Query 025826
Match_columns 247
No_of_seqs 157 out of 344
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201 Pantothenate kinase Pa 100.0 5.9E-76 1.3E-80 541.4 20.6 227 15-247 17-252 (371)
2 PLN02920 pantothenate kinase 1 100.0 8E-74 1.7E-78 540.1 25.1 235 13-247 10-244 (398)
3 PLN02902 pantothenate kinase 100.0 1.7E-70 3.6E-75 553.6 25.4 246 1-247 26-293 (876)
4 PF03630 Fumble: Fumble ; Int 100.0 2.4E-71 5.2E-76 517.8 14.1 219 22-247 1-234 (341)
5 PTZ00297 pantothenate kinase; 100.0 4E-61 8.6E-66 511.2 23.0 222 18-246 1036-1295(1452)
6 COG5146 PanK Pantothenate kina 100.0 3.3E-62 7.2E-67 437.4 12.3 205 18-247 15-223 (342)
7 TIGR00555 panK_eukar pantothen 100.0 8.7E-58 1.9E-62 416.7 18.5 178 22-247 1-178 (279)
8 PRK13317 pantothenate kinase; 100.0 2.3E-43 5E-48 321.2 18.7 170 22-246 3-172 (277)
9 TIGR03286 methan_mark_15 putat 99.0 4.6E-09 1E-13 100.9 12.3 165 20-238 143-313 (404)
10 TIGR00241 CoA_E_activ CoA-subs 97.5 0.0056 1.2E-07 54.6 14.9 147 23-228 2-153 (248)
11 TIGR03192 benz_CoA_bzdQ benzoy 96.8 0.067 1.5E-06 50.0 15.2 154 21-232 32-192 (293)
12 PRK14101 bifunctional glucokin 96.8 0.01 2.2E-07 60.1 10.5 136 14-180 12-155 (638)
13 PRK12408 glucokinase; Provisio 96.4 0.0098 2.1E-07 55.6 7.3 134 23-180 18-158 (336)
14 PRK00292 glk glucokinase; Prov 96.4 0.029 6.3E-07 51.4 10.0 131 23-181 4-141 (316)
15 PF01869 BcrAD_BadFG: BadF/Bad 96.3 0.051 1.1E-06 48.6 11.0 70 101-196 65-134 (271)
16 PRK13318 pantothenate kinase; 95.9 0.22 4.8E-06 44.7 13.3 28 169-198 125-152 (258)
17 TIGR02261 benz_CoA_red_D benzo 95.5 0.55 1.2E-05 43.3 14.4 146 23-227 3-159 (262)
18 TIGR00744 ROK_glcA_fam ROK fam 95.5 0.9 2E-05 41.2 15.6 55 112-186 88-142 (318)
19 COG1940 NagC Transcriptional r 95.0 1.1 2.5E-05 40.7 14.6 56 111-186 96-151 (314)
20 PF02685 Glucokinase: Glucokin 94.2 0.3 6.4E-06 45.9 9.1 132 24-186 1-148 (316)
21 PRK13321 pantothenate kinase; 94.1 2.1 4.5E-05 38.5 14.1 30 168-199 124-153 (256)
22 smart00732 YqgFc Likely ribonu 93.1 0.54 1.2E-05 35.2 7.3 18 23-40 3-20 (99)
23 PTZ00288 glucokinase 1; Provis 93.0 0.96 2.1E-05 44.1 10.5 113 16-142 21-150 (405)
24 PRK09557 fructokinase; Reviewe 92.8 3.8 8.2E-05 37.1 13.6 54 111-184 86-139 (301)
25 TIGR01175 pilM type IV pilus a 92.4 0.61 1.3E-05 43.0 7.9 35 101-135 284-320 (348)
26 TIGR00749 glk glucokinase, pro 92.3 1.4 3.1E-05 40.5 10.3 57 115-181 83-140 (316)
27 PRK13320 pantothenate kinase; 91.8 4.4 9.5E-05 36.6 12.6 32 167-200 113-144 (244)
28 COG1924 Activator of 2-hydroxy 91.4 4.9 0.00011 39.2 13.0 155 19-233 133-295 (396)
29 PRK09698 D-allose kinase; Prov 91.2 8.4 0.00018 34.8 13.9 27 111-137 94-120 (302)
30 PRK13326 pantothenate kinase; 89.2 17 0.00036 33.4 14.1 31 168-200 126-156 (262)
31 PRK13331 pantothenate kinase; 89.0 8.7 0.00019 35.2 12.1 30 167-198 112-141 (251)
32 PRK10719 eutA reactivating fac 89.0 3.4 7.4E-05 41.2 10.0 156 20-201 5-179 (475)
33 PF11104 PilM_2: Type IV pilus 88.5 1.8 4E-05 40.2 7.6 35 100-134 275-311 (340)
34 PRK13310 N-acetyl-D-glucosamin 88.1 17 0.00037 32.9 13.4 56 111-186 86-141 (303)
35 TIGR00671 baf pantothenate kin 87.6 7.4 0.00016 35.1 10.6 30 168-199 116-145 (243)
36 PRK13311 N-acetyl-D-glucosamin 87.3 21 0.00045 31.7 13.6 56 111-186 86-141 (256)
37 PF05378 Hydant_A_N: Hydantoin 87.3 0.89 1.9E-05 39.1 4.3 18 23-40 1-18 (176)
38 PRK13324 pantothenate kinase; 84.9 31 0.00067 31.5 14.1 32 167-200 123-154 (258)
