence 4679999999999999999887632 1 24999999764 2332 35556777643 222222
Q ss_pred hhhcCCCceeEEEEcCCc-----cchH---------HHHHHHHhcCCCCeEEEEe
Q 025824 149 QDEKNHGSFDFIFVDADK-----DNYL---------NYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~~-----~~~~---------~~l~~~~~~L~~gG~lv~d 189 (247)
..- ..++.|+|++|+.+ +... ..|......|+|||.+|..
T Consensus 109 ~hf-ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHF-GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHh-CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 211 35799999999762 1222 2333334789999999853
No 280
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0037 Score=54.26 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=64.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..|++|||+|.|.|.....+-..+|.--.++.+|.++..-++.....+..+. ....-..+|..+..-.+. ....|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~y 186 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADLY 186 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----cccee
Confidence 4688999999999987666666677546788889888655544443333322 111112222221111110 13578
Q ss_pred eEEEEcC------CccchHHHHHHHHhcCCCCeEEEEe
Q 025824 158 DFIFVDA------DKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 158 D~v~id~------~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+++++-. .......+++.++.++.|||.||+-
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 8877532 2233445888999999999999963
No 281
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.40 E-value=0.0025 Score=54.12 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=72.2
Q ss_pred CCEEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVYTGYSLL-ATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
...|+|+-.|.||.|+ .+..+ . ...|+++|.+|..++..+++++.+++.++..++.||....-+ ....|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad 264 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD 264 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence 4789999999999999 44443 2 468999999999999999999999988888888898765433 45677
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCC-Ce-EEEEeccc
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKV-GG-VIGYDNTL 192 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~-gG-~lv~d~~~ 192 (247)
-|.+.-- ...++... +.|+| || ++-++...
T Consensus 265 rVnLGLlPSse~~W~~A~----k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAI----KALKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHH----HHhhhcCCcEEEEeccc
Confidence 7776543 34444333 34454 55 67776543
No 282
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.38 E-value=0.013 Score=50.75 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=72.0
Q ss_pred cccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHH-------HHHHHHHHcCCCC-c
Q 025824 61 MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYE-------LGLPVIQKAGVAH-K 132 (247)
Q Consensus 61 ~~~~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~g~~~-~ 132 (247)
-+..++..-++..++...+++.|.|--.|||...+..|.- ++.|+|.|++-.++. ..+.|+++.|.++ -
T Consensus 190 TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f 266 (421)
T KOG2671|consen 190 TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF 266 (421)
T ss_pred cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence 3445777777788888888899999999999877665543 689999999987765 3578999999654 3
Q ss_pred EEEEEecchhhhHHHHhhhcCCCceeEEEEcCC
Q 025824 133 IDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 133 i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
+.++.+|...- .+. ....||.|++|.+
T Consensus 267 ldvl~~D~sn~--~~r----sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 267 LDVLTADFSNP--PLR----SNLKFDAIVCDPP 293 (421)
T ss_pred hheeeecccCc--chh----hcceeeEEEeCCC
Confidence 67778887542 221 2468999999965
No 283
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.06 E-value=0.077 Score=43.23 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=63.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHHHHHHHHHcC-----------------------------
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDD-GKILAMDINRENYELGLPVIQKAG----------------------------- 128 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~g----------------------------- 128 (247)
.|-++.|-+||.||....+.--.++. ..|++-|++++.++.|++|+.-..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 46689999999999877766544422 589999999999999988775221
Q ss_pred ------------CCCcEEEEEecchhhh--HHHHhhhcCCCceeEEEEcCCc------------cchHHHHHHHHhcCCC
Q 025824 129 ------------VAHKIDFREGPALPVL--DLLIQDEKNHGSFDFIFVDADK------------DNYLNYHKRLIELVKV 182 (247)
Q Consensus 129 ------------~~~~i~~~~gd~~~~l--~~l~~~~~~~~~fD~v~id~~~------------~~~~~~l~~~~~~L~~ 182 (247)
-.....+...|..+.- ..+. .....|+|+.|-+. ......++.+.+.|-+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~----~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD----AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH----TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc----cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 1122556666666521 1221 13446999998541 1245788999999977
Q ss_pred CeEEEEe
Q 025824 183 GGVIGYD 189 (247)
Q Consensus 183 gG~lv~d 189 (247)
+++|++.
T Consensus 207 ~sVV~v~ 213 (246)
T PF11599_consen 207 RSVVAVS 213 (246)
T ss_dssp T-EEEEE
T ss_pred CcEEEEe
Confidence 7888773
No 284
>PRK13699 putative methylase; Provisional
Probab=96.05 E-value=0.0094 Score=49.40 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=40.4
Q ss_pred EEEEEecchhhhHHHHhhhcCCCceeEEEEcCCcc------------------chHHHHHHHHhcCCCCeEEEE
Q 025824 133 IDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKD------------------NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 133 i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~------------------~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+++++||+.+.+..+ +++++|+||.|.+.. -....+.++.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468899999998887 478999999997631 123566788899999999875
No 285
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.97 E-value=0.046 Score=45.69 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=59.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-----HcCCCCcEEEEE---ecchhhhHHHHhh
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQ-----KAGVAHKIDFRE---GPALPVLDLLIQD 150 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-----~~g~~~~i~~~~---gd~~~~l~~l~~~ 150 (247)
+..+|||+|+|+|..++.++... +..++..|...... ..+.+.. ...+...+.+.. +++.+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~-~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVE-NLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHH-HHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 46789999999998888877654 57888888755432 2222222 222222344433 333322221
Q ss_pred hcCCCc-eeEEEEcCC---ccchHHHHHHHHhcCCCCeEEEE
Q 025824 151 EKNHGS-FDFIFVDAD---KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 151 ~~~~~~-fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
... +|+|+..-. .+.+...+..+..+|..++++.+
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 233 898885322 45566777777788888885554
No 286
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.97 E-value=0.014 Score=43.30 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=60.4
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccc
Q 025824 89 YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDN 168 (247)
Q Consensus 89 g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~ 168 (247)
|.|..++.+++..+ ++|+++|.+++..+.+++ .|.. .++..+..+..+.+.+-. ....+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHT-TTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc---cccccccccccccccccc-ccccceEEEEecC---
Confidence 46888999999875 999999999987666544 5531 233333222333332211 1247998875443
Q ss_pred hHHHHHHHHhcCCCCeEEEEeccc
Q 025824 169 YLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 169 ~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
....++.....|+++|.+++-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 356788899999999999975543
No 287
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.93 E-value=0.034 Score=40.50 Aligned_cols=88 Identities=18% Similarity=0.074 Sum_probs=59.2
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCCceeEEEEcC
Q 025824 88 VYTGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHGSFDFIFVDA 164 (247)
Q Consensus 88 ~g~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~~fD~v~id~ 164 (247)
||.|..+..+++.+..++ +++.+|.+++.++.+++ .| +.++.||+.+. +... .-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERA-----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhc-----CccccCEEEEcc
Confidence 567888898888876556 89999999997665543 33 57889998753 3332 246899998887
Q ss_pred CccchHHHHHHHHhcCCCCeEEEE
Q 025824 165 DKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 165 ~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+.....-..-...+.+.|...+++
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 644433344445567778777775
No 288
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.91 E-value=0.028 Score=51.24 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..-++|+|..+|.|..+..|.+. .|+.+-.-|..-.-.-..+-.-|+ |-+ ..|..|.++.. ..+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL---IG~-yhDWCE~fsTY------PRTY 428 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL---IGV-YHDWCEAFSTY------PRTY 428 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc---chh-ccchhhccCCC------Ccch
Confidence 34568999999999998888642 255444444321112222333344 222 23455555543 6899
Q ss_pred eEEEEcCC------ccchHHHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHHcCCCeeE
Q 025824 158 DFIFVDAD------KDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
Q Consensus 158 D~v~id~~------~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 231 (247)
|+|..++- .-.....+-++=+.|+|||.+++.|.. .....++ .+...=++++
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~------------------~vl~~v~----~i~~~lrW~~ 486 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV------------------DVLEKVK----KIAKSLRWEV 486 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH------------------HHHHHHH----HHHHhCcceE
Confidence 99998754 223345566666999999999986532 1112222 2445556777
Q ss_pred EeeecC------CeeEEEEE
Q 025824 232 CMLPVG------DGVTICRR 245 (247)
Q Consensus 232 ~~lp~~------dG~~i~~k 245 (247)
.+.-.. .++++++|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 665433 56777776
No 289
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.88 E-value=0.048 Score=46.52 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=62.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
+|+|+.||.|..+.-+..+- -..+.++|+++..++..+.|+... ++.+|..+....-. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence 68999999999988777641 236789999999888877776421 55677766543210 25799999
Q ss_pred EcCCccc-----------------hHHHHHHHHhcCCCCeEEEEeccc
Q 025824 162 VDADKDN-----------------YLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 162 id~~~~~-----------------~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
.+.++.. +..++ .+.+.++|. ++++.||-
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK-YFLLENVK 113 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC-EEEEEcCc
Confidence 8765211 12233 333556776 67788873
No 290
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.78 E-value=0.011 Score=44.17 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=38.7
Q ss_pred cEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC--cc----chHHHHHHHHhcCCCCeEEEE
Q 025824 132 KIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD--KD----NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 132 ~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~--~~----~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++++..||+.+.++.+ ...+|+||.|+. .. -..++|+.+.++++|||++..
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4677899999999887 589999999975 11 236799999999999999985
No 291
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.032 Score=51.08 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=72.9
Q ss_pred CEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 81 KNTMEIGVYTGYSLLATALA---LPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..|+-+|.|-|-..-...++ ..+..+++++|.+|.++-..+. .......++|+++.+|..+.-+. .++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq~ 440 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQA 440 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhhc
Confidence 45788999999876554433 3356799999999997765443 44445668999999999876431 3678
Q ss_pred eEEEEc-----CCccchHHHHHHHHhcCCCCeEEE
Q 025824 158 DFIFVD-----ADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 158 D~v~id-----~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+++.- ++-+--++.++-+.+.|||+|+-|
T Consensus 441 DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 441 DIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 988531 334556889999999999999887
No 292
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.017 Score=50.79 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
+...++...++.+|+|+.|..|..|.+++..++..++++++|.+.+.++.-++.+..+|.+ .++...+|+..+ +...
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~- 280 (413)
T KOG2360|consen 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE- 280 (413)
T ss_pred chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc-
Confidence 4455556667789999999999999999999887899999999999999999999999984 577778888764 2110
Q ss_pred hhcCCCceeEEEEcCC
Q 025824 150 DEKNHGSFDFIFVDAD 165 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~ 165 (247)
.-...-.|++|+.
T Consensus 281 ---~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 281 ---KFRDVTYILVDPS 293 (413)
T ss_pred ---cccceeEEEeCCC
Confidence 1245667888765
No 293
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.67 E-value=0.06 Score=44.99 Aligned_cols=114 Identities=16% Similarity=0.294 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
+....++..+...+.... +..+.|.-.+. +..+++.-+++.+|+.|.-.+..++++.. ..++++++.|+.+.+
T Consensus 44 ~~l~~yl~~v~~~n~~~~---l~~YPGSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 44 PALQPYLDAVRALNPDGE---LRFYPGSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL 116 (245)
T ss_dssp GGGHHHHHHHHHHSSSSS-----EEE-HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhccCCC---cCcCCCCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence 444556666555444333 55666754433 34456678999999999988888877765 258999999999988
Q ss_pred HHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCC--CCeEEEE
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVK--VGGVIGY 188 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~--~gG~lv~ 188 (247)
..+.+. ...=-+|+||.+ +..|....+.+.+.++ +.|++++
T Consensus 117 ~allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 117 KALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 777542 345679999987 5666666666655444 5676653
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=95.62 E-value=0.022 Score=48.80 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=40.9
Q ss_pred cEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCcc---c------------h----HHHHHHHHhcCCCCeEEEEe
Q 025824 132 KIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKD---N------------Y----LNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 132 ~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~---~------------~----~~~l~~~~~~L~~gG~lv~d 189 (247)
..+++++|+.+.+..+ .+++||+||+|.+.. . + ...+..+.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKI-----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhc-----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999988766 367999999997621 0 1 24677888999999999863
No 295
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.58 E-value=0.052 Score=44.31 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=53.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh-hHHHHhhhcCCCceeE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDLLIQDEKNHGSFDF 159 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~-l~~l~~~~~~~~~fD~ 159 (247)
-++|||||-+......-.. -..|+.||+++.. -.+.+.|..+. +|.. +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence 5899999886654443222 2469999999851 23556666654 3322 2578999
Q ss_pred EEEcC------CccchHHHHHHHHhcCCCCeE
Q 025824 160 IFVDA------DKDNYLNYHKRLIELVKVGGV 185 (247)
Q Consensus 160 v~id~------~~~~~~~~l~~~~~~L~~gG~ 185 (247)
|.+.- .....-+.+..+.+.|+|+|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 97642 234455788889999999999
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.27 Score=41.08 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=82.2
Q ss_pred CHHHHHHHHHH----HhhcCCCEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE
Q 025824 64 SADEGQFLNML----LKLVNAKNTMEIGVYTGYSLLATALALPDD---GKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 64 ~~~~~~~l~~l----~~~~~~~~vLEiG~g~G~st~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
......++... +...++...+|+|+|+-.-|..|..++.+. .+.+.||++...+...-+.+...-..-.+.-+
T Consensus 59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l 138 (321)
T COG4301 59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNAL 138 (321)
T ss_pred chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeeh
Confidence 34555666543 445678899999999999999898887632 58999999999886544444432221235567
Q ss_pred EecchhhhHHHHhhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 137 EGPALPVLDLLIQDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 137 ~gd~~~~l~~l~~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
++|....+..+.. .+.-=++|+... +..-..++..+...++||-++++
T Consensus 139 ~~~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 139 CGDYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hhhHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 7887766665521 233345565543 44556788999999999998876
No 297
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.47 E-value=0.17 Score=46.87 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=66.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec--------c----hhhh
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP--------A----LPVL 144 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd--------~----~~~l 144 (247)
.++.+|+-+|+| .|..++..++.++ ++|+++|.+++..+.+++ .|.. .+.+-..+ + .+..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence 367899999998 5667778888874 589999999997777665 4531 11111100 0 0111
Q ss_pred H---HHHhhhcCCCceeEEEEcCCccc--hHHH-HHHHHhcCCCCeEEEEecccccc
Q 025824 145 D---LLIQDEKNHGSFDFIFVDADKDN--YLNY-HKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 145 ~---~l~~~~~~~~~fD~v~id~~~~~--~~~~-l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
. .+..+ ....+|+||-...... .+.. .+.+.+.+||||+|+.-.+...|
T Consensus 236 ~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 1 11000 0146999986554221 2344 48899999999998865443344
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.43 E-value=0.097 Score=46.67 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=66.5
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec-chhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP-ALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd-~~~~l~~l~~~~~ 152 (247)
....+..+||.+|+|. |..++.+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+.
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---- 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---- 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----
Confidence 3445667899999987 888888998874 347999999998887777642 22 112222221 222222221
Q ss_pred CCCceeEEEEcCCc------------------cchHHHHHHHHhcCCCCeEEEEec
Q 025824 153 NHGSFDFIFVDADK------------------DNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 153 ~~~~fD~v~id~~~------------------~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
....+|+||--... .+....++.+.+.++++|.++.-.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 13469988642211 112456788889999999998643
No 299
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.14 Score=44.13 Aligned_cols=115 Identities=19% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCC-------CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcC-CC--------
Q 025824 67 EGQFLNMLLKLVNA-------KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAG-VA-------- 130 (247)
Q Consensus 67 ~~~~l~~l~~~~~~-------~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~-------- 130 (247)
...++..+....++ .+||--|||.|..+..|+..-. ++-+=|.+--|+-.. .++-.+. .+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S-~FiLN~~~~~nq~~IYPf 206 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICS-SFILNYCKQENQFTIYPF 206 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHH-HHHHHhhccCCcEEEEee
Confidence 34455555555443 4799999999999999987533 333335544443222 2221111 11
Q ss_pred -------------------------------CcEEEEEecchhhhHHHHhhhcCCCceeEE----EEcCCccchHHHHHH
Q 025824 131 -------------------------------HKIDFREGPALPVLDLLIQDEKNHGSFDFI----FVDADKDNYLNYHKR 175 (247)
Q Consensus 131 -------------------------------~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v----~id~~~~~~~~~l~~ 175 (247)
....+-.||..+..+.- + ..+.||+| |||.. .+..++++.
T Consensus 207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s--~--~~~~~d~VvTcfFIDTa-~NileYi~t 281 (369)
T KOG2798|consen 207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS--S--GAGSYDVVVTCFFIDTA-HNILEYIDT 281 (369)
T ss_pred eeccccccccccccccccCccccccccCCCCCCccccccceeEEecCc--C--CCCccceEEEEEEeech-HHHHHHHHH
Confidence 12233345555443321 0 12468987 45654 578899999
Q ss_pred HHhcCCCCeEEEEec
Q 025824 176 LIELVKVGGVIGYDN 190 (247)
Q Consensus 176 ~~~~L~~gG~lv~d~ 190 (247)
+.+.|+|||+.|--.
T Consensus 282 I~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 282 IYKILKPGGVWINLG 296 (369)
T ss_pred HHHhccCCcEEEecc
Confidence 999999999988433
No 300
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.20 E-value=0.13 Score=44.94 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+.++||-+|+| .|..++.+++... ..+|+++|.+++..+.+++ .|...-+.....+ +..+.. ..+.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~----~~~~~~---~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDD----LDHYKA---EKGYF 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCccc----HHHHhc---cCCCC
Confidence 46788888864 3445556666653 2379999999987776654 4542111111112 122211 12459
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
|+|| |+.- ....++.+.+.|++||.++.-.
T Consensus 237 D~vi-d~~G--~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 237 DVSF-EVSG--HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CEEE-ECCC--CHHHHHHHHHHhhcCCEEEEEc
Confidence 9886 4432 2345677888999999998754
No 301
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.14 E-value=0.17 Score=47.30 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=64.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh-----hhHHHHhhh
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-----VLDLLIQDE 151 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~-----~l~~l~~~~ 151 (247)
+.+...|||+||..|.+....++.+|.++-|+++|+-|-. .+ .++.-++.|+.. -+....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~-~~c~t~v~dIttd~cr~~l~k~l--- 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PI-PNCDTLVEDITTDECRSKLRKIL--- 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cC-CccchhhhhhhHHHHHHHHHHHH---
Confidence 4567789999999999998888999988999999998841 11 233333444322 111211
Q ss_pred cCCCceeEEEEcCCccc--------------hHHHHHHHHhcCCCCeEEEEeccc
Q 025824 152 KNHGSFDFIFVDADKDN--------------YLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~--------------~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
...+.|+|+.|+.+.- ....++.+...|+.||.++ +.++
T Consensus 107 -~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvf 159 (780)
T KOG1098|consen 107 -KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVF 159 (780)
T ss_pred -HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-cccc
Confidence 1356799999976311 1233445557899999954 4444
No 302
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.92 E-value=0.019 Score=48.63 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
|...+|+... .....++|+|||.|-.+.. .+.+.++++|++...+..+++ .| ...+..+|+....
T Consensus 34 p~v~qfl~~~---~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~----~~---~~~~~~ad~l~~p 98 (293)
T KOG1331|consen 34 PMVRQFLDSQ---PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKR----SG---GDNVCRADALKLP 98 (293)
T ss_pred HHHHHHHhcc---CCcceeeecccCCcccCcC-----CCcceeeecchhhhhcccccc----CC---CceeehhhhhcCC
Confidence 5555555543 3456789999999975321 136789999999887766544 22 2256778887654
Q ss_pred HHHHhhhcCCCceeEEEEcCC------ccchHHHHHHHHhcCCCCeEEEE
Q 025824 145 DLLIQDEKNHGSFDFIFVDAD------KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 145 ~~l~~~~~~~~~fD~v~id~~------~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
. ...+||.++.-+. .......++++.+.|+|||-..+
T Consensus 99 ~-------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 99 F-------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred C-------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 3 2678998875443 33456788999999999998665
No 303
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=94.85 E-value=0.33 Score=43.49 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDI-NRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++.+.++..++-..+|.+..+..+...++++.+|+..+. -.......++.+...|+ .++++..+-.+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence 4666777777778888888999999999987777777776778877654 34445566666777665 35555433334
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCC--eEEEEeccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVG--GVIGYDNTLWN 194 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~g--G~lv~d~~~~~ 194 (247)
.+.... .+..++||+..+ +.-....++.+.++.+.. -.+++||++-.
T Consensus 132 ~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 132 ALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp HHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred HHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 444433 458899999876 223345556665555554 57788998643
No 304
>PRK08114 cystathionine beta-lyase; Provisional
Probab=94.85 E-value=0.41 Score=43.02 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDI-NRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+=..++.+.+....+-..+|++.....+...+.++.+|++.+. ........++.+++.|+ +++++...-.+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~ 138 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGA 138 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence 4666666667777777888999998888877666555666778877643 33445566677777776 35554432223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCC---CCeEEEEecccccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVK---VGGVIGYDNTLWNGSV 197 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~---~gG~lv~d~~~~~g~~ 197 (247)
.+.... .+.-.+|++.... ......++.+.++.+ +|-.+++||+...+..
