Query 025825
Match_columns 247
No_of_seqs 163 out of 1130
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o5a_A BH1328 protein; BHR21, 100.0 1.4E-40 4.9E-45 271.7 12.7 113 129-242 3-117 (125)
2 2id1_A Hypothetical protein; a 100.0 1.2E-39 4.1E-44 268.1 13.4 115 129-246 3-120 (130)
3 3ups_A Iojap-like protein; PSI 100.0 3.7E-39 1.3E-43 266.9 11.7 116 124-240 14-131 (136)
4 3fni_A Putative diflavin flavo 55.0 27 0.00092 27.6 6.1 48 127-175 16-72 (159)
5 5nul_A Flavodoxin; electron tr 54.6 29 0.001 25.9 6.0 42 127-169 10-55 (138)
6 3f6r_A Flavodoxin; FMN binding 50.3 37 0.0013 25.6 6.0 41 128-169 14-59 (148)
7 3hly_A Flavodoxin-like domain; 49.0 34 0.0012 26.8 5.8 44 127-171 12-63 (161)
8 2fz5_A Flavodoxin; alpha/beta 46.6 43 0.0015 24.5 5.7 54 127-181 11-74 (137)
9 3e6q_A Putative 5-carboxymethy 45.4 50 0.0017 26.8 6.3 70 122-191 32-115 (146)
10 1f4p_A Flavodoxin; electron tr 44.5 39 0.0013 25.4 5.3 42 128-170 13-59 (147)
11 2d9o_A DNAJ (HSP40) homolog, s 44.3 18 0.00061 27.0 3.3 17 95-111 30-46 (100)
12 3b6i_A Flavoprotein WRBA; flav 42.6 43 0.0015 26.3 5.5 56 127-182 13-95 (198)
13 2krb_A Eukaryotic translation 42.2 13 0.00046 25.4 2.1 17 95-111 20-36 (81)
14 3r27_A HnRNP L, heterogeneous 40.0 28 0.00096 26.3 3.8 48 94-143 33-80 (100)
15 1e5d_A Rubredoxin\:oxygen oxid 39.9 29 0.001 30.4 4.5 43 127-170 264-314 (402)
16 2hna_A Protein MIOC, flavodoxi 39.8 45 0.0015 25.3 5.0 42 128-170 14-57 (147)
17 1owx_A Lupus LA protein, SS-B, 38.7 17 0.00057 28.8 2.4 26 96-121 33-58 (121)
18 2fc9_A NCL protein; structure 38.7 13 0.00045 26.4 1.7 21 94-114 27-47 (101)
19 3d2w_A TAR DNA-binding protein 37.6 15 0.0005 26.2 1.8 19 94-112 23-41 (89)
20 3ign_A Diguanylate cyclase; gg 36.8 1.3E+02 0.0046 22.6 7.8 54 130-187 63-116 (177)
21 1vdh_A Muconolactone isomerase 36.3 1.2E+02 0.004 26.9 7.7 39 143-183 57-95 (249)
22 2nlw_A Eukaryotic translation 36.1 21 0.0007 25.9 2.4 17 95-111 34-50 (105)
23 4f25_A Polyadenylate-binding p 36.1 18 0.00063 26.7 2.2 17 94-110 17-33 (115)
24 2wp4_A Molybdopterin-convertin 36.0 1.4E+02 0.0048 24.2 7.7 56 133-188 69-127 (147)
25 1ydg_A Trp repressor binding p 35.8 70 0.0024 25.5 5.8 55 127-182 18-105 (211)
26 1sjq_A Polypyrimidine tract-bi 35.8 18 0.00062 27.5 2.1 17 95-111 29-45 (105)
27 2e5i_A Heterogeneous nuclear r 35.4 16 0.00054 28.5 1.8 16 94-109 37-52 (124)
28 2pe8_A Splicing factor 45; RRM 35.3 24 0.00082 26.2 2.7 18 93-110 24-41 (105)
29 3ry0_A Putative tautomerase; o 35.1 30 0.001 23.2 3.0 29 165-193 7-35 (65)
30 1t0t_V APC35880; pentamer, ico 35.0 1.3E+02 0.0043 26.6 7.7 38 143-182 53-90 (248)
31 1bvy_F Protein (cytochrome P45 34.8 72 0.0025 26.2 5.8 43 127-170 33-78 (191)
32 2ark_A Flavodoxin; FMN, struct 34.7 54 0.0018 26.0 4.9 45 127-171 16-64 (188)
33 4fxv_A ELAV-like protein 1; RN 34.4 19 0.00065 26.1 2.0 18 94-111 31-48 (99)
34 1x5s_A Cold-inducible RNA-bind 34.2 46 0.0016 23.4 4.0 17 94-110 24-40 (102)
35 2cpe_A RNA-binding protein EWS 33.8 28 0.00094 25.2 2.8 17 94-110 27-43 (113)
36 3m21_A Probable tautomerase HP 33.7 49 0.0017 22.3 3.9 26 168-193 13-38 (67)
37 4dzz_A Plasmid partitioning pr 33.4 85 0.0029 24.3 5.8 77 132-227 18-116 (206)
38 1wex_A Hypothetical protein (r 32.8 19 0.00065 26.8 1.8 17 95-111 28-44 (104)
39 2dnl_A Cytoplasmic polyadenyla 32.8 19 0.00064 26.5 1.7 18 94-111 20-37 (114)
40 2vzf_A NADH-dependent FMN redu 32.8 48 0.0017 26.6 4.4 48 127-175 16-85 (197)
41 3zzy_A Polypyrimidine tract-bi 32.1 19 0.00064 28.6 1.7 16 95-110 41-56 (130)
42 3beg_B Splicing factor, argini 32.0 37 0.0013 25.0 3.3 46 96-144 30-75 (115)
43 3mf7_A CIS-3-chloroacrylic aci 31.5 73 0.0025 25.6 5.2 56 167-222 10-75 (149)
44 3pg5_A Uncharacterized protein 31.3 1.2E+02 0.0042 26.8 7.2 47 133-179 141-195 (361)
45 3s8s_A Histone-lysine N-methyl 31.2 21 0.00072 26.5 1.8 17 94-110 18-34 (110)
46 2a5l_A Trp repressor binding p 31.1 50 0.0017 25.9 4.1 56 127-183 17-99 (200)
47 2amj_A Modulator of drug activ 31.0 51 0.0018 27.0 4.3 56 126-182 29-97 (204)
48 1otf_A 4-oxalocrotonate tautom 30.8 58 0.002 21.0 3.8 28 166-193 8-35 (62)
49 1x5p_A Negative elongation fac 30.5 22 0.00077 25.1 1.8 18 94-111 25-42 (97)
50 3m20_A 4-oxalocrotonate tautom 30.5 84 0.0029 20.8 4.6 38 167-204 8-51 (62)
51 1why_A Hypothetical protein ri 30.5 25 0.00085 24.8 2.0 18 94-111 29-46 (97)
52 3nn1_A Chlorite dismutase; fer 30.4 2E+02 0.0069 25.2 8.2 54 130-183 37-91 (241)
53 3mdf_A Peptidyl-prolyl CIS-tra 30.1 28 0.00096 23.5 2.2 17 95-111 20-36 (85)
54 2cq2_A Hypothetical protein LO 29.8 26 0.00089 27.1 2.2 18 94-111 39-56 (114)
55 3p5t_L Cleavage and polyadenyl 29.8 49 0.0017 23.0 3.5 14 94-107 13-26 (90)
56 2e5h_A Zinc finger CCHC-type a 29.6 38 0.0013 23.4 2.8 18 94-111 28-45 (94)
57 1x4d_A Matrin 3; structural ge 29.4 18 0.0006 27.2 1.1 47 94-142 28-74 (102)
58 1x4c_A Splicing factor, argini 28.8 32 0.0011 24.9 2.4 18 95-112 28-45 (108)
59 1obo_A Flavodoxin; electron tr 28.8 1E+02 0.0035 23.6 5.5 40 127-169 13-56 (169)
60 1ykg_A SIR-FP, sulfite reducta 28.6 1E+02 0.0034 24.1 5.5 43 127-170 21-67 (167)
61 2ohh_A Type A flavoprotein FPR 28.5 44 0.0015 29.3 3.7 56 126-182 267-334 (404)
62 1x4a_A Splicing factor, argini 28.4 30 0.001 24.9 2.2 17 94-110 34-50 (109)
63 3n4h_A Putative tautomerase; C 28.4 2E+02 0.007 22.1 7.3 67 127-193 15-97 (148)
64 1whx_A Hypothetical protein ri 28.4 27 0.00094 25.7 2.0 19 94-112 22-40 (111)
65 1sjr_A Polypyrimidine tract-bi 28.2 28 0.00095 28.8 2.2 16 94-109 58-73 (164)
66 2zki_A 199AA long hypothetical 28.1 64 0.0022 25.4 4.3 55 127-182 15-97 (199)
67 2dgu_A Heterogeneous nuclear r 27.9 31 0.0011 24.6 2.2 18 94-111 23-40 (103)
68 2e44_A Insulin-like growth fac 27.3 33 0.0011 23.9 2.2 19 94-112 27-45 (96)
69 2dnp_A RNA-binding protein 14; 27.2 33 0.0011 23.7 2.2 18 94-111 21-38 (90)
70 3bs9_A Nucleolysin TIA-1 isofo 27.2 34 0.0012 23.2 2.2 17 94-110 18-34 (87)
71 4a8x_A RNA-binding protein wit 27.2 31 0.0011 23.4 2.0 18 94-111 16-33 (88)
72 2vxh_A Chlorite dismutase; hem 27.2 2.3E+02 0.008 25.0 8.1 52 132-183 47-99 (251)
73 2cqc_A Arginine/serine-rich sp 27.1 31 0.0011 23.8 2.0 17 94-110 27-43 (95)
74 2ytc_A PRE-mRNA-splicing facto 26.7 32 0.0011 23.3 2.0 18 94-111 24-41 (85)
75 2q9u_A A-type flavoprotein; fl 26.6 44 0.0015 29.6 3.4 55 126-181 267-333 (414)
76 3mf7_A CIS-3-chloroacrylic aci 26.6 2.4E+02 0.0084 22.4 9.4 68 126-193 14-97 (149)
77 1t5b_A Acyl carrier protein ph 26.6 93 0.0032 24.2 5.0 30 127-156 16-46 (201)
78 2cq1_A PTB-like protein L; RRM 26.5 20 0.00069 26.5 0.9 18 94-111 27-44 (101)
79 2cqh_A IGF-II mRNA-binding pro 26.5 24 0.00081 24.6 1.3 17 94-110 20-36 (93)
80 3hva_A Protein FIMX; ggdef dig 26.4 1.6E+02 0.0054 22.0 6.2 53 131-187 69-121 (177)
81 2ywk_A Putative RNA-binding pr 26.4 35 0.0012 23.6 2.2 16 95-110 29-44 (95)
82 2xnq_A Nuclear polyadenylated 26.3 34 0.0012 24.4 2.2 18 94-111 35-52 (97)
83 3ns6_A Eukaryotic translation 26.2 36 0.0012 24.4 2.3 18 93-110 23-40 (100)
84 3s7r_A Heterogeneous nuclear r 26.1 31 0.001 23.6 1.8 17 94-110 23-39 (87)
85 2aal_A Malonate semialdehyde d 26.0 2.1E+02 0.0072 21.5 7.8 28 166-193 73-100 (131)
86 2e5g_A U6 snRNA-specific termi 25.8 33 0.0011 24.0 1.9 18 94-111 20-37 (94)
87 1fxl_A Paraneoplastic encephal 25.7 81 0.0028 23.3 4.2 17 94-110 100-116 (167)
88 1whw_A Hypothetical protein ri 25.6 34 0.0012 23.9 2.0 18 94-111 20-37 (99)
89 2dgv_A HnRNP M, heterogeneous 25.1 36 0.0012 23.4 2.0 17 94-110 20-36 (92)
90 2cpf_A RNA binding motif prote 25.0 35 0.0012 23.8 2.0 17 94-110 17-33 (98)
91 2cqp_A RNA-binding protein 12; 25.0 24 0.00082 24.7 1.1 16 94-109 27-42 (98)
92 2dnq_A RNA-binding protein 4B; 24.9 35 0.0012 23.6 1.9 16 95-110 21-36 (90)
93 1x5u_A Splicing factor 3B subu 24.9 35 0.0012 24.1 2.0 18 94-111 27-44 (105)
94 2dh8_A DAZ-associated protein 24.9 35 0.0012 24.2 2.0 17 94-110 28-44 (105)
95 2cph_A RNA binding motif prote 24.9 36 0.0012 24.1 2.0 18 94-111 27-44 (107)
96 1czn_A Flavodoxin; FMN binding 24.9 1.1E+02 0.0036 23.5 4.9 41 127-169 12-56 (169)
97 2lkz_A RNA-binding protein 5; 24.8 44 0.0015 24.3 2.5 15 94-108 21-35 (95)
98 2dnz_A Probable RNA-binding pr 24.8 33 0.0011 23.8 1.8 17 94-110 17-33 (95)
99 1x4e_A RNA binding motif, sing 24.7 51 0.0017 22.3 2.7 18 94-111 17-34 (85)
100 2cqi_A Nucleolysin TIAR; RNA r 24.6 39 0.0013 23.9 2.2 17 94-110 27-43 (103)
101 3v4m_A Splicing factor U2AF 65 24.5 38 0.0013 25.1 2.1 17 94-110 27-43 (105)
102 2wbr_A GW182, gawky, LD47780P; 24.5 28 0.00096 26.3 1.4 45 95-144 20-67 (89)
103 2opa_A Probable tautomerase YW 24.4 1.1E+02 0.0036 19.6 4.2 28 166-193 8-35 (61)
104 2jvr_A Nucleolar protein 3; RN 24.3 47 0.0016 25.0 2.7 18 95-112 41-59 (111)
105 3ucg_A Polyadenylate-binding p 24.3 41 0.0014 22.9 2.1 16 95-110 19-34 (89)
106 3ulh_A THO complex subunit 4; 24.1 38 0.0013 24.1 2.0 17 94-110 41-57 (107)