39 PF00480 ROK: ROK family; Int 84.8 20 0.00044 29.4 11.2 124 25-186 1-136 (179)
40 PRK05082 N-acetylmannosamine k 82.4 37 0.00079 30.5 14.1 53 111-184 86-138 (291)
41 PF06723 MreB_Mbl: MreB/Mbl pr 82.0 0.97 2.1E-05 42.8 2.4 45 101-145 275-322 (326)
42 PRK15080 ethanolamine utilizat 77.7 28 0.00061 31.5 10.3 51 170-222 137-188 (267)
43 PRK13322 pantothenate kinase; 76.5 47 0.001 30.0 11.4 30 168-199 116-145 (246)
44 PRK09604 UGMP family protein; 75.9 13 0.00028 34.9 7.8 97 114-233 95-196 (332)
45 PRK00109 Holliday junction res 72.6 33 0.00072 28.3 8.7 91 20-143 3-110 (138)
46 TIGR00329 gcp_kae1 metallohydr 71.0 25 0.00055 32.5 8.4 99 113-232 91-193 (305)
47 TIGR03723 bact_gcp putative gl 70.3 20 0.00043 33.4 7.6 110 101-232 72-194 (314)
48 COG2971 Predicted N-acetylgluc 68.3 40 0.00088 31.9 9.1 39 170-209 119-162 (301)
49 PRK13928 rod shape-determining 67.6 7.4 0.00016 36.0 4.2 44 102-145 278-324 (336)
50 TIGR02529 EutJ ethanolamine ut 67.1 51 0.0011 29.4 9.3 34 170-203 110-143 (239)
51 PRK13328 pantothenate kinase; 66.8 91 0.002 28.3 11.0 32 168-201 118-149 (255)
52 PRK13930 rod shape-determining 62.4 8.8 0.00019 35.1 3.6 45 102-146 283-330 (335)
53 PRK13929 rod-share determining 61.5 8.3 0.00018 35.9 3.3 43 102-144 281-326 (335)
54 TIGR03739 PRTRC_D PRTRC system 57.2 11 0.00024 34.9 3.3 41 101-141 275-317 (320)
55 PRK03011 butyrate kinase; Prov 56.9 20 0.00043 34.3 5.1 25 168-193 176-200 (358)
56 PRK13917 plasmid segregation p 54.3 15 0.00032 34.6 3.7 43 101-143 293-335 (344)
57 PLN02666 5-oxoprolinase 52.8 19 0.00042 40.1 4.7 34 19-70 7-40 (1275)
58 PRK13927 rod shape-determining 50.3 18 0.0004 33.1 3.6 44 102-145 279-325 (334)
59 COG0145 HyuA N-methylhydantoin 49.6 24 0.00052 36.8 4.6 21 22-42 3-23 (674)
60 PF02782 FGGY_C: FGGY family o 47.7 39 0.00084 28.1 4.9 40 100-139 150-191 (198)
61 TIGR00904 mreB cell shape dete 46.3 23 0.0005 32.6 3.6 43 102-144 282-327 (333)
62 PF06406 StbA: StbA protein; 45.8 25 0.00055 32.6 3.8 38 101-138 274-315 (318)
63 TIGR01315 5C_CHO_kinase FGGY-f 44.9 41 0.00088 33.5 5.3 43 101-143 445-489 (541)
64 KOG3040 Predicted sugar phosph 44.3 2.2E+02 0.0049 26.2 9.3 133 59-214 14-175 (262)
65 PF03309 Pan_kinase: Type III 43.2 36 0.00078 29.5 4.1 30 167-198 119-148 (206)
66 PF00370 FGGY_N: FGGY family o 43.1 49 0.0011 28.8 5.0 18 23-40 2-19 (245)
67 PRK09605 bifunctional UGMP fam 40.4 1.2E+02 0.0026 29.9 7.8 105 101-228 71-186 (535)
68 PF01548 DEDD_Tnp_IS110: Trans 38.7 86 0.0019 24.9 5.4 43 24-84 2-46 (144)
69 TIGR01311 glycerol_kin glycero 38.4 82 0.0018 30.8 6.2 19 23-41 3-21 (493)
70 PF06277 EutA: Ethanolamine ut 38.3 25 0.00053 35.3 2.6 152 21-200 3-175 (473)
71 PRK13325 bifunctional biotin-- 37.5 4.8E+02 0.01 26.8 12.3 32 167-200 448-479 (592)
72 PRK04123 ribulokinase; Provisi 37.3 49 0.0011 32.8 4.5 42 101-142 440-484 (548)
73 TIGR01314 gntK_FGGY gluconate 37.3 27 0.00059 34.2 2.7 19 23-41 2-20 (505)
74 PRK10640 rhaB rhamnulokinase; 36.6 66 0.0014 31.5 5.2 41 101-142 377-419 (471)
75 TIGR02259 benz_CoA_red_A benzo 35.4 23 0.0005 35.1 1.8 95 101-227 231-329 (432)
76 PRK10331 L-fuculokinase; Provi 34.7 62 0.0013 31.4 4.7 42 101-142 391-434 (470)
77 COG1077 MreB Actin-like ATPase 32.3 32 0.0007 33.1 2.2 45 101-145 285-332 (342)
78 TIGR02259 benz_CoA_red_A benzo 30.2 4.4E+02 0.0094 26.4 9.6 19 23-41 4-22 (432)
79 PF00349 Hexokinase_1: Hexokin 29.8 50 0.0011 29.1 2.9 24 18-41 60-83 (206)