T Consensus 139 ~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~ 193 (395)
T PRK08114 139 DIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL 193 (395)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 333332 2345799988762 212233444444333 4578889999765543
No 305
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.61 E-value=0.3 Score=42.77 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+..+||-+|+| .|..++.+++.+....+|+++|.+++.++.+++ ++. .... + + +.. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~-~~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--D-IPE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--h-hhh-------ccC
Confidence 456789999864 222334555543224689999999988777754 332 1111 1 1 111 225
Q ss_pred eeEEEEcCCc-cchHHHHHHHHhcCCCCeEEEEec
Q 025824 157 FDFIFVDADK-DNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 157 fD~v~id~~~-~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
+|+|| |..- ......++...++|++||.+++-.
T Consensus 223 ~d~vi-D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAF-ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEE-ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 89886 4432 223567888889999999998644
No 306
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.51 E-value=0.3 Score=42.12 Aligned_cols=99 Identities=23% Similarity=0.251 Sum_probs=59.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.....+||..|+| .|..++.+++.. +.+|++++.+++..+.+++ .|....+.....+..+.+ ... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence 3455688888865 467777788775 5789999999886665543 454211111111111122 111 245
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+|+|+ |... ....++.+.+.|+++|.++.-
T Consensus 232 ~~D~vi-d~~g--~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIF-DFVG--TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEE-ECCC--CHHHHHHHHHHhhcCCEEEEE
Confidence 799776 3321 235677888999999999853
No 307
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.28 E-value=0.47 Score=40.80 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=60.7
Q ss_pred HhhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIG--VYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG--~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
....+..+||-.| .+.|..++.+++.. +.++++++.+++..+.+++ .|...-+.....+..+.+..+
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~----- 207 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA----- 207 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH-----
Confidence 3345567888887 45666777788876 5789999988886655544 565221111112222222222
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+|| |... ...+....+.|+++|.++.
T Consensus 208 ~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 208 APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEE
Confidence 134699886 5432 2456788899999999985
No 308
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.09 E-value=0.0087 Score=48.37 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
.+.++||+|.|-|-.+..++-.+. +|++.|.+..+.... +..+. ++ -...+.+. .+-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL----~kk~y----nV--l~~~ew~~-------t~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRL----KKKNY----NV--LTEIEWLQ-------TDVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHH----hhcCC----ce--eeehhhhh-------cCceee
Confidence 457999999999999999886543 688999988876543 33332 12 12223322 145789
Q ss_pred EEEEcCC---ccchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 159 FIFVDAD---KDNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 159 ~v~id~~---~~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
+|.+-.- +.+....++.+...|+| +|.+|+.=++
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 8864221 23445678888888998 7887765554
No 309
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.06 E-value=0.11 Score=42.82 Aligned_cols=81 Identities=12% Similarity=0.236 Sum_probs=55.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc-CCCCcEEEEEec-chhhhHHHHhhhcCCCcee
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA-GVAHKIDFREGP-ALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~gd-~~~~l~~l~~~~~~~~~fD 158 (247)
-++||||+|.-+.=-.+... .-+-+.++.|+++..++.|+.++..+ +++..|+++... ....++.... ..+.||
T Consensus 80 i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~yd 155 (292)
T COG3129 80 IRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERYD 155 (292)
T ss_pred eEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---ccceee
Confidence 36799997655432222211 12568999999999999999999987 777778886543 3333443321 257999
Q ss_pred EEEEcCC
Q 025824 159 FIFVDAD 165 (247)
Q Consensus 159 ~v~id~~ 165 (247)
+..++.+
T Consensus 156 ~tlCNPP 162 (292)
T COG3129 156 ATLCNPP 162 (292)
T ss_pred eEecCCC
Confidence 9999877
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.97 E-value=0.42 Score=42.04 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=59.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
..+..+||-.|+| .|..++.+++.. +. +|++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CC
Confidence 3456789888864 234455666665 44 69999999987766643 4542112222222222222221 12
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
..+|+|| |..- ....++.....+++||.+++-..
T Consensus 244 ~g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence 4689776 5432 13456677889999999986443
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.95 E-value=0.2 Score=44.25 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 025824 67 EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLP 122 (247)
Q Consensus 67 ~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~ 122 (247)
.++++..+....+...|+|+|.|.|+.+..|+-.. +-+|.+||-+....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 35566666667788999999999999999988665 5799999999877666554
No 312
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.91 E-value=0.16 Score=38.98 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=28.5
Q ss_pred EEccccc--HHHHHHHh-hCCCCCEEEEEeCCcchHHHHHHH--HHHc
Q 025824 85 EIGVYTG--YSLLATAL-ALPDDGKILAMDINRENYELGLPV--IQKA 127 (247)
Q Consensus 85 EiG~g~G--~st~~la~-~~~~~~~v~~iD~~~~~~~~a~~~--~~~~ 127 (247)
|||+..| .++..++. ...++++|+++|++|...+..+++ +.-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 66666542 344589999999999999988888 5443
No 313
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.75 E-value=0.42 Score=42.29 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=57.5
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+||-.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+..+. .+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~ 258 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG 258 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC
Confidence 455788888864 233445566654 45 79999999987776654 4542111111112222222221 23
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
.+|+|| |.. .....+....+.|+++|.++.-.
T Consensus 259 g~d~vi-d~~--G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAF-EMA--GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEE-ECC--CChHHHHHHHHHHhcCCEEEEEc
Confidence 689886 432 12356677788999999988643
No 314
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.72 E-value=1.7 Score=36.80 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=64.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCC--CCcEEEEEecchhhh-HHHHhhhcCCC
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVL-DLLIQDEKNHG 155 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gd~~~~l-~~l~~~~~~~~ 155 (247)
....|+.+|||.=.-...+ ..+++.+++=+|. |+.++.-++.+.+.+. ..+.+++..|..+.+ ..+...+...+
T Consensus 81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3567999997765444444 2232345555554 4466666777776553 357788888876433 33332221112
Q ss_pred ceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
..-+++.-+. .+.....++.+.....||+.|++|-+
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 2224443332 44556777888778889999998854
No 315
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.65 E-value=0.47 Score=40.90 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=61.1
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
+++|+-||.|..+.-+..+- --.+.++|+++...+.-+.|+. ....+|..+.-..-.+ . .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~----~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP----K-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH----H-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc----c-cceEEE
Confidence 68999999999999888762 2368999999998888777764 6778998776543221 2 599998
Q ss_pred EcCCccc-----------------hHHHHHHHHhcCCCCeEEEEeccc
Q 025824 162 VDADKDN-----------------YLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 162 id~~~~~-----------------~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
...++.. +..+++ +.+.++|. ++++.||-
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~-~v~~~~Pk-~~~~ENV~ 112 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLR-IVKELKPK-YFLLENVP 112 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHH-HHHHHS-S-EEEEEEEG
T ss_pred eccCCceEeccccccccccccchhhHHHHH-HHhhccce-EEEecccc
Confidence 7644211 223333 34567885 56678873
No 316
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.46 E-value=0.57 Score=41.04 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=59.2
Q ss_pred hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 77 LVNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 77 ~~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
..+..+||-+|+|. |..++.+++.. +.+|++++.+++..+.+++ .|...-+.....+..+......+-. ...
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t-~~~ 236 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA-KAR 236 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc-ccC
Confidence 34567899999853 55666677765 4689999999987776654 4542212211111112222211100 112
Q ss_pred cee----EEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFD----FIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD----~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
.+| +| +|+.- ....++.+.+.|++||.++.-..
T Consensus 237 g~d~~~d~v-~d~~g--~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 237 GLRSTGWKI-FECSG--SKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCCCcCEE-EECCC--ChHHHHHHHHHHhcCCeEEEECc
Confidence 454 44 45432 23456677889999999987544
No 317
>PRK11524 putative methyltransferase; Provisional
Probab=93.41 E-value=0.28 Score=41.97 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHH
Q 025824 67 EGQFLNMLLKL--VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK 126 (247)
Q Consensus 67 ~~~~l~~l~~~--~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 126 (247)
-.+++..++.. .+...|||.-+|+|..++...+ + +-+.+|+|++++.++.|++.+..
T Consensus 194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 35677777665 4567999999999977665444 3 45899999999999999998864
No 318
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.37 E-value=0.67 Score=40.46 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=58.3
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+..+||-.|+| .|..++.+++... ...|++++.+++..+.++ ..|...-+.....+ .+.+..+. ....
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~-~~~~~~~~----~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAMQTFNSREMS-APQIQSVL----RELR 228 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCceEecCcccC-HHHHHHHh----cCCC
Confidence 456788888864 3334455666653 224789999888766553 34542111111112 12222221 1346
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+|.+++|+.- ....+....+.|++||.+++-..
T Consensus 229 ~d~~v~d~~G--~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILETAG--VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEECCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence 8856667643 24567778899999999997543
No 319
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.37 E-value=0.3 Score=45.29 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=58.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEec------------chhhh
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP------------ALPVL 144 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd------------~~~~l 144 (247)
.++.+|+-+|+| .|..+..++..+ +++|+.+|.+++..+.++. .|.. .+++-..+ ..+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence 356799999987 456666777776 4689999999987666554 3431 11111100 01111
Q ss_pred ---HHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCCCCeEEE
Q 025824 145 ---DLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 145 ---~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~~gG~lv 187 (247)
..+..+ ....+|+||...- .....=..+...+.+|||++|+
T Consensus 235 ~~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 111111 1357999976542 1121224567788999999977
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.30 E-value=0.83 Score=37.69 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=59.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+..+||..|+|. |..+..+++.. +.++++++.+++..+.+++ .+...-+.....+..+.+. .. ..+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCC
Confidence 4567899999885 66667777765 4799999999876555533 3422111111111111111 11 2467
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+|+++..... ......+.+.|+++|.++.-
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEE
Confidence 9999854332 14566777889999999853
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.27 E-value=0.26 Score=41.40 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=37.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHH
Q 025824 80 AKNTMEIGVYTGYSLLATALALPD-------DGKILAMDINRENYELGLPVIQK 126 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~ 126 (247)
+-+|+|+|.|.|..+..++..+.. ..+++.||++|...+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999998887652 35899999999999888888765
No 322
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.17 E-value=2.3 Score=33.30 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 65 ADEGQFLNMLLKL--VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 65 ~~~~~~l~~l~~~--~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.++...|...+.. ....+|+=|||=+-+..+.- ...++.+++.+|.+..+. ..+- +...+.-.+..+
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~~-~~F~fyD~~~p~ 77 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFGG-DEFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcCC-cceEECCCCChh
Confidence 5556656555443 34578999997665554433 223367999999998743 2221 113333333333
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchH-HHHHHHHhcCCCCeEEEE
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYL-NYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~-~~l~~~~~~L~~gG~lv~ 188 (247)
.++.-. .++||+|++|.+- +... .....+.-++++++-|+.
T Consensus 78 ~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 78 ELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred hhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 333221 5799999999983 2222 223333445677676663
No 323
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.16 E-value=3 Score=34.94 Aligned_cols=115 Identities=12% Similarity=0.165 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
.+....++..+-..++... |..=+|+=..+..+. .+.-++..+|+.|+=....++++.. ..++++..+|....
T Consensus 74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~ll---R~qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~ 146 (279)
T COG2961 74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLL---REQDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLA 146 (279)
T ss_pred hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHc---chhceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHH
Confidence 3555666666655555544 555555444444443 4467999999999999988888873 35899999999887
Q ss_pred hHHHHhhhcCCCceeEEEEcCC---ccchHHHHHHHHhcCC--CCeEEEE
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD---KDNYLNYHKRLIELVK--VGGVIGY 188 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~---~~~~~~~l~~~~~~L~--~gG~lv~ 188 (247)
+...++. .+.=-+|+||.+ +..|...++.+.+.++ ++|+.++
T Consensus 147 l~a~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 147 LKAHLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred HhhhCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 7655432 355789999998 5566666666655444 4666653
No 324
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.14 E-value=0.31 Score=39.53 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 025824 65 ADEGQFLNMLLKL--VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLP 122 (247)
Q Consensus 65 ~~~~~~l~~l~~~--~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~ 122 (247)
+.-.+++..++.. .+...|||.-||+|..+....+ + +-+.+++|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence 4445666666654 4567999999999987665544 4 3589999999999998864
No 325
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.11 E-value=0.99 Score=39.49 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHhhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhh
Q 025824 74 LLKLVNAKNTMEIGVYT--GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~--G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~ 151 (247)
.....+.++||-.|... |..++.||+++. ..++++-.+++..+ .+++.|...-+.+...|..+.+.++.
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t--- 207 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT--- 207 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc---
Confidence 33455678999999554 446667888874 36666666665333 45556764445555666555555542
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
....+|+|| |..- ...+......|+++|.++.-.
T Consensus 208 -~g~gvDvv~-D~vG---~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 208 -GGKGVDVVL-DTVG---GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred -CCCCceEEE-ECCC---HHHHHHHHHHhccCCEEEEEe
Confidence 124799887 4332 345666778899999988633
No 326
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.01 E-value=1.2 Score=38.72 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=61.0
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhh
Q 025824 75 LKLVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDE 151 (247)
Q Consensus 75 ~~~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~ 151 (247)
....+..+||-.|+ +.|..++.+++.. +.+++++..+++..+.+++. .|...-+..... +..+.+..+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---- 217 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---- 217 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh----
Confidence 34456688998885 5666777788775 57899988888765555432 454221221111 222222222
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+|| |..-. ..+..+.+.|+++|.++.
T Consensus 218 -~~~gvd~v~-d~~g~---~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 218 -FPNGIDIYF-DNVGG---KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred -CCCCcEEEE-ECCCH---HHHHHHHHHhccCcEEEE
Confidence 125799887 54321 456788899999999985
No 327
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.01 E-value=1.2 Score=39.09 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=62.4
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhhc
Q 025824 76 KLVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDEK 152 (247)
Q Consensus 76 ~~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~~ 152 (247)
...+..+||-.|+ +.|..++.+|+.. +.++++++.+++..+.+++ ..|...-+..... +..+.+..+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~----- 224 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY----- 224 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH-----
Confidence 3455678998887 4677777888876 5789999988876555432 3454221221111 222223222
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..+.+|+|| |..- ...+..+.+.|++||.++.-.
T Consensus 225 ~~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 FPEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence 124689887 5432 246678889999999998643
No 328
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.99 E-value=0.38 Score=40.84 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCEEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYTGYSLLATA-LALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..+.|+-+| ---..++.++ ..+| .+|..+|+++..++.-.+..++.|+ ++++.+.-|....+|+-. ...|
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~-----~~kF 222 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL-----KRKF 222 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH-----HhhC
Confidence 457799998 3333444433 3444 5899999999999999999999998 569999999888777643 5799
Q ss_pred eEEEEcCCc--cchHHHHHHHHhcCCCC
Q 025824 158 DFIFVDADK--DNYLNYHKRLIELVKVG 183 (247)
Q Consensus 158 D~v~id~~~--~~~~~~l~~~~~~L~~g 183 (247)
|+++-|.+. .....++..-...|+.-
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCC
Confidence 988888762 22233343334566654
No 329
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.98 E-value=0.95 Score=39.17 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+.+|.-||-| .|..+..+|..+ ++.|+-+|+|.+.+......+. .|++.+..+...+-.. -.+.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~-------v~~aD 233 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEA-------VKKAD 233 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHH-------hhhcc
Confidence 4567777755 466777777666 5899999999987766555442 4677877776544333 35788
Q ss_pred EEEE----cCCccchHHHHHHHHhcCCCCeEEEEeccccccc
Q 025824 159 FIFV----DADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGS 196 (247)
Q Consensus 159 ~v~i----d~~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~ 196 (247)
+++- -+. ....-..+...+.++||++|+=--+...|+
T Consensus 234 lvIgaVLIpga-kaPkLvt~e~vk~MkpGsVivDVAiDqGGc 274 (371)
T COG0686 234 LVIGAVLIPGA-KAPKLVTREMVKQMKPGSVIVDVAIDQGGC 274 (371)
T ss_pred EEEEEEEecCC-CCceehhHHHHHhcCCCcEEEEEEEcCCCc
Confidence 7763 222 222234567778999999987333333443
No 330
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.91 E-value=0.37 Score=42.92 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=63.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc-------
Q 025824 81 KNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK------- 152 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~------- 152 (247)
.+|--+| -||.++.+|..+.. +.+|+++|+++..++...+ | +..+..-+..+.+......|.
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 4566666 77887777766543 5799999999987654321 2 233333333333333322210
Q ss_pred -CCCceeEEEEcCC----------ccchHHHHHHHHhcCCCCeEEEEeccccccc
Q 025824 153 -NHGSFDFIFVDAD----------KDNYLNYHKRLIELVKVGGVIGYDNTLWNGS 196 (247)
Q Consensus 153 -~~~~fD~v~id~~----------~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~ 196 (247)
.-...|++++.-+ -+......+.+.+.|++|-++++.-+.++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 0125676665432 1222345566678999999999999888874
No 331
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.85 E-value=1.9 Score=37.11 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=60.8
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhh
Q 025824 75 LKLVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDE 151 (247)
Q Consensus 75 ~~~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~ 151 (247)
....+..+||-.|. +.|..++.+++.. +.++++++.+++..+.++ ..|...-+..... +..+.+...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHh----
Confidence 34456678988884 5677777788775 568999998887655553 3565211111111 122222222
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+.+|+|| |..-. ..+....+.|+++|.++.-
T Consensus 204 -~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEe
Confidence 134699887 54322 3457788999999999864
No 332
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.81 E-value=0.97 Score=39.24 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 81 KNTMEIGV--YTGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 81 ~~vLEiG~--g~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+||-.|. +.|..++.++++. +. +|++++.+++..+.+++. .|...-+.....+..+.+..+ ....+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~-----~~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL-----CPEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH-----CCCCc
Confidence 68988885 5666777788876 45 799999888755554432 465221111111222222222 13569
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+|| |.... ..+..+.+.|+++|.++.
T Consensus 226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYF-DNVGG---EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence 9887 54322 235777889999999985
No 333
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.62 E-value=0.73 Score=41.08 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=54.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
++.+|+-+|+| .|..+...+..+ +.+|+.+|.+++..+.+...+ +. .+.....+ .+.+... -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~-~~~l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSN-AYEIEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCC-HHHHHHH------HccC
Confidence 56779999987 555556666655 468999999987654433322 21 12221122 2223332 2578
Q ss_pred eEEEEcCCc--cchHH-HHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADK--DNYLN-YHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~--~~~~~-~l~~~~~~L~~gG~lv~ 188 (247)
|+|+..... ...+. .-+...+.++||++|+-
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 999865421 11122 22555677899988764
No 334
>PRK09028 cystathionine beta-lyase; Provisional
Probab=92.57 E-value=2.6 Score=37.94 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchhhhH
Q 025824 67 EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
Q Consensus 67 ~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~ 145 (247)
...+-..++...+...++-..+|+......+...+.++.+|+..+..- .....+...+...|+ .+.++..+..+.+.
T Consensus 63 ~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~ 140 (394)
T PRK09028 63 HFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIR 140 (394)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHH
Confidence 334444555555555677777676665555544566678888887653 333444455555554 34444322223344
Q ss_pred HHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccccc
Q 025824 146 LLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWNG 195 (247)
Q Consensus 146 ~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~g 195 (247)
... ...-.+|++..+ +......++.+.++.+. |..+++||++..+
T Consensus 141 ~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 141 ELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred Hhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 332 345678988765 23334566666666554 6677788887554
No 335
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=92.48 E-value=4.8 Score=36.20 Aligned_cols=124 Identities=17% Similarity=0.120 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEe-CCcchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMD-INRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD-~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+-..+........++-.-+|...++..+...+|.+.++++.+ +--......++...+.|. ..+++..+-.+-
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi--e~~~vd~~~~~~ 154 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGG--EGDFVDVDDLKK 154 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCc--eeeeechhhHHH
Confidence 33444445566667788899999888888887777788788888875 344556677777777775 355655544444
Q ss_pred hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcC-CCCeEEEEecccccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELV-KVGGVIGYDNTLWNG 195 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L-~~gG~lv~d~~~~~g 195 (247)
+.... .+..++||+-.+ +--...+++.+.++- ++|-.+|+||++-++
T Consensus 155 ~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 155 ILKAI-----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHhh-----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 44332 346999999766 222223344444333 567777889887654
No 336
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=92.38 E-value=2 Score=38.69 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDIN-RENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+...++-+++|+......+...+.++.+|+..+.. ..........++..|. .+.++..+-.+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 45566777777777788888988888877666554445556777776532 2334445555666665 35555333223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWN 194 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~ 194 (247)
.+.... ...-.+|++..+ .......++.+.++.+. |-.+++|++.-.
T Consensus 147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 333322 234678887544 22222234444444443 567778888543
No 337
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=92.37 E-value=3.2 Score=37.08 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+=..++...+...++=..+|++.....+...+.++.+|+..+..-. ....+...++..|+ +++++..+..+.