107 2kxn_B Transformer-2 protein h 23.9 91 0.0031 23.5 4.3 17 94-110 58-74 (129)
108 2x1f_A MRNA 3'-END-processing 23.9 38 0.0013 23.7 2.0 17 95-111 15-31 (96)
109 2dit_A HIV TAT specific factor 23.9 29 0.001 25.4 1.4 17 93-109 37-53 (112)
110 3ha4_A MIX1; TPR-like, helix-t 23.9 71 0.0024 26.1 3.8 27 93-125 96-123 (154)
111 1x4g_A Nucleolysin TIAR; struc 23.9 41 0.0014 24.2 2.2 18 94-111 37-54 (109)
112 1oo0_B CG8781-PA, drosophila Y 23.8 41 0.0014 24.1 2.2 18 94-111 38-55 (110)
113 1p27_B RNA-binding protein 8A; 23.7 41 0.0014 23.8 2.2 16 95-110 36-51 (106)
114 2cq3_A RNA-binding protein 9; 23.6 38 0.0013 24.0 1.9 17 94-110 27-43 (103)
115 2dgt_A RNA-binding protein 30; 23.6 27 0.00093 24.3 1.1 17 94-110 22-38 (92)
116 2ad9_A Polypyrimidine tract-bi 23.4 25 0.00084 27.3 0.9 17 94-110 43-59 (119)
117 1s79_A Lupus LA protein; RRM, 23.4 37 0.0013 24.9 1.9 17 94-110 23-39 (103)
118 2cqg_A TDP-43, TAR DNA-binding 23.3 43 0.0015 23.7 2.2 17 94-110 27-43 (103)
119 2khc_A Testis-specific RNP-typ 23.2 30 0.001 25.2 1.3 18 94-111 52-69 (118)
120 2dnh_A Bruno-like 5, RNA bindi 23.2 37 0.0013 24.1 1.8 17 94-110 27-43 (105)
121 2dgs_A DAZ-associated protein 23.0 32 0.0011 24.2 1.4 17 94-110 22-38 (99)
122 2xs2_A Deleted in azoospermia- 23.0 44 0.0015 23.6 2.2 16 95-110 22-37 (102)
123 2dnm_A SRP46 splicing factor; 22.9 37 0.0013 24.0 1.8 18 94-111 25-42 (103)
124 3mlc_A FG41 malonate semialdeh 22.9 94 0.0032 24.3 4.3 56 165-220 7-76 (136)
125 2cq4_A RNA binding motif prote 22.8 37 0.0013 24.5 1.8 18 94-111 37-54 (114)
126 3mlc_A FG41 malonate semialdeh 22.8 2.7E+02 0.0092 21.6 7.6 66 127-193 14-99 (136)
127 2jwn_A Embryonic polyadenylate 22.7 41 0.0014 24.6 2.0 16 95-110 49-64 (124)
128 2do0_A HnRNP M, heterogeneous 22.7 38 0.0013 24.4 1.8 17 94-110 27-43 (114)
129 2do4_A Squamous cell carcinoma 22.2 39 0.0013 23.7 1.8 17 94-110 29-45 (100)
130 3md1_A Nuclear and cytoplasmic 22.1 39 0.0013 22.7 1.6 17 95-111 14-30 (83)
131 2div_A TRNA selenocysteine ass 22.0 32 0.0011 24.1 1.3 17 94-110 21-37 (99)
132 1x4h_A RNA-binding protein 28; 21.9 44 0.0015 23.8 2.0 18 94-111 27-44 (111)
133 1u6f_A Tcubp1, RNA-binding pro 21.8 46 0.0016 24.9 2.2 17 94-110 54-70 (139)
134 2dgo_A Cytotoxic granule-assoc 21.7 47 0.0016 23.9 2.2 17 94-110 27-43 (115)
135 4ap8_A Molybdopterin synthase 21.7 2.6E+02 0.0087 22.4 6.7 62 127-188 61-124 (135)
136 1sqs_A Conserved hypothetical 21.6 1.2E+02 0.004 25.1 4.8 55 127-181 15-105 (242)
137 1wf0_A TDP-43, TAR DNA-binding 21.5 24 0.00082 24.4 0.5 17 95-111 18-34 (88)
138 2hpv_A FMN-dependent NADH-azor 21.5 1.1E+02 0.0038 24.3 4.6 29 126-154 16-45 (208)
139 2cqd_A RNA-binding region cont 21.4 45 0.0015 24.2 2.0 17 94-110 29-45 (116)
140 1iqt_A AUF1, heterogeneous nuc 21.3 39 0.0013 22.3 1.5 17 94-110 11-27 (75)
141 2ek1_A RNA-binding protein 12; 21.3 34 0.0012 23.7 1.3 16 94-109 27-42 (95)
142 2dgp_A Bruno-like 4, RNA bindi 21.3 35 0.0012 24.2 1.3 17 94-110 25-41 (106)
143 3ej9_A Alpha-subunit of trans- 21.2 95 0.0033 21.7 3.6 28 166-193 9-36 (76)
144 2rs2_A Musashi-1, RNA-binding 20.9 43 0.0015 24.4 1.8 18 94-111 37-54 (109)
145 3mlq_E Transcription-repair co 20.9 20 0.00067 25.8 -0.1 23 217-241 29-51 (71)
146 2cpx_A Hypothetical protein FL 20.8 31 0.0011 24.8 1.0 16 94-109 37-52 (115)
147 2kvi_A Nuclear polyadenylated 20.8 30 0.001 24.4 0.9 17 94-110 23-39 (96)
148 2mss_A Protein (musashi1); RNA 20.7 38 0.0013 22.4 1.3 17 94-110 11-27 (75)
149 2ko1_A CTR148A, GTP pyrophosph 20.6 2E+02 0.0067 19.3 5.2 50 132-182 18-67 (88)
150 2dgx_A KIAA0430 protein; RRM d 20.5 53 0.0018 23.1 2.2 17 95-111 22-42 (96)
151 2d9p_A Polyadenylate-binding p 20.4 32 0.0011 24.4 0.9 17 94-110 27-43 (103)
152 2a3j_A U1 small nuclear ribonu 20.2 54 0.0018 25.2 2.3 16 95-110 46-61 (127)
153 3ex7_B RNA-binding protein 8A; 20.2 49 0.0017 24.2 2.0 17 94-110 34-50 (126)
154 2cpz_A CUG triplet repeat RNA- 20.2 35 0.0012 24.7 1.2 17 94-110 37-53 (115)
155 3dd7_B PHD, prevent HOST death 20.2 43 0.0015 19.8 1.3 15 95-109 2-16 (23)
156 1x5t_A Splicing factor 3B subu 20.1 35 0.0012 23.7 1.1 15 95-109 18-32 (96)
157 1wf1_A RNA-binding protein RAL 20.0 36 0.0012 24.5 1.2 15 95-109 41-55 (110)
No 1
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=100.00 E-value=1.4e-40 Score=271.74 Aligned_cols=113 Identities=31% Similarity=0.539 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCCEEEEE
Q 025825 129 SLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPS--GDSKPNSWTLLD 206 (247)
Q Consensus 129 s~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d~lKe~~g~~p~--~g~~~~~WiLlD 206 (247)
+.++++.++++|+|+||+||+||||++++++|||||||||+|.||++|||++|++.+|+. |..|. +|..+++|+|+|
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~-g~~~~~~EG~~~~~WvLlD 81 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQ-GIEIKRLEGYEQARWVLID 81 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHT-TCCCCEEESTTTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHc-CCccccccCCCCCCEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999876 66665 477889999999
Q ss_pred cCCEEEEecCcccccccchhhhcCCCceecCCCCCC
Q 025825 207 FGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFENQ 242 (247)
Q Consensus 207 ~GdIVVHIFtpE~RefYdLE~LW~da~~i~l~~~~~ 242 (247)
|||||||||+||.|+|||||+||+++|.++++....
T Consensus 82 ~GdVvVHif~~e~RefY~LE~LW~da~~~~~~~~~~ 117 (125)
T 2o5a_A 82 LGDVVVHVFHKDERAYYNLEKLWGDAPTVELEGVIS 117 (125)
T ss_dssp CSSEEEEEEETTCGGGTSTTTCC---CBCCSCC---
T ss_pred CCCEEEEeCCHHHHhHcCHHHHhCCCCccccccccc
Confidence 999999999999999999999999999998876543
No 2
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=100.00 E-value=1.2e-39 Score=268.08 Aligned_cols=115 Identities=24% Similarity=0.432 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCCEEEEE
Q 025825 129 SLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPS--GDSKPNSWTLLD 206 (247)
Q Consensus 129 s~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d~lKe~~g~~p~--~g~~~~~WiLlD 206 (247)
+.++++.++++|+|+||+||+||||++++++|||||||||+|.||++|||++|++.+|+. |..|. +|.++++|+|||
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~-g~~~~~~EG~~~~~WvLlD 81 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEA-GVDIVGSEGHESGEWVLVD 81 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHT-TCCCCBCCSTTTSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHc-CCcCccccCCCCCCEEEEe
Confidence 567899999999999999999999999999999999999999999999999999999875 65555 467889999999
Q ss_pred cCCEEEEecCcccccccchhhhc-CCCceecCCCCCCCCCC
Q 025825 207 FGDVVIHIFLPQQRAFYNLEEFY-GNATTIELPFENQPPFR 246 (247)
Q Consensus 207 ~GdIVVHIFtpE~RefYdLE~LW-~da~~i~l~~~~~~~~~ 246 (247)
|||||||||+||.|+|||||+|| +++|.+ ....+.|..
T Consensus 82 ~GdVvVHIf~~e~RefY~LE~LW~~da~~~--~~g~~~~~~ 120 (130)
T 2id1_A 82 AGDVVVHVMLPAVRDYYDIEALWGGQKPSF--AVGAAKPWS 120 (130)
T ss_dssp ETTEEEEEECHHHHHHHCHHHHTTCCCCCC--CSCCSCSCC
T ss_pred cCCEEEEcCCHHHHhHcCHHHHhcCCCccc--ccCCccchH
Confidence 99999999999999999999999 999986 456666653
No 3
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=100.00 E-value=3.7e-39 Score=266.91 Aligned_cols=116 Identities=24% Similarity=0.428 Sum_probs=99.5
Q ss_pred CcchhhHHHHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCC
Q 025825 124 DDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPS--GDSKPNS 201 (247)
Q Consensus 124 ~dd~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d~lKe~~g~~p~--~g~~~~~ 201 (247)
.+.+++.++++.|+++|+|+||+||+||||++++++|||||||||+|.||++|||++|++.+|+. |..|. +|..+++
T Consensus 14 ~~~~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~-g~~~~~~EG~~~~~ 92 (136)
T 3ups_A 14 QTSFDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAA-TGYVSKIEGLPAAD 92 (136)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHH-HCCCCEEESCSSCS
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHc-CCccCcccCCCCCC
Confidence 34456788999999999999999999999999999999999999999999999999999999876 44554 4778899
Q ss_pred EEEEEcCCEEEEecCcccccccchhhhcCCCceecCCCC
Q 025825 202 WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPFE 240 (247)
Q Consensus 202 WiLlD~GdIVVHIFtpE~RefYdLE~LW~da~~i~l~~~ 240 (247)
|+||||||||||||+||.|+|||||+||++++..+-+..
T Consensus 93 WvLlD~GdVvVHIf~~e~RefY~LE~LW~d~~~~d~~~s 131 (136)
T 3ups_A 93 WVLLDAGDIIIHLFRPEVRSFYNLERMWGFGDESDQPVS 131 (136)
T ss_dssp EEEEECSSEEEEEECHHHHHHHHHHHHTTTTC-------
T ss_pred EEEEeCCCEEEEeCCHHHHHHcCHHHHhCcCCcccchhh
Confidence 999999999999999999999999999999998765543
No 4
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=54.98 E-value=27 Score=27.60 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC-Cc--------ccCEEEEEEcCCHHHHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL-VY--------WTHFFIIATAFSRPQID 175 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~-s~--------~aDYfVIaTg~S~RHv~ 175 (247)
..+..+|+.|++.|.+.+ .++.++|+... .. -+|.+||+|..-.-.+.