80 TIGR01315 5C_CHO_kinase FGGY-f 29.5 42 0.00091 33.4 2.6 20 23-42 2-21 (541)
81 PF11104 PilM_2: Type IV pilus 29.2 3.6E+02 0.0079 24.9 8.7 149 59-226 72-237 (340)
82 PF14450 FtsA: Cell division p 28.3 54 0.0012 25.9 2.6 17 24-40 2-18 (120)
83 TIGR02628 fuculo_kin_coli L-fu 28.2 91 0.002 30.3 4.6 43 101-143 395-439 (465)
84 PRK10939 autoinducer-2 (AI-2) 28.2 96 0.0021 30.6 4.9 42 101-142 411-454 (520)
85 PF01968 Hydantoinase_A: Hydan 28.1 50 0.0011 30.4 2.7 21 19-39 75-95 (290)
86 PRK15080 ethanolamine utilizat 28.0 1.2E+02 0.0026 27.4 5.1 27 101-127 223-251 (267)
87 TIGR03722 arch_KAE1 universal 27.9 4.9E+02 0.011 24.1 9.3 104 101-228 68-183 (322)
88 cd04373 RhoGAP_p190 RhoGAP_p19 27.2 73 0.0016 27.3 3.4 68 72-153 18-90 (185)
89 TIGR01234 L-ribulokinase L-rib 26.9 1E+02 0.0022 30.6 4.7 42 101-142 437-481 (536)
90 TIGR03123 one_C_unchar_1 proba 26.8 40 0.00087 32.0 1.8 18 22-39 129-146 (318)
91 PRK15027 xylulokinase; Provisi 26.5 1E+02 0.0023 30.0 4.7 42 101-142 388-432 (484)
92 PRK00047 glpK glycerol kinase; 26.4 1.1E+02 0.0023 30.0 4.8 42 101-142 405-448 (498)
93 COG5026 Hexokinase [Carbohydra 25.9 1.9E+02 0.0041 29.1 6.3 27 14-41 69-95 (466)
94 PF04260 DUF436: Protein of un 25.2 36 0.00078 29.8 1.1 13 22-34 121-133 (172)
95 TIGR01311 glycerol_kin glycero 25.1 1.1E+02 0.0024 29.9 4.6 42 101-142 401-444 (493)
96 TIGR02529 EutJ ethanolamine ut 25.1 61 0.0013 28.9 2.6 26 101-126 196-223 (239)
97 TIGR03882 cyclo_dehyd_2 bacter 24.9 2.1E+02 0.0046 24.8 5.9 31 196-226 25-55 (193)
98 PRK00047 glpK glycerol kinase; 24.7 57 0.0012 31.9 2.5 20 23-42 7-26 (498)
99 PF08967 DUF1884: Domain of un 24.4 36 0.00078 26.5 0.9 33 101-133 28-61 (85)
100 PF03744 BioW: 6-carboxyhexano 24.3 80 0.0017 29.0 3.2 25 58-83 210-234 (239)
101 PF14034 Spore_YtrH: Sporulati 24.2 56 0.0012 26.3 1.9 31 195-225 12-42 (102)
102 TIGR02627 rhamnulo_kin rhamnul 23.6 1.4E+02 0.0031 28.8 5.0 41 101-142 389-431 (454)
103 COG0837 Glk Glucokinase [Carbo 23.4 4E+02 0.0087 25.6 7.7 139 19-183 4-149 (320)
104 PRK11678 putative chaperone; P 23.2 67 0.0014 31.6 2.7 42 101-142 401-445 (450)
105 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 23.1 92 0.002 27.3 3.3 68 72-153 12-83 (206)
106 PTZ00340 O-sialoglycoprotein e 22.0 2.6E+02 0.0055 26.9 6.3 103 101-228 72-189 (345)
107 COG4972 PilM Tfp pilus assembl 22.0 1.3E+02 0.0027 29.3 4.1 60 65-135 264-325 (354)
108 cd04390 RhoGAP_ARHGAP22_24_25 21.4 1E+02 0.0022 26.5 3.2 69 71-153 24-96 (199)
109 TIGR01204 bioW 6-carboxyhexano 20.4 1.1E+02 0.0024 28.1 3.2 25 58-83 203-227 (232)
110 cd04374 RhoGAP_Graf RhoGAP_Gra 20.3 1.8E+02 0.004 25.4 4.6 71 71-154 30-109 (203)
111 COG2441 Predicted butyrate kin 20.1 85 0.0018 30.1 2.5 62 168-229 163-251 (374)
112 PLN02669 xylulokinase 20.0 96 0.0021 31.3 3.1 43 101-143 447-491 (556)
No 1
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-76 Score=541.38 Aligned_cols=227 Identities=54% Similarity=0.886 Sum_probs=196.3
Q ss_pred CCCCCCCCeEEEEcCcceeEEEEEeecCCCCCCcc-----CCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccC
Q 025826 15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVD-----DSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG 89 (247)
Q Consensus 15 ~~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~-----~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~ 89 (247)
++ .+.++|||+||||||+|+|||++.+....++. ....+..+...+||+|++|++.+|+.|++||+.+..+...