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~ 127 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGED 127 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH
Confidence 444555555556566677777777766665555555666778877765432 22333344555554 244432211133
Q ss_pred hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccccccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWNGSV 197 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~g~~ 197 (247)
+.... .+...+|++..+ .......++.+.++.+. |..+++|++...|..
T Consensus 128 l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 128 IATLI-----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred HHHhc-----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 33322 345778988755 33345556666665554 667778988755543
No 338
>PLN02740 Alcohol dehydrogenase-like
Probab=92.20 E-value=1.5 Score=39.01 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=57.7
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE--ecchhhhHHHHhhh
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDLLIQDE 151 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gd~~~~l~~l~~~~ 151 (247)
...+..+||-+|+| .|..++.+++.. +. +|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--- 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence 34556789998864 233445566655 45 79999999987777654 45422122111 11222233321
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEec
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDN 190 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~ 190 (247)
.+.+|+|| |..- ....+......+++| |.+++-.
T Consensus 266 --~~g~dvvi-d~~G--~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 --GGGVDYSF-ECAG--NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred --CCCCCEEE-ECCC--ChHHHHHHHHhhhcCCCEEEEEc
Confidence 23699776 4331 234566777788886 8877633
No 339
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.15 E-value=0.97 Score=33.73 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 70 FLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 70 ~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
+-..+++..+..+|+|+|.|.-......+... +..|+++|+++. ... . .+.++..|..+--..+
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~i-- 67 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEI-- 67 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH--
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c----CcceeeecccCCCHHH--
Confidence 33445556677899999988766544433332 579999999997 111 2 3578888887632222
Q ss_pred hhcCCCceeEEEEcCCccchHHHHHHHHhcC
Q 025824 150 DEKNHGSFDFIFVDADKDNYLNYHKRLIELV 180 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L 180 (247)
-...|+|..--++......+-.+.+.+
T Consensus 68 ----Y~~a~lIYSiRPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 68 ----YEGADLIYSIRPPPELQPPILELAKKV 94 (127)
T ss_dssp ----HTTEEEEEEES--TTSHHHHHHHHHHH
T ss_pred ----hcCCcEEEEeCCChHHhHHHHHHHHHh
Confidence 357899986555445555555555433
No 340
>PTZ00357 methyltransferase; Provisional
Probab=92.11 E-value=0.95 Score=43.28 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=66.4
Q ss_pred EEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCcchHHHHHHHHHH-cCC-------CCcEEEEEecchhhhHHHHhh
Q 025824 82 NTMEIGVYTGYSLLATALA---LPDDGKILAMDINRENYELGLPVIQK-AGV-------AHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~-------~~~i~~~~gd~~~~l~~l~~~ 150 (247)
.|+-+|+|-|-..-...++ .....+|++||.|+..+......... ..+ .++|+++..|..+.-......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999876554443 33457999999998866555444322 223 346999999998763210000
Q ss_pred ----hcCCCceeEEEEc-----CCccchHHHHHHHHhcCCC----CeEE
Q 025824 151 ----EKNHGSFDFIFVD-----ADKDNYLNYHKRLIELVKV----GGVI 186 (247)
Q Consensus 151 ----~~~~~~fD~v~id-----~~~~~~~~~l~~~~~~L~~----gG~l 186 (247)
....+++|+|+.- ++-+--++.|+-+.+.||+ +|++
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhccccccc
Confidence 0001379998732 2344557888888888876 7763
No 341
>PRK05939 hypothetical protein; Provisional
Probab=92.09 E-value=4.5 Score=36.41 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+=..++...+....+-+.+|.+.....+...+.++.+|+..+..-. ..... ..+...|. .+.++..+-.+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence 3666666667777777777787887766655555445666778888765432 12222 33555564 34444322223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWN 194 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~ 194 (247)
.+.... ...-.+|++... .......++.+.++.+. |..+++|++.-.
T Consensus 123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccc
Confidence 333332 345678887654 22334555666655554 556777776533
No 342
>PRK13699 putative methylase; Provisional
Probab=92.07 E-value=0.61 Score=38.62 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=43.9
Q ss_pred HHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc
Q 025824 67 EGQFLNMLLKL--VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA 127 (247)
Q Consensus 67 ~~~~l~~l~~~--~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 127 (247)
-.+++..++.. .+...|||.-||+|.++....+. +-+.+++|++++..+.+.+.++..
T Consensus 149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555655543 45678999999999877665543 458999999999999998888764
No 343
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.00 E-value=1 Score=39.02 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
..+..+||-+|+| .|..++.+++.. +.+ |++++.+++..+.+++ .|...-+.....+ .+.+..+. ..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~ 229 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SG 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CC
Confidence 3456788888763 233444566665 455 9999999887666543 4542112211112 22222221 13
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+|+||-... ....+....+.|+++|.+++-
T Consensus 230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 47998873322 233456677889999999863
No 344
>PLN02827 Alcohol dehydrogenase-like
Probab=91.87 E-value=1.5 Score=39.03 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=57.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE--ecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gd~~~~l~~l~~~~~~ 153 (247)
..+..+||-.|+| .|..++.++++.. ...+++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 260 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----- 260 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence 4456789888863 3334455666653 2368899988887666543 56522121111 12222222221
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEec
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDN 190 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~ 190 (247)
.+.+|+|| |..- ....+..+.+.+++| |.+++-.
T Consensus 261 ~~g~d~vi-d~~G--~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSF-ECVG--DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEE-ECCC--ChHHHHHHHHhhccCCCEEEEEC
Confidence 23689876 4431 234567778889998 9998643
No 345
>PRK05967 cystathionine beta-lyase; Provisional
Probab=91.84 E-value=4 Score=36.75 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINREN-YELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++........+-+.+|++.....+...+.++.+|+..+..-.. ....++.++..|. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 35444444555555555556777777777666665566767888887654432 2344566677775 46665433223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
.+.... .+...+|++..+ .......++.+.++.+. |.++++|+++
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 344432 345678998865 23345566666666654 5677788885
No 346
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.68 E-value=0.84 Score=39.72 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=58.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 83 TMEIGVYTGYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
|+|+-||.|..+.-+-.+ +.+ +.++|+++..++.-+.|+.. .++.+|..+....- ...+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~------~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD------IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh------CCCcCEEE
Confidence 589999999999888764 344 56899999988777776532 34567776553321 24689887
Q ss_pred EcCCcc------------c-----hHHHHHHHHhcCCCCeEEEEeccc
Q 025824 162 VDADKD------------N-----YLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 162 id~~~~------------~-----~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
...++. + +..+++ +.+.++|. ++++.||-
T Consensus 65 gg~PCq~fS~ag~~~~~~d~r~~L~~~~~r-~i~~~~P~-~~v~ENV~ 110 (315)
T TIGR00675 65 GGFPCQPFSIAGKRKGFEDTRGTLFFEIVR-ILKEKKPK-FFLLENVK 110 (315)
T ss_pred ecCCCcccchhcccCCCCCchhhHHHHHHH-HHhhcCCC-EEEeeccH
Confidence 654311 1 122232 33556785 77788873
No 347
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.59 E-value=0.34 Score=41.86 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCC--CE---EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 68 GQFLNMLLKLVNA--KN---TMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 68 ~~~l~~l~~~~~~--~~---vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
-.++..|+...+. .+ -+||| +|.+.++.+.... .+-..+++|++......|+.++.+.++++++.+++-+..
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIg--tgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ 163 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIG--TGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ 163 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeecc--CchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecch
Confidence 4555555544321 22 36777 6677776655432 246789999999999999999999999999999888665
Q ss_pred hh-hHH-HHhhhcCCCceeEEEEcCC
Q 025824 142 PV-LDL-LIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 142 ~~-l~~-l~~~~~~~~~fD~v~id~~ 165 (247)
+. +.. +..+ .+..|||+.++.+
T Consensus 164 ktll~d~~~~~--~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 164 KTLLMDALKEE--SEIIYDFCMCNPP 187 (419)
T ss_pred hhcchhhhccC--ccceeeEEecCCc
Confidence 42 222 2111 1234777766543
No 348
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.49 E-value=2.7 Score=35.50 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+..+||-+|+| .|..++.+++... ..+|+++|.+++..+.+++ .|...-+.. .+..+.+..+. ....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCC
Confidence 55788888864 3445555666653 2348999998887666554 454211111 11112222221 12468
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
|+|| |..- ....++.+.+.|+++|.++.-...
T Consensus 189 d~vi-d~~G--~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVAL-EFSG--ATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEE-ECCC--ChHHHHHHHHHhcCCCEEEEeccC
Confidence 9886 4321 234567788899999999865443
No 349
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.43 E-value=2 Score=37.59 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=64.7
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhhhcC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQDEKN 153 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~~~~ 153 (247)
+..+..+|.-+||| .|.+++.-|.... ..+++++|++++..+.|++ .|..+-+.-... |..+.+..+.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T----- 251 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT----- 251 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc-----
Confidence 34566788888887 5667777666654 7899999999998888876 465332222212 4444445442
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+...|.+|--.. ....++..+..++++|..++-.+
T Consensus 252 ~gG~d~~~e~~G---~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 252 DGGADYAFECVG---NVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred CCCCCEEEEccC---CHHHHHHHHHHHhcCCeEEEEec
Confidence 346787753222 23355666666677888776444
No 350
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.43 E-value=2.1 Score=37.30 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
...+.++||-.|+| .|..++.+++... ..++++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence 34456788888765 4455566777653 3369999999877666553 5542212221122222222221 13
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
..+|+|+-.... ...+..+.+.|+++|.++.-..
T Consensus 234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 469988743321 3457788889999999986443
No 351
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.40 E-value=1.4 Score=38.57 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDI---NRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
+..+||-+|+| .|..+..+++.. +.+|++++. +++..+.+ ++.|.. .+.....+..+ .. ..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~----~~~Ga~-~v~~~~~~~~~----~~----~~ 236 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIV----EELGAT-YVNSSKTPVAE----VK----LV 236 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHH----HHcCCE-EecCCccchhh----hh----hc
Confidence 56789888875 244556677765 468999987 45544444 445642 12111111111 10 13
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
..+|+||--.. ....+....+.|++||.+++-..
T Consensus 237 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence 57998764332 23467788899999999986443
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.23 E-value=1.6 Score=37.78 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
...+..+||-.|+| .|..++.+++... ..++++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence 34456788777764 4666677777753 2478888887765555443 3432112222222222222221 13
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
+.+|++| |.... ...+....+.|+++|.++.-
T Consensus 235 ~~~d~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVI-EAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 5799887 43211 24677778899999998853
No 353
>PRK07671 cystathionine beta-lyase; Provisional
Probab=91.09 E-value=3.2 Score=36.98 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+....+=+|+|++.....+ ..+.++.+|++.+..-. ......+.+...|. ++.++..+-.+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 4666666677777666666666887776554433 24555778887775432 33444445555554 34444322222
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC-CCeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK-VGGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~-~gG~lv~d~~~~ 193 (247)
.+.... .+...+|++..+ +......++.+.++.+ .|..+++|+++.
T Consensus 126 ~l~~ai-----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 126 EVEEAI-----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 333322 245678887544 1112233444444444 367788888753
No 354
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.81 Score=40.31 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=40.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHHHHHHHHHcC
Q 025824 80 AKNTMEIGVYTGYSLLATALALP-------DDGKILAMDINRENYELGLPVIQKAG 128 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~g 128 (247)
+-.++|||.|.|..+..+++.+. ...++..||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45799999999999988887652 25799999999999888888887653
No 355
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.99 E-value=0.75 Score=35.59 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=56.0
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc------CCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA------GVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
+|.-||+|.+.+++...-+.. +-+|+....+++.++..++.-... .+..++.+ ..|..+.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 366678776666554332222 458899999887665544432210 11123433 23332222 4
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..|+|++-.+......+++.+.++++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 569999988877788999999999988888775
No 356
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.98 E-value=3.3 Score=36.46 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHHcCCCCcEEEE
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINR---------------------ENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
+..+||-+|||. |......+...+ -++++.+|.+. ..++.+++.+++.+-.-+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 457899999873 333222222222 36899999874 2345666777766543456666
Q ss_pred Eecch-hhhHHHHhhhcCCCceeEEEEcCC
Q 025824 137 EGPAL-PVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 137 ~gd~~-~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
..+.. +.+..+ -..+|+|+.-.+
T Consensus 102 ~~~~~~~~~~~~------~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEEL------VKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHHH------hcCCCEEEEcCC
Confidence 66553 233333 357998876554
No 357
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.78 E-value=3.6 Score=33.28 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=44.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHHcCCCCcEEEEE
Q 025824 78 VNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINR-------------------ENYELGLPVIQKAGVAHKIDFRE 137 (247)
Q Consensus 78 ~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~g~~~~i~~~~ 137 (247)
....+|+-+|||. |......+...+ -++++.+|.+. ..++.+.+.+...+-.-+++.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 3567899999873 333333332222 36899999873 23455566666544322344444
Q ss_pred ecchh-hhHHHHhhhcCCCceeEEEEcCC
Q 025824 138 GPALP-VLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 138 gd~~~-~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
....+ .+..+ -..+|+|+.-.+
T Consensus 98 ~~i~~~~~~~~------~~~~D~Vi~~~d 120 (202)
T TIGR02356 98 ERVTAENLELL------INNVDLVLDCTD 120 (202)
T ss_pred hcCCHHHHHHH------HhCCCEEEECCC
Confidence 33322 22333 357999876554
No 358
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.76 E-value=1.5 Score=38.28 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=65.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC-cee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG-SFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~-~fD 158 (247)
..+++|+-||.|...+-+..+- ---+.++|+++..++.-+.|+.. ..+..+|..+....-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 4579999999999988777652 13578999999987777666543 3566677765544321 12 789
Q ss_pred EEEEcCCccc----------------hHHHHHHHHhcCCCCeEEEEecc
Q 025824 159 FIFVDADKDN----------------YLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 159 ~v~id~~~~~----------------~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
+++-..+++. ..-.+-.+...++| -++++.||
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV 117 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENV 117 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecC
Confidence 8876544211 11233445567888 78888988
No 359
>PRK06234 methionine gamma-lyase; Provisional
Probab=90.73 E-value=3.5 Score=37.04 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+...++-+++|++.....+...++++.+|+..+..-. ........+...|. ++.++..+-.+
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 3556666667777666667777887776655555445555677776664322 22223344455554 34443322122
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC---CCeEEEEecccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK---VGGVIGYDNTLWNG 195 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~---~gG~lv~d~~~~~g 195 (247)
.+.... ...-++|++..+ +......++.+.++.+ +|.++++|+++..+
T Consensus 141 ~l~~~i-----~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 141 EVRNAL-----KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HHHHHh-----ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 233222 234578887654 1222223444444444 47788889886443
No 360
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.59 E-value=3.5 Score=37.51 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+.+..+=.++|++.....+...+.++.+|+..+..- .........+...|. ++.++..+-.+
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence 466666777777777777888888887776666655556567787766432 223344455566664 34444332223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... .+...+|++... +......++.+.++.+. |..+++|++..
T Consensus 141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 333332 245678888643 21222223444444443 56677888753
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.44 E-value=2.6 Score=33.71 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=54.6
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHH------------HHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 82 NTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLP------------VIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~------------~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
+|--+| .||.++.+|..+.. +-+|+++|++++.++..++ .+++.....++++. .|..+.+
T Consensus 2 ~I~ViG--lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIG--LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEEC--CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 455565 66666666555432 5699999999987765432 11111101233332 2222222
Q ss_pred hhhcCCCceeEEEEcCC----------ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 149 QDEKNHGSFDFIFVDAD----------KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~----------~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
...|++|+.-+ ........+.+.+.++++.++++.-+...|
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 35688887543 122456677788899999999988777665
No 362
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.41 E-value=1.3 Score=38.07 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=52.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+.++||-+|+| .|..++.+++..+ ...|+++|.+++.++.+... . ++ +..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence 45678888864 4556666777653 23477888888766555431 1 11 11110 0 2468
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
|+|| |+.- ....++.+.+.|+++|.+++-.
T Consensus 202 Dvvi-d~~G--~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 202 RAIY-DASG--DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CEEE-ECCC--CHHHHHHHHHhhhcCcEEEEEe
Confidence 9776 4432 2345678889999999999643
No 363
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.39 E-value=0.21 Score=36.32 Aligned_cols=38 Identities=18% Similarity=0.543 Sum_probs=27.3
Q ss_pred ceeEEEEcCC---------ccchHHHHHHHHhcCCCCeEEEEecccc
Q 025824 156 SFDFIFVDAD---------KDNYLNYHKRLIELVKVGGVIGYDNTLW 193 (247)
Q Consensus 156 ~fD~v~id~~---------~~~~~~~l~~~~~~L~~gG~lv~d~~~~ 193 (247)
+||+|++=.. ......+|+.+..+|+|||++++.-=-|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4898886443 3556789999999999999999864433
No 364
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.39 E-value=1.7 Score=37.46 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=51.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 81 KNTMEIGVYTGYSLLATALALPDD---GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+|.=||+| ..+..++..+... .+|+++|.+++..+.++ ..|... . ...+. ... -...
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~-~~~~~----~~~------~~~a 67 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--R-VTTSA----AEA------VKGA 67 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--e-ecCCH----HHH------hcCC
Confidence 578888865 4444444433222 38999999988665543 334311 1 11111 111 2457
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+|++..+.......++.+.+.+++|++++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 988887765555666677777788887554
No 365
>PRK08064 cystathionine beta-lyase; Provisional
Probab=90.36 E-value=11 Score=33.66 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+....+-+++|++.....+. .+.++.+|+..+..-. ......+.++..|. ++.++..+-.+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence 46666666777766665555556766655444443 4555677877765332 33444455566664 34444332223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... .....+|++..+ .......++.+.++.+. |..+++|++..
T Consensus 130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 333221 235689987755 22222333444443333 66777888753
No 366
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.28 E-value=2.8 Score=37.04 Aligned_cols=101 Identities=21% Similarity=0.313 Sum_probs=58.0
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE--ecchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gd~~~~l~~l~~~~~~ 153 (247)
.....+||-+|+| .|..++.+|+.+. ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----- 252 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----
Confidence 3456789888864 3445566777653 2379999999987776644 45422122111 11112222221
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEec
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDN 190 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~ 190 (247)
.+.+|+|| |..- ....+..+.+.++++ |.++.-.
T Consensus 253 ~~g~d~vi-d~~G--~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 DGGVDYSF-ECIG--NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCCEEE-ECCC--CHHHHHHHHHHhhcCCCeEEEEe
Confidence 23689776 4432 234567778889886 8877543
No 367
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=90.28 E-value=0.17 Score=45.26 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=56.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCc-EEEEEecchhhhH
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHK-IDFREGPALPVLD 145 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~-i~~~~gd~~~~l~ 145 (247)
..+..|-|+-||.|-.++..+.. +++|++-|.+|+.++..+.++....+.+. |+++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 35677899999999999888765 69999999999999999999998777655 9999999988773
No 368
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=90.15 E-value=4.2 Score=36.41 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+...++-.++|++.....+...+.++.+|+..+..-. ............+. .+.++...-.+
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 128 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQ 128 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHH
Confidence 3556666677777666666777777766655555545555678877765443 23344443333332 23433211122
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCC-CeEEEEecccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKV-GGVIGYDNTLWNG 195 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~-gG~lv~d~~~~~g 195 (247)
.+.... ....++|++..+. ......++.+.++.+. |.++++|+++..+
T Consensus 129 ~l~~~l-----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 129 ALRAAL-----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred HHHHhc-----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 233221 2356888886541 1111223344333333 6778888886443
No 369
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=90.13 E-value=7.8 Score=34.30 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+-..++...+....+-.++|+......+ ..++++.+|+..+..-. ........+...|. ++.++..+-.+.
T Consensus 52 pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~~ 128 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLKA 128 (366)
T ss_pred chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHHH
Confidence 555666666777666666666666655544433 34555677877765332 33344555555664 344433221223
Q ss_pred hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
+.... .+..++|++..+ +......++.+.++.+. |..+++|+++
T Consensus 129 l~~~i-----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 129 IEQAI-----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHhc-----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 33321 235688887544 22233455666555544 6678888886
No 370
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.03 E-value=5.4 Score=33.61 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=50.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCCcee
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHGSFD 158 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~~fD 158 (247)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++.++...+.+...+ .++.++..|..+. +..+...-...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666664 56888888887667899999998876655555555433 3577777777542 222221100135789
Q ss_pred EEEEcCC
Q 025824 159 FIFVDAD 165 (247)
Q Consensus 159 ~v~id~~ 165 (247)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9887654
No 371
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.97 E-value=1.1 Score=40.08 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=52.7
Q ss_pred eCCcchHHHHHHHHH--HcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE-EcCC----ccchHHHHHHHHhcCCCC
Q 025824 111 DINRENYELGLPVIQ--KAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF-VDAD----KDNYLNYHKRLIELVKVG 183 (247)
Q Consensus 111 D~~~~~~~~a~~~~~--~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~-id~~----~~~~~~~l~~~~~~L~~g 183 (247)
+..|..+.. +++. +.++ +++++++++..+.+..+ +.+++|.++ +|+. .....+..+.+.+.++||
T Consensus 256 ~~~P~YL~~--e~f~~lr~~~-drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pg 327 (380)
T PF11899_consen 256 DCCPPYLRP--ENFEALRARL-DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPG 327 (380)
T ss_pred CCCChhhcH--hHHHHHhcCC-CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCC
Confidence 555554422 2322 3455 89999999999988765 368999664 5653 455667778888999999
Q ss_pred eEEEEecccc
Q 025824 184 GVIGYDNTLW 193 (247)
Q Consensus 184 G~lv~d~~~~ 193 (247)
|.++.-+...