T Consensus 16 GnT~~iA~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p 72 (159)
T 3fni_A 16 GYSDRLAQAIINGITKTG-VGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAAS 72 (159)
T ss_dssp TTHHHHHHHHHHHHHHTT-CEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHH
T ss_pred hHHHHHHHHHHHHHHHCC-CeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCcc
Confidence 456778999999998854 48999999875 31 16899999887554343
No 5
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=54.56 E-value=29 Score=25.88 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC----cccCEEEEEEcC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV----YWTHFFIIATAF 169 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s----~~aDYfVIaTg~ 169 (247)
-.+..+|+.|++.|.+. +.++.++|+.+.. .-+|.+||++..
T Consensus 10 GnT~~iA~~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~d~iiig~pt 55 (138)
T 5nul_A 10 GNTEKMAELIAKGIIES-GKDVNTINVSDVNIDELLNEDILILGCSA 55 (138)
T ss_dssp SHHHHHHHHHHHHHHHT-TCCCEEEEGGGCCHHHHTTCSEEEEEECC
T ss_pred chHHHHHHHHHHHHHHC-CCeEEEEEhhhCCHHHHhhCCEEEEEcCc
Confidence 35778899999999886 4589999998753 246999999875
No 6
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=50.29 E-value=37 Score=25.60 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCeEEEecCCC--Cc---ccCEEEEEEcC
Q 025825 128 ESLSFAVAMARVVSDVKAADIKVLFVKPL--VY---WTHFFIIATAF 169 (247)
Q Consensus 128 ~s~~la~~Ia~aL~dkKAeDIvVLDV~~~--s~---~aDYfVIaTg~ 169 (247)
.+..+|+.|++.|.+. +.++.++|+.+. .. -+|.+||++..
T Consensus 14 nT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~~d~ii~g~pt 59 (148)
T 3f6r_A 14 NTESIAQKLEELIAAG-GHEVTLLNAADASAENLADGYDAVLFGCSA 59 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TCEEEEEETTTBCCTTTTTTCSEEEEEECE
T ss_pred hHHHHHHHHHHHHHhC-CCeEEEEehhhCCHhHhcccCCEEEEEecc
Confidence 5678899999998775 458999999864 22 45899999854
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=48.96 E-value=34 Score=26.82 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--c------ccCEEEEEEcCCH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV--Y------WTHFFIIATAFSR 171 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--~------~aDYfVIaTg~S~ 171 (247)
..+..+|+.|++.|.+. +.++.++|+.... . -+|.+||+|..-.
T Consensus 12 GnT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~ 63 (161)
T 3hly_A 12 GYSDRLSQAIGRGLVKT-GVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ 63 (161)
T ss_dssp TTHHHHHHHHHHHHHHT-TCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS
T ss_pred hHHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC
Confidence 35677899999999875 4479999998753 2 2799999997643
No 8
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=46.61 E-value=43 Score=24.49 Aligned_cols=54 Identities=7% Similarity=0.109 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC----cccCEEEEEEcCC----HHH--HHHHHHHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV----YWTHFFIIATAFS----RPQ--IDAIGSRI 181 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s----~~aDYfVIaTg~S----~RH--v~AIAd~V 181 (247)
..+..+|+.|++.+.+. +.+|.++|+.+.. .-+|.+||+|..- ..+ ++...+.+
T Consensus 11 GnT~~~a~~i~~~l~~~-g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAA-GADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDL 74 (137)
T ss_dssp SHHHHHHHHHHHHHHHT-TCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhC-CCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHh
Confidence 45778899999999875 5689999998753 2469999998763 133 55555544
No 9
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=45.36 E-value=50 Score=26.75 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred ccCcchhhHHHHHHHHHHHHhC---CCCCeEEEecCCCCcc------cCEEEE-----EEcCCHHHHHHHHHHHHHHHHH
Q 025825 122 EIDDDAESLSFAVAMARVVSDV---KAADIKVLFVKPLVYW------THFFII-----ATAFSRPQIDAIGSRIRDLAEK 187 (247)
Q Consensus 122 e~~dd~~s~~la~~Ia~aL~dk---KAeDIvVLDV~~~s~~------aDYfVI-----aTg~S~RHv~AIAd~V~d~lKe 187 (247)
.+.+..+...+.+.|-++|-+. ...||.+--.+-.... .+.||- ..|+|..|-+++++.|.+.+++
T Consensus 32 nl~~~~d~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~ 111 (146)
T 3e6q_A 32 NLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQALGESLCEVLAG 111 (146)
T ss_dssp TCEESSCHHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3333445566788888887664 3456655444322111 245664 4599999999999999999998
Q ss_pred hcCC
Q 025825 188 EYGK 191 (247)
Q Consensus 188 ~~g~ 191 (247)
.++.
T Consensus 112 ~l~~ 115 (146)
T 3e6q_A 112 AVAG 115 (146)
T ss_dssp HEEE
T ss_pred HhCC
Confidence 7554
No 10
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=44.47 E-value=39 Score=25.39 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCeEEEecCCCC--c--c-cCEEEEEEcCC
Q 025825 128 ESLSFAVAMARVVSDVKAADIKVLFVKPLV--Y--W-THFFIIATAFS 170 (247)
Q Consensus 128 ~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--~--~-aDYfVIaTg~S 170 (247)
.+..+|+.|++.|.+. +.+|.++|+.+.. . - +|.+||+|..-
T Consensus 13 nt~~~a~~i~~~l~~~-g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y 59 (147)
T 1f4p_A 13 NTEYTAETIARELADA-GYEVDSRDAASVEAGGLFEGFDLVLLGCSTW 59 (147)
T ss_dssp HHHHHHHHHHHHHHHH-TCEEEEEEGGGCCSTTTTTTCSEEEEEECEE
T ss_pred HHHHHHHHHHHHHHhc-CCeeEEEehhhCCHHHhcCcCCEEEEEeCCC
Confidence 5677899999988765 4588899988642 2 2 78999987543
No 11
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.26 E-value=18 Score=27.03 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.|.++|++||+|+.
T Consensus 30 te~~L~~~F~~~G~V~~ 46 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLN 46 (100)
T ss_dssp CHHHHHHHHHTTSCEEE
T ss_pred CHHHHHHHHHhcCCEEE
Confidence 45899999999999744
No 12
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=42.57 E-value=43 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC-----------------------CcccCEEEEEEcCC----HHHHHHHHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL-----------------------VYWTHFFIIATAFS----RPQIDAIGS 179 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~-----------------------s~~aDYfVIaTg~S----~RHv~AIAd 179 (247)
..+..+++.+++.+.+..+.+|.++|+.+. -.-+|.+||+|..- +.++++..+
T Consensus 13 g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 92 (198)
T 3b6i_A 13 GHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLD 92 (198)
T ss_dssp SHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETTEECHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhcCCchHHHHHHHH
Confidence 456778999999988744568999998752 13579999999654 456666666
Q ss_pred HHH
Q 025825 180 RIR 182 (247)
Q Consensus 180 ~V~ 182 (247)
.+.
T Consensus 93 ~~~ 95 (198)
T 3b6i_A 93 QTG 95 (198)
T ss_dssp TCH
T ss_pred Hhh
Confidence 554
No 13
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=42.16 E-value=13 Score=25.39 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.+.++|++||+++-
T Consensus 20 t~~~l~~~F~~~G~i~~ 36 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITN 36 (81)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhhcCCeEE
Confidence 77999999999998754
No 14
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=40.00 E-value=28 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred chHHHHHHHHHhhCcEEEccCCCCCCCcccCcchhhHHHHHHHHHHHHhC
Q 025825 94 DTDEMFDNLLNKYGKVVYRRNDQKSPAAEIDDDAESLSFAVAMARVVSDV 143 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~~~~~k~~~~e~~dd~~s~~la~~Ia~aL~dk 143 (247)
-+++.+.+||+.||+|..-.-.+....+=+ ..+..+-|...++.+...
T Consensus 33 ~te~~L~~lF~~fG~V~~v~i~~~kg~AFV--ef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 33 VVEADLVEALQEFGPISYVVVMPKKRQALV--EFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETTTTEEEE--EESSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhccCCEEEEEEEcCCCEEEE--EECCHHHHHHHHHHhcCC
Confidence 356889999999999853321110111211 223445566666777654
No 15
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=39.90 E-value=29 Score=30.38 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--------cccCEEEEEEcCC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV--------YWTHFFIIATAFS 170 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--------~~aDYfVIaTg~S 170 (247)
..+..+|+.|++.|.+. +.++.++|+.... .-+|.+||+|..-
T Consensus 264 Gnt~~lA~~i~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~ 314 (402)
T 1e5d_A 264 HSTEKMARVLAESFRDE-GCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTH 314 (402)
T ss_dssp SHHHHHHHHHHHHHHHT-TCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCB
T ss_pred hhHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHHCCEEEEECCcc
Confidence 46777899999988765 4589999998753 3468999999643
No 16
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=39.78 E-value=45 Score=25.31 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCeEEEecCCCCcc--cCEEEEEEcCC
Q 025825 128 ESLSFAVAMARVVSDVKAADIKVLFVKPLVYW--THFFIIATAFS 170 (247)
Q Consensus 128 ~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~--aDYfVIaTg~S 170 (247)
.+..+|+.|++.|.+. +.+|.++++.....+ .|.+||++..-
T Consensus 14 nT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 14 GAEYVAEHLAEKLEEA-GFTTETLHGPLLEDLPASGIWLVISSTH 57 (147)
T ss_dssp CCHHHHHHHHHHHHHT-TCCEEEECCTTSCSSCSEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHC-CCceEEecCCCHHHcccCCeEEEEECcc
Confidence 4567899999999875 557888887654433 47788877654
No 17
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.74 E-value=17 Score=28.75 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCcEEEccCCCCCCCc
Q 025825 96 DEMFDNLLNKYGKVVYRRNDQKSPAA 121 (247)
Q Consensus 96 ~e~~~~lf~~~g~~v~~~~~~k~~~~ 121 (247)
.|.|.++|++||+|.|-+=..-..++
T Consensus 33 redLke~F~~~G~V~~Vd~~~g~~tg 58 (121)
T 1owx_A 33 REDLHILFSNHGEIKWIDFVRGAKEG 58 (121)
T ss_dssp HHHHHHHTCSSCCEEEEECCTTCSEE
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCEE
Confidence 58999999999999876543323344
No 18
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.73 E-value=13 Score=26.35 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.4
Q ss_pred chHHHHHHHHHhhCcEEEccC
Q 025825 94 DTDEMFDNLLNKYGKVVYRRN 114 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~~~ 114 (247)
-+.+.+.++|++||.|.+-..
T Consensus 27 ~t~~~l~~~F~~~g~v~~~~~ 47 (101)
T 2fc9_A 27 ATEETLQEVFEKATFIKVPQN 47 (101)
T ss_dssp CCHHHHHHHCSSCSEEECCBC
T ss_pred CCHHHHHHHHHhCCEEEEEEC
Confidence 456889999999999855444
No 19
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=37.60 E-value=15 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.4
Q ss_pred chHHHHHHHHHhhCcEEEc
Q 025825 94 DTDEMFDNLLNKYGKVVYR 112 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~ 112 (247)
-+++.+.++|++||+|+--
T Consensus 23 ~te~~L~~~F~~~G~i~~v 41 (89)
T 3d2w_A 23 MTAEELQQFFCQYGEVVDV 41 (89)
T ss_dssp CCHHHHHHHHTTTSCEEEE
T ss_pred CCHHHHHHHHhccCCEEEE
Confidence 3568899999999998543
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=36.79 E-value=1.3e+02 Score=22.56 Aligned_cols=54 Identities=20% Similarity=0.055 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Q 025825 130 LSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEK 187 (247)
Q Consensus 130 ~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d~lKe 187 (247)
-.+...+++.|.+.-...-.+.-+.+ ..|+|+....+...+..+++.|.+.+.+
T Consensus 63 d~~L~~ia~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 116 (177)
T 3ign_A 63 DEVIRHTADVTRNNIRQSDSAGRYGG----EEFGIILPETDAESARVICERIREAIEK 116 (177)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 34577888888776554444555543 4677888888889999999999888764
No 21
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: d.58.4.10
Probab=36.27 E-value=1.2e+02 Score=26.87 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=33.1
Q ss_pred CCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHH
Q 025825 143 VKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRD 183 (247)
Q Consensus 143 kKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d 183 (247)
.+...+.++++.+.. ||+|+...+.+..+++++-..++.