T Consensus 17 ~~-~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~~~n~~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~~ 95 (371)
T KOG2201|consen 17 NN-KPMISHFAMDIGGTLVKLVYFSPVDISPEEEESEVILNGAYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHPV 95 (371)
T ss_pred cc-cccCceEEEecCCcEEEEEEEecCCCCcchhhhhcccccccccccccccEEEEEEeeecCccchhHHhhcchhhccc
Confidence 45 78899999999999999999999886332211 1222334568899999999999999999999987655421
Q ss_pred ccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeee----cCCC
Q 025826 90 FRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQ----IDQN 165 (247)
Q Consensus 90 ~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~----~~~~ 165 (247)
++.....++|+|||||||||+++|++++++++.|+|||+|||+|++||++++|.|||||.+...+... .+.+
T Consensus 96 ----k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d 171 (371)
T KOG2201|consen 96 ----KNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLD 171 (371)
T ss_pred ----cccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccC
Confidence 11111247899999999999999999999999999999999999999999999999999988654321 2235
Q ss_pred CCccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCc
Q 025826 166 DLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYS 245 (247)
Q Consensus 166 ~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~ 245 (247)
++||||||||||||||+||++|++|+||||||||||||||||+|||||++|||||+||++|||++|||||+||||| +|+
T Consensus 172 ~~yPyLLVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg-~y~ 250 (371)
T KOG2201|consen 172 SPYPYLLVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGG-DYS 250 (371)
T ss_pred CCCceEEEEcCCCeEEEEEecCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCc-cHh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CC
Q 025826 246 KV 247 (247)
Q Consensus 246 ki 247 (247)
++
T Consensus 251 ~f 252 (371)
T KOG2201|consen 251 RF 252 (371)
T ss_pred hc
Confidence 75
No 2
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=8e-74 Score=540.14 Aligned_cols=235 Identities=77% Similarity=1.242 Sum_probs=203.8
Q ss_pred CCCCCCCCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccCccc
Q 025826 13 NGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRH 92 (247)
Q Consensus 13 ~~~~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~ 92 (247)
+..++++.++||||||||||+|||||++................+..+|||||++|||++|++|++||+++.++..+..+
T Consensus 10 ~~~~~~~~~~~~a~Diggsl~Klvy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~~~~ 89 (398)
T PLN02920 10 DGNSSPIQISHLALDIGGSLIKLVYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLHHGGFQH 89 (398)
T ss_pred CcCCCccceeEEEEEcCCceEEEEEEeccCCccccccccccccccCCCceEEEEEecccCHHHHHHHHHhcccccccccc
Confidence 45777888999999999999999999987642211111111123568999999999999999999999998665432222
Q ss_pred cCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEE
Q 025826 93 HDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 172 (247)
Q Consensus 93 ~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLl 172 (247)
.+.......+|++|||||+||++.|++++++++.|+|||+|+++|++||++++|+|+|+|.+.+++|++.+..++|||||
T Consensus 90 ~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyPyLL 169 (398)
T PLN02920 90 HENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYPYLL 169 (398)
T ss_pred ccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccCceEE
Confidence 11112235789999999999999999999999999999999999999999999999999999998998888788999999
Q ss_pred EecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCcCC
Q 025826 173 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 247 (247)
Q Consensus 173 VNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~ki 247 (247)
|||||||||+||+++++|+|||||+|||||||||++|||+++|||||++||++||+++|||+|+|||||++|+++
T Consensus 170 VNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~ 244 (398)
T PLN02920 170 VNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKI 244 (398)
T ss_pred EEcCCCEEEEEEeCCCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998899875
No 3
>PLN02902 pantothenate kinase
Probab=100.00 E-value=1.7e-70 Score=553.65 Aligned_cols=246 Identities=69% Similarity=1.132 Sum_probs=212.0
Q ss_pred CCCCCcccCCCCC--------CCCCCCCCCeEEEEcCcceeEEEEEeecCCCCCC---cc---------CCCCCCCCCCC