T Consensus 328 aRV~~Rsa~~ 337 (380)
T PF11899_consen 328 ARVLWRSAAV 337 (380)
T ss_pred CEEEEeeCCC
Confidence 9999766543
No 372
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.92 E-value=4.2 Score=35.15 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCC--CcEEEEEecch-h-hhHHHHhhhcCCC
Q 025824 80 AKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPAL-P-VLDLLIQDEKNHG 155 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gd~~-~-~l~~l~~~~~~~~ 155 (247)
...|+-+|||.- |...--..+++.+++=+|. |+.++.=++.++..+.. .+.+++..|.. + ....|.+.|+..+
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 678999997644 3322222233456666666 66777777777776643 36888889887 3 4455654443233
Q ss_pred ceeEEEEcC-----CccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFDFIFVDA-----DKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD~v~id~-----~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
..=+++.-+ +.+...++|+.+..+..||..++.+-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 333444433 245667888899888888888877643
No 373
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.88 E-value=3.7 Score=36.19 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe--cchhhhHHHHhhhc
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG--PALPVLDLLIQDEK 152 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g--d~~~~l~~l~~~~~ 152 (247)
...+..+||-+|+| .|..+..+++.+. ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 253 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---- 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh----
Confidence 34556788888863 3444555666653 2379999999987766643 454221211111 1222222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEec
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDN 190 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~ 190 (247)
.+.+|+|| |... ....+....+.++++ |.++.-.
T Consensus 254 -~~g~d~vi-d~~g--~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 254 -DGGVDYTF-ECIG--NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred -CCCCcEEE-ECCC--ChHHHHHHHHhhccCCCeEEEEc
Confidence 23699886 4321 134667778899887 8887644
No 374
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.81 E-value=1.7 Score=39.04 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCEEEEEcc--cccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHc----CCCCcEEEEE----ecchhhhHH
Q 025824 78 VNAKNTMEIGV--YTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKA----GVAHKIDFRE----GPALPVLDL 146 (247)
Q Consensus 78 ~~~~~vLEiG~--g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----g~~~~i~~~~----gd~~~~l~~ 146 (247)
.+..+||-+|+ +.|..++.++++... ..+|+++|.+++.++.+++.+... |. ...++. .+..+.+..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence 34568888873 366677777777531 247999999999988888753211 22 111221 122222222
Q ss_pred HHhhhcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 147 LIQDEKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+. ....+|+||.... ....+....+.++++|.+++
T Consensus 252 ~t----~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 252 LT----GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred Hh----CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEEE
Confidence 21 1346998876432 24566778889998775543
No 375
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.67 E-value=1.9 Score=39.49 Aligned_cols=96 Identities=13% Similarity=0.007 Sum_probs=63.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEE
Q 025824 82 NTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIF 161 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~ 161 (247)
++|.+|||.-.....+-+.. --.|+.+|+|+..++....--. -.....++...|.....- ++++||+|+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f-------edESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF-------EDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC-------CCcceeEEE
Confidence 79999999887666665442 2479999999987765433221 112457788888765422 267888776
Q ss_pred E----c-----CC----ccchHHHHHHHHhcCCCCeEEEE
Q 025824 162 V----D-----AD----KDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 162 i----d-----~~----~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
- | .. ..+....+..+.++|++||..+.
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 3 1 11 12345667888899999999664
No 376
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.65 E-value=3.6 Score=35.57 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=60.2
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 75 LKLVNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
....+..+||-.|+|. |..++.+|+.+ +.+++++..+++..+.+++ .+...-+.....+..+.+..+. .
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~ 224 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D 224 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence 3445667898888763 66777788775 5789999888776655433 3432212222222223333221 1
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
...+|++|-.... ...+..+.+.|+++|.++.
T Consensus 225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 3469988753321 3456777888999999874
No 377
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.46 E-value=1.8 Score=38.72 Aligned_cols=83 Identities=24% Similarity=0.164 Sum_probs=51.0
Q ss_pred CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCCc
Q 025824 81 KNTMEIGVYTGYSLLATALALP--DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHGS 156 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~~ 156 (247)
++||-|||| ..+...+..+. .+.+|+..|.+.+.++.+..... .+++..+-|+.+. +..++ ..
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~ 68 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD 68 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence 579999984 44433333321 13799999999887666554432 2678888777653 44443 45
Q ss_pred eeEEEEcCCccchHHHHHHH
Q 025824 157 FDFIFVDADKDNYLNYHKRL 176 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~ 176 (247)
+|+|+.-.+.......++.|
T Consensus 69 ~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 69 FDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CCEEEEeCCchhhHHHHHHH
Confidence 69998766544444444444
No 378
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=89.45 E-value=3.8 Score=36.64 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l 144 (247)
|....+-..++...+...++-.++|+......+...+.++.+|+..+..-......-+.+...|. ++.+..-|. +.+
T Consensus 53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~-~~l 129 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPST-EDI 129 (385)
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCH-HHH
Confidence 45555556666666667777777766655555554565567777665543322222122333443 333333332 233
Q ss_pred HHHHhhhcCCC-ceeEEEEcCCc--cchHHHHHHHHhcCC-CCeEEEEecccc
Q 025824 145 DLLIQDEKNHG-SFDFIFVDADK--DNYLNYHKRLIELVK-VGGVIGYDNTLW 193 (247)
Q Consensus 145 ~~l~~~~~~~~-~fD~v~id~~~--~~~~~~l~~~~~~L~-~gG~lv~d~~~~ 193 (247)
.... .. +.++|++.... ......++.+.++.+ .|..+++|++.-
T Consensus 130 ~~~i-----~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 130 IEAI-----KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred HHhc-----CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3322 23 57889886542 111222344444433 466777888853
No 379
>PRK07582 cystathionine gamma-lyase; Validated
Probab=89.40 E-value=6.6 Score=34.82 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+-..++... ...++-+++|+......+...+.++.+|++.+... .....++..+...|. ++.++ +..+.
T Consensus 51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v--~~~~~ 125 (366)
T PRK07582 51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA--PTAGM 125 (366)
T ss_pred ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE--CCCCh
Confidence 55566666666666 55677788887665555544456677888876544 333445555555554 23433 32221
Q ss_pred hHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCC-CCeEEEEeccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVK-VGGVIGYDNTL 192 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~-~gG~lv~d~~~ 192 (247)
.... ....++|++..+. ......++.+.++.+ .|.++++|++.
T Consensus 126 ~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 1111 2456888886542 112233455555444 46778888875
No 380
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.32 E-value=3.6 Score=37.23 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=55.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..++|+-+|+|. |......++.+ +++|+.+|.++.....|+. .|. +.. +.. +. -...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~------v~~a 258 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA------VKEG 258 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH------HcCC
Confidence 578999999874 44555555554 5689999999987766654 353 111 111 21 1357
Q ss_pred eEEEEcCCccchHHHHHHH-HhcCCCCeEEEEe
Q 025824 158 DFIFVDADKDNYLNYHKRL-IELVKVGGVIGYD 189 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~-~~~L~~gG~lv~d 189 (247)
|+||.-.. ....+... .+.+++||+++.-
T Consensus 259 DVVI~atG---~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTG---NKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCC---CHHHHHHHHHhcCCCCcEEEEe
Confidence 98875332 23455554 7899999999753
No 381
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.23 E-value=1.3 Score=38.22 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=53.2
Q ss_pred CEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE-Eecchhh-hHHHHhhhcCCCc
Q 025824 81 KNTMEIGVY--TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFR-EGPALPV-LDLLIQDEKNHGS 156 (247)
Q Consensus 81 ~~vLEiG~g--~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~-~gd~~~~-l~~l~~~~~~~~~ 156 (247)
.+|+-+|+| .|+.+..|+++ +..|+.++..++.++..++ ..|+ .+. .+..... .+....+ ..++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~--~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETAD--AAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcc--cccc
Confidence 468888876 23344445443 4579999987654443322 2232 111 0110000 0000000 1358
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
||+||+-.-..+....++.+.+.+.+++.++.
T Consensus 71 ~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 71 IHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred cCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 99999876655567788888899999987763
No 382
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=89.21 E-value=3.7 Score=35.62 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=55.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
.+..+||-.|+| .|..++.+++..+ ..++++++.+++....++ ..|...-+.....+..+.+..+. ....
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~----~~~~ 235 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLELT----DGRG 235 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHHh----CCCC
Confidence 445677666653 2334445666553 268888988887655554 34542223332223222222222 1356
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+|+|| |+. .....++.+.+.|+++|.++.
T Consensus 236 ~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 236 VDVVI-EAV--GIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCEEE-ECC--CCHHHHHHHHHhccCCcEEEE
Confidence 99886 443 123456778899999999985
No 383
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=89.19 E-value=14 Score=33.17 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+...++-..+|+......+...+.++.+|+..+..-. ............|+ ++.++...-.+
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 129 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA 129 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 3566777777888778888888877777766666555555667776654322 22223333333332 23333211122
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC-CCeEEEEecccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK-VGGVIGYDNTLWNG 195 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~-~gG~lv~d~~~~~g 195 (247)
.+.... ...-++|++..+ +......++.+.++.+ .|.++++|+++..+
T Consensus 130 ~l~~~i-----~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 130 ALDAAL-----AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred HHHHhc-----CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 233221 235689998644 2112222333333333 36778888886544
No 384
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=89.15 E-value=6.7 Score=35.30 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHHcCCCCcEEEEEecch-
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDI-NRENYELGLPVIQKAGVAHKIDFREGPAL- 141 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~g~~~~i~~~~gd~~- 141 (247)
+|....+=..++...+....+-.-||.+..+..+...+.++-+|+..+- -......+...+++.|+ .++++.....
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~d~~~~~ 139 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFVDPGDDE 139 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEECCCChH
Confidence 4555555566667777888999999999988877777766777776654 44455667777777664 2444332222
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCCC-eEEEEeccccc
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKVG-GVIGYDNTLWN 194 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~g-G~lv~d~~~~~ 194 (247)
+....+. ....++||+..+- .-...++..+.++-+.. -++++||++..
T Consensus 140 ~~~~~~~-----~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 140 ALEAAIK-----EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred HHHHHhc-----ccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 2333331 2478999998762 22233445555554543 67778998754
No 385
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=89.04 E-value=5 Score=35.82 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDIN-RENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+....+=+++|++.....+ ..+.++.+|+..+.. +.........+...|+ .+.++..+-.+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~e 125 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDLS 125 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCHH
Confidence 3566666666666666667777787776555444 345567788876642 2223334444555554 23333222223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... .....+|++..+ +......++.+.++.+. |..+++|++.-
T Consensus 126 ~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 126 QIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 333321 245688887544 11122234444444444 66777787753
No 386
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=89.01 E-value=1.7 Score=36.60 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHH
Q 025824 95 LATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHK 174 (247)
Q Consensus 95 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~ 174 (247)
..|.+.. ...+|+++|.+++.++.|.+ .|+.+ -...+ .+. -..+|+|++..+.......++
T Consensus 3 ~aL~~~g-~~~~v~g~d~~~~~~~~a~~----~g~~~---~~~~~-~~~----------~~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKAG-PDVEVYGYDRDPETLEAALE----LGIID---EASTD-IEA----------VEDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHTT-TTSEEEEE-SSHHHHHHHHH----TTSSS---EEESH-HHH----------GGCCSEEEE-S-HHHHHHHHH
T ss_pred HHHHhCC-CCeEEEEEeCCHHHHHHHHH----CCCee---eccCC-HhH----------hcCCCEEEEcCCHHHHHHHHH
Confidence 3444443 36899999999997766643 46533 22222 222 145699999888888889999
Q ss_pred HHHhcCCCCeEEE
Q 025824 175 RLIELVKVGGVIG 187 (247)
Q Consensus 175 ~~~~~L~~gG~lv 187 (247)
.+.+.+++|+++.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 9999898887665
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.91 E-value=7.5 Score=35.41 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE----ecchh----hhHHH
Q 025824 80 AKNTMEIG-VYTGYSLLA--TALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE----GPALP----VLDLL 147 (247)
Q Consensus 80 ~~~vLEiG-~g~G~st~~--la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~----gd~~~----~l~~l 147 (247)
+..|+=+| .|+|-+|.. ||..+. .+.+|..++.++... .|.+.++..+-...+.++. .|... .+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 44577777 678877654 444442 244677777766543 3333333222112244432 12211 22222
Q ss_pred HhhhcCCCceeEEEEcCCcc-----chHHHHHHHHhcCCCCeEEEEecc
Q 025824 148 IQDEKNHGSFDFIFVDADKD-----NYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~~-----~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
. ...||+||+|.... .....+..+.....|.=++++-|.
T Consensus 179 ~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 179 K-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred H-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 1 35799999998722 233444555567778766555443
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.85 E-value=5.5 Score=32.82 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=45.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHHcCCCCcEEEEEe
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINR-------------------ENYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
...+|+-+|||. |......+...+ -++++.+|.+. ..++.+.+.+++.+-.-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 467899999873 333333333333 46888886544 345566777776654334555554
Q ss_pred cch-hhhHHHHhhhcCCCceeEEEEcCC
Q 025824 139 PAL-PVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 139 d~~-~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
... +.+..+ -..+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL------IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH------HhCCCEEEEcCC
Confidence 442 222333 246999987655
No 389
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.82 E-value=4.5 Score=34.88 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=58.9
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE-ecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-gd~~~~l~~l~~~~~ 152 (247)
....+..+||-.|+| .|..++.+++... +.++++++.+++..+.++ ..|...-+.... .+..+.+..+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~v~~~----- 227 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAK----EVGADLTINSKRVEDVAKIIQEK----- 227 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHH----HcCCcEEecccccccHHHHHHHh-----
Confidence 334556788888853 3445556666532 578999999998766664 345421111111 1111222222
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+.+|.++++... ...++.+.+.|+++|.++.
T Consensus 228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 2358877776542 3457888899999999885
No 390
>PRK07050 cystathionine beta-lyase; Provisional
Probab=88.75 E-value=12 Score=33.65 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINREN-YELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+...++=..+|+......+...++++.+|++.+..-.. ...........|+ ++.++..+..+
T Consensus 64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~~~~ 141 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFYDPLIGA 141 (394)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEECCCCHH
Confidence 35666666777777777788877777777666555456667788887754433 2333444555564 34444221112
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWNG 195 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~g 195 (247)
.+.... ...-.+|++..+ .......++.+.++.+. |-.+++|+++..|
T Consensus 142 ~l~~~i-----~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 142 GIADLI-----QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 233332 234578887654 22344556666555554 5567778875433
No 391
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.71 E-value=6 Score=35.97 Aligned_cols=100 Identities=15% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCC-----------cEEEEEecchhhhHHH
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAH-----------KIDFREGPALPVLDLL 147 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~-----------~i~~~~gd~~~~l~~l 147 (247)
++.+|--|| .|+.+..+|..+..+.+|+++|++++.++... .|... .-.+...+..+.
T Consensus 5 ~~mkI~vIG--lGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~-----~G~~~~~e~~~~~l~~~g~l~~t~~~~~---- 73 (425)
T PRK15182 5 DEVKIAIIG--LGYVGLPLAVEFGKSRQVVGFDVNKKRILELK-----NGVDVNLETTEEELREARYLKFTSEIEK---- 73 (425)
T ss_pred CCCeEEEEC--cCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH-----CcCCCCCCCCHHHHHhhCCeeEEeCHHH----
Confidence 456777776 68888888887765679999999998776644 12110 001111111111
Q ss_pred HhhhcCCCceeEEEEcCCc----------cchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 148 IQDEKNHGSFDFIFVDADK----------DNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~----------~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
-...|++|+.-+. .......+.+.+.|++|.++|..-+..+|
T Consensus 74 ------~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 74 ------IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ------HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 1457888875431 11222234566889999888876665554
No 392
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=88.56 E-value=1.3 Score=36.68 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=42.1
Q ss_pred cccHHHH--HHHhhCC-CCCEEEEEeCCcchH--HHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEc
Q 025824 89 YTGYSLL--ATALALP-DDGKILAMDINRENY--ELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVD 163 (247)
Q Consensus 89 g~G~st~--~la~~~~-~~~~v~~iD~~~~~~--~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id 163 (247)
|.|-+|. .|+..+. .+.+|+.||-+|..- +.++.......+.+++.+...+-...+.....+- ....||+||+|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a-~~~~~d~VlvD 90 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAA-EASGFDFVLVD 90 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHH-HhcCCCEEEEe
Confidence 5555554 4555543 478999999998643 2322222222345667776655444443332111 12469999999
Q ss_pred CC
Q 025824 164 AD 165 (247)
Q Consensus 164 ~~ 165 (247)
..
T Consensus 91 le 92 (231)
T PF07015_consen 91 LE 92 (231)
T ss_pred CC
Confidence 53
No 393
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.49 E-value=5.2 Score=34.43 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=49.2
Q ss_pred EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 82 NTMEIGVY-TGYSLLATALALPDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 82 ~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
+||-+||| .|...+..+...+ -++++.+|.+.- .++.|.+.+.+.+-.-+++.+.++..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888876 3443333332222 468888887542 34566677766554345666666665
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCCccchHHHHHH
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKR 175 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~ 175 (247)
+....+ -.+||+|+...+......++..
T Consensus 80 ~~~~~f------~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred chhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence 543333 3689999875553223334443
No 394
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.36 E-value=0.43 Score=34.58 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=26.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE 115 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~ 115 (247)
++...+|||||.|....-|.+. +-+-.++|.-..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~R 91 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARRR 91 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccccc
Confidence 4567999999999987777654 556788888654
No 395
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.31 E-value=3.3 Score=37.08 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHHcCCCCc-EEEEEecchhhhHH
Q 025824 69 QFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINREN-YELGLPVIQKAGVAHK-IDFREGPALPVLDL 146 (247)
Q Consensus 69 ~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~-i~~~~gd~~~~l~~ 146 (247)
-+|..+.......+||-++=..|..+.+++..-+ +.+ .+.-. -...+.|+..+|+... ++++ +..+.+
T Consensus 34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~-- 103 (378)
T PRK15001 34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSI-GDSYISELATRENLRLNGIDESSVKFL--DSTADY-- 103 (378)
T ss_pred HHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----Cee-ehHHHHHHHHHHHHHHcCCCcccceee--cccccc--
Confidence 3444444332223799999999999999995322 222 12222 2456788888887543 5554 333333
Q ss_pred HHhhhcCCCceeEEEEcCCcc--chHHHHHHHHhcCCCCeEEEEe
Q 025824 147 LIQDEKNHGSFDFIFVDADKD--NYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~~~--~~~~~l~~~~~~L~~gG~lv~d 189 (247)
...+|+|++-.+|. .....+..+.+.|.||+.|++-
T Consensus 104 -------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 104 -------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred -------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 35699999988753 3445667777899999998753
No 396
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.30 E-value=7.2 Score=34.98 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=54.7
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHH------------HHHHcCCCCcEEEEEecchhhhHHHH
Q 025824 82 NTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLP------------VIQKAGVAHKIDFREGPALPVLDLLI 148 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~------------~~~~~g~~~~i~~~~gd~~~~l~~l~ 148 (247)
+|--+| +||.++..+..+.. +-.|+|+|++++.++..++ .+++.....|+++- .|..+.+
T Consensus 2 kI~viG--tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---- 74 (414)
T COG1004 2 KITVIG--TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---- 74 (414)
T ss_pred ceEEEC--CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----
Confidence 344566 56655543333221 3589999999988776432 33333222344442 2322221
Q ss_pred hhhcCCCceeEEEEcCC----------ccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 149 QDEKNHGSFDFIFVDAD----------KDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~----------~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
...|++|+.-. -+......+.+.+.++...++|+--+...|
T Consensus 75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 34688887432 122234555666788877788876555444
No 397
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.10 E-value=5.9 Score=34.51 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=57.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
..+..+||-.|+| .|..++.+++.. +. +|++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CC
Confidence 3456788877753 333445566664 45 89999988887766644 3542212222222222222221 12
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
..+|+|+-... ....++.+.+.|+++|.++.-.
T Consensus 240 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence 45998874322 1345677888999999988643
No 398
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=88.09 E-value=7 Score=34.60 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+...++=+++|+......+...+.++.+|++.+..-. .....+..+...|. ++.++..+-.+
T Consensus 39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~d~~ 116 (369)
T cd00614 39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFVDPDDPE 116 (369)
T ss_pred ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEeCCCCHH
Confidence 3556666666666666666776776665554444444555666666554332 22333344444453 34444333233
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
.+.... .....+|++... .......++.+.++.+. |..+++|++.