T Consensus 57 ~~~~~~~~Y~v~G~r--ADlm~w~~~~~~~~Lq~~~~~~~r 95 (249)
T 1vdh_A 57 AGQGSYGIYQVVGHK--ADLLFLNLRPGLDPLLEAEARLSR 95 (249)
T ss_dssp TTSCEEEEEEECSTT--CSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHHh
Confidence 566777799999988 999999999999999887666653
No 22
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=36.11 E-value=21 Score=25.88 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.+.++|++||.|+-
T Consensus 34 t~~~l~~~F~~~G~v~~ 50 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITN 50 (105)
T ss_dssp HHHHHHHHHGGGSCEEE
T ss_pred HHHHHHHHHhcCCCEEE
Confidence 78999999999998854
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=36.10 E-value=18 Score=26.67 Aligned_cols=17 Identities=6% Similarity=0.372 Sum_probs=14.3
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.|.++|++||.|+
T Consensus 17 ~te~~L~~~F~~~G~v~ 33 (115)
T 4f25_A 17 IDNKALYDTFSAFGNIL 33 (115)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHhccCCEE
Confidence 35689999999999974
No 24
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=36.01 E-value=1.4e+02 Score=24.16 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=38.6
Q ss_pred HHHHH-HHHHhCCCCCeEEEecCCCCcccC--EEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 025825 133 AVAMA-RVVSDVKAADIKVLFVKPLVYWTH--FFIIATAFSRPQIDAIGSRIRDLAEKE 188 (247)
Q Consensus 133 a~~Ia-~aL~dkKAeDIvVLDV~~~s~~aD--YfVIaTg~S~RHv~AIAd~V~d~lKe~ 188 (247)
.++|+ ++...-...+|.|+.=-+.-...| .+|.+++..++..-..++.+.+.+|..
T Consensus 69 l~~I~~ea~~r~~~~~v~i~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~ 127 (147)
T 2wp4_A 69 LMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQE 127 (147)
T ss_dssp HHHHHHHHHTSSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhh
Confidence 44444 444444577888887666555554 456677777888888899999999975
No 25
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.80 E-value=70 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC-----------------------C------cccCEEEEEEcCC----HHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL-----------------------V------YWTHFFIIATAFS----RPQ 173 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~-----------------------s------~~aDYfVIaTg~S----~RH 173 (247)
..+..+++.+++.+.+ .+.+|.++|+.+. . ..+|.+||+|..= +.+
T Consensus 18 g~T~~la~~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~ 96 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRA-AGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQ 96 (211)
T ss_dssp SHHHHHHHHHHHHHHH-TTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTEECHH
T ss_pred ChHHHHHHHHHHHHhc-CCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccCccHH
Confidence 4577889999999988 4568999999873 1 2579999998643 466
Q ss_pred HHHHHHHHH
Q 025825 174 IDAIGSRIR 182 (247)
Q Consensus 174 v~AIAd~V~ 182 (247)
+++..+.+.
T Consensus 97 lk~~ld~~~ 105 (211)
T 1ydg_A 97 MRAFIDTLG 105 (211)
T ss_dssp HHHHHHTTH
T ss_pred HHHHHHHhc
Confidence 777666664
No 26
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.78 E-value=18 Score=27.55 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+++.+.+||+.||+|+-
T Consensus 29 te~dL~~lF~~fG~V~~ 45 (105)
T 1sjq_A 29 TEGEVISLGLPFGKVTN 45 (105)
T ss_dssp CHHHHHHHHHHHCCEEE
T ss_pred CHHHHHHHHHhcCCEEE
Confidence 56889999999999854
No 27
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.37 E-value=16 Score=28.54 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhhCcE
Q 025825 94 DTDEMFDNLLNKYGKV 109 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~ 109 (247)
-+.++|.+||++||+|
T Consensus 37 vt~~~L~~~Fs~yG~V 52 (124)
T 2e5i_A 37 ITVDVLYTVCNPVGKV 52 (124)
T ss_dssp CCHHHHHHHHTTTSCE
T ss_pred CCHHHHHHHHHhcCCE
Confidence 3557899999999998
No 28
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=35.33 E-value=24 Score=26.23 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=14.1
Q ss_pred cchHHHHHHHHHhhCcEE
Q 025825 93 EDTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 93 ~~~~e~~~~lf~~~g~~v 110 (247)
+++.+.+.++|++||+|+
T Consensus 24 dd~~~dl~~~f~~~G~V~ 41 (105)
T 2pe8_A 24 EDLEVETKEECEKYGKVG 41 (105)
T ss_dssp --CHHHHHHHGGGGSCEE
T ss_pred HHHHHHHHHHHHhcCCEE
Confidence 356799999999999873
No 29
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=35.05 E-value=30 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.3
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 165 IATAFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 165 IaTg~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
+..|+|..|-++|++.|.+.+.+.+|..+
T Consensus 7 ~~~Grs~eqk~~L~~~it~~~~~~lg~p~ 35 (65)
T 3ry0_A 7 LLEGRSPQEVAALGEALTAAAHETLGTPV 35 (65)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 34689999999999999999988777543
No 30
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein structure initiative, MCSG, PSI; HET: P33; 1.75A {Geobacillus stearothermophilus} SCOP: d.58.4.10
Probab=35.04 E-value=1.3e+02 Score=26.62 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=32.5
Q ss_pred CCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHH
Q 025825 143 VKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIR 182 (247)
Q Consensus 143 kKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~ 182 (247)
.+...+.++++.+.. +|+|+...+.+..+++++-..++
T Consensus 53 ~~~~~~~~Y~v~G~r--aDlm~w~~~~~~~~lq~~~~~~~ 90 (248)
T 1t0t_V 53 EKQGSHAVYTIVGQK--ADILFMILRPTLDELHEIETALN 90 (248)
T ss_dssp TTSCEEEEEEECSSS--CSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHH
Confidence 566677799999988 99999999999999988766665
No 31
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=34.77 E-value=72 Score=26.18 Aligned_cols=43 Identities=14% Similarity=-0.019 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC-Cc--ccCEEEEEEcCC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL-VY--WTHFFIIATAFS 170 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~-s~--~aDYfVIaTg~S 170 (247)
-.+..+|+.|++.|.+. +.++.++|+.+. .. -.|.+||++..-
T Consensus 33 GnTe~~A~~ia~~l~~~-g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty 78 (191)
T 1bvy_F 33 GTAEGTARDLADIAMSK-GFAPQVATLDSHAGNLPREGAVLIVTASY 78 (191)
T ss_dssp SHHHHHHHHHHHHHHTT-TCCCEEEEGGGSTTCCCSSSEEEEEECCB
T ss_pred hHHHHHHHHHHHHHHhC-CCceEEeeHHHhhhhhhhCCeEEEEEeec
Confidence 46778899999998754 568899999872 22 258888888764
No 32
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.72 E-value=54 Score=26.00 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC----cccCEEEEEEcCCH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV----YWTHFFIIATAFSR 171 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s----~~aDYfVIaTg~S~ 171 (247)
..+..+++.|++.+.+..+.+|.++|+.+.. .-+|.+||+|..-.
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~ 64 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNM 64 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBT
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccC
Confidence 4567789999999987345689999998853 35799999997654
No 33
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=34.42 E-value=19 Score=26.12 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.8
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||+|+.
T Consensus 31 ~te~~L~~~F~~~G~I~~ 48 (99)
T 4fxv_A 31 MTQDELRSLFSSIGEVES 48 (99)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 456899999999998753
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.20 E-value=46 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.683 Sum_probs=13.9
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||+++
T Consensus 24 ~t~~~l~~~f~~~G~i~ 40 (102)
T 1x5s_A 24 TNEQSLEQVFSKYGQIS 40 (102)
T ss_dssp CCHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999873
No 35
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.81 E-value=28 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.5
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 27 VTLDDLADFFKQCGVVK 43 (113)
T ss_dssp CCHHHHHHHHTTTSCBC
T ss_pred CCHHHHHHHHHhcCCEe
Confidence 35688999999999986
No 36
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=33.70 E-value=49 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 168 AFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 168 g~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
|+|..|-++|++.|.+.+.+.+|..|
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~ 38 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNK 38 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCc
Confidence 89999999999999999988777544
No 37
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.41 E-value=85 Score=24.26 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEE
Q 025825 132 FAVAMARVVSDVKAADIKVLFVKPLVYWTH--------FFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKPNSWT 203 (247)
Q Consensus 132 la~~Ia~aL~dkKAeDIvVLDV~~~s~~aD--------YfVIaTg~S~RHv~AIAd~V~d~lKe~~g~~p~~g~~~~~Wi 203 (247)
++..+|..|.. ++..|.++|.......++ +-++..+. +.+.+.+.+. ...-+++
T Consensus 18 ~a~~la~~la~-~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~l~~l--------~~~yD~v 79 (206)
T 4dzz_A 18 AVINIATALSR-SGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAAS---------EKDVYGIRKD--------LADYDFA 79 (206)
T ss_dssp HHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCS---------HHHHHTHHHH--------TTTSSEE
T ss_pred HHHHHHHHHHH-CCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCc---------HHHHHHHHHh--------cCCCCEE
Confidence 46666677766 788999999976654433 33555443 2233333321 1124788
Q ss_pred EEEcC--------------CEEEEecCcccccccchhh
Q 025825 204 LLDFG--------------DVVIHIFLPQQRAFYNLEE 227 (247)
Q Consensus 204 LlD~G--------------dIVVHIFtpE~RefYdLE~ 227 (247)
+||++ |.+|=+..++... ..+.+
T Consensus 80 iiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~ 116 (206)
T 4dzz_A 80 IVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAG 116 (206)
T ss_dssp EEECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHH
Confidence 88874 5666667766654 44433
No 38
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.83 E-value=19 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.+.+||++||+|+-
T Consensus 28 te~~L~~~F~~fG~V~~ 44 (104)
T 1wex_A 28 VEADLVEALEKFGTICY 44 (104)
T ss_dssp CHHHHHHHHTTTSCEEE
T ss_pred CHHHHHHHHHhCCCEEE
Confidence 55889999999999854
No 39
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.82 E-value=19 Score=26.51 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=15.1
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 20 ~te~~L~~~F~~~G~i~~ 37 (114)
T 2dnl_A 20 IDEDEITASFRRFGPLVV 37 (114)
T ss_dssp CCHHHHHHHTTTTCCCCE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 356889999999999873
No 40
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=32.76 E-value=48 Score=26.56 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHH-HHhCCCCCeEEEecCCCC---------------------cccCEEEEEEcCCHHHHH
Q 025825 127 AESLSFAVAMARV-VSDVKAADIKVLFVKPLV---------------------YWTHFFIIATAFSRPQID 175 (247)
Q Consensus 127 ~~s~~la~~Ia~a-L~dkKAeDIvVLDV~~~s---------------------~~aDYfVIaTg~S~RHv~ 175 (247)
..+..+++.+++. +.+. +.++.++|+.+.. .-+|.+||+|..=.-.+-
T Consensus 16 g~t~~la~~i~~~~l~~~-g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p 85 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARS-DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYT 85 (197)
T ss_dssp CHHHHHHHHHHHHHHHHS-SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred ChHHHHHHHHHHHHHHHC-CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCC
Confidence 4577889999888 8776 5689999998752 147999999876544333
No 41
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=32.09 E-value=19 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+++.+||++||+|.
T Consensus 41 te~~L~~lFs~yG~V~ 56 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVL 56 (130)
T ss_dssp CHHHHHHHHTTSSCEE
T ss_pred CHHHHHHHHhCcCCEE
Confidence 4578999999999973
No 42
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=31.98 E-value=37 Score=25.03 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCcEEEccCCCCCCCcccCcchhhHHHHHHHHHHHHhCC
Q 025825 96 DEMFDNLLNKYGKVVYRRNDQKSPAAEIDDDAESLSFAVAMARVVSDVK 144 (247)
Q Consensus 96 ~e~~~~lf~~~g~~v~~~~~~k~~~~e~~dd~~s~~la~~Ia~aL~dkK 144 (247)
.+.|.++|++||+|+.-.=... --+-+ ..++.+.|+..++.|..+.
T Consensus 30 ~~~l~~~F~~~G~v~~~~i~~~-g~afV--~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 30 WQDLKDHMREAGDVCYADVYRD-GTGVV--EFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp TTHHHHHHGGGSCEEEEEECTT-SEEEE--EESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhcCCeEEEEEecC-CEEEE--EECCHHHHHHHHHHhCCCE
Confidence 4779999999999865432211 11111 2233455666666665543
No 43
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=31.47 E-value=73 Score=25.60 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=39.2
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhcCCCCCC------CCCCCCEEE----EEcCCEEEEecCcccccc
Q 025825 167 TAFSRPQIDAIGSRIRDLAEKEYGKVPSG------DSKPNSWTL----LDFGDVVIHIFLPQQRAF 222 (247)
Q Consensus 167 Tg~S~RHv~AIAd~V~d~lKe~~g~~p~~------g~~~~~WiL----lD~GdIVVHIFtpE~Ref 222 (247)
...|..|.++|++.|.+.+.+.++..+.. ....++|.+ -.-+-++|||..-+.|..
T Consensus 10 ~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~ 75 (149)
T 3mf7_A 10 DRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSA 75 (149)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCH
Confidence 45789999999999999998877754421 235567765 222348899987666643
No 44
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=31.32 E-value=1.2e+02 Score=26.78 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCeEEEecCCCC--------cccCEEEEEEcCCHHHHHHHHH
Q 025825 133 AVAMARVVSDVKAADIKVLFVKPLV--------YWTHFFIIATAFSRPQIDAIGS 179 (247)
Q Consensus 133 a~~Ia~aL~dkKAeDIvVLDV~~~s--------~~aDYfVIaTg~S~RHv~AIAd 179 (247)
...+.+.+.+...-|+++||..+.- ..+|++||.+..+..-++++..
