BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025826
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 18/189 (9%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 73 RGNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRT 121
Query: 120 KLGVVLDKEDEMDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLL 172
+ L K DE+DCLV G ++ E + + + + + + + +D YP L+
Sbjct: 122 IGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLV 181
Query: 173 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVID 232
VNIGSGVS++ V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D
Sbjct: 182 VNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQAD 241
Query: 233 MLVGDIYGG 241
LV DIYGG
Sbjct: 242 KLVRDIYGG 250
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 18/189 (9%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 89 RGNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRT 137
Query: 120 KLGVVLDKEDEMDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLL 172
+ L K DE+DCLV G ++ E + + + + + + + +D YP L+
Sbjct: 138 IGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLV 197
Query: 173 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVID 232
VNIGSGVS++ V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D
Sbjct: 198 VNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQAD 257
Query: 233 MLVGDIYGG 241
LV DIYGG
Sbjct: 258 KLVRDIYGG 266
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 18/189 (9%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 87 RGNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRT 135
Query: 120 KLGVVLDKEDEMDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLL 172
+ L K DE+DCLV G ++ E + + + + + + + +D YP L+
Sbjct: 136 IGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLV 195
Query: 173 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVID 232
VNIGSGVS++ V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D
Sbjct: 196 VNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQAD 255
Query: 233 MLVGDIYGG 241
LV DIYGG
Sbjct: 256 KLVRDIYGG 264
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 29/255 (11%)
Query: 14 GDESESQISHLALDIGGSLIKVVYFLRSNXXXXXXXXXXXXXXPV---LEGRLHFAK--- 67
G ++ +DIGG+L+K+VYF + + L + K
Sbjct: 18 GSKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGI 77
Query: 68 ----FETSKIIDC-----LEFIRSKNLHLAGFRHHDAS---ASDKTLIKATGGGAYKFAD 115
E + C L FIR + + F + +S T + ATGGGA+KF +
Sbjct: 78 RDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEE 137
Query: 116 LIKEKLGVVLDKEDEMDCLVTGANFL--------LKAVHQEAFTYVD-GQKEFVQIDQND 166
+ + L K DE+DCL+ G ++ + + E T + QK+ +D +
Sbjct: 138 DFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--N 195
Query: 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQG 226
YP LLVN+GSGVS++ V ++R++GTS+GGGTF GL LLT C++F+E LE++ +G
Sbjct: 196 PYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKG 255
Query: 227 NNRVIDMLVGDIYGG 241
++ +D LV DIYGG
Sbjct: 256 DSTNVDKLVKDIYGG 270
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 22/191 (11%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
+G LHF +F + + ++ KN +S T + ATGGGA+KF + +
Sbjct: 71 KGNLHFIRFPSCAMHRFIQMGSEKNF-----------SSLHTTLCATGGGAFKFEEDFRM 119
Query: 120 KLGVVLDKEDEMDCLVTGANFL--------LKAVHQEAFTYVD-GQKEFVQIDQNDLYPY 170
+ L K DE+DCL+ G ++ + + E T + QK+ +D + YP
Sbjct: 120 IADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--NPYPM 177
Query: 171 LLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRV 230
LLVN+GSGVS++ V ++R++GTS+GGGTF GL LLT C++F+E LE++ +G++
Sbjct: 178 LLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTN 237
Query: 231 IDMLVGDIYGG 241
+D LV DIYGG
Sbjct: 238 VDKLVKDIYGG 248
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 165 NDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSH 224
+DL Y+ N+G+G S+ DG + R+ G GGG GLG LL+ + +L +++
Sbjct: 107 HDLADYIFANVGTGTSLHYFDGQSQ-RRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQ 165
Query: 225 QGNNRVIDMLVGDIYGGSE 243
G+ ID+ V IY +E
Sbjct: 166 HGDRNTIDLKVRHIYKDTE 184
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 165 NDLYPYLLVNIGSGVSMIKVDGDGKFERI 193
+ +YP +L N+G+G S +K DG F R+
Sbjct: 134 SQVYPLVLGNLGAGNSTMKAVFDGLFTRV 162
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 165 NDLYPYLLVNIGSGVSMIKVDGDGKFERI 193
+ +YP +L N+G+G S +K DG F R+
Sbjct: 139 SQVYPLVLGNLGAGNSTMKAVFDGLFTRV 167
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 153 VDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTN 212
DG + F + N L PY+ N V D + I+G S+GGG + +G LTN
Sbjct: 116 ADGYENFTKDLLNSLIPYIESNY-------SVYTDREHRAIAGLSMGGGQSFNIG--LTN 166
Query: 213 CKSFDELLELSHQGNNRVIDMLVGD 237
F + +S N + L D
Sbjct: 167 LDKFAYIGPISAAPNTYPNERLFPD 191
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQ----EAFTYVDGQKEFV--- 160
G Y D+ ++L+KE++MD VT + ++ + + E TY+D FV
Sbjct: 286 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 345
Query: 161 ---------QIDQNDLYPYLL-----VNIGSGVSMIKVD----GDGKFERISG 195
+D N+ Y++ N+G V M VD G G+ SG
Sbjct: 346 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG 398
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQ----EAFTYVDGQKEFV--- 160
G Y D+ ++L+KE++MD VT + ++ + + E TY+D FV
Sbjct: 272 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 331
Query: 161 ---------QIDQNDLYPYLL-----VNIGSGVSMIKVD----GDGKFERISG 195
+D N+ Y++ N+G V M VD G G+ SG
Sbjct: 332 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG 384
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQ----EAFTYVDGQKEFV--- 160
G Y D+ ++L+KE++MD VT + ++ + + E TY+D FV
Sbjct: 271 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 330
Query: 161 ---------QIDQNDLYPYLL-----VNIGSGVSMIKVD----GDGKFERISG 195
+D N+ Y++ N+G V M VD G G+ SG
Sbjct: 331 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG 383
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQ----EAFTYVDGQKEFV--- 160
G Y D+ ++L+KE++MD VT + ++ + + E TY+D FV
Sbjct: 286 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 345
Query: 161 ---------QIDQNDLYPYLL-----VNIGSGVSMIKVD----GDGKFERISG 195
+D N+ Y++ N+G V M VD G G+ SG
Sbjct: 346 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG 398
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQ----EAFTYVDGQKEFV--- 160
G Y D+ ++L+KE++MD VT + ++ + + E TY+D FV
Sbjct: 287 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 346
Query: 161 ---------QIDQNDLYPYLL-----VNIGSGVSMIKVD----GDGKFERISG 195
+D N+ Y++ N+G V M VD G G+ SG
Sbjct: 347 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,259,157
Number of Sequences: 62578
Number of extensions: 296950
Number of successful extensions: 644
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 37
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)