T Consensus 117 ~l~~~i-----~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 117 ALEAAI-----KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 333332 235678887654 12222234445444444 6677788875
No 399
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.02 E-value=2.1 Score=40.94 Aligned_cols=95 Identities=16% Similarity=0.019 Sum_probs=57.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 81 KNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
.+|+=+| .|..+..+++.+.. +..++.+|.|++.++.+++ .| ..++.||+.+. .-+.+.+ -+..|+
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag--i~~A~~ 467 (621)
T PRK03562 401 PRVIIAG--FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM-DLLESAG--AAKAEV 467 (621)
T ss_pred CcEEEEe--cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH-HHHHhcC--CCcCCE
Confidence 5777776 56666666665432 4589999999998877765 33 46889998653 2232222 457888
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+++-.+........-...+.+.|+-.+++
T Consensus 468 vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 88765432222222233345566655543
No 400
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.01 E-value=6.2 Score=34.28 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
..+..+||-.|+| .|..+..+++.. +.++++++.+++..+.+++ .|...-+. ..+. ..+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~---------~~~ 222 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT---------PPE 222 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc---------Ccc
Confidence 3456789988864 333445566664 5689999999886655544 66532111 1111 023
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
.+|+++..... ...+....+.|++||.+++-..
T Consensus 223 ~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 57876542221 2467788899999999987543
No 401
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.96 E-value=2.4 Score=40.39 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=58.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 81 KNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
.+|+=+| .|..+..+++.+. .+..++.+|.|++.++.+++ .| ..++.||+.+. .-+.+.+ -++.|.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag--i~~A~~ 467 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL-ELLRAAG--AEKAEA 467 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH-HHHHhcC--CccCCE
Confidence 4566655 6777777777653 35689999999998877654 34 46889998653 2232222 467888
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+++-.+........-...+.+.|...+++
T Consensus 468 vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 468 IVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 87765532222222233455667766664
No 402
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.92 E-value=5.3 Score=36.25 Aligned_cols=97 Identities=16% Similarity=0.072 Sum_probs=59.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 80 AKNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
.++|+=+|+ |..+..+++.+.. +..++.+|.+++.++..++.. ..+.++.||+.+. ..+... .-..+|
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~--~~~~a~ 299 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE--GIDEAD 299 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc--CCccCC
Confidence 467888885 7777777777643 578999999998776554432 2367889998643 223221 246789
Q ss_pred EEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 159 FIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 159 ~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
.|++-.+.....-....+.+.+.+.-+++
T Consensus 300 ~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 300 AFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred EEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 88875543222222233335555554444
No 403
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=87.88 E-value=6 Score=27.70 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=49.1
Q ss_pred EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCCCe
Q 025824 107 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKVGG 184 (247)
Q Consensus 107 v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~gG 184 (247)
|..+|-++...+..++.+...|+. .-....+..+.+..+. ...||+|++|.. ..+...+++.+...- ++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE--EVTTASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQIN-PSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE--EEEEESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHT-TTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccc-ccc
Confidence 467899999999999999976641 2224556656665553 457999999965 445567777776544 554
Q ss_pred EEE
Q 025824 185 VIG 187 (247)
Q Consensus 185 ~lv 187 (247)
.++
T Consensus 73 ~ii 75 (112)
T PF00072_consen 73 PII 75 (112)
T ss_dssp EEE
T ss_pred cEE
Confidence 444
No 404
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=87.83 E-value=7.5 Score=34.72 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+-..++...++..++=..+|++.....+...+.++.+|+..+..-. ............+. ++.+...+-.+.
T Consensus 51 p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~--~v~~~d~~d~~~ 128 (382)
T TIGR02080 51 PTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF--RVLFVDQGDEQA 128 (382)
T ss_pred chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--EEEEECCCCHHH
Confidence 555666666666666677775555555554444444555667776655443 23333333333222 233332221222
Q ss_pred hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC-CCeEEEEecccccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK-VGGVIGYDNTLWNG 195 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~-~gG~lv~d~~~~~g 195 (247)
+.... ....++|++..+ +......++.+.++.+ .|.++++|++...+
T Consensus 129 l~~ai-----~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 129 LRAAL-----AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred HHHhc-----CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 33221 234688887644 2122222344444333 36778888886433
No 405
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=87.73 E-value=4.9 Score=35.97 Aligned_cols=120 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecch--
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPAL-- 141 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~-- 141 (247)
+....+-..++...+.+..+-+++|+......+...+.++.+|++.+..-. ........+...| +++...+..
T Consensus 61 p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g----i~~~~~d~~d~ 136 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG----VEYTPVDLSDL 136 (388)
T ss_pred ccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC----eEEEEeCCCCH
Confidence 555666666666666666666776665544444444555677877654332 1222222222223 444444432
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
+.+.... .+...+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 137 e~l~~~i-----~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 137 DAVRAAI-----TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHHHhc-----CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 2222221 235678887654 22223344444444443 67788888753
No 406
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.73 E-value=5.7 Score=34.97 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe--cchhhhHHHHhhhc
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG--PALPVLDLLIQDEK 152 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g--d~~~~l~~l~~~~~ 152 (247)
...+..+||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 254 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---- 254 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh----
Confidence 34566788888853 2334445666553 2389999999987666543 564221211110 1112222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEecc
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDNT 191 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~~ 191 (247)
.+.+|++| |..- ....+......+++| |.++.-..
T Consensus 255 -~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence 23689775 4431 234566677888996 88876443
No 407
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=87.72 E-value=7.3 Score=34.91 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+.+..+=+++|+......+...+.++.+|++.+.... .....+..+...|. .+.++..+-.+
T Consensus 58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~e 135 (391)
T TIGR01328 58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIPE 135 (391)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 3556666677777777777777776665544444444555677777664322 22334444444553 23333332222
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWN 194 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~ 194 (247)
.+.... .....+|++..+ .......++.+.++.+. |..+++|++...
T Consensus 136 ~l~~~i-----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 136 EVKAHI-----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred HHHHhh-----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCch
Confidence 233221 235678887654 22222234444444433 667778888643
No 408
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.60 E-value=2.5 Score=39.82 Aligned_cols=95 Identities=9% Similarity=-0.011 Sum_probs=58.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 81 KNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
.+++=+| .|..+..+++.+.. +..++.+|.|++.++.+++ .| ...+.||+.+. ..+.+- .-++.|.
T Consensus 418 ~hiiI~G--~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~-~~L~~a--~i~~a~~ 484 (558)
T PRK10669 418 NHALLVG--YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANE-EIMQLA--HLDCARW 484 (558)
T ss_pred CCEEEEC--CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCH-HHHHhc--CccccCE
Confidence 4566665 67777888877643 4689999999997776654 23 57889998753 222211 2468897
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+++..+.......+-.+.+...|...++.
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 77654322222223333455567766664
No 409
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=87.51 E-value=7.4 Score=32.38 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEEecch
Q 025824 82 NTMEIGVY-TGYSLLATALALPDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
Q Consensus 82 ~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~gd~~ 141 (247)
+||-+|+| .|...+..+...+ -++++.+|.+.- ..+.+.+.+.+.+-.-+++.+..+..
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 47788865 3333332222222 468888887652 24455666666554335666666552
Q ss_pred ---hhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHH
Q 025824 142 ---PVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRL 176 (247)
Q Consensus 142 ---~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~ 176 (247)
+....+ -..||+|+.-.+......++...
T Consensus 80 ~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 80 PEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred hhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence 222222 36799998655533333444443
No 410
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.49 E-value=5.5 Score=29.73 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHHcCCCCcEEEEEec
Q 025824 80 AKNTMEIGVY-TGYSLLATALALPDDGKILAMDINR-------------------ENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 80 ~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
..+|+-+||| .|......+...+ -++++-+|.+. ...+.+++.+.+.+..-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 4689999986 4443333222222 46898888754 2356777888776544457777666
Q ss_pred c-hhhhHHHHhhhcCCCceeEEEEcCCc
Q 025824 140 A-LPVLDLLIQDEKNHGSFDFIFVDADK 166 (247)
Q Consensus 140 ~-~~~l~~l~~~~~~~~~fD~v~id~~~ 166 (247)
. .+....+ -..+|+||...+.
T Consensus 81 ~~~~~~~~~------~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 81 IDEENIEEL------LKDYDIVIDCVDS 102 (135)
T ss_dssp CSHHHHHHH------HHTSSEEEEESSS
T ss_pred ccccccccc------ccCCCEEEEecCC
Confidence 6 2334444 2478999865553
No 411
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.48 E-value=0.63 Score=36.47 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=29.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHH
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELG 120 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a 120 (247)
..+|.+|+-+|.| .|..+..++..+ +.+++.+|..++..+..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQL 59 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhh
Confidence 4578899999977 456667788887 48999999998755443
No 412
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.41 E-value=4 Score=34.98 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=49.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCCc
Q 025824 80 AKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHGS 156 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~~ 156 (247)
.++||-.| |+|+.+..+++.+- .+.+|+++..++.............+..++++++.+|..+. +..+ -..
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~~ 76 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VDG 76 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------HcC
Confidence 46788888 58999988887763 35688888877654332222222222235789999998653 3333 235
Q ss_pred eeEEEEcCC
Q 025824 157 FDFIFVDAD 165 (247)
Q Consensus 157 fD~v~id~~ 165 (247)
+|.||.-+.
T Consensus 77 ~d~Vih~A~ 85 (322)
T PLN02662 77 CEGVFHTAS 85 (322)
T ss_pred CCEEEEeCC
Confidence 798887553
No 413
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.38 E-value=1.5 Score=38.14 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=59.1
Q ss_pred CCCEEEEEcc-cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGV-YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~-g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+.++|--+|. |.|..++.+|+++ +.+|++||.+... -++.++..|.+.-+.+. .| .+.+..+ .+..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~k---keea~~~LGAd~fv~~~-~d-~d~~~~~------~~~~ 247 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKK---KEEAIKSLGADVFVDST-ED-PDIMKAI------MKTT 247 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchh---HHHHHHhcCcceeEEec-CC-HHHHHHH------HHhh
Confidence 4566644443 4788999999998 5899999999853 34556667765433333 12 1333333 2344
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
|.+..... .-....++.+..+||++|.+|+-.
T Consensus 248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred cCcceeee-eccccchHHHHHHhhcCCEEEEEe
Confidence 54432211 012334566778999999999643
No 414
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.34 E-value=9.7 Score=28.02 Aligned_cols=94 Identities=15% Similarity=0.033 Sum_probs=55.8
Q ss_pred HHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhh
Q 025824 72 NMLLKLVNAKNTMEIGVYTGY-SLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQD 150 (247)
Q Consensus 72 ~~l~~~~~~~~vLEiG~g~G~-st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~ 150 (247)
..++......+|+|+|.|.=. .+..|++. +..++++|+++.. ++ .-++++..|..+---.+
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~----------a~--~g~~~v~DDitnP~~~i--- 67 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT----------AP--EGLRFVVDDITNPNISI--- 67 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc----------Cc--ccceEEEccCCCccHHH---
Confidence 345556777899999966433 22233332 5899999999871 22 24788888886532222
Q ss_pred hcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEE
Q 025824 151 EKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVI 186 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~l 186 (247)
-...|+|..--+.......+-.+.+.++-.-+|
T Consensus 68 ---Y~~A~lIYSiRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 68 ---YEGADLIYSIRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred ---hhCccceeecCCCHHHHHHHHHHHHhhCCCEEE
Confidence 356788886544444444444444544444333
No 415
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.34 E-value=4.2 Score=36.86 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=56.5
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhh-----cCC
Q 025824 81 KNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDE-----KNH 154 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~-----~~~ 154 (247)
++|-=||.| +.+..+|..+. .+.+|+++|++++.++.. . .|. +.+...+..+.+......| ...
T Consensus 4 ~kI~VIGlG--~~G~~~A~~La~~G~~V~~~D~~~~~v~~l----~-~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLG--YIGLPTAAAFASRQKQVIGVDINQHAVDTI----N-RGE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcc--hhhHHHHHHHHhCCCEEEEEeCCHHHHHHH----H-CCC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 567778754 45555554432 256899999999876642 2 121 1222222222221111000 001
Q ss_pred CceeEEEEcCCc----------cchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 155 GSFDFIFVDADK----------DNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 155 ~~fD~v~id~~~----------~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
+..|+||+..+. ......++.+.+.+++|.+++..-+...|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 256899876553 23445567777889998888766554443
No 416
>PRK05968 hypothetical protein; Provisional
Probab=87.25 E-value=16 Score=32.66 Aligned_cols=123 Identities=17% Similarity=0.171 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|...++-..++...+....+=+++|+......+...+.++.+|+..+..-. ........+...|. ++.++..+-.+
T Consensus 62 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 139 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGV--EVDYVDGRDEE 139 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc--eEEEeCCCCHH
Confidence 3555566666666666666665666655443334334555677777765322 22333445555565 34444333223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCC-CeEEEEeccccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKV-GGVIGYDNTLWN 194 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~-gG~lv~d~~~~~ 194 (247)
.+... ..+..+|++..+. .-....++.+.++.+. |..+++|++...
T Consensus 140 ~l~~~------i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 140 AVAKA------LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred HHHHh------cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 33332 1345788876542 2223455666655554 556677886533
No 417
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.20 E-value=2.8 Score=37.62 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 025824 83 TMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLP 122 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~ 122 (247)
|--|| .|+.+..++..+..+-.|+++|++++.++..++
T Consensus 3 I~VIG--lGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISG--TGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEC--CCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 44455 566666655444435689999999998877655
No 418
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=87.17 E-value=3.5 Score=29.10 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=42.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
++|| +-||+|.+|-.++..+ ++.+++.|+ .+++...+..+.-. . ...+|+|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi--~~~v~a~~~~~~~~-~------~~~~Dvi 54 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGV--PVKIAAGSYGAAGE-K------LDDADVV 54 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCC--cEEEEEecHHHHHh-h------cCCCCEE
Confidence 4666 5578888777666543 566677777 37777777655422 2 3578999
Q ss_pred EEcCCccchHHHHHHHHhcCCC
Q 025824 161 FVDADKDNYLNYHKRLIELVKV 182 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~ 182 (247)
++....... ++.+.+...+
T Consensus 55 ll~pqi~~~---~~~i~~~~~~ 73 (95)
T TIGR00853 55 LLAPQVAYM---LPDLKKETDK 73 (95)
T ss_pred EECchHHHH---HHHHHHHhhh
Confidence 987654333 3444444433
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.15 E-value=9.3 Score=33.65 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHHcCCCCcEEEE
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINR---------------------ENYELGLPVIQKAGVAHKIDFR 136 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
...+||-+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 457899999873 333333222222 46999999873 2345566677665533345555
Q ss_pred Eecchh-hhHHHHhhhcCCCceeEEEEcCC
Q 025824 137 EGPALP-VLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 137 ~gd~~~-~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
..+... .+..+ -..+|+|+.-.+
T Consensus 102 ~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 102 VQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred eccCCHHHHHHH------HcCCCEEEEcCC
Confidence 555432 22233 257898876544
No 420
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.14 E-value=1 Score=31.37 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=51.6
Q ss_pred EEEEcccccHHHHHHHhhCC-CC---CEEE-EEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 83 TMEIGVYTGYSLLATALALP-DD---GKIL-AMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 83 vLEiG~g~G~st~~la~~~~-~~---~~v~-~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
|.=|| +|..+..|++.+- .+ .+|+ ..+.+++..+... ++.+ +.+...+..+.+. ..
T Consensus 2 I~iIG--~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~---~~~~----~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIG--AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELA---KEYG----VQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEES--TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHH---HHCT----TEEESEEHHHHHH----------HT
T ss_pred EEEEC--CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHH---Hhhc----cccccCChHHhhc----------cC
Confidence 34455 5666665555432 13 5888 4499998654433 3333 3444444444432 56
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+||+...+....+.++.+ +.+.++.+++
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 9999999888888888888 6677777765
No 421
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=87.05 E-value=1.5 Score=36.09 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=46.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
....-|.|||.|.|..|..+..+- -.++..+|.++.++.-.+-.-+.+ ..+..++++|+.-
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 345679999999999999998763 368999999999876554433322 2478888998764
No 422
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.01 E-value=12 Score=32.97 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+..+||-.|+| .|..++.+++.. +.++++++.+++... +..+..|.. .++.....+.+..+ .+.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~---~~~~~~Ga~---~vi~~~~~~~~~~~------~~~~ 248 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKED---EAINRLGAD---SFLVSTDPEKMKAA------IGTM 248 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhh---hHHHhCCCc---EEEcCCCHHHHHhh------cCCC
Confidence 45678778864 344555666665 468888888765332 222345542 12211111222222 2358
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
|+|| |..- ....++.+.+.|++||.++.-.
T Consensus 249 D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYII-DTVS--AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence 9887 4432 2345677889999999998543
No 423
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.91 E-value=2.6 Score=36.50 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=26.7
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+.+|+||+-.......+.++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 5799999876655566778888888999988763
No 424
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.81 E-value=3.7 Score=35.11 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.3
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..+|+||+-.........++.+.+.+.++.+|+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6799999987766678888888888888887763
No 425
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=86.74 E-value=11 Score=33.66 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+...++-..+|+......+...+.++.+|++-+... .........+...|. ++.++..+-.+
T Consensus 60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 137 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVDLTDLD 137 (390)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 455666666677777777776666555554444444455566777765433 233344455666665 35554333233
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC-CCeEEEEeccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK-VGGVIGYDNTL 192 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~-~gG~lv~d~~~ 192 (247)
.+.... ...-.+|++..+ .......++.+.++.+ .|..+++|++.
T Consensus 138 ~l~~~i-----~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 138 AWRAAV-----RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHhc-----CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 333332 234578887544 2222223444444444 36677788875
No 426
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.71 E-value=4 Score=34.51 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=32.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchH
Q 025824 79 NAKNTMEIGVYTGYSLLATALALP----DDGKILAMDINRENY 117 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~----~~~~v~~iD~~~~~~ 117 (247)
+...++|+|||.|..+.+++..++ +...++.||......
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 446899999999999999999884 257899999976544
No 427
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.61 E-value=3.6 Score=35.19 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=52.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 81 KNTMEIGVYTGYSLLATALALPD---DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+|+=+| .|..+-++++.+.. ...+++.|.+....+.+.+ .|+.+. ..+... ... ....
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~----~~~~~~--~~~------~~~a 65 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDE----LTVAGL--AEA------AAEA 65 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccc----cccchh--hhh------cccC
Confidence 4667777 56666666665542 3356677776654443322 333211 111100 111 3567
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+||+..+......+++++.+.|++|.++.
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 999998887788888888888888876664
No 428
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.38 E-value=0.98 Score=34.33 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=53.6
Q ss_pred EEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCC----C-cEEEEEecchhhhHHHHhhhcCCCce
Q 025824 84 MEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVA----H-KIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 84 LEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~-~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+-+| .|..+..+|..+. .+..|+.+...+ .++. ++..|+. . +..+........... ...+|
T Consensus 2 ~I~G--~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 68 (151)
T PF02558_consen 2 LIIG--AGAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSA------DAGPY 68 (151)
T ss_dssp EEES--TSHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGH------HHSTE
T ss_pred EEEC--cCHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchh------ccCCC
Confidence 4455 5566666665552 267899999887 4443 3333431 1 111111111111101 14789
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+||+-.......+.++.+.+.+.+++.+++
T Consensus 69 D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 69 DLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp SEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 9999987766778889999999999977764
No 429
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.34 E-value=9.4 Score=33.59 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=56.7
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe--cchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG--PALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g--d~~~~l~~l~~~~~~ 153 (247)
..+..+||-+|+| .|..++.+++... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence 3456788888863 3334455666653 2379999999887666643 454221221111 1122222221
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEec
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDN 190 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~ 190 (247)
...+|+|| |... ....+....+.++++ |.++.-.
T Consensus 252 ~~g~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 GGGVDYSF-ECTG--NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCCEEE-ECCC--ChHHHHHHHHhcccCCCEEEEEc
Confidence 24689886 4321 134567778889885 8887643
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.29 E-value=26 Score=31.90 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=41.8
Q ss_pred CEEEEEc-ccccHHHHH--HHhhC---CCCCEEEEEeCCcchH---HHHHHHHHHcCCCCcEEEEEe-cchhhhHHHHhh
Q 025824 81 KNTMEIG-VYTGYSLLA--TALAL---PDDGKILAMDINRENY---ELGLPVIQKAGVAHKIDFREG-PALPVLDLLIQD 150 (247)
Q Consensus 81 ~~vLEiG-~g~G~st~~--la~~~---~~~~~v~~iD~~~~~~---~~a~~~~~~~g~~~~i~~~~g-d~~~~l~~l~~~ 150 (247)
+.++=+| +|+|-+|.. ||..+ ..+.+|..++.++... +..+.+.+..++ .+... +..+....+. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~v----p~~~~~~~~~l~~~l~-~ 296 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----PVEVVYDPKELAKALE-Q 296 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCC----ceEccCCHHhHHHHHH-H
Confidence 4567777 778877653 33332 2246888888888543 333444444444 22222 2222222221 1
Q ss_pred hcCCCceeEEEEcCC
Q 025824 151 EKNHGSFDFIFVDAD 165 (247)
Q Consensus 151 ~~~~~~fD~v~id~~ 165 (247)
...+|+|++|..