T Consensus 141 l~~ll~~l~~~~~yD~VIID~pP~l~~~~~~aL~~aD~viip~~~~~~s~~~~~~ 195 (361)
T 3pg5_A 141 AGQLAHAMERDDRYDVIFFDVGPSLGPFNRTVLLGCDAFVTPTATDLFSFHAFGN 195 (361)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCSCCSHHHHHHHTTCSEEEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCEEEEECCCCcCHHHHHHHHHCCEEEEEecCChHHHHHHHH
Confidence 3444455555557899999999731 3589999999988766655543
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=31.24 E-value=21 Score=26.55 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.3
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.|.++|++||+|+
T Consensus 18 ~te~~L~~~F~~~G~i~ 34 (110)
T 3s8s_A 18 VRETFLKDMCRKYGEVE 34 (110)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhcCCee
Confidence 35688999999999975
No 46
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.12 E-value=50 Score=25.88 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC---------------------C--cccCEEEEEEcCC----HHHHHHHHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL---------------------V--YWTHFFIIATAFS----RPQIDAIGS 179 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~---------------------s--~~aDYfVIaTg~S----~RHv~AIAd 179 (247)
..+..+++.+++.+.+. +.+|.++|+.+. . .-+|.+||+|..= +.++++..+
T Consensus 17 g~T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQG-GFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHT-TCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhC-CCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 35777899999999874 568999999872 1 2479999999654 456666666
Q ss_pred HHHH
Q 025825 180 RIRD 183 (247)
Q Consensus 180 ~V~d 183 (247)
.+..
T Consensus 96 ~~~~ 99 (200)
T 2a5l_A 96 GTSS 99 (200)
T ss_dssp TCHH
T ss_pred HHHH
Confidence 5543
No 47
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=31.05 E-value=51 Score=27.01 Aligned_cols=56 Identities=7% Similarity=0.094 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHhCCCCCeEEEecCCCC---------cccCEEEEEEcC----CHHHHHHHHHHHH
Q 025825 126 DAESLSFAVAMARVVSDVKAADIKVLFVKPLV---------YWTHFFIIATAF----SRPQIDAIGSRIR 182 (247)
Q Consensus 126 d~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s---------~~aDYfVIaTg~----S~RHv~AIAd~V~ 182 (247)
...+..+++.+++.+.+. +.+|.++|+.+.. ..+|.+||+|-. -+.++++.-|.|.
T Consensus 29 ~s~~~~l~~~~~~~~~~~-g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 29 GQLNDTLTEVADGTLRDL-GHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHc-CCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 367788899999999887 7889999998632 478999999964 4567777777664
No 48
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=30.76 E-value=58 Score=20.96 Aligned_cols=28 Identities=4% Similarity=0.013 Sum_probs=23.7
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 166 ATAFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 166 aTg~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
..|+|..|-+++++.|.+.+.+.+|..+
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~~lg~p~ 35 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMANSLDAPL 35 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3589999999999999999988777543
No 49
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.54 E-value=22 Score=25.06 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=15.0
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||+|+.
T Consensus 25 ~t~~~l~~~F~~~G~i~~ 42 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIID 42 (97)
T ss_dssp CCHHHHHHHHTTTSCEEE
T ss_pred CCHHHHHHHHhhCCCEEE
Confidence 456899999999998854
No 50
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.48 E-value=84 Score=20.84 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=28.8
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhcCCCCCC------CCCCCCEEE
Q 025825 167 TAFSRPQIDAIGSRIRDLAEKEYGKVPSG------DSKPNSWTL 204 (247)
Q Consensus 167 Tg~S~RHv~AIAd~V~d~lKe~~g~~p~~------g~~~~~WiL 204 (247)
.|+|..|-++|++.|.+.+.+..|..|.. +...++|-.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~ 51 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGV 51 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEE
Confidence 68999999999999999998877765432 334456754
No 51
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.48 E-value=25 Score=24.75 Aligned_cols=18 Identities=6% Similarity=0.259 Sum_probs=14.8
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||.|+-
T Consensus 29 ~t~~~l~~~F~~~G~v~~ 46 (97)
T 1why_A 29 TSLAALAREFDRFGSIRT 46 (97)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhcCCeeE
Confidence 356889999999998754
No 52
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=30.41 E-value=2e+02 Score=25.22 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhC-CCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHH
Q 025825 130 LSFAVAMARVVSDV-KAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRD 183 (247)
Q Consensus 130 ~~la~~Ia~aL~dk-KAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d 183 (247)
...+.++.+++++. ......+++|.+...=+|+|+.-.+.+..+++++-..++.
T Consensus 37 ~~~~~e~~~~l~~~~~~~~~~~Y~v~G~radaDlm~w~~~~~~~~lq~~~~~f~~ 91 (241)
T 3nn1_A 37 VISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMG 91 (241)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTTSTTCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccceEEEEEEeecccCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 33455555555542 2356888999999888999999999999999987776653
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=30.07 E-value=28 Score=23.52 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.+.++|++||+++.
T Consensus 20 ~~~~l~~~f~~~G~i~~ 36 (85)
T 3mdf_A 20 DDKVLHAAFIPFGDITD 36 (85)
T ss_dssp CHHHHHHHHGGGSCEEE
T ss_pred CHHHHHHHHhccCCEEE
Confidence 45889999999998754
No 54
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.85 E-value=26 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.5
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-++|.+.++|++||+|.-
T Consensus 39 ~te~~L~~~F~~fG~v~~ 56 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDA 56 (114)
T ss_dssp CCHHHHHHHHHHHSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 355899999999998743
No 55
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=29.84 E-value=49 Score=22.97 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.1
Q ss_pred chHHHHHHHHHhhC
Q 025825 94 DTDEMFDNLLNKYG 107 (247)
Q Consensus 94 ~~~e~~~~lf~~~g 107 (247)
-+++.+.++|+.||
T Consensus 13 ~t~~~l~~~F~~~G 26 (90)
T 3p5t_L 13 TTDEDLTEAVHSLG 26 (90)
T ss_dssp CCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhC
Confidence 35688999999999
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.58 E-value=38 Score=23.39 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 28 ~t~~~l~~~f~~~G~v~~ 45 (94)
T 2e5h_A 28 LTNNDLYRIFSKYGKVVK 45 (94)
T ss_dssp SCHHHHHHHTTTTSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 356889999999998743
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.41 E-value=18 Score=27.16 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhhCcEEEccCCCCCCCcccCcchhhHHHHHHHHHHHHh
Q 025825 94 DTDEMFDNLLNKYGKVVYRRNDQKSPAAEIDDDAESLSFAVAMARVVSD 142 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~~~~~k~~~~e~~dd~~s~~la~~Ia~aL~d 142 (247)
-+++.+.+||..||+|.--.=......+=+ ..+..+-|...++.|..
T Consensus 28 ~te~dL~~lF~~fG~V~~v~i~~~kg~aFV--ef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 28 NLRYQLLQLVEPFGVISNHLILNKINEAFI--EMATTEDAQAAVDYYTT 74 (102)
T ss_dssp SHHHHHHTTTGGGSCEEEEEECSSSSCEEE--EESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcCCCEEEE--EECCHHHHHHHHHHHcC
Confidence 367889999999999754322211112211 22334446666666654
No 58
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.82 E-value=32 Score=24.89 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhCcEEEc
Q 025825 95 TDEMFDNLLNKYGKVVYR 112 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~~ 112 (247)
+.+.+.++|.+||+|+.-
T Consensus 28 t~~~l~~~F~~~G~i~~~ 45 (108)
T 1x4c_A 28 SWQDLKDHMREAGDVCYA 45 (108)
T ss_dssp CHHHHHHHHGGGSCEEEE
T ss_pred CHHHHHHHHHhcCCEeEE
Confidence 458899999999988543
No 59
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=28.80 E-value=1e+02 Score=23.64 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--c--ccCEEEEEEcC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV--Y--WTHFFIIATAF 169 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--~--~aDYfVIaTg~ 169 (247)
..+..+|+.|++.|.+. .+.++|+.+.. . -+|.+||++..
T Consensus 13 GnT~~vA~~ia~~l~~~---~v~~~~~~~~~~~~l~~~d~ii~g~p~ 56 (169)
T 1obo_A 13 GKTESVAEIIRDEFGND---VVTLHDVSQAEVTDLNDYQYLIIGCPT 56 (169)
T ss_dssp SHHHHHHHHHHHHHCTT---TEEEEETTTCCGGGGGGCSEEEEEEEE
T ss_pred chHHHHHHHHHHHhCcC---CcEEEEcccCCHHHHhhCCEEEEEEee
Confidence 45677888888888653 78889988642 2 36889998866
No 60
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=28.58 E-value=1e+02 Score=24.08 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--c--ccCEEEEEEcCC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV--Y--WTHFFIIATAFS 170 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--~--~aDYfVIaTg~S 170 (247)
..+..+|+.|++.|.+. +.++.++++.+.. . -.|.+||++..-
T Consensus 21 GnT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 21 GNARRVAEALRDDLLAA-KLNVKLVNAGDYKFKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp SHHHHHHHHHHHHHHHH-TCCCEEEEGGGCCGGGGGGCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHHHC-CCceEEeehhhCCHHHhccCCeEEEEEccc
Confidence 45778899999998765 4578889987642 2 358899988765
No 61
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=28.49 E-value=44 Score=29.26 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--------cccCEEEEEEcCC----HHHHHHHHHHHH
Q 025825 126 DAESLSFAVAMARVVSDVKAADIKVLFVKPLV--------YWTHFFIIATAFS----RPQIDAIGSRIR 182 (247)
Q Consensus 126 d~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--------~~aDYfVIaTg~S----~RHv~AIAd~V~ 182 (247)
...+..+|+.|++.+.+. +.++.++|+.+.. .-+|.+||+|..= ..++++..+.+.
T Consensus 267 ~gnT~~la~~i~~~l~~~-g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~ 334 (404)
T 2ohh_A 267 HGSTRKMAHAIAEGAMSE-GVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLR 334 (404)
T ss_dssp SSHHHHHHHHHHHHHHTT-TCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhh
Confidence 456888999999998874 5589999998753 2479999998742 345666665553
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.45 E-value=30 Score=24.86 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 34 ~t~~~l~~~F~~~G~v~ 50 (109)
T 1x4a_A 34 IRTKDIEDVFYKYGAIR 50 (109)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35588999999999984
No 63
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=28.43 E-value=2e+02 Score=22.12 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHh---CCCCCeEE--EecCCC------CcccC--EEE---EEEcCCHHHHHHHHHHHHHHHHHhcC
Q 025825 127 AESLSFAVAMARVVSD---VKAADIKV--LFVKPL------VYWTH--FFI---IATAFSRPQIDAIGSRIRDLAEKEYG 190 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~d---kKAeDIvV--LDV~~~------s~~aD--YfV---IaTg~S~RHv~AIAd~V~d~lKe~~g 190 (247)
+....+++.|.+++.+ +...++.| -++... ....+ .+| +..|++..|-++++..|.+.+.+..|
T Consensus 15 e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~~~Grt~eqk~~l~~~l~~~l~~~lg 94 (148)
T 3n4h_A 15 EAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASENHIWVQATIRSGRTEKQKEELLLRLTQEIALILG 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCTTCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccCcEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4456677777777655 45556543 333322 12334 333 34589999999999999999988777
Q ss_pred CCC
Q 025825 191 KVP 193 (247)
Q Consensus 191 ~~p 193 (247)
..|
T Consensus 95 i~~ 97 (148)
T 3n4h_A 95 IPN 97 (148)
T ss_dssp CCG
T ss_pred cCc
Confidence 543
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.41 E-value=27 Score=25.65 Aligned_cols=19 Identities=5% Similarity=0.177 Sum_probs=15.4
Q ss_pred chHHHHHHHHHhhCcEEEc
Q 025825 94 DTDEMFDNLLNKYGKVVYR 112 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~ 112 (247)
-+.+.+.+||++||.++.-
T Consensus 22 ~te~~L~~~F~~~G~i~~v 40 (111)
T 1whx_A 22 TLAAEIQETFSRFGSLGRV 40 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHHhcCCEEEE
Confidence 3568999999999998543
No 65
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=28.25 E-value=28 Score=28.82 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=13.5
Q ss_pred chHHHHHHHHHhhCcE
Q 025825 94 DTDEMFDNLLNKYGKV 109 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~ 109 (247)
-+.++|.++|++||+|
T Consensus 58 vted~L~~~Fs~fG~V 73 (164)
T 1sjr_A 58 VTLDVLHQIFSKFGTV 73 (164)
T ss_dssp CCHHHHHHHHHHHSCE
T ss_pred CCHHHHHHHHHhcCCE
Confidence 3457899999999987
No 66
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=28.10 E-value=64 Score=25.36 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCC------------------------CcccCEEEEEEcCC----HHHHHHHH
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPL------------------------VYWTHFFIIATAFS----RPQIDAIG 178 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~------------------------s~~aDYfVIaTg~S----~RHv~AIA 178 (247)
..+..+++.+++.+.+. +.+|.++|+.+. -.-+|.+||+|..= +.++++..