Q 025826 1 MDVKKPASQENLN--------GDESESQISHLALDIGGSLIKVVYFLRSNGSGGS---VD---------DSGKKSDPVLE 60 (247)
Q Consensus 1 ~~~~~~~~~~~~~--------~~~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~---~~---------~~~~~~~~~~~ 60 (247)
+||..+.+++.+. ||| ++.++|||+||||||+|||||++...+... .. +..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~i~lp~~-~~~i~h~~~digg~l~klvy~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (876)
T PLN02902 26 LDLSKAAIQGNLEERDPTILLPNQ-SDDISHLALDIGGSLIKLVYFSRHEDRSTDDKRKRTIKERLGITNGNRRSYPILG 104 (876)
T ss_pred cCccccccccccccCCCCccCCCC-CCcceeEEEecCCceEEEEEEeccCCccccccccccccccccccccccccccCCC
Confidence 3566666666555 366 999999999999999999999987643221 00 12233356789
Q ss_pred CeEEEEEeeccCHHHHHHHHHhhcccccCcccc--CCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhH
Q 025826 61 GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHH--DASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGA 138 (247)
Q Consensus 61 g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~~--~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~ 138 (247)
|||||++|||++|++|++|++++..+..+++.. .+......+|++||||||||+++|++++++++.|+|||+|+++|+
T Consensus 105 grl~F~~fet~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~DEm~~li~Gl 184 (876)
T PLN02902 105 GRLHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGA 184 (876)
T ss_pred ceEEEEEcCcccHHHHHHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeecHHHHHHHHH
Confidence 999999999999999999999987765332211 111222478999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHH
Q 025826 139 NFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDE 218 (247)
Q Consensus 139 ~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fde 218 (247)
+||++++++|+|+|....++|++.+..++||||||||||||||+||+++++|+|||||+|||||||||++||||++||||
T Consensus 185 ~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdE 264 (876)
T PLN02902 185 NFLLKAIRHEAFTHMEGEKEFVQIDQNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDE 264 (876)
T ss_pred HHHHhhCcchheeeccccccccccCccCCCceEEEEcCCceEEEEEecCCcEEEecccccccHhHHHHHHHHcCCCCHHH
Confidence 99999999999999988888888887899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcCceEeeeecCCCCCcCC
Q 025826 219 LLELSHQGNNRVIDMLVGDIYGGSEYSKV 247 (247)
Q Consensus 219 il~lA~~Gd~~~vDmlV~DIYGg~dY~ki 247 (247)
|++||++||+++|||+|+|||||++|+++
T Consensus 265 ll~LA~~Gd~~~vDllVgDIYGg~~y~~~ 293 (876)
T PLN02902 265 LLELSQRGDNSAIDMLVGDIYGGMDYSKI 293 (876)
T ss_pred HHHHHhcCCccccCeeeccccCCCCcCCC
Confidence 99999999999999999999998899875
No 4
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=2.4e-71 Score=517.83 Aligned_cols=219 Identities=56% Similarity=0.998 Sum_probs=173.8
Q ss_pred CeEEEEcCcceeEEEEEeecCCCCCCcc-----------CCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccCc
Q 025826 22 SHLALDIGGSLIKVVYFLRSNGSGGSVD-----------DSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGF 90 (247)
Q Consensus 22 ~~~giDIGGSL~KlvYf~~~~~~~~~~~-----------~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~ 90 (247)
+||||||||||||||||+|.+....... ..........+|+|||++|||++||+||+|++++......
T Consensus 1 ~~faiDIGGTL~KlVYfs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~Fi~FeT~~ie~~i~fi~~~~~~~~~- 79 (341)
T PF03630_consen 1 SHFAIDIGGTLVKLVYFSPVDSSPDNQDKEDDSLRSLRREMHEIESKERGGRLHFIKFETKNIEECIDFIKENILEHKG- 79 (341)
T ss_dssp -EEEEEE-SSEEEEEEEEESS--CHHHHHCHHHHHHHHH-EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHS--S-TT-
T ss_pred CeEEEEcCCceEEEEEEeecCCCcccccccccchhhhhhhhccccccCcCCEEEEEEechhhHHHHHHHHHHhhhhccc-
Confidence 5999999999999999999875321100 0001113568899999999999999999999996543211
Q ss_pred cccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCC-e---eeeecCCCC
Q 025826 91 RHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQ-K---EFVQIDQND 166 (247)
Q Consensus 91 ~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~-~---~~~~~~~~~ 166 (247)
......+|+||||||+||+++|++++++++.|+|||+|||+|++||++++|+|+|+|++.. . ++.+.+..+
T Consensus 80 -----~~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~~ 154 (341)
T PF03630_consen 80 -----ISQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNSD 154 (341)
T ss_dssp -----GGGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTSS
T ss_pred -----cCccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCCC
Confidence 1112478999999999999999999999999999999999999999999999999999653 1 235667789
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCcC
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSK 246 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~k 246 (247)
+||||||||||||||++|+++++|+|||||+|||||||||++||||++||||+++||++||+++|||+|+||||+ +|++
T Consensus 155 ~~PyllvniGsGvSi~~v~~~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~-~y~~ 233 (341)
T PF03630_consen 155 IYPYLLVNIGSGVSILKVEGPNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGG-DYNK 233 (341)
T ss_dssp -SSEEEEEESSSEEEEEEEETTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS--BGG
T ss_pred CCcEEEEEcCCceEEEEEeCCCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCC-Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 8975
Q ss_pred C
Q 025826 247 V 247 (247)
Q Consensus 247 i 247 (247)
+
T Consensus 234 ~ 234 (341)
T PF03630_consen 234 I 234 (341)
T ss_dssp G
T ss_pred C
Confidence 3
No 5
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=4e-61 Score=511.19 Aligned_cols=222 Identities=36% Similarity=0.613 Sum_probs=185.2
Q ss_pred CCCCCeEEEEcCcceeEEEEEeecCC---------CCCCcc-CCC-----------------CCCCCCCCCeEEEEEeec
Q 025826 18 ESQISHLALDIGGSLIKVVYFLRSNG---------SGGSVD-DSG-----------------KKSDPVLEGRLHFAKFET 70 (247)
Q Consensus 18 ~~~~~~~giDIGGSL~KlvYf~~~~~---------~~~~~~-~~~-----------------~~~~~~~~g~l~F~~F~t 70 (247)
-+.--.++||||||+||+||+.|... |....+ ..| +++.+..+|+|||++|||
T Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~f~~f~t 1115 (1452)
T PTZ00297 1036 FSLQVPVTIDIGGTFAKIAYVQPPGGFAFPTYIVHEASSLSEKLGLRTFHFFADAEAAESELRTRPHSRVGTLRFAKIPS 1115 (1452)
T ss_pred ccccCceEEecCceeEEEEEEeCCCCCCCcchhhhhhhhhhhccCccccccccChHHhhhhhccCCCCCceEEEEEEecc
Confidence 45556899999999999999999842 111111 111 222357899999999999
Q ss_pred cCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcce
Q 025826 71 SKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAF 150 (247)
Q Consensus 71 ~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f 150 (247)
++|++||+||+++..+... ......+|+||||||+||+++|++++|+++.|+|||+|+++|++||++++|+|+|
T Consensus 1116 ~~i~~~~~~l~~~~~~~~~------~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~~~~f 1189 (1452)
T PTZ00297 1116 KQIPDFADYLAGSHAINYY------KPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAPESIF 1189 (1452)
T ss_pred cCHHHHHHHHHhhhhhccc------CcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCCceEE
Confidence 9999999999987543221 1112478999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCee-----ee--ecCCCCCccEEEEecCCceEEEEEeCC-CceEEeeccccCchhHHhhhhhhcCCCCHHHHHH-
Q 025826 151 TYVDGQKE-----FV--QIDQNDLYPYLLVNIGSGVSMIKVDGD-GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLE- 221 (247)
Q Consensus 151 ~~~~~~~~-----~~--~~~~~~~~PyLlVNIGSGvSi~kv~~~-~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~- 221 (247)
+|+....+ +. +.+..++||||||||||||||+||+++ ++|+|||||+|||||||||++||||++|||||++
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~llvNIGSGvSi~kv~~~~~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~ 1269 (1452)
T PTZ00297 1190 TVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSGISIIKCLGPDGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEI 1269 (1452)
T ss_pred EeccccccccccccccCccccCCCCceEEEEccCceEEEEEecCCCcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHH
Confidence 99874321 11 123457999999999999999999997 6899999999999999999999999999999998
Q ss_pred --HHhCCCCCcCceEeeeecCCCCCcC
Q 025826 222 --LSHQGNNRVIDMLVGDIYGGSEYSK 246 (247)
Q Consensus 222 --lA~~Gd~~~vDmlV~DIYGg~dY~k 246 (247)
||++|||+||||||+|||| .+|.+
T Consensus 1270 ~~la~~Gd~~~vDllVgDIyg-~~~~~ 1295 (1452)
T PTZ00297 1270 MRLDGPGDNKNVDLLVGDIYG-YNAKD 1295 (1452)
T ss_pred HHHhhCCCccccceEEeeccC-CCccc
Confidence 7999999999999999999 47754
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-62 Score=437.41 Aligned_cols=205 Identities=42% Similarity=0.753 Sum_probs=181.2
Q ss_pred CCCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccCccccCCCC
Q 025826 18 ESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASA 97 (247)
Q Consensus 18 ~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~~~~~~ 97 (247)
...++++||||||||+|+|| +| ....||.|.+++|++||+|++|+.+..-. +.+..