T Consensus 297 ---~~~~DlVlIDt~ 308 (424)
T PRK05703 297 ---LRDCDVILIDTA 308 (424)
T ss_pred ---hCCCCEEEEeCC
Confidence 246999999976
No 431
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.26 E-value=5.7 Score=34.59 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEE--EecchhhhHHHHhh
Q 025824 74 LLKLVNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFR--EGPALPVLDLLIQD 150 (247)
Q Consensus 74 l~~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~--~gd~~~~l~~l~~~ 150 (247)
.+...+..++.-+|+|. |.+.+.-+++.. .+++++||++++..+.|++ .|..+-|+-. .....+.+.++-
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmT-- 259 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMT-- 259 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHh--
Confidence 34455677888888764 334444444443 6899999999998888766 4554322221 224555666552
Q ss_pred hcCCCceeEEEEcCCccchHHHHHHHHhcCCCC-eEEEEeccc
Q 025824 151 EKNHGSFDFIFVDADKDNYLNYHKRLIELVKVG-GVIGYDNTL 192 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~g-G~lv~d~~~ 192 (247)
++.+|+-|=-. ...+.+..++...++| |.-++-.+.
T Consensus 260 ---dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 260 ---DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred ---cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 57888887322 2245555565566676 665554443
No 432
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=86.23 E-value=6.2 Score=34.65 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=55.0
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+||-.|+| .|..++.+++.. +.+ +++++.+++..+.++ ..|.. .++..+..+....+.... ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~----~~g~~---~v~~~~~~~~~~~l~~~~-~~~ 255 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAK----ELGAT---HTVNAAKEDAVAAIREIT-GGR 255 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHH----HhCCc---eEecCCcccHHHHHHHHh-CCC
Confidence 455677766654 555566677765 345 889988877655443 34542 222222112212221111 135
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+|+|+ |..... .....+.+.|+++|.++.
T Consensus 256 ~~d~vl-d~vg~~--~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 256 GVDVVV-EALGKP--ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCCEEE-EeCCCH--HHHHHHHHHHhcCCEEEE
Confidence 699887 443221 356778889999999885
No 433
>PRK06460 hypothetical protein; Provisional
Probab=86.23 E-value=12 Score=33.23 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDIN-RENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|...++-..++...+....+-+++|.......+...+.++.+|+..+.. ..........++..|. ++.++..+..+.
T Consensus 45 p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--~v~~~~~~~~~~ 122 (376)
T PRK06460 45 PTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--NVDASNPGSDNI 122 (376)
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc--EEEEECCCCHHH
Confidence 4444444555555444444455555443333333334445666654321 1223333444555554 243332222223
Q ss_pred hHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
+..+. .....+|++..+ +......++.+.++.+. |.++++|++..
T Consensus 123 l~~~~-----~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~ 170 (376)
T PRK06460 123 IEKAK-----SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS 170 (376)
T ss_pred HHHhc-----CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence 33321 234577877654 11222223334443333 66777777753
No 434
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=86.22 E-value=13 Score=29.26 Aligned_cols=128 Identities=20% Similarity=0.109 Sum_probs=56.9
Q ss_pred cccccHHHHHHHhhCCCCCEEEEEeCCc----chHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEE
Q 025824 87 GVYTGYSLLATALALPDDGKILAMDINR----ENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFV 162 (247)
Q Consensus 87 G~g~G~st~~la~~~~~~~~v~~iD~~~----~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~i 162 (247)
|+|+|-|+....-+...+.+++-+.... ++.+...+..+.. ...+..... ...+.....+ ....|+|++
T Consensus 7 ~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R--~~~w~t~E~--~~~l~~~l~~---~~~~~~VLI 79 (169)
T cd00544 7 GARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRR--PAHWRTIET--PRDLVSALKE---LDPGDVVLI 79 (169)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhC--CCCceEeec--HHHHHHHHHh---cCCCCEEEE
Confidence 7888888775433222233555444433 3333333333322 233444332 1122222111 125788999
Q ss_pred cCC---------c------cchHHHHHHHHhcCCCC---eEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHHH
Q 025824 163 DAD---------K------DNYLNYHKRLIELVKVG---GVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALA 224 (247)
Q Consensus 163 d~~---------~------~~~~~~l~~~~~~L~~g---G~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (247)
|+- . ......+..+...|+.. -+++.+++.|.+. |.++.. +.+...+-.+|+.++
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~g~v---p~~~~~----r~f~d~lG~lnq~la 152 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVV---PENALG----RRFRDELGRLNQRLA 152 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCCCCC---CCCHHH----HHHHHHHHHHHHHHH
Confidence 863 1 11123333344444432 2444455555543 222222 444555566677766
Q ss_pred cCCC
Q 025824 225 ADPR 228 (247)
Q Consensus 225 ~~~~ 228 (247)
..-+
T Consensus 153 ~~ad 156 (169)
T cd00544 153 ALAD 156 (169)
T ss_pred HHCC
Confidence 5533
No 435
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.18 E-value=8 Score=32.69 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=58.5
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 77 LVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 77 ~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
..+..+||-.|+ +.|..++.+++.. +.+|+++..+++..+.+ ...|.. .+-....+..+.+..+ .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~----~~~g~~-~~~~~~~~~~~~i~~~------~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALL----KELGAD-EVVIDDGAIAEQLRAA------P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHH----HhcCCc-EEEecCccHHHHHHHh------C
Confidence 345678888885 5777777788875 57899998888755444 345542 2211111111222222 2
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
..+|+++ |.... ..+..+.+.|+++|.++.-
T Consensus 207 ~~~d~vl-~~~~~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVL-ELVGT---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCceEEE-ECCCh---HHHHHHHHHhccCCEEEEE
Confidence 4699887 44321 3567778899999998853
No 436
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=86.08 E-value=2.1 Score=28.98 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred cCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeC
Q 025824 78 VNAKNTMEIGVYTGYSL-LATALALPDDGKILAMDI 112 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st-~~la~~~~~~~~v~~iD~ 112 (247)
..|++||-||+-+||-. ..++.++.-++..+++-.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 56799999999999943 345655554666666644
No 437
>PRK07049 methionine gamma-lyase; Validated
Probab=85.95 E-value=13 Score=33.86 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH-HHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++.......++-+++|.......+...+.++.+|+..+..-... ..+...++..|.. .+.+..+.-.+
T Consensus 82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~-~v~~~~~~d~~ 160 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVG-AVGFADGLSEA 160 (427)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcE-EEEEeCCCCHH
Confidence 355566666777776777788888887766655655566567777766544333 3345556666752 24443222122
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cch---HHHHHHHHhcCC----CCeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNY---LNYHKRLIELVK----VGGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~---~~~l~~~~~~L~----~gG~lv~d~~~~ 193 (247)
.+.....+--......+||+..+. ... .+.+..+.+..+ .|-++++||++.
T Consensus 161 ~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 161 AIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred HHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 232221100001356789887541 111 223333333321 355777899853
No 438
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.85 E-value=6 Score=34.31 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=56.7
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecc---hhhhHHHHhh
Q 025824 76 KLVNAKNTMEIGVYT-GYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPA---LPVLDLLIQD 150 (247)
Q Consensus 76 ~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~---~~~l~~l~~~ 150 (247)
...+..+||-.|+|. |..++.+++.. +.+ ++.++.+++..+.+++ .|...-+.....+. .+.+..+.
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~-- 230 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL-- 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh--
Confidence 345567787777653 56666777775 345 8889888876655544 34322112111121 11122221
Q ss_pred hcCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 151 EKNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 151 ~~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+||-.... ...+....+.|+++|.++.
T Consensus 231 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 231 --GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred --CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 13469988743321 2356777889999999885
No 439
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=85.65 E-value=7.6 Score=32.59 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=58.2
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
....+..+||-.|+ +.|..+..+++.+ +.++++++.+++..+.+ ...|.. .++..........+....
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~----~~~g~~---~~~~~~~~~~~~~~~~~~- 201 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELA----RAAGAD---HVINYRDEDFVERVREIT- 201 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHH----HHCCCC---EEEeCCchhHHHHHHHHc-
Confidence 33445678888884 4666777777776 57899998888765554 334542 222222112211221111
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+++- .... .....+.+.|+++|.++.
T Consensus 202 ~~~~~d~vl~-~~~~---~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 GGRGVDVVYD-GVGK---DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CCCCeeEEEE-CCCc---HhHHHHHHhhccCcEEEE
Confidence 1346998874 3221 345667788999998884
No 440
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=85.63 E-value=12 Score=34.15 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+....+=+.+|+....+.+...+.++.+|++.+..-. ........+.+.|. ++.++..+-.+
T Consensus 63 ~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd~~d~~ 140 (433)
T PRK08134 63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGI--ETTFVKPGDID 140 (433)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 4666777777777767666644554444443333333555678888776433 23333444555564 34444333223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... ...-.+|++.... ......++.+.++.+. |-.+++|++..
T Consensus 141 ~l~~~i-----~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a 189 (433)
T PRK08134 141 GWRAAI-----RPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFT 189 (433)
T ss_pred HHHHhc-----CCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 333332 2445778776542 1122345555555554 55677787764
No 441
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=85.62 E-value=4.5 Score=34.11 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=51.6
Q ss_pred CCCEEEEEcccccH----HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 79 NAKNTMEIGVYTGY----SLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 79 ~~~~vLEiG~g~G~----st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
...+||-+|.|+-- -+.-|-+.+|.++.++-.|+.+- .. +--..+.+|.....+ .
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vS-----Da~~~~~~Dc~t~~~--------~ 119 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VS-----DADQSIVGDCRTYMP--------P 119 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B------SSSEEEES-GGGEEE--------S
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------cc-----ccCCceeccccccCC--------C
Confidence 35699999987432 45567778898899999999764 12 223456788876654 5
Q ss_pred CceeEEEEcCC-------------ccchHHHH-HHHHhcCCCCeEEEEe
Q 025824 155 GSFDFIFVDAD-------------KDNYLNYH-KRLIELVKVGGVIGYD 189 (247)
Q Consensus 155 ~~fD~v~id~~-------------~~~~~~~l-~~~~~~L~~gG~lv~d 189 (247)
.++|+||.|.- ++..-.++ ..+...|+-||.+++.
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 79999998753 12222333 4445789999999874
No 442
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.53 E-value=19 Score=31.16 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=53.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALP--DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
....+|+-+|+ |..+..++..+. ...+|+.++.+++... +.....|. .... ..+ +... -.
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~---~la~~~g~----~~~~--~~~-~~~~------l~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGG----NAVP--LDE-LLEL------LN 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcCC----eEEe--HHH-HHHH------Hh
Confidence 35789999986 555555544432 1357999999876432 22333342 2221 112 2222 24
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEeccc
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTL 192 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~ 192 (247)
..|+||.-.....+...+....+....++.+++|-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 5899998766444434444444444346788887554
No 443
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.53 E-value=6.2 Score=34.74 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=56.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe---cchhhhHHHHhhhc
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG---PALPVLDLLIQDEK 152 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---d~~~~l~~l~~~~~ 152 (247)
..+..+||-.|+| .|..++.++++.+ ..++++++.+++..+.+++ .|.. .++.. +..+.+..+.
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~---- 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT---- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh----
Confidence 3456788888764 3556666777764 2379999999876655543 4431 22221 1222222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
...+|+|+--... ...+..+.+.|+++|.++.
T Consensus 252 -~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 252 -GGGVDYALDTTGV---PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred -CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEE
Confidence 2468988632221 2356777888999999885
No 444
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.46 E-value=7.6 Score=33.12 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=54.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHc--------CCC---------CcEEEEEecchhh
Q 025824 81 KNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKA--------GVA---------HKIDFREGPALPV 143 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------g~~---------~~i~~~~gd~~~~ 143 (247)
++|.-||+|.=..++...-+. .+.+|+.+|.+++.++.+++.++.. .+. .++++. .|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~--- 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDL--- 78 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCH---
Confidence 578888876433333322222 2568999999999888777654321 110 123321 222
Q ss_pred hHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCCCeEEE
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~gG~lv 187 (247)
... -...|+|+.-.+. ......++.+.+.++++.+|+
T Consensus 79 -~~a------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 79 -AEA------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred -HHH------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 111 2456988876652 234566777778887777654
No 445
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.32 E-value=9 Score=34.30 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=72.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH-------HHHcCC-CCcEEEEEecchh--hhHH
Q 025824 77 LVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPV-------IQKAGV-AHKIDFREGPALP--VLDL 146 (247)
Q Consensus 77 ~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~-------~~~~g~-~~~i~~~~gd~~~--~l~~ 146 (247)
..+.....|+|+|.|-.....+.... ..+-+|+|+.....+.|..+ .+.+|- ...++.++|+..+ ....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 34566789999999998777665543 45678999887766555432 233444 3468888998764 2333
Q ss_pred HHhhhcCCCceeEEEEcCCccc--hHHHHHHHHhcCCCCeEEEEeccccc
Q 025824 147 LIQDEKNHGSFDFIFVDADKDN--YLNYHKRLIELVKVGGVIGYDNTLWN 194 (247)
Q Consensus 147 l~~~~~~~~~fD~v~id~~~~~--~~~~l~~~~~~L~~gG~lv~d~~~~~ 194 (247)
+ ....++||+....-+ ..--++.++..+++|..|+-.+-+..
T Consensus 269 I------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 269 I------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred H------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 3 457889998765221 22223467778899999997666543
No 446
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.24 E-value=13 Score=32.04 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=56.8
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGVYT-GYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
+...+..+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+ ...|...-+...... .+.+..+.
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l----~~~g~~~~~~~~~~~-~~~~~~~~---- 223 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVA----RELGADDTINPKEED-VEKVRELT---- 223 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHH----HHcCCCEEecCcccc-HHHHHHHh----
Confidence 3344566888888654 56666777775 344 88888887654443 344542111111111 22222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
....+|++|-... ....+..+.+.|+++|.++.-
T Consensus 224 ~~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 EGRGADLVIEAAG---SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 1345998874321 134567778899999998753
No 447
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=4.1 Score=34.24 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-----------CCEEEEEeCCcchHHH-------------HHHHHHH--------
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPD-----------DGKILAMDINRENYEL-------------GLPVIQK-------- 126 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~-----------~~~v~~iD~~~~~~~~-------------a~~~~~~-------- 126 (247)
+.-.|+|+|-|+|...+.+-+..+. .-++++++.+|-.... +......
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 3457899999999977765554431 2368899988743221 1111110
Q ss_pred -----cCCCCcEEEEEecchhhhHHHHhhhcCCCceeEEEEcCCc--c----chHHHHHHHHhcCCCCeEEEE
Q 025824 127 -----AGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADK--D----NYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 127 -----~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v~id~~~--~----~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.| .-...++.||+.+.++..... .+.+|..|.|+.. . -..+.+..+.+..++||.+.-
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence 12 135677899998887765110 1179999999761 1 224678888899999999974
No 448
>PLN02256 arogenate dehydrogenase
Probab=85.19 E-value=11 Score=32.73 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=53.7
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHh
Q 025824 71 LNMLLKLVNAKNTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 71 l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~ 149 (247)
+...+...+..+|.=||+ |..+..++..+.. +.+|+++|.++. .+ .....|. .. ..+. ..+.
T Consensus 27 ~~~~~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~----~a~~~gv----~~-~~~~----~e~~- 89 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SD----IAAELGV----SF-FRDP----DDFC- 89 (304)
T ss_pred HhHhhccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HH----HHHHcCC----ee-eCCH----HHHh-
Confidence 333334445678888885 5555555555432 358999998863 22 2223343 21 1222 1211
Q ss_pred hhcCCCceeEEEEcCCccchHHHHHHH-HhcCCCCeEE
Q 025824 150 DEKNHGSFDFIFVDADKDNYLNYHKRL-IELVKVGGVI 186 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~~~~~~~~l~~~-~~~L~~gG~l 186 (247)
....|+||+..+.......++.+ ...++++.++
T Consensus 90 ----~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 90 ----EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ----hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence 13579999877766666777776 4667777644
No 449
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.19 E-value=7.2 Score=34.95 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=57.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe---cchhhhHHHHhhhc
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG---PALPVLDLLIQDEK 152 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---d~~~~l~~l~~~~~ 152 (247)
..+..+||-.|+| .|..++.+++... ...++++|.+++..+.+++ .|. + .+... +..+.+..+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~---- 250 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQIL---- 250 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHc----
Confidence 3455677667664 3444455666653 2346677888876666655 464 2 22221 2222222221
Q ss_pred CCCceeEEEEcCCcc-----------chHHHHHHHHhcCCCCeEEEEecc
Q 025824 153 NHGSFDFIFVDADKD-----------NYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 153 ~~~~fD~v~id~~~~-----------~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
....+|+||--.... .....++.+...+++||.+++-.+
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 124689886322211 112468888899999999997554
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.92 E-value=19 Score=32.83 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCEEEEEcc-cccHHHH--HHHhhCC---CCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEe----cchhhhHHHH
Q 025824 80 AKNTMEIGV-YTGYSLL--ATALALP---DDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREG----PALPVLDLLI 148 (247)
Q Consensus 80 ~~~vLEiG~-g~G~st~--~la~~~~---~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~g----d~~~~l~~l~ 148 (247)
|..|+=+|- |+|-.|. -||..+. ...-++++|+.. .+++..+....+.++ .|+.. |..+....-.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHHH
Confidence 556788875 3444332 2444332 234578888854 445666666666654 34322 2222211111
Q ss_pred hhhcCCCceeEEEEcCC-----ccchHHHHHHHHhcCCCCeEEEEecccccccccCCCCCcchhhhchHHHHHHHHHHHH
Q 025824 149 QDEKNHGSFDFIFVDAD-----KDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKAL 223 (247)
Q Consensus 149 ~~~~~~~~fD~v~id~~-----~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (247)
+. ...+.||+|++|.. .+...+-+..+...++|.=+|++-|.... +......+.|++.+
T Consensus 176 ~~-ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------------QdA~~~A~aF~e~l 239 (451)
T COG0541 176 EK-AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------------QDAVNTAKAFNEAL 239 (451)
T ss_pred HH-HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------------hHHHHHHHHHhhhc
Confidence 10 02467999999976 23344556677789999988777665432 23345567888776
No 451
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=84.87 E-value=14 Score=32.86 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHHcCCCCcEEEEEecchhh
Q 025824 65 ADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINREN-YELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
Q Consensus 65 ~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~i~~~~gd~~~~ 143 (247)
|....+-..++...+...++-+++|+......+. .+.++.+|+..+..-.. ....+..+...|. ++.++..+-.+.
T Consensus 47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~~~ 123 (378)
T TIGR01329 47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGV--VVVHVDTTDLDK 123 (378)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCc--EEEEeCCCCHHH
Confidence 4555666666666666777777777665444333 45556677776543322 2233344455564 344443222233
Q ss_pred hHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCC-CCeEEEEeccccc
Q 025824 144 LDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVK-VGGVIGYDNTLWN 194 (247)
Q Consensus 144 l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~-~gG~lv~d~~~~~ 194 (247)
+.... .....+|++..+. ......++.+.++.+ .|..+++|++...
T Consensus 124 le~~i-----~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 124 VKAAL-----GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred HHHhc-----CcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 33321 2456788876541 112223444444333 3667777887533
No 452
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=84.75 E-value=9.7 Score=32.81 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe---cchhhhHHHHhhh
Q 025824 77 LVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG---PALPVLDLLIQDE 151 (247)
Q Consensus 77 ~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---d~~~~l~~l~~~~ 151 (247)
..+..+||-.|+ +.|..++.++++. +.+++++..+++..+..++.++..|...-+..... +..+.+..+.
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~--- 218 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP--- 218 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc---
Confidence 345678888774 5666777788776 45666555444222223344444554221111111 2222222221
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+.+|+|+ |..-. ..+..+.+.|+++|.++.
T Consensus 219 --~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 219 --GGRPKLAL-NCVGG---KSATELARLLSPGGTMVT 249 (341)
T ss_pred --CCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEE
Confidence 22699887 44322 223456788999999885
No 453
>PLN02494 adenosylhomocysteinase
Probab=84.69 E-value=6.7 Score=36.13 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=51.5
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
...++|+-+|+| .|......++.+ +.+|+.+|.++.....+. ..|. .+. +..+.+ ..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~----~~G~----~vv--~leEal----------~~ 309 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQAL----MEGY----QVL--TLEDVV----------SE 309 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHH----hcCC----eec--cHHHHH----------hh
Confidence 346899999977 333334444444 579999999987543332 2233 121 222221 35
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.|+|+......+ -.....+..+++||+|+.