T Consensus 15 g~T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~l 93 (199)
T 2zki_A 15 GSIVELAKEIGKGAEEA-GAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFL 93 (199)
T ss_dssp SHHHHHHHHHHHHHHHH-SCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC-CCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCccccCccHHHHHHH
Confidence 35677899999998874 558999999874 01479999999654 45666666
Q ss_pred HHHH
Q 025825 179 SRIR 182 (247)
Q Consensus 179 d~V~ 182 (247)
+.+.
T Consensus 94 d~~~ 97 (199)
T 2zki_A 94 DTTA 97 (199)
T ss_dssp HTTH
T ss_pred HHhh
Confidence 6553
No 67
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=27.92 E-value=31 Score=24.58 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=14.9
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.|+.
T Consensus 23 ~t~~~l~~~F~~~G~i~~ 40 (103)
T 2dgu_A 23 VTEEILEKAFSQFGKLER 40 (103)
T ss_dssp CCHHHHHHHHHHHSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 356889999999999854
No 68
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.27 E-value=33 Score=23.89 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=15.2
Q ss_pred chHHHHHHHHHhhCcEEEc
Q 025825 94 DTDEMFDNLLNKYGKVVYR 112 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~~ 112 (247)
-+.+.+.++|++||.+..-
T Consensus 27 ~t~~~l~~~F~~~G~v~~~ 45 (96)
T 2e44_A 27 LQWEVLDSLLVQYGVVESC 45 (96)
T ss_dssp SCHHHHHHHHHHHSCEEEE
T ss_pred CCHHHHHHHHHhcCCeEEE
Confidence 3568899999999987553
No 69
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.21 E-value=33 Score=23.72 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 21 ~t~~~l~~~F~~~G~v~~ 38 (90)
T 2dnp_A 21 CTSQELRSLFERRGRVIE 38 (90)
T ss_dssp CCHHHHHHHHHHHSCEEE
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 356889999999999743
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=27.19 E-value=34 Score=23.21 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|+.||+++
T Consensus 18 ~t~~~l~~~F~~~G~i~ 34 (87)
T 3bs9_A 18 ITTAAIAAAFAPFGRIS 34 (87)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHHhcCCEe
Confidence 35688999999999874
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=27.17 E-value=31 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||.+..
T Consensus 16 ~t~~~l~~~F~~~G~i~~ 33 (88)
T 4a8x_A 16 VTKDHIMEIFSTYGKIKM 33 (88)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhCCCEEE
Confidence 356889999999999853
No 72
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A* 3m2q_A*
Probab=27.17 E-value=2.3e+02 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCe-EEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHH
Q 025825 132 FAVAMARVVSDVKAADI-KVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRD 183 (247)
Q Consensus 132 la~~Ia~aL~dkKAeDI-vVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d 183 (247)
.+.++.+++++.+...+ -..++++...=||+|+...+.+..+++++-..++.
T Consensus 47 ~~~e~~~~~~~~~~~~~~~~y~~~glr~dADlm~w~~~~~~e~lq~~~~~f~r 99 (251)
T 2vxh_A 47 AAEEVKKLIEKHKDNVLVDLYLTRGLETNSDFFFRINAYDLAKAQTFMREFRS 99 (251)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEECTTTCSSCSEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccceeeEEEEEeecCCccEEEEEeCCCHHHHHHHHHHHHh
Confidence 45555566655544333 58999999999999999999999999887666643
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.13 E-value=31 Score=23.82 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.+.++|++||+++
T Consensus 27 ~t~~~l~~~f~~~G~v~ 43 (95)
T 2cqc_A 27 TTERDLREVFSKYGPIA 43 (95)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCee
Confidence 35688999999999874
No 74
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.72 E-value=32 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 24 ~t~~~l~~~f~~~G~i~~ 41 (85)
T 2ytc_A 24 ITETDLRNHFYQFGEIRT 41 (85)
T ss_dssp SCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhCCCEeE
Confidence 356889999999998754
No 75
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=26.64 E-value=44 Score=29.59 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--------cccCEEEEEEcCCH----HHHHHHHHHH
Q 025825 126 DAESLSFAVAMARVVSDVKAADIKVLFVKPLV--------YWTHFFIIATAFSR----PQIDAIGSRI 181 (247)
Q Consensus 126 d~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--------~~aDYfVIaTg~S~----RHv~AIAd~V 181 (247)
...+..+|+.|++.+.+.. .++.++|+.+.. .-+|.+||+|..-. .+++...+.+
T Consensus 267 ~GnT~~la~~i~~~l~~~g-~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l 333 (414)
T 2q9u_A 267 YGTTHRMALALLDGARSTG-CETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYV 333 (414)
T ss_dssp SSHHHHHHHHHHHHHHHTT-CEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhCC-CeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHH
Confidence 3567889999999998754 479999998753 14699999997654 3455444444
No 76
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=26.62 E-value=2.4e+02 Score=22.44 Aligned_cols=68 Identities=12% Similarity=-0.061 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHHHHhC---CCCCeEE--EecCCCCc------ccC--EEEE---EEcCCHHHHHHHHHHHHHHHHHhc
Q 025825 126 DAESLSFAVAMARVVSDV---KAADIKV--LFVKPLVY------WTH--FFII---ATAFSRPQIDAIGSRIRDLAEKEY 189 (247)
Q Consensus 126 d~~s~~la~~Ia~aL~dk---KAeDIvV--LDV~~~s~------~aD--YfVI---aTg~S~RHv~AIAd~V~d~lKe~~ 189 (247)
.+....+++.|.+++.+. ...+|.| .++..-.. ..| -||- -.|++..|-++++..|.+.+.+..
T Consensus 14 ~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~~~I~~~l~~~~ 93 (149)
T 3mf7_A 14 PSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLAQRIVDDVSVAA 93 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHc
Confidence 355677899999998775 4566655 34443322 223 2222 459999999999999999998877
Q ss_pred CCCC
Q 025825 190 GKVP 193 (247)
Q Consensus 190 g~~p 193 (247)
|..|
T Consensus 94 g~~~ 97 (149)
T 3mf7_A 94 EIDR 97 (149)
T ss_dssp TCCG
T ss_pred CCCh
Confidence 7544
No 77
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.58 E-value=93 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHhCC-CCCeEEEecCCC
Q 025825 127 AESLSFAVAMARVVSDVK-AADIKVLFVKPL 156 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkK-AeDIvVLDV~~~ 156 (247)
..+..+++.+++.+.+.. +.+|.++|+...
T Consensus 16 s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 16 SQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred ChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 567788999999998775 467999999864
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.49 E-value=20 Score=26.54 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.+||+.||+|+-
T Consensus 27 ~te~~L~~~F~~fG~v~~ 44 (101)
T 2cq1_A 27 VTETEVIALGLPFGKVTN 44 (101)
T ss_dssp CCHHHHHHTTTTTSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 355889999999999853
No 79
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.46 E-value=24 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.9
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.+|
T Consensus 20 ~t~~~l~~~F~~~G~vv 36 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPL 36 (93)
T ss_dssp CCHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHcCCce
Confidence 35688999999999843
No 80
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=26.45 E-value=1.6e+02 Score=22.05 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Q 025825 131 SFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEK 187 (247)
Q Consensus 131 ~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~d~lKe 187 (247)
.+...+++.|.+.-..+-.+.-+.+ .+|+|+..+.+...+..+++.|.+.+.+
T Consensus 69 ~~L~~~a~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 121 (177)
T 3hva_A 69 LLLGQLAGLMREQFGEEADLARFGD----SIFAALFKGKTPEQAQAALQRLLKKVEN 121 (177)
T ss_dssp HHHHHHHHHHHHHHGGGCEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCceEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 3455666666554333334444443 4677888888899999999999888864
No 81
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=26.40 E-value=35 Score=23.61 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+++.+.++|++||+|+
T Consensus 29 ~~~~l~~~F~~~G~i~ 44 (95)
T 2ywk_A 29 REEILYELFLQAGPLT 44 (95)
T ss_dssp CHHHHHHHHGGGSCEE
T ss_pred CHHHHHHHHHhcCCEE
Confidence 4588999999999874
No 82
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=26.34 E-value=34 Score=24.40 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||++..
T Consensus 35 ~t~~~L~~~F~~~G~v~~ 52 (97)
T 2xnq_A 35 VSKEDLFRIFSPYGHIMQ 52 (97)
T ss_dssp CCHHHHHHHHGGGSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 356889999999999853
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=26.24 E-value=36 Score=24.36 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHhhCcEE
Q 025825 93 EDTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 93 ~~~~e~~~~lf~~~g~~v 110 (247)
+-+.+.+.++|++||+++
T Consensus 23 ~~~~~~L~~~F~~~G~i~ 40 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVV 40 (100)
T ss_dssp HHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHHhcCCEe
Confidence 356789999999999886
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=26.12 E-value=31 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||++.
T Consensus 23 ~t~~~l~~~F~~~G~i~ 39 (87)
T 3s7r_A 23 TSKKDLKDYFTKFGEVV 39 (87)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhCCCEE
Confidence 35688999999999874
No 85
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.00 E-value=2.1e+02 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.4
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 166 ATAFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 166 aTg~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
..|++..|-+++...|.+.+.+..|..|
T Consensus 73 ~~grt~eqK~~l~~~l~~~l~~~lg~~~ 100 (131)
T 2aal_A 73 SRPRSEEQKVCFYKLLTGALERDCGISP 100 (131)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3478999999999999999988777654
No 86
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=33 Score=24.03 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=14.9
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.|..
T Consensus 20 ~t~~~l~~~F~~~G~v~~ 37 (94)
T 2e5g_A 20 VDSAQLSEYFLAFGPVAS 37 (94)
T ss_dssp CCHHHHHHHGGGTSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 356899999999999863
No 87
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=25.71 E-value=81 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.+.
T Consensus 100 ~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 100 MTQKELEQLFSQYGRII 116 (167)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHHhcCCEe
Confidence 35688999999999874
No 88
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.59 E-value=34 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 20 ~t~~~l~~~F~~~G~i~~ 37 (99)
T 1whw_A 20 SSEEDLEKLFSAYGPLSE 37 (99)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhcCCEeE
Confidence 456889999999998753
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=25.14 E-value=36 Score=23.43 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 20 ~t~~~l~~~f~~~G~v~ 36 (92)
T 2dgv_A 20 FTWKMLKDKFNECGHVL 36 (92)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCEE
Confidence 35688999999999875
No 90
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.05 E-value=35 Score=23.81 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 17 ~t~~~l~~~F~~~G~i~ 33 (98)
T 2cpf_A 17 TTEETLKGVFSKVGAIK 33 (98)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999874
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.98 E-value=24 Score=24.74 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=13.7
Q ss_pred chHHHHHHHHHhhCcE
Q 025825 94 DTDEMFDNLLNKYGKV 109 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~ 109 (247)
-+++.+.++|++||.+
T Consensus 27 ~t~~~l~~~F~~~G~v 42 (98)
T 2cqp_A 27 VSIDEILDFFYGYQVI 42 (98)
T ss_dssp CCHHHHHHHTTTSCCC
T ss_pred CCHHHHHHHHHHcCCc
Confidence 4568899999999987
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.94 E-value=35 Score=23.61 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+.+.++|++||.++
T Consensus 21 t~~~l~~~F~~~G~i~ 36 (90)
T 2dnq_A 21 TEQEIRSLFEQYGKVL 36 (90)
T ss_dssp CHHHHHHHHHTSSCEE
T ss_pred CHHHHHHHHHhCCCEE
Confidence 5588999999999874
No 93
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.92 E-value=35 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.8
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|++||.|+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~ 44 (105)
T 1x5u_A 27 VSEPLLWELFLQAGPVVN 44 (105)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 356889999999998854
No 94
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.90 E-value=35 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||+|+
T Consensus 28 ~t~~~l~~~F~~~G~v~ 44 (105)
T 2dh8_A 28 TTQETLRSYFSQYGEVV 44 (105)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 95
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.89 E-value=36 Score=24.13 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=14.8
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.|+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~ 44 (107)
T 2cph_A 27 ANQREIRELFSTFGELKT 44 (107)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHccCCeEE
Confidence 356889999999998854
No 96
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=24.88 E-value=1.1e+02 Score=23.54 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC----cccCEEEEEEcC
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV----YWTHFFIIATAF 169 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s----~~aDYfVIaTg~ 169 (247)
..+..+|+.|++.|.+. .++.++|+.+.. .-+|.+||++..