T Consensus 15 ~~n~~~vaiDiGGtLaKvv~-sp-----------------~~snrl~F~t~eT~kId~~ve~l~~li~~------h~k~C 70 (342)
T COG5146 15 ANNVMKVAIDIGGTLAKVVQ-SP-----------------SQSNRLTFKTEETKKIDQVVEWLNNLIQQ------HEKLC 70 (342)
T ss_pred ccceEEEEEecCceeeeeee-Cc-----------------ccccceeeehHhhhhHHHHHHHHHHHHHH------HHhhh
Confidence 46689999999999999999 53 24568999999999999999999753211 11122
Q ss_pred CCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCee--eee--cCCCCCccEEEE
Q 025826 98 SDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKE--FVQ--IDQNDLYPYLLV 173 (247)
Q Consensus 98 ~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~--~~~--~~~~~~~PyLlV 173 (247)
.....+.|||||||||+|.+.+.+.+++.|++||+|++.|++|+..+||.|+|++++...+ +.. -+.+++|||+||
T Consensus 71 ~~~~~liatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 71 LTKITLIATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hheeeEEecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeeccHHHeeeeccccchhhhhhhhccccccceeeE
Confidence 3357899999999999999999999999999999999999999999999999999987654 221 124679999999
Q ss_pred ecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCcCC
Q 025826 174 NIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 247 (247)
Q Consensus 174 NIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~ki 247 (247)
||||||||+||++|++|+|||||++||||+|||.+|||++.+||+|++||+.|||+.|||+|+|||| +||+++
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg-~dy~~~ 223 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYG-DDYEEP 223 (342)
T ss_pred eccCCeEEEEecCcchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhcc-CccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 599875
No 7
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=100.00 E-value=8.7e-58 Score=416.69 Aligned_cols=178 Identities=53% Similarity=0.933 Sum_probs=163.5
Q ss_pred CeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccCccccCCCCCCce
Q 025826 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (247)
Q Consensus 22 ~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~ 101 (247)
+|+||||||||||+||++ ..+++||.+|||.++++|++|+++...... ...
T Consensus 1 ~~iGiDiGgT~~Kiv~~~-------------------~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 51 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEE-------------------PKGRRKFKTFETTNIDKFIEWLKNQIHRHS----------RIT 51 (279)
T ss_pred CeEEEEeCcceEEEEEEc-------------------CCCcEEEEEeecccHHHHHHHHHHHHHhhc----------Cce
Confidence 589999999999999976 467899999999999999999987643211 137
Q ss_pred EEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEE
Q 025826 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSM 181 (247)
Q Consensus 102 ~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi 181 (247)
+|++|||||+||++.|...++++++|+|||+|+++|++||+++.|+ .++||||+|||||||||
T Consensus 52 ~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~-----------------~~~~p~llvnIGsGvSi 114 (279)
T TIGR00555 52 TLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPK-----------------DDIYPYLLVNIGTGTSI 114 (279)
T ss_pred EEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccC-----------------CCCCceEEEEecCCeEE
Confidence 7999999999999999999999999999999999999999976652 47999999999999999
Q ss_pred EEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCcCC
Q 025826 182 IKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 247 (247)
Q Consensus 182 ~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~ki 247 (247)
++|+++ +|+|||||++||||||||++||||++||+|+++||++||+++|||+|+||||+ +|+++
T Consensus 115 ~~v~~~-~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~-~y~~~ 178 (279)
T TIGR00555 115 LYVDGD-NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGG-DYSES 178 (279)
T ss_pred EEEcCc-cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCC-CCCCC
Confidence 999997 99999999999999999999999999999999999999999999999999996 89864
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=100.00 E-value=2.3e-43 Score=321.23 Aligned_cols=170 Identities=34% Similarity=0.573 Sum_probs=152.5
Q ss_pred CeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccCccccCCCCCCce
Q 025826 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (247)
Q Consensus 22 ~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~ 101 (247)
.++|||||||++|+||++ ..++++|.+|+++..+.+++|+.+.. ...
T Consensus 3 ~~iGIDiGstt~K~v~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~ 49 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLE-------------------EKKQRTFKTEYSAEGKKVIDWLINLQ--------------DIE 49 (277)
T ss_pred ceEEEEeCcccEEEEEEc-------------------CCCeEEEEeeccHHHHHHHHHhhccC--------------Cce
Confidence 579999999999999988 35678999999999999999985421 136
Q ss_pred EEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEE
Q 025826 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSM 181 (247)
Q Consensus 102 ~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi 181 (247)
.|++|||||+++++++ .++++++|++||+|+++|++||+++.. .+.+||++||||||+||
T Consensus 50 ~i~~TG~g~~~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~~------------------~~~~~~~i~~iG~g~si 109 (277)
T PRK13317 50 KICLTGGKAGYLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEEG------------------HDLNDYIFTNIGTGTSI 109 (277)
T ss_pred EEEEECcchhhhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhcC------------------CCCCcEEEEEecCceEE
Confidence 6999999999999876 478999999999999999999997432 46799999999999999
Q ss_pred EEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCcC
Q 025826 182 IKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSK 246 (247)
Q Consensus 182 ~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~k 246 (247)
++|++ ++++|++||++||||||||++|||++.||+|+++||++||++++||+|+|||+. +|..