T Consensus 310 ADVVI~tTGt~~--vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 310 ADIFVTTTGNKD--IIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred CCEEEECCCCcc--chHHHHHhcCCCCCEEEE
Confidence 798887433221 123667789999999985
No 454
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.67 E-value=15 Score=30.60 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEEe
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
...+|+-+||| .|......+...+ -++++.+|.+.- .++.+++.+.+.+-.-+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 56789999986 3443333333332 468888877542 34455666666543334555544
Q ss_pred cchh-hhHHHHhhhcCCCceeEEEEcCC
Q 025824 139 PALP-VLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 139 d~~~-~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
...+ .+..+ -..||+|+.-.+
T Consensus 110 ~i~~~~~~~~------~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAAL------IAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHHH------HhcCCEEEecCC
Confidence 4322 12222 257998886555
No 455
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=84.61 E-value=15 Score=32.67 Aligned_cols=122 Identities=15% Similarity=0.174 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
++....+-..++...+...++=.++|+......+...+.++.+|+...... .........+...|. ++.++..+-.+
T Consensus 53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~--~v~~v~~~d~~ 130 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI--EVSFVDPTDLN 130 (380)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC--EEEEECCCCHH
Confidence 355566666666666666666566665554444433345566777654322 222334455566665 34444333223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCCc--cchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDADK--DNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~~--~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
.+.... .....+|++..+. ......++.+.++.+. |..+++|++.
T Consensus 131 ~l~~~i-----~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 131 AWEAAV-----KPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 333221 2345788876441 1122234444444444 6677788875
No 456
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.55 E-value=14 Score=32.34 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchh---hhHHHHhhhcC
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP---VLDLLIQDEKN 153 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~---~l~~l~~~~~~ 153 (247)
+..+||-.|+| .|..++.+++.+ +. +|++++.+++..+.+ +..|...-+.....+..+ .+..+. .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~----~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELA----REFGADATIDIDELPDPQRRAIVRDIT----G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence 55678777753 233445566665 45 899999888765544 345552211111111111 122221 1
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
...+|+||-.... ...+....+.|+++|.++.-
T Consensus 247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 3569988743221 34567778899999999853
No 457
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.51 E-value=9.5 Score=34.59 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=57.3
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 82 NTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
+|+-+|+ |..+..+++.+. .+..++.+|.+++.++.+++. . .++++.||+.+. ..+... .-..+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~-~~l~~~--~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSP-DVLREA--GAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCH-HHHHHc--CCCcCCEE
Confidence 5777774 888888888764 356899999999876655431 2 367888988643 222211 13578988
Q ss_pred EEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 161 FVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
++..........+....+.+.|.-.++
T Consensus 70 i~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 70 IAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred EEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 876553333333444445554443333
No 458
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.45 E-value=5.3 Score=33.97 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=50.3
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 82 NTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
+|.=||+ |..+..++..+. .+.+|+++|.+++.++.+.+ .|. +.....+ ... -...|+|
T Consensus 2 ~I~IIG~--G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~----~~~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTD----LSL-------LKDCDLV 61 (279)
T ss_pred eEEEEee--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCC----HhH-------hcCCCEE
Confidence 4556674 455555554442 24689999999876655433 232 1111111 111 2457999
Q ss_pred EEcCCccchHHHHHHHHhcCCCCeEE
Q 025824 161 FVDADKDNYLNYHKRLIELVKVGGVI 186 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~gG~l 186 (247)
|+-.+.....+.++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 98887666677778887888776544
No 459
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.43 E-value=6.6 Score=30.78 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=57.3
Q ss_pred EcccccHHHHHHHhhCCCCCEEEEE--eCCcchHH---HHHHHHHHcCCCCcEEEEE-ecchhhhHHHHhhhcCCCceeE
Q 025824 86 IGVYTGYSLLATALALPDDGKILAM--DINRENYE---LGLPVIQKAGVAHKIDFRE-GPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 86 iG~g~G~st~~la~~~~~~~~v~~i--D~~~~~~~---~a~~~~~~~g~~~~i~~~~-gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+|=|.=..+..|++..+....+++. |...+..+ .+.++++...- ..++++. -|+.+.-..... ....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~---~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRL---KNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccc---cCCcCCE
Confidence 5656666777888876644555555 44443332 23455554421 2244433 355433222100 2578999
Q ss_pred EEEcCCccc----------------hHHHHHHHHhcCCCCeEEEEe
Q 025824 160 IFVDADKDN----------------YLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 160 v~id~~~~~----------------~~~~l~~~~~~L~~gG~lv~d 189 (247)
|+...++.. ...+|..+.++|+++|.|.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 988766322 235677778999999999874
No 460
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=84.39 E-value=20 Score=32.61 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+....+=+++|+......+...+.++.+|+..+..-. ........+...|. .+.++..+-.+
T Consensus 57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d~~d~e 134 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAAHDDIA 134 (425)
T ss_pred CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEECCCCHH
Confidence 3556667777777666667776776665555555444555677877664322 22222222222332 23333322223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... .....+|++..+ +......++.+.++.+. |-.+++|++..
T Consensus 135 ~le~ai-----~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 135 ALEALI-----DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred HHHHHh-----ccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333332 234578887643 11111123334333333 56677788764
No 461
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=84.38 E-value=18 Score=33.09 Aligned_cols=124 Identities=11% Similarity=0.022 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH-HHHHHHHHHcCCCCcEEEEE-ecch
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFRE-GPAL 141 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~-gd~~ 141 (247)
+|....+=..++...+....+=.++|+......+...++++.+|++.+..-... ....+.+.+.|+ .+.++. .+-.
T Consensus 68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd~~~d~ 145 (437)
T PRK05613 68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGI--EVTFVENPDDP 145 (437)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCe--EEEEECCCCCH
Confidence 455666666666666777788888777665554544456677888775433322 334455666665 355543 1112
Q ss_pred hhhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccccc
Q 025824 142 PVLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLWN 194 (247)
Q Consensus 142 ~~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~~ 194 (247)
+.+.... .....+|++... .......++.+.++.+. |-.+++|++.-.
T Consensus 146 e~l~~~l-----~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~ 196 (437)
T PRK05613 146 ESWQAAV-----QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIAT 196 (437)
T ss_pred HHHHHhC-----CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcc
Confidence 2233221 234567776543 11123344555544444 556777877533
No 462
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.37 E-value=6.6 Score=33.94 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=55.5
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNH 154 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~ 154 (247)
......+||-.|+| .|..+..++++. +.+++.++.+++..+.++ ..|.. .++...-.+....+.. .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~---~~i~~~~~~~~~~~~~----~ 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLAR----KLGAH---HYIDTSKEDVAEALQE----L 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HcCCc---EEecCCCccHHHHHHh----c
Confidence 34456788888853 344445566665 468999999887665553 34542 1221111122222211 1
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 155 GSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 155 ~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
..+|+++ |.. .....+....+.|+++|.++.
T Consensus 227 ~~~d~vi-~~~--g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 227 GGAKLIL-ATA--PNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CCCCEEE-ECC--CchHHHHHHHHHcccCCEEEE
Confidence 3589887 332 123466778889999999885
No 463
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=84.35 E-value=10 Score=34.63 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+....+=.++|++.....+...+.++.+|++.+..- .........+.+.|. .+.++. +. .
T Consensus 68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd-d~-~ 143 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGI--EVSFVE-DP-D 143 (436)
T ss_pred CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeE--EEEEEC-CC-C
Confidence 466666777777777777888888888876666655566577777665321 112223333444443 344432 22 1
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEeccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTL 192 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~ 192 (247)
.+..+.+.- ...-.+|++... .......++.+.++.+. |-.+++|++.
T Consensus 144 d~e~l~~ai--~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 144 DLDAWRAAV--RPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CHHHHHHhC--CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 222221110 234568887654 22233344555554444 4567778865
No 464
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.30 E-value=6.4 Score=33.97 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=55.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
+..+||-.|+|. |..++.+++.+ +. ++++++.+++..+.+++ .+.. .++..+... +..+.. ....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~ 231 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGD 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCC
Confidence 567888888664 55666777765 34 78999988876654433 3432 122111111 222211 1245
Q ss_pred eeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 157 FDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
+|+++--... ...++...+.|+++|.++.
T Consensus 232 vd~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 232 FDVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ccEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 9988743321 3456778899999999885
No 465
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.22 E-value=13 Score=31.69 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=53.0
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCC---CcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 82 NTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
+|.=||+| ..+..++..+. .+.+|+.++.+++.++..+ ..|+. ..... .......... ...+
T Consensus 2 ~I~IiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAG--AIGGLFGAALAQAGHDVTLVARRGAHLDALN----ENGLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECChHHHHHHH----HcCCcccCCceee-cccCCCChhH-------cCCC
Confidence 57778865 44444444332 2468999998776554433 23431 11110 0001111111 2579
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
|+||+-.........++.+.+.+.++..|+.
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 9999987766678888888888888876653
No 466
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.13 E-value=15 Score=29.60 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEE
Q 025824 79 NAKNTMEIGVYTGYSLLATALAL--PDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFRE 137 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~--~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~ 137 (247)
...+|+-+|||. .+..+++.+ ..-++++.+|.+.- ..+.+.+.+++.+-.-+++...
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 457899999764 333333332 21368999987632 2455666777665433455554
Q ss_pred ecchhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHHH
Q 025824 138 GPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLI 177 (247)
Q Consensus 138 gd~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~~ 177 (247)
....+..+.+ -..||+|+...+.......+..+.
T Consensus 98 ~~~~~~~~~~------~~~~dvVi~~~~~~~~~~~ln~~c 131 (197)
T cd01492 98 DDISEKPEEF------FSQFDVVVATELSRAELVKINELC 131 (197)
T ss_pred cCccccHHHH------HhCCCEEEECCCCHHHHHHHHHHH
Confidence 4443333333 357999987654333333344443
No 467
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.12 E-value=12 Score=34.70 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=54.2
Q ss_pred EEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHH---HcCCC--------CcEEEEEecchhhhHHH
Q 025824 82 NTMEIGVYTGYSLLATALALP---DDGKILAMDINRENYELGLPVIQ---KAGVA--------HKIDFREGPALPVLDLL 147 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~---~~g~~--------~~i~~~~gd~~~~l~~l 147 (247)
+|.-||+ |+.++.+|..+. .+.+|+++|++++.++..++-.. ..++. .++++ ..|..+.
T Consensus 3 ~I~ViG~--GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~---- 75 (473)
T PLN02353 3 KICCIGA--GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH---- 75 (473)
T ss_pred EEEEECC--CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH----
Confidence 5677775 555555444433 24679999999998766433110 00110 01111 1111111
Q ss_pred HhhhcCCCceeEEEEcCC--c-------------cchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 148 IQDEKNHGSFDFIFVDAD--K-------------DNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~--~-------------~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
-...|++|+.-+ . .......+.+.+.|++|-+++..-+...|
T Consensus 76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 135688876422 1 12345566677889998888877666655
No 468
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.97 E-value=22 Score=32.43 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
..++|+-+|+|. |......++.+ +.+|+.+|+++.....+.. .|. ++. +. ... -...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l----~ea------l~~a 268 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TM----EEA------AELG 268 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CH----HHH------HhCC
Confidence 578999999763 32333344444 5799999999875433322 232 221 22 222 1368
Q ss_pred eEEEEcCCccchHHHHH-HHHhcCCCCeEEEE
Q 025824 158 DFIFVDADKDNYLNYHK-RLIELVKVGGVIGY 188 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~-~~~~~L~~gG~lv~ 188 (247)
|+||.... ....++ .....+|+|++++.
T Consensus 269 DVVI~aTG---~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 269 DIFVTATG---NKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred CEEEECCC---CHHHHHHHHHhcCCCCCEEEE
Confidence 98876432 234454 56788999998875
No 469
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.87 E-value=7.5 Score=33.40 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhhcCCCc
Q 025824 80 AKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDEKNHGS 156 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~~~~~~ 156 (247)
.++||-.| |+|+.+..+++.+- .+.+|+++..++.............+...+++++.+|..+. +..+. ..
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~------~~ 77 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI------DG 77 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH------cC
Confidence 47889888 67888888887653 35688887777654433322222223335688999988653 23331 35
Q ss_pred eeEEEEcC
Q 025824 157 FDFIFVDA 164 (247)
Q Consensus 157 fD~v~id~ 164 (247)
+|.||..+
T Consensus 78 ~d~vih~A 85 (325)
T PLN02989 78 CETVFHTA 85 (325)
T ss_pred CCEEEEeC
Confidence 79887654
No 470
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=83.78 E-value=19 Score=31.13 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=54.3
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+||-.|+| .|..++.+++.. +.+ |++++.+++..+.++ ..|...-+.....+..+.+..+. ...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~l~~~~----~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDVVKEVADLT----DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCHHHHHHHhc----CCC
Confidence 345666666654 445556677765 454 888877776554443 34542112222223323232221 135
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+|+|+-.... ...+..+.+.|+++|.++.-
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 69988753221 24567778889999988753
No 471
>PRK08655 prephenate dehydrogenase; Provisional
Probab=83.62 E-value=6.7 Score=35.80 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=49.5
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeEE
Q 025824 82 NTMEIGVYTGYSLLATALALPD-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFI 160 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~v 160 (247)
+|.=|| |.|..+.+++..+.. +.+|++++.+++... +.....|. .+ ..+.. .. -...|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~---~~a~~~gv----~~-~~~~~----e~------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGK---EVAKELGV----EY-ANDNI----DA------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHH---HHHHHcCC----ee-ccCHH----HH------hccCCEE
Confidence 466676 345566666655432 458999998876532 22222332 11 11211 11 2456888
Q ss_pred EEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 161 FVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 161 ~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
|+..+.......++.+.+.+++|.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 887766556667777777777776544
No 472
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.61 E-value=7.7 Score=36.65 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=52.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHHc-----CC--CCcEEEEEecchhhhHHHHh
Q 025824 78 VNAKNTMEIGVYTGYSLLATALAL-PDDGKILAMDINRENYELGLPVIQKA-----GV--AHKIDFREGPALPVLDLLIQ 149 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-----g~--~~~i~~~~gd~~~~l~~l~~ 149 (247)
...++||-+| |+|+.+..+++.+ ..+.+|+++..+.+.+....+.+... |. ..+++++.+|..+.- .+..
T Consensus 78 ~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-sI~~ 155 (576)
T PLN03209 78 KDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-QIGP 155 (576)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH-HHHH
Confidence 3566788888 4677888877765 34678999999887665444433321 21 136889999987532 2211
Q ss_pred hhcCCCceeEEEEcCC
Q 025824 150 DEKNHGSFDFIFVDAD 165 (247)
Q Consensus 150 ~~~~~~~fD~v~id~~ 165 (247)
. -+..|+||....
T Consensus 156 a---LggiDiVVn~AG 168 (576)
T PLN03209 156 A---LGNASVVICCIG 168 (576)
T ss_pred H---hcCCCEEEEccc
Confidence 0 256898887643
No 473
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.58 E-value=10 Score=34.36 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=51.8
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVYT-GYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
...++|+-+|+|. |......++.+ +++|+.+|.++.....+. ..|. ++. +..+ . -..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~----~~G~----~v~--~lee----a------l~~ 250 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAA----MDGF----RVM--TMEE----A------AKI 250 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHH----hcCC----EeC--CHHH----H------Hhc
Confidence 3578999999774 44444455544 579999999997543332 2242 221 2222 2 134
Q ss_pred eeEEEEcCCccchHHHHH-HHHhcCCCCeEEEE
Q 025824 157 FDFIFVDADKDNYLNYHK-RLIELVKVGGVIGY 188 (247)
Q Consensus 157 fD~v~id~~~~~~~~~l~-~~~~~L~~gG~lv~ 188 (247)
.|+||.-.. ....+. .....+|+|++|+.
T Consensus 251 aDVVItaTG---~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 251 GDIFITATG---NKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CCEEEECCC---CHHHHHHHHHhcCCCCcEEEE
Confidence 698875432 344454 36789999998885
No 474
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.44 E-value=12 Score=32.90 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=55.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe--cchhhhHHHHhhhcC
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG--PALPVLDLLIQDEKN 153 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g--d~~~~l~~l~~~~~~ 153 (247)
..+..+||-+|+| .|..++.+++..+ ...+++++.+++..+.++ ..|...-+..... +..+.+..+.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~l~~~~----- 250 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAK----QLGATECINPRDQDKPIVEVLTEMT----- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HhCCCeecccccccchHHHHHHHHh-----
Confidence 3456788777753 3334455666653 235888888887665553 3454222222222 1112222221
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCC-CCeEEEEe
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVK-VGGVIGYD 189 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~-~gG~lv~d 189 (247)
.+.+|+|+ |... ....+....+.|+ ++|.++.-
T Consensus 251 ~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 DGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEE
Confidence 24699887 4421 2345677788899 99998853
No 475
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=83.29 E-value=13 Score=31.95 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCEEEEE--c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 79 NAKNTMEI--G-VYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 79 ~~~~vLEi--G-~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+|=+ | .+.|..++.+++.+ +.++++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34455544 3 23555666677765 5789999999886666654 4542211111122222222221 124
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
.+|+|| |..-. .........++++|.++.-
T Consensus 212 ~~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 212 NATIFF-DAVGG---GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCcEEE-ECCCc---HHHHHHHHhhCCCCEEEEE
Confidence 689887 44321 1234456788999998763
No 476
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.21 E-value=22 Score=29.48 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=43.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEEe
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
...+|+-+||| .|......+...+ -++++.+|.+.- ..+.+.+.+...+-.-+++.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 45789999986 3443333222222 468999987652 23445556665543334554444
Q ss_pred cch-hhhHHHHhhhcCCCceeEEEEcCC
Q 025824 139 PAL-PVLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 139 d~~-~~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
... +....+. ...||+|+.-.+
T Consensus 89 ~i~~~~~~~l~-----~~~~D~VvdaiD 111 (231)
T cd00755 89 FLTPDNSEDLL-----GGDPDFVVDAID 111 (231)
T ss_pred ecCHhHHHHHh-----cCCCCEEEEcCC
Confidence 332 2223332 346998875444
No 477
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.08 E-value=20 Score=29.88 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=48.5
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHHHHHHHHHcCCCCcEEEEEe
Q 025824 79 NAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRE-------------------NYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 79 ~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
+..+|+-+||| .|......+...+ -++++.+|.+.- .++.+.+.+.+.+-.-+++.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 45789999987 3444444333333 468888877542 24455666666554334554443
Q ss_pred cchh-hhHHHHhhhcCCCceeEEEEcCCccchHHHHHH
Q 025824 139 PALP-VLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKR 175 (247)
Q Consensus 139 d~~~-~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~ 175 (247)
...+ .+..+ -..+|+|+.-.+.......+..
T Consensus 102 ~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln~ 133 (240)
T TIGR02355 102 KLDDAELAAL------IAEHDIVVDCTDNVEVRNQLNR 133 (240)
T ss_pred cCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHHH
Confidence 3322 22333 3579988765553333333433
No 478
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.03 E-value=12 Score=32.25 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=52.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCce
Q 025824 79 NAKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSF 157 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~f 157 (247)
.+++|+-+|.| ..+..++..+. .+++|+.+|.+++..+.+ ...|. +++ +. +.+... -..+
T Consensus 151 ~g~kvlViG~G--~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~----~~~G~----~~~--~~-~~l~~~------l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFG--RTGMTLARTLKALGANVTVGARKSAHLARI----TEMGL----SPF--HL-SELAEE------VGKI 211 (296)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHcCC----eee--cH-HHHHHH------hCCC
Confidence 46899999975 34444333321 257999999997744333 33443 222 11 222332 2579
Q ss_pred eEEEEcCCccchHHHHHHHHhcCCCCeEEEEecccccc
Q 025824 158 DFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNG 195 (247)
Q Consensus 158 D~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~~~~g 195 (247)
|+||.-.+. .-.-+.....++||++|+ |=...+|
T Consensus 212 DiVI~t~p~---~~i~~~~l~~~~~g~vII-Dla~~pg 245 (296)
T PRK08306 212 DIIFNTIPA---LVLTKEVLSKMPPEALII-DLASKPG 245 (296)
T ss_pred CEEEECCCh---hhhhHHHHHcCCCCcEEE-EEccCCC
Confidence 999875432 122355667888987654 4333333
No 479
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.99 E-value=12 Score=31.07 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhc
Q 025824 75 LKLVNAKNTMEIGVYT-GYSLLATALALPDDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEK 152 (247)
Q Consensus 75 ~~~~~~~~vLEiG~g~-G~st~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~ 152 (247)
....+..+||-.|+|. |..++.++++.. .+ +++++.+++..+.+++ .|..+.+..... .. .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~---~----- 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAADTA---DE---I----- 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCccccccch---hh---h-----
Confidence 3445567888888754 556667777764 45 9999998887665554 341111111100 01 1
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+||-.... ...+....+.|+++|.++.