T Consensus 12 GnT~~vA~~ia~~l~~~--~~v~~~~~~~~~~~~l~~~d~ii~g~pt 56 (169)
T 1czn_A 12 GVTQTIAESIQQEFGGE--SIVDLNDIANADASDLNAYDYLIIGCPT 56 (169)
T ss_dssp SHHHHHHHHHHHHHTST--TTEEEEEGGGCCGGGGGGCSEEEEECCE
T ss_pred cHHHHHHHHHHHHhCcc--cceEEEEhhhCCHhHHhhCCEEEEEecc
Confidence 45777899998888653 478899998642 236899998865
No 97
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=24.85 E-value=44 Score=24.31 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=13.1
Q ss_pred chHHHHHHHHHhhCc
Q 025825 94 DTDEMFDNLLNKYGK 108 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~ 108 (247)
-++|.+.++|++||+
T Consensus 21 ~tee~L~~~F~~~G~ 35 (95)
T 2lkz_A 21 TVVDSIMTALSPYAS 35 (95)
T ss_dssp CCHHHHHHHSTTTCC
T ss_pred CCHHHHHHHHHhhCC
Confidence 467899999999995
No 98
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.82 E-value=33 Score=23.75 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.+.++|++||.++
T Consensus 17 ~t~~~l~~~f~~~G~v~ 33 (95)
T 2dnz_A 17 ITEDMLRGIFEPFGKID 33 (95)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhcCCEe
Confidence 35688999999999874
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.71 E-value=51 Score=22.31 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=14.5
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.+..
T Consensus 17 ~t~~~l~~~f~~~G~i~~ 34 (85)
T 1x4e_A 17 TTDQDLVKLCQPYGKIVS 34 (85)
T ss_dssp CCHHHHHTTSTTTSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 355889999999998754
No 100
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.64 E-value=39 Score=23.90 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.3
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|+.||.|+
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqi_A 27 VTEVLILQLFSQIGPCK 43 (103)
T ss_dssp CCHHHHHHHHHHHSCEE
T ss_pred CCHHHHHHHHHhcCCEe
Confidence 35688999999999874
No 101
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=24.50 E-value=38 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
+..|.+.++|++||+|+
T Consensus 27 ~~~~dl~~~f~k~G~V~ 43 (105)
T 3v4m_A 27 EIVEDVRDECSKYGLVK 43 (105)
T ss_dssp HHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHccCCEE
Confidence 56688899999999985
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=24.47 E-value=28 Score=26.30 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhhCcEEEccCCCCCCC---cccCcchhhHHHHHHHHHHHHhCC
Q 025825 95 TDEMFDNLLNKYGKVVYRRNDQKSPA---AEIDDDAESLSFAVAMARVVSDVK 144 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~~~~~~k~~~---~e~~dd~~s~~la~~Ia~aL~dkK 144 (247)
+.+.+.+||.+||+|+--.-.. +.. .|..+ .+-|+...++|...+
T Consensus 20 te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~----~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 20 DGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTT----REEANKAQMALNNCV 67 (89)
T ss_dssp CCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESS----HHHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECC----HHHHHHHHHHhcCCE
Confidence 3489999999999986433221 111 12233 334555556665544
No 103
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.40 E-value=1.1e+02 Score=19.62 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=23.6
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 166 ATAFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 166 aTg~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
..|+|..|-+++++.|.+.+.+.+|..|
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~~lg~~~ 35 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKETTGASE 35 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3589999999999999999988777543
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=24.33 E-value=47 Score=25.03 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhC-cEEEc
Q 025825 95 TDEMFDNLLNKYG-KVVYR 112 (247)
Q Consensus 95 ~~e~~~~lf~~~g-~~v~~ 112 (247)
+.+.+.++|++|| +|..-
T Consensus 41 te~dL~~~F~~~G~~v~~v 59 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFS 59 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEE
T ss_pred CHHHHHHHHHHhCCeeEEE
Confidence 4588999999999 66543
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=24.28 E-value=41 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+.+.++|+.||.+.
T Consensus 19 t~~~l~~~F~~~G~i~ 34 (89)
T 3ucg_A 19 TAEELEAHFHGCGSVN 34 (89)
T ss_dssp CHHHHHHHHGGGCCEE
T ss_pred CHHHHHHHHHhCCCEE
Confidence 4588999999999874
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=24.05 E-value=38 Score=24.07 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 41 ~t~~~l~~~F~~~G~i~ 57 (107)
T 3ulh_A 41 VSDADIQELFAEFGTLK 57 (107)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=23.92 E-value=91 Score=23.54 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.+.++|++||+|+
T Consensus 58 ~te~~L~~~F~~~G~I~ 74 (129)
T 2kxn_B 58 TTERDLREVFSKYGPIA 74 (129)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.88 E-value=38 Score=23.67 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+++.+.++|++||.++.
T Consensus 15 t~~~l~~~F~~~G~i~~ 31 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVIN 31 (96)
T ss_dssp CHHHHHHHHHTTSCEEE
T ss_pred CHHHHHHHHHhcCCEEE
Confidence 46889999999998754
No 109
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.88 E-value=29 Score=25.40 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHhhCcE
Q 025825 93 EDTDEMFDNLLNKYGKV 109 (247)
Q Consensus 93 ~~~~e~~~~lf~~~g~~ 109 (247)
+++.|.+.++|++||.|
T Consensus 37 ~~~e~~l~~~f~~~G~v 53 (112)
T 2dit_A 37 NEIREDLRVECSKFGQI 53 (112)
T ss_dssp HHHHHHHHHHGGGTSCC
T ss_pred HHHHHHHHHHHHccCCE
Confidence 35678999999999977
No 110
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=23.87 E-value=71 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHh-hCcEEEccCCCCCCCcccCc
Q 025825 93 EDTDEMFDNLLNK-YGKVVYRRNDQKSPAAEIDD 125 (247)
Q Consensus 93 ~~~~e~~~~lf~~-~g~~v~~~~~~k~~~~e~~d 125 (247)
+-++|++-||+|. ||+| +.+....++.
T Consensus 96 ~~rkevlmqllnvkygrv------kdpnggrinr 123 (154)
T 3ha4_A 96 EMRKEVLMQLLNVKYGRV------SDPNGGRVNK 123 (154)
T ss_dssp HHHHHHHHHHHHHHTTSS------CCCTTCCCCH
T ss_pred HHHHHHHHHHHhhhcccc------cCCCCCcccc
Confidence 4678899999998 9999 4344445544
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.85 E-value=41 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.480 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.|+.
T Consensus 37 ~t~~~l~~~F~~~G~i~~ 54 (109)
T 1x4g_A 37 LTDQLMRQTFSPFGQIME 54 (109)
T ss_dssp CCHHHHHHHHHHHSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 356889999999998753
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=23.75 E-value=41 Score=24.07 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.++.
T Consensus 38 ~t~~~l~~~F~~~G~i~~ 55 (110)
T 1oo0_B 38 AQEDEIQEKFCDYGEIKN 55 (110)
T ss_dssp CCHHHHHHHHGGGSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 356889999999998853
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=23.74 E-value=41 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+.+.++|+.||.++
T Consensus 36 t~~~l~~~f~~~G~i~ 51 (106)
T 1p27_B 36 TEEDIHDKFAEYGEIK 51 (106)
T ss_dssp CHHHHHHHHGGGSCEE
T ss_pred CHHHHHHHHhccCCeE
Confidence 5688999999999874
No 114
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.64 E-value=38 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 27 ~t~~~l~~~f~~~G~v~ 43 (103)
T 2cq3_A 27 FRDPDLRQMFGQFGKIL 43 (103)
T ss_dssp CCHHHHHHHGGGTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999874
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.64 E-value=27 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 22 ~t~~~l~~~F~~~G~v~ 38 (92)
T 2dgt_A 22 CTNQELRAKFEEYGPVI 38 (92)
T ss_dssp CCHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999873
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.36 E-value=25 Score=27.29 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.|.+||+.||+|+
T Consensus 43 vte~dL~~lF~~fG~V~ 59 (119)
T 2ad9_A 43 VTEGEVISLGLPFGKVT 59 (119)
T ss_dssp CCHHHHHHHHTTTSCCC
T ss_pred CCHHHHHHHHHhcCCEE
Confidence 35588999999999874
No 117
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.36 E-value=37 Score=24.87 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|+.||.|+
T Consensus 23 ~te~~L~~~F~~~G~v~ 39 (103)
T 1s79_A 23 ATLDDIKEWLEDKGQVL 39 (103)
T ss_dssp CCHHHHHHHHHTSSCEE
T ss_pred CCHHHHHHHHhhcCCEE
Confidence 35688999999999874
No 118
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.30 E-value=43 Score=23.66 Aligned_cols=17 Identities=18% Similarity=0.557 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|+.||.++
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqg_A 27 TTEQDLKEYFSTFGEVL 43 (103)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999874
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=23.20 E-value=30 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||+++.
T Consensus 52 ~t~~~l~~~F~~~G~i~~ 69 (118)
T 2khc_A 52 FTDTDLASTFLPFGNVIS 69 (118)
T ss_dssp CCHHHHHHHTTTSCEEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 356889999999998753
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=23.18 E-value=37 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (105)
T 2dnh_A 27 QSEEDVLRLFQPFGVID 43 (105)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999864
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.01 E-value=32 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.3
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.+.++|++||+++
T Consensus 22 ~t~~~l~~~F~~~G~i~ 38 (99)
T 2dgs_A 22 CGETELREYFKKFGVVT 38 (99)
T ss_dssp CCHHHHHHHHSSSSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=23.00 E-value=44 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+.+.++|+.||.++
T Consensus 22 t~~~l~~~F~~~G~i~ 37 (102)
T 2xs2_A 22 DETEIRSFFARYGSVK 37 (102)
T ss_dssp CHHHHHHHHGGGSCEE
T ss_pred CHHHHHHHHHhCCCeE
Confidence 5688999999999874
No 123
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.90 E-value=37 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|++||.|+.
T Consensus 25 ~t~~~l~~~f~~~G~i~~ 42 (103)
T 2dnm_A 25 TSPDSLRRVFEKYGRVGD 42 (103)
T ss_dssp CCHHHHHHHHTTTSCEEE
T ss_pred CCHHHHHHHHHhcCCEEE
Confidence 456889999999998753
No 124
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=22.88 E-value=94 Score=24.26 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.0
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhcCCCCCC------CCCCCCEEEEEc--------CCEEEEecCcccc
Q 025825 165 IATAFSRPQIDAIGSRIRDLAEKEYGKVPSG------DSKPNSWTLLDF--------GDVVIHIFLPQQR 220 (247)
Q Consensus 165 IaTg~S~RHv~AIAd~V~d~lKe~~g~~p~~------g~~~~~WiLlD~--------GdIVVHIFtpE~R 220 (247)
+..|+|..|.++|++.|.+.+.+.++..+.. +...++|+.-|. .-++|||..-+.|
T Consensus 7 l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gR 76 (136)
T 3mlc_A 7 LTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGR 76 (136)
T ss_dssp EETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTC
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCC
Confidence 4568999999999999999999887754422 345678887753 2367777654444
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.79 E-value=37 Score=24.54 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+++.+.++|+.||.|+.
T Consensus 37 ~t~~~l~~~F~~~G~i~~ 54 (114)
T 2cq4_A 37 IRPRDLEDFFSAVGKVRD 54 (114)
T ss_dssp CCHHHHHHHHTTTSCEEE
T ss_pred CCHHHHHHHHHhCCCEeE
Confidence 356889999999998753
No 126
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=22.76 E-value=2.7e+02 Score=21.56 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHh---CCCCCeEEE--ecCCCC----------ccc-CEEEE----EEcCCHHHHHHHHHHHHHHHH
Q 025825 127 AESLSFAVAMARVVSD---VKAADIKVL--FVKPLV----------YWT-HFFII----ATAFSRPQIDAIGSRIRDLAE 186 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~d---kKAeDIvVL--DV~~~s----------~~a-DYfVI----aTg~S~RHv~AIAd~V~d~lK 186 (247)
+....+++.|.+++.+ ...+|+.++ .+..-. .-+ +|.+| ..|+|..|-+++...|.+.+
T Consensus 14 e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l- 92 (136)
T 3mlc_A 14 EQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL- 92 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-
Confidence 4556677777777765 566776655 222211 012 33332 24899999999999999999
Q ss_pred HhcCCCC
Q 025825 187 KEYGKVP 193 (247)
Q Consensus 187 e~~g~~p 193 (247)
+..|..|
T Consensus 93 ~~lg~~~ 99 (136)
T 3mlc_A 93 APIGVAG 99 (136)
T ss_dssp TTTTCCG
T ss_pred HHcCCCc
Confidence 7766543
No 127
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=22.70 E-value=41 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
+.+.+.++|++||.|+
T Consensus 49 t~~~l~~~F~~~G~i~ 64 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSIN 64 (124)
T ss_dssp CHHHHHHHHHTTSCEE
T ss_pred CHHHHHHHHHhcCCEE
Confidence 5688999999999874
No 128
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.69 E-value=38 Score=24.37 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|.+||+|+
T Consensus 27 ~~~~~l~~~f~~~G~i~ 43 (114)
T 2do0_A 27 VGWKKLKEVFSMAGVVV 43 (114)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999874
No 129
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.24 E-value=39 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.++
T Consensus 29 ~t~~~l~~~F~~~G~i~ 45 (100)
T 2do4_A 29 CTKEELEEICKAHGTVK 45 (100)
T ss_dssp CCHHHHHHHHTTTSCEE
T ss_pred CCHHHHHHHHHhCCCeE
Confidence 45688999999999874
No 130
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.11 E-value=39 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+++.+.++|+.||.++.