T Consensus 156 ~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 156 GGRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 13579988753232 2356777888999999874
No 480
>PLN02427 UDP-apiose/xylose synthase
Probab=82.84 E-value=3.8 Score=36.36 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=49.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHHcC---CCCcEEEEEecchhh--hHHHHhh
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALPD--DGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPV--LDLLIQD 150 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gd~~~~--l~~l~~~ 150 (247)
.++++||-+| |+|+.+.++++.+-. +.+|++++.++..... +...+ ...+++++.+|..+. +..+
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~--- 83 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSRLEGL--- 83 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhh----hhccccccCCCCeEEEEcCCCChHHHHHH---
Confidence 3567899888 789999999887643 2589999977653321 11111 224689999998653 2222
Q ss_pred hcCCCceeEEEEcC
Q 025824 151 EKNHGSFDFIFVDA 164 (247)
Q Consensus 151 ~~~~~~fD~v~id~ 164 (247)
-..+|.||.-+
T Consensus 84 ---~~~~d~ViHlA 94 (386)
T PLN02427 84 ---IKMADLTINLA 94 (386)
T ss_pred ---hhcCCEEEEcc
Confidence 23579888644
No 481
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.70 E-value=16 Score=32.52 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCC-------------------cchHHHHHHHHHHcCCCCcEEEEEe
Q 025824 79 NAKNTMEIGVYT-GYSLLATALALPDDGKILAMDIN-------------------RENYELGLPVIQKAGVAHKIDFREG 138 (247)
Q Consensus 79 ~~~~vLEiG~g~-G~st~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
...+|+-+|||. |......+...+ -++++.+|.+ ...++.+.+.+.+.+-.-+++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 567899999873 443333333333 4689999987 3446666677766543223444433
Q ss_pred cchh-hhHHHHhhhcCCCceeEEEEcCC
Q 025824 139 PALP-VLDLLIQDEKNHGSFDFIFVDAD 165 (247)
Q Consensus 139 d~~~-~l~~l~~~~~~~~~fD~v~id~~ 165 (247)
...+ .+..+ -..+|+|+...+
T Consensus 213 ~~~~~~~~~~------~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEAL------LQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHHH------HhCCCEEEECCC
Confidence 3321 12222 246998875544
No 482
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=82.69 E-value=12 Score=32.41 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEE-ecchhhhHHHHhhhcC
Q 025824 76 KLVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDLLIQDEKN 153 (247)
Q Consensus 76 ~~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-gd~~~~l~~l~~~~~~ 153 (247)
...+..+||-.|+| .|..+..+++.. +.+++++..+++..+.++ ..|...-+.... .+..+.+..+.
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~----- 230 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDLT----- 230 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHHh-----
Confidence 33456788887752 444555666665 578999988887655553 345521112211 12222222221
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+.+|++| |.... ...+....+.|+++|.++.
T Consensus 231 ~~~~d~vi-~~~g~--~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 231 GGGAHVSV-DALGI--PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCCEEE-EcCCC--HHHHHHHHHHhhcCCEEEE
Confidence 23799887 33211 3456677889999998875
No 483
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=82.53 E-value=21 Score=32.29 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINR-ENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
.|....+-..++...+...++=.++|+......+...+.++.+|+..+..- .........+...|. ++.++..+-.+
T Consensus 56 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~v~~~d~~ 133 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI--EVRFVDPDDPE 133 (418)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 355666666777766666777777666665555544455566777765432 122333444555564 34443322223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCC-CCeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVK-VGGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~-~gG~lv~d~~~~ 193 (247)
.+.... .+...+|++... +......++.+.++.+ .|..+++|++.-
T Consensus 134 ~l~~~l-----~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~ 182 (418)
T TIGR01326 134 EFEKAI-----DENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFA 182 (418)
T ss_pred HHHHhc-----CcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333322 235678888643 1111223444444443 356677788753
No 484
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.53 E-value=12 Score=26.80 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=52.0
Q ss_pred EEEEEcccccHHHHH-HHhhCCCCCEEE-EEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCceeE
Q 025824 82 NTMEIGVYTGYSLLA-TALALPDDGKIL-AMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDF 159 (247)
Q Consensus 82 ~vLEiG~g~G~st~~-la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD~ 159 (247)
+|.=||+|....... -.....++.+++ .+|.+++..+.+ .+..+. . ...|..+.+. ...+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~----~-~~~~~~~ll~--------~~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGI----P-VYTDLEELLA--------DEDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTS----E-EESSHHHHHH--------HTTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhcc----c-chhHHHHHHH--------hhcCCE
Confidence 577788865533322 122233366765 568887654443 444554 3 4556554444 357999
Q ss_pred EEEcCCccchHHHHHHHHhcCCCCeEEEEecc
Q 025824 160 IFVDADKDNYLNYHKRLIELVKVGGVIGYDNT 191 (247)
Q Consensus 160 v~id~~~~~~~~~l~~~~~~L~~gG~lv~d~~ 191 (247)
|++..+.....+.... .|+.|--++++-.
T Consensus 66 V~I~tp~~~h~~~~~~---~l~~g~~v~~EKP 94 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKK---ALEAGKHVLVEKP 94 (120)
T ss_dssp EEEESSGGGHHHHHHH---HHHTTSEEEEESS
T ss_pred EEEecCCcchHHHHHH---HHHcCCEEEEEcC
Confidence 9998876554444444 4456667776643
No 485
>PRK08324 short chain dehydrogenase; Validated
Probab=82.45 E-value=15 Score=35.59 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=48.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhh-cCCC
Q 025824 80 AKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDE-KNHG 155 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~-~~~~ 155 (247)
.++||-+|+ +|..+..+++.+. .+.+|+.++.+++..+.+.+.+... .++.++..|..+. +..+.++- ...+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467888885 4555566555542 3679999999987766555444332 3677888876542 22211100 0124
Q ss_pred ceeEEEEcCC
Q 025824 156 SFDFIFVDAD 165 (247)
Q Consensus 156 ~fD~v~id~~ 165 (247)
.+|+||..+.
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 7899987654
No 486
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=82.44 E-value=11 Score=33.47 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=54.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe---cchhhhHHHHhhhc
Q 025824 78 VNAKNTMEIGVY-TGYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREG---PALPVLDLLIQDEK 152 (247)
Q Consensus 78 ~~~~~vLEiG~g-~G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---d~~~~l~~l~~~~~ 152 (247)
....+||-.|+| .|..++.+++.. +. ++++++.+++..+.++ ..|...-+..... +..+.+..+.
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~--G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~~---- 271 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAA--GASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEVT---- 271 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHhc----
Confidence 345677777653 233344556654 35 7999998887544443 4565221111111 2222222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEEe
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYD 189 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~d 189 (247)
....+|+|+ |..- .....+..+.+.|+++|.++.-
T Consensus 272 ~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 134699776 5432 2234577788889999999853
No 487
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=82.42 E-value=9.3 Score=30.10 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=48.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCc
Q 025824 78 VNAKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGS 156 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~ 156 (247)
...++|.=+|+| ..+..+++.+. =+.+|+++|.+..... .....+ + ...+..+.+ ..
T Consensus 34 l~g~tvgIiG~G--~IG~~vA~~l~~fG~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell----------~~ 91 (178)
T PF02826_consen 34 LRGKTVGIIGYG--RIGRAVARRLKAFGMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELL----------AQ 91 (178)
T ss_dssp STTSEEEEESTS--HHHHHHHHHHHHTT-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHH----------HH
T ss_pred cCCCEEEEEEEc--CCcCeEeeeeecCCceeEEecccCChhh----hccccc----c--eeeehhhhc----------ch
Confidence 467899999864 55554444321 1579999999998443 122222 2 223443333 35
Q ss_pred eeEEEEcCCc--cchHHHHHHHHhcCCCCeEEE
Q 025824 157 FDFIFVDADK--DNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 157 fD~v~id~~~--~~~~~~l~~~~~~L~~gG~lv 187 (247)
.|+|++..+. +..--+=+..+..+|+|.+||
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 7999887762 111112244567889988877
No 488
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.41 E-value=12 Score=32.10 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=52.3
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHHc-CC--C--------CcEEEEEecchhhhHHH
Q 025824 80 AKNTMEIGVYTGYSLLATALAL-PDDGKILAMDINRENYELGLPVIQKA-GV--A--------HKIDFREGPALPVLDLL 147 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-g~--~--------~~i~~~~gd~~~~l~~l 147 (247)
-++|.=||+|. .+..++..+ ..+.+|+.+|.+++.++.+++.+... +. . .++++ ..|. ...
T Consensus 4 ~~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGL----AAA 76 (311)
T ss_pred ccEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCH----HHH
Confidence 35788888764 333333322 12568999999999888777643321 11 0 11221 1121 111
Q ss_pred HhhhcCCCceeEEEEcCCcc--chHHHHHHHHhcCCCCeEEE
Q 025824 148 IQDEKNHGSFDFIFVDADKD--NYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 148 ~~~~~~~~~fD~v~id~~~~--~~~~~l~~~~~~L~~gG~lv 187 (247)
-...|+||+-.... .....+..+.+.++++.+|+
T Consensus 77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 24579998866532 24566777777776665554
No 489
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=82.16 E-value=5.6 Score=34.47 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCEEEEEcccccHHHHHHHhhC-------------------CCCCEEEEEeCCcc--hHHHHHHHHHHc----------C
Q 025824 80 AKNTMEIGVYTGYSLLATALAL-------------------PDDGKILAMDINRE--NYELGLPVIQKA----------G 128 (247)
Q Consensus 80 ~~~vLEiG~g~G~st~~la~~~-------------------~~~~~v~~iD~~~~--~~~~a~~~~~~~----------g 128 (247)
..+||-||-|.|.--+.++..+ ++...|+.||+.+- .+......+... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998777777666 01248999999762 222222333222 0
Q ss_pred C----C--CcEEEEEecchhhhH-HHHhhhcCCCceeEEEE--------cCCccchHHHHHHHHhcCCCCeEEEEec
Q 025824 129 V----A--HKIDFREGPALPVLD-LLIQDEKNHGSFDFIFV--------DADKDNYLNYHKRLIELVKVGGVIGYDN 190 (247)
Q Consensus 129 ~----~--~~i~~~~gd~~~~l~-~l~~~~~~~~~fD~v~i--------d~~~~~~~~~l~~~~~~L~~gG~lv~d~ 190 (247)
. . -+++|.+.|....-. .+..-- .....|+|-+ .........+|..+-..++||.++++-|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll-~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLL-GPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHh-ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 1 147888888876432 111000 0124565521 1124455678888889999999998855
No 490
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=30 Score=30.36 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=50.5
Q ss_pred CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------chHHHHHHHHHHcCCCCcEEEEEec
Q 025824 81 KNTMEIGVYTGYSLLATALALP--DDGKILAMDINR-------------------ENYELGLPVIQKAGVAHKIDFREGP 139 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
.+||-||.| ..+..+++.+. .-.++..||++. ...+.|.+++.+.-....|..+.++
T Consensus 41 ~kiLviGAG--GLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGAG--GLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEccC--cccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 679999854 44555554332 112455555432 2345666666543223456788888
Q ss_pred chhhhHHHHhhhcCCCceeEEEEcCCccchHHHHHHH
Q 025824 140 ALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRL 176 (247)
Q Consensus 140 ~~~~l~~l~~~~~~~~~fD~v~id~~~~~~~~~l~~~ 176 (247)
..+.-..+ -..||+|++.-+.-....++...
T Consensus 119 Iqd~~~~F------Yk~F~~iicGLDsIeaRRwIN~m 149 (422)
T KOG2015|consen 119 IQDKPISF------YKRFDLIICGLDSIEARRWINGM 149 (422)
T ss_pred hhcCCHHH------HhhhceEEecccchhHHHHHHHH
Confidence 88776666 46899999876632233334433
No 491
>PRK07503 methionine gamma-lyase; Provisional
Probab=81.83 E-value=39 Score=30.39 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHHcCCCCcEEEEEecchh
Q 025824 64 SADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRE-NYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~g~~~~i~~~~gd~~~ 142 (247)
+|....+-..++...+....+=+++|+......+...+.++.+|+.....-. .....+..+...|. ++.++..+-.+
T Consensus 64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 141 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVDLTDPA 141 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeCCCCHH
Confidence 4556666666777666666666665555444444334555667777544221 12223344445553 23333222223
Q ss_pred hhHHHHhhhcCCCceeEEEEcCC--ccchHHHHHHHHhcCCC-CeEEEEecccc
Q 025824 143 VLDLLIQDEKNHGSFDFIFVDAD--KDNYLNYHKRLIELVKV-GGVIGYDNTLW 193 (247)
Q Consensus 143 ~l~~l~~~~~~~~~fD~v~id~~--~~~~~~~l~~~~~~L~~-gG~lv~d~~~~ 193 (247)
.+.... .....+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 142 ~l~~~i-----~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 142 ALKAAI-----SDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred HHHHhc-----CccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 333322 234678887533 11222223444433333 56777888764
No 492
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=81.81 E-value=11 Score=33.60 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=23.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc
Q 025824 81 KNTMEIGVYTGYSLLATALALPD-DGKILAMDINR 114 (247)
Q Consensus 81 ~~vLEiG~g~G~st~~la~~~~~-~~~v~~iD~~~ 114 (247)
++|.-|| |.|..+.+++..+.. +..|+++|.++
T Consensus 99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 6788888 456777777666542 45789998764
No 493
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.80 E-value=6.8 Score=34.29 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=49.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHH-HHHHHHHcC--CCCcEEEEEecchhh--hHHHHhhhc
Q 025824 79 NAKNTMEIGVYTGYSLLATALALP-DDGKILAMDINRENYEL-GLPVIQKAG--VAHKIDFREGPALPV--LDLLIQDEK 152 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~-~~~~v~~iD~~~~~~~~-a~~~~~~~g--~~~~i~~~~gd~~~~--l~~l~~~~~ 152 (247)
+.++||-.| |+|+.+.++++.+- .+.+|+++|........ ........+ ...+++++.+|..+. +..+.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~---- 88 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC---- 88 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh----
Confidence 457899999 78999999888864 34689999986543221 111111111 113688999998753 23332
Q ss_pred CCCceeEEEEcC
Q 025824 153 NHGSFDFIFVDA 164 (247)
Q Consensus 153 ~~~~fD~v~id~ 164 (247)
..+|.||.-+
T Consensus 89 --~~~d~ViHlA 98 (348)
T PRK15181 89 --KNVDYVLHQA 98 (348)
T ss_pred --hCCCEEEECc
Confidence 3589887654
No 494
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.78 E-value=25 Score=30.32 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=55.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhh--hHHHHhhh-cC
Q 025824 78 VNAKNTMEIGVYTGYSLLATALAL-PDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDLLIQDE-KN 153 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~--l~~l~~~~-~~ 153 (247)
...+.||=.|.|.|.- ..++..+ ..+++++..|++.+......+.+++.| ++.....|..+. +..+.++- .+
T Consensus 36 v~g~~vLITGgg~GlG-r~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLG-RLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHH-HHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 3467899999888753 4444332 346799999999999988888888776 577777776542 22222211 13
Q ss_pred CCceeEEEEcCC
Q 025824 154 HGSFDFIFVDAD 165 (247)
Q Consensus 154 ~~~fD~v~id~~ 165 (247)
.+..|+++-++.
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 578898876653
No 495
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.73 E-value=4.4 Score=35.63 Aligned_cols=96 Identities=7% Similarity=-0.071 Sum_probs=54.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-HcCCC------CcEEEEEecchhhhHHHHhhh
Q 025824 79 NAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQ-KAGVA------HKIDFREGPALPVLDLLIQDE 151 (247)
Q Consensus 79 ~~~~vLEiG~g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~------~~i~~~~gd~~~~l~~l~~~~ 151 (247)
...+|.-||+|.-. ..++..+...+.++.+..+++..+..++.-. ...+. .++.+ ..|. ...
T Consensus 6 ~~mkI~IiGaGa~G--~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~----~~a---- 74 (341)
T PRK12439 6 REPKVVVLGGGSWG--TTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDF----AEA---- 74 (341)
T ss_pred CCCeEEEECCCHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCH----HHH----
Confidence 44678889865444 4444333334467777787776555443210 00111 11211 1121 111
Q ss_pred cCCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 152 KNHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 152 ~~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
....|+||+-.+.......++.+.+.++++..++
T Consensus 75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 2467999998877777888899999998887554
No 496
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=81.70 E-value=11 Score=33.14 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=56.0
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEe---cchhhhHHHHhhhc
Q 025824 77 LVNAKNTMEIGVY-TGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG---PALPVLDLLIQDEK 152 (247)
Q Consensus 77 ~~~~~~vLEiG~g-~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---d~~~~l~~l~~~~~ 152 (247)
..+..+||-.|+| .|..++.+++..+ ..+|++++.+++..+.++ ..|.. .++.. +....+..+.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~----~~g~~---~vv~~~~~~~~~~l~~~~---- 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELAR----RFGAT---HTVNASEDDAVEAVRDLT---- 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHH----HhCCe---EEeCCCCccHHHHHHHHc----
Confidence 3456788777764 4566677777653 224889988887655443 34542 22222 2222222221
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 153 NHGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 153 ~~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
....+|+++ |.... ...+..+.+.|+++|.++.
T Consensus 248 ~~~~vd~vl-d~~~~--~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 248 DGRGADYAF-EAVGR--AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCCCCEEE-EcCCC--hHHHHHHHHHhhcCCeEEE
Confidence 135699776 43221 2456777888999999875
No 497
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.62 E-value=6 Score=33.48 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=51.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCCcee
Q 025824 82 NTMEIGVYTGYSLLATALALPDD---GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFD 158 (247)
Q Consensus 82 ~vLEiG~g~G~st~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~~fD 158 (247)
+|.=|| .|..+..++..+... .+|+++|.+++..+.+. ..|... . ..+ ...+ . ..|
T Consensus 2 ~I~iIG--~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~---~-~~~----~~~~------~-~aD 60 (275)
T PRK08507 2 KIGIIG--LGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVD---E-IVS----FEEL------K-KCD 60 (275)
T ss_pred EEEEEc--cCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCc---c-cCC----HHHH------h-cCC
Confidence 455677 455555555554322 37999999988655543 344311 1 111 1222 2 279
Q ss_pred EEEEcCCccchHHHHHHHHhcCCCCeEEE
Q 025824 159 FIFVDADKDNYLNYHKRLIELVKVGGVIG 187 (247)
Q Consensus 159 ~v~id~~~~~~~~~l~~~~~~L~~gG~lv 187 (247)
+||+-.+.......+..+.+ ++++.+|+
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99998887777788888878 88877554
No 498
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.60 E-value=28 Score=30.09 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=53.0
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcCCC
Q 025824 78 VNAKNTMEIGVYT-GYSLLATALALPDDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHG 155 (247)
Q Consensus 78 ~~~~~vLEiG~g~-G~st~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~~~ 155 (247)
.+..+||-.|+|. |..++.+++.. +. ++++++.+++..+.++ ..|...-+.....+.. .+..+. ..+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~-~~~~~~----~~~ 230 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAK----KMGADVVINPREEDVV-EVKSVT----DGT 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHH-HHHHHc----CCC
Confidence 3456776666542 45556677765 35 7888877666554443 3454211111122222 222221 135
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 156 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 156 ~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
.+|+||-.... ......+.+.|+++|.++.
T Consensus 231 ~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 231 GVDVVLEMSGN---PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCCEEEECCCC---HHHHHHHHHHhccCCEEEE
Confidence 79988743221 3345677788999999885
No 499
>PRK07904 short chain dehydrogenase; Provisional
Probab=81.30 E-value=14 Score=30.56 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=52.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CC-CCEEEEEeCCcch-HHHHHHHHHHcCCCCcEEEEEecchhhh--HHHHhhhc
Q 025824 78 VNAKNTMEIGVYTGYSLLATALAL-PD-DGKILAMDINREN-YELGLPVIQKAGVAHKIDFREGPALPVL--DLLIQDEK 152 (247)
Q Consensus 78 ~~~~~vLEiG~g~G~st~~la~~~-~~-~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~i~~~~gd~~~~l--~~l~~~~~ 152 (247)
.++++||-.|+ +|..+..+++.+ .. +.+|+.++.+++. ++.+.+.+...+. .+++++..|..+.- ..+.+.-.
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 45778999996 566777777764 33 3699999998875 5555555555442 36888888875421 11111100
Q ss_pred CCCceeEEEEcC
Q 025824 153 NHGSFDFIFVDA 164 (247)
Q Consensus 153 ~~~~fD~v~id~ 164 (247)
..+..|+++...
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 125789887644
No 500
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=81.20 E-value=19 Score=30.63 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=54.8
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHHcCCCCcEEEEEecchhhhHHHHhhhcC
Q 025824 76 KLVNAKNTMEIGV--YTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKN 153 (247)
Q Consensus 76 ~~~~~~~vLEiG~--g~G~st~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd~~~~l~~l~~~~~~ 153 (247)
...+..+||-.|+ +.|..++.+|+++ +.+++.+.-+++..+.++ ..|.. .++.....+....+.... .
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~~i~~~~-~ 205 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRDAGVAELR----ALGIG---PVVSTEQPGWQDKVREAA-G 205 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHH----hcCCC---EEEcCCCchHHHHHHHHh-C
Confidence 3445677877774 3677777788876 467777766665443333 34542 222222111212211111 1
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcCCCCeEEEE
Q 025824 154 HGSFDFIFVDADKDNYLNYHKRLIELVKVGGVIGY 188 (247)
Q Consensus 154 ~~~fD~v~id~~~~~~~~~l~~~~~~L~~gG~lv~ 188 (247)
...+|+|| |.... ..+..+.+.|+++|.++.
T Consensus 206 ~~~~d~v~-d~~g~---~~~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 206 GAPISVAL-DSVGG---KLAGELLSLLGEGGTLVS 236 (324)
T ss_pred CCCCcEEE-ECCCC---hhHHHHHHhhcCCcEEEE
Confidence 34699887 44322 234677889999999885
Done!