T Consensus 14 t~~~l~~~f~~~G~i~~ 30 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLS 30 (83)
T ss_dssp CHHHHHHHHTTSTTEEE
T ss_pred CHHHHHHHHHhcCCeeE
Confidence 45889999999998753
No 131
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.99 E-value=32 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||+++
T Consensus 21 ~t~~~l~~~F~~~G~i~ 37 (99)
T 2div_A 21 MDENFISRAFATMGETV 37 (99)
T ss_dssp CCHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhCCcc
Confidence 35688999999999865
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.93 E-value=44 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=14.8
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|.+||.|+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~ 44 (111)
T 1x4h_A 27 SEEEALGEVLQQFGDLKY 44 (111)
T ss_dssp CCHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhcCCeEE
Confidence 456889999999998754
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=21.81 E-value=46 Score=24.86 Aligned_cols=17 Identities=18% Similarity=0.469 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||+|+
T Consensus 54 ~~~~~l~~~F~~~G~i~ 70 (139)
T 1u6f_A 54 VDEVQLRQLFERYGPIE 70 (139)
T ss_dssp CCHHHHHHHHHHHSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=21.70 E-value=47 Score=23.92 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (115)
T 2dgo_A 27 ITTEDIKAAFAPFGRIS 43 (115)
T ss_dssp CCHHHHHHHHGGGSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 45688999999999874
No 135
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=21.69 E-value=2.6e+02 Score=22.43 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCCcccC--EEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTH--FFIIATAFSRPQIDAIGSRIRDLAEKE 188 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s~~aD--YfVIaTg~S~RHv~AIAd~V~d~lKe~ 188 (247)
+....+.+.+.++...-...+|.|+.--+.-...| .+|.+++..++..-..++.+.+.+|..
T Consensus 61 ma~~~l~~I~~ea~~r~~l~~v~i~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~ 124 (135)
T 4ap8_A 61 MAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAK 124 (135)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEEEECEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcceeehhhcccccCCCeEEEEEEEccCHHHHHHHHHHHHHHHhhc
Confidence 34445555566666667788899888766655555 455566666777777888999999875
No 136
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.62 E-value=1.2e+02 Score=25.11 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCeEEEecCCCC--------------------------------cccCEEEEEEcCC----
Q 025825 127 AESLSFAVAMARVVSDVKAADIKVLFVKPLV--------------------------------YWTHFFIIATAFS---- 170 (247)
Q Consensus 127 ~~s~~la~~Ia~aL~dkKAeDIvVLDV~~~s--------------------------------~~aDYfVIaTg~S---- 170 (247)
..+..+++.+++.|.+..+.+|.++|+.+.. .-+|.+||+|..=
T Consensus 15 s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~ 94 (242)
T 1sqs_A 15 SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNV 94 (242)
T ss_dssp CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSC
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCC
Confidence 4577789999998877635689999988531 2468899999644
Q ss_pred HHHHHHHHHHH
Q 025825 171 RPQIDAIGSRI 181 (247)
Q Consensus 171 ~RHv~AIAd~V 181 (247)
+.++++..|.+
T Consensus 95 p~~lK~~iDr~ 105 (242)
T 1sqs_A 95 SVDTKNFIERI 105 (242)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 56677766666
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.47 E-value=24 Score=24.37 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhhCcEEE
Q 025825 95 TDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v~ 111 (247)
+.+.+.++|++||.++.
T Consensus 18 te~~l~~~F~~~G~i~~ 34 (88)
T 1wf0_A 18 TEDELREFFSQYGDVMD 34 (88)
T ss_dssp CHHHHHHHSTTTSCCCE
T ss_pred CHHHHHHHHHHcCCeeE
Confidence 56889999999998743
No 138
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=21.45 E-value=1.1e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHhCC-CCCeEEEecC
Q 025825 126 DAESLSFAVAMARVVSDVK-AADIKVLFVK 154 (247)
Q Consensus 126 d~~s~~la~~Ia~aL~dkK-AeDIvVLDV~ 154 (247)
...+..+++.+++.+.+.. ..+|.++|+.
T Consensus 16 ~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 16 ESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 4567788999999988775 4789999998
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.39 E-value=45 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 29 ~t~~~l~~~F~~~G~i~ 45 (116)
T 2cqd_A 29 TTDASLRKYFEGFGDIE 45 (116)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhCCCee
Confidence 35688999999999874
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.32 E-value=39 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.+.
T Consensus 11 ~t~~~l~~~F~~~G~i~ 27 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVE 27 (75)
T ss_dssp CCHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999874
No 141
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=21.31 E-value=34 Score=23.66 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=13.5
Q ss_pred chHHHHHHHHHhhCcE
Q 025825 94 DTDEMFDNLLNKYGKV 109 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~ 109 (247)
-+++.+.++|++||.+
T Consensus 27 ~t~~~l~~~F~~~G~i 42 (95)
T 2ek1_A 27 VSIDEILDFFYGYQVI 42 (95)
T ss_dssp CCHHHHHHHTTTSCBC
T ss_pred CCHHHHHHHHHhcCCc
Confidence 4568899999999986
No 142
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=21.26 E-value=35 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.9
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||+++
T Consensus 25 ~t~~~l~~~F~~~G~i~ 41 (106)
T 2dgp_A 25 LDEKDLKPLFEEFGKIY 41 (106)
T ss_dssp CCHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHhcCCee
Confidence 35588999999999864
No 143
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.17 E-value=95 Score=21.66 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=23.6
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 025825 166 ATAFSRPQIDAIGSRIRDLAEKEYGKVP 193 (247)
Q Consensus 166 aTg~S~RHv~AIAd~V~d~lKe~~g~~p 193 (247)
..|+|..|-++|++.|.+.+.+.+|..|
T Consensus 9 ~~Grs~eqK~~L~~~it~~l~~~lg~p~ 36 (76)
T 3ej9_A 9 RYGRTDEQKRALSAGLLRVISEATGEPR 36 (76)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHCcCc
Confidence 3589999999999999999988777543
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=20.94 E-value=43 Score=24.43 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhhCcEEE
Q 025825 94 DTDEMFDNLLNKYGKVVY 111 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v~ 111 (247)
-+.+.+.++|+.||.++.
T Consensus 37 ~te~~L~~~F~~~G~i~~ 54 (109)
T 2rs2_A 37 TTQEGLREYFGQFGEVKE 54 (109)
T ss_dssp CCHHHHHHHHTTTSCEEE
T ss_pred CCHHHHHHHHHccCCeEE
Confidence 456889999999998843
No 145
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=20.93 E-value=20 Score=25.82 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=16.0
Q ss_pred cccccccchhhhcCCCceecCCCCC
Q 025825 217 PQQRAFYNLEEFYGNATTIELPFEN 241 (247)
Q Consensus 217 pE~RefYdLE~LW~da~~i~l~~~~ 241 (247)
-..|+||-|| +.+...+.+|..+
T Consensus 29 g~~~ey~~l~--y~~~~~l~VPv~~ 51 (71)
T 3mlq_E 29 GVKRDYLVLR--YKGEGKLYLPVEQ 51 (71)
T ss_dssp TEEEEEEEEE--ETTTEEEEEESSS
T ss_pred CeeEEEEEEE--ECCCCEEEEEhhh
Confidence 4578999999 5566666666443
No 146
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.78 E-value=31 Score=24.85 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhhCcE
Q 025825 94 DTDEMFDNLLNKYGKV 109 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~ 109 (247)
-+.+.+.++|++||.+
T Consensus 37 ~t~~~l~~~f~~~G~v 52 (115)
T 2cpx_A 37 VTERDLVSLFARFQEK 52 (115)
T ss_dssp CCHHHHHHHTHHHHHS
T ss_pred CCHHHHHHHHHHhCCc
Confidence 4568899999999987
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=20.77 E-value=30 Score=24.37 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 23 ~t~~~l~~~F~~~G~v~ 39 (96)
T 2kvi_A 23 VSKEDLFRIFSPYGHIM 39 (96)
T ss_dssp CCHHHHHHHHTTTCCCC
T ss_pred CCHHHHHHHHHhcCCEE
Confidence 35688999999999873
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=20.66 E-value=38 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.+.
T Consensus 11 ~t~~~l~~~F~~~G~i~ 27 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVD 27 (75)
T ss_dssp CCHHHHHHHHHTTSCCS
T ss_pred CCHHHHHHHHHhcCCEE
Confidence 35688999999999874
No 149
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.58 E-value=2e+02 Score=19.34 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCCCCcccCEEEEEEcCCHHHHHHHHHHHH
Q 025825 132 FAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIR 182 (247)
Q Consensus 132 la~~Ia~aL~dkKAeDIvVLDV~~~s~~aDYfVIaTg~S~RHv~AIAd~V~ 182 (247)
....|++++.+. +.+|.-+.+......+...+.....+..|+..+.+.++
T Consensus 18 ~L~~I~~~la~~-~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~ 67 (88)
T 2ko1_A 18 MTNQITGVISKF-DTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLR 67 (88)
T ss_dssp HHHHHHHHHTTS-SSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-CCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHh
Confidence 366777888776 46777666654333444445556777778776655553
No 150
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.48 E-value=53 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.8
Q ss_pred hHHHHH----HHHHhhCcEEE
Q 025825 95 TDEMFD----NLLNKYGKVVY 111 (247)
Q Consensus 95 ~~e~~~----~lf~~~g~~v~ 111 (247)
+++.+. ++|++||.|+.
T Consensus 22 ~~~~l~~~l~~~F~~~G~v~~ 42 (96)
T 2dgx_A 22 SRKELQQLLQEAFARHGKVKS 42 (96)
T ss_dssp CHHHHHHHHHHHHHHHSCEEE
T ss_pred CHHHHHHHHHHhccccCcEEE
Confidence 446666 99999998753
No 151
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.41 E-value=32 Score=24.38 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 27 ~t~~~l~~~F~~~G~i~ 43 (103)
T 2d9p_A 27 IDDERLRKAFSPFGTIT 43 (103)
T ss_dssp CCHHHHHHTTTTTSCEE
T ss_pred CCHHHHHHHHHhcCCEE
Confidence 45688999999999874
No 152
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=20.21 E-value=54 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhCcEE
Q 025825 95 TDEMFDNLLNKYGKVV 110 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~v 110 (247)
..+.|.++|++||+|+
T Consensus 46 L~~~L~~~F~~~G~I~ 61 (127)
T 2a3j_A 46 LQALLYALASSQGDIL 61 (127)
T ss_dssp HHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHhccCCCeE
Confidence 3445778999999884
No 153
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=20.18 E-value=49 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+.+.+.++|++||.|+
T Consensus 34 ~t~~~l~~~F~~~G~i~ 50 (126)
T 3ex7_B 34 ATEEDIHDKFAEYGEIK 50 (126)
T ss_dssp CCHHHHHHHHHTTSCEE
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35688999999999886
No 154
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=20.18 E-value=35 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhhCcEE
Q 025825 94 DTDEMFDNLLNKYGKVV 110 (247)
Q Consensus 94 ~~~e~~~~lf~~~g~~v 110 (247)
-+++.+.++|++||.|+
T Consensus 37 ~t~~~l~~~F~~~G~i~ 53 (115)
T 2cpz_A 37 FGDQDLLQMFMPFGNVV 53 (115)
T ss_dssp CCHHHHHHHHGGGSCCS
T ss_pred CCHHHHHHHHHhcCCeE
Confidence 35588999999999863
No 155
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=20.18 E-value=43 Score=19.79 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhCcE
Q 025825 95 TDEMFDNLLNKYGKV 109 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~ 109 (247)
.|.+|+.||+.+|.-
T Consensus 2 lDaEFaaIm~~hg~t 16 (23)
T 3dd7_B 2 LDAEFASLFDTLDST 16 (26)
T ss_pred chhHHHHHHHHHhHH
Confidence 367899999999975
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.07 E-value=35 Score=23.67 Aligned_cols=15 Identities=7% Similarity=0.499 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhCcE
Q 025825 95 TDEMFDNLLNKYGKV 109 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~ 109 (247)
+.+.+.++|++||.+
T Consensus 18 t~~~l~~~F~~~G~i 32 (96)
T 1x5t_A 18 DEKLLYDTFSAFGVI 32 (96)
T ss_dssp CHHHHHHHHHTTSCB
T ss_pred CHHHHHHHHHhcCCe
Confidence 468899999999986
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=20.02 E-value=36 Score=24.55 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhhCcE
Q 025825 95 TDEMFDNLLNKYGKV 109 (247)
Q Consensus 95 ~~e~~~~lf~~~g~~ 109 (247)
+++.+.++|++||.|
T Consensus 41 t~~~l~~~F~~~G~v 55 (110)
T 1wf1_A 41 KKSDVETIFSKYGRV 55 (110)
T ss_dssp CHHHHHHHHGGGSCC
T ss_pred CHHHHHHHHHhCCCe
Confidence 578999999999987
Done!