T Consensus 110 ~~~~g-~~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~-~~~~ 172 (277)
T PRK13317 110 HYVDG-NSQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKG-PLPP 172 (277)
T ss_pred EEEeC-CceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCC-CCCC
Confidence 99988 589999999999999999999999999999999999999999999999999995 6653
No 9
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.99 E-value=4.6e-09 Score=100.91 Aligned_cols=165 Identities=21% Similarity=0.229 Sum_probs=110.9
Q ss_pred CCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHH-HHHHhhcccccCccccCCCCC
Q 025826 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCL-EFIRSKNLHLAGFRHHDASAS 98 (247)
Q Consensus 20 ~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i-~fi~~~~~~~~~~~~~~~~~~ 98 (247)
....+|||||+|++|+|+.+ ... ..........++.+.+++++ +|+++.++...
T Consensus 143 ~g~~lGIDiGSTttK~Vl~d-d~~--------------Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl~~~---------- 197 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVME-DNE--------------VIGTGWVPTTKVIESAEEAVERALEEAGVSLE---------- 197 (404)
T ss_pred CCEEEEEEcChhheeeEEEc-CCe--------------EEEEEEeecccHHHHHHHHHHHHHHHcCCCcc----------
Confidence 34689999999999999965 110 00000001123334455565 45655544322
Q ss_pred CceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCc
Q 025826 99 DKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSG 178 (247)
Q Consensus 99 ~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSG 178 (247)
+...+.+||.|.....+.| +.+. .++|+.|..+|+.||....| ....+++||.=
T Consensus 198 di~~i~~TGyGR~~i~~~~----~ad~-iv~EItaha~GA~~L~p~~~---------------------~v~TIIDIGGQ 251 (404)
T TIGR03286 198 DVEAIGTTGYGRFTIGEHF----GADL-IQEELTVNSKGAVYLADKQE---------------------GPATVIDIGGM 251 (404)
T ss_pred ceeEEEeeeecHHHHhhhc----CCCc-eEEEEhhHHHHHHHhcccCC---------------------CCcEEEEeCCC
Confidence 1356899999998765433 2222 27999999999999964222 23588888873
Q ss_pred e-EEEEEeCCCceE--Eeecccc--CchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeee
Q 025826 179 V-SMIKVDGDGKFE--RISGTSV--GGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDI 238 (247)
Q Consensus 179 v-Si~kv~~~~~~~--RVgGssi--GGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DI 238 (247)
= -+++++ ++... +.++..- +|++|..++++| .-+++|+-++|.+++.+++||...++
T Consensus 252 DsK~I~l~-~G~v~dF~MNdkCAAGTGrFLE~~A~~L--gi~ieEl~~lA~~~~~~pv~IsS~Ct 313 (404)
T TIGR03286 252 DNKAISVW-DGIPDNFTMGGICAGASGRFLEMTAKRL--GVDITELGKLALKGMPEKVRMNSYCI 313 (404)
T ss_pred ceEEEEEc-CCceeeEEEcCcccccCcHHHHHHHHHh--CCCHHHHHHHHHhCCCCCCCccCccc
Confidence 2 255553 34444 8888877 888999999999 56899999999999999999987764
No 10
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.46 E-value=0.0056 Score=54.57 Aligned_cols=147 Identities=24% Similarity=0.330 Sum_probs=87.9
Q ss_pred eEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeecc-CHHHHHHHHHhhcccccCccccCCCCCCce
Q 025826 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS-KIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~-~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~ 101 (247)
-+|||+|.|.+|.|-|. .. ..+.....++. ..+.+.+-+++.. ...+.. ..+..
T Consensus 2 ~lGIDiGtts~K~vl~d-~g------------------~il~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-----~~~i~ 56 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG------------------KVIGYKWLDTTPVIEETARAILEAL-KEAGIG-----LEPID 56 (248)
T ss_pred EEEEEcChhheEEEEEc-CC------------------EEEEEEEecCCCCHHHHHHHHHHHH-HHcCCC-----hhhee
Confidence 47999999999999986 21 12233333333 2333333333321 111100 01135
Q ss_pred EEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCC-ceE
Q 025826 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS-GVS 180 (247)
Q Consensus 102 ~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGS-GvS 180 (247)
.|.+||-+..... + .+ ..++|+.|..+|+.+|.... . .+++||. .+.
T Consensus 57 ~i~~Tg~~~~~v~--~---~~---~~~~ei~~~~~g~~~~~~~~-------------------~-----~vidiGgqd~k 104 (248)
T TIGR00241 57 KIVATGYGRHKVG--F---AD---KIVTEISCHGKGANYLAPEA-------------------R-----GVIDIGGQDSK 104 (248)
T ss_pred EEEEECCCccccc--c---cC---CceEEhhHHHHHHHHHCCCC-------------------C-----EEEEecCCeeE
Confidence 5899998765443 1 11 35899999999999995311 1 4888865 566
Q ss_pred EEEEeCCCceE---EeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCC
Q 025826 181 MIKVDGDGKFE---RISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNN 228 (247)
Q Consensus 181 i~kv~~~~~~~---RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~ 228 (247)
++.+++ ++.. .-.-++.|+|.|+--..-..| -+++|+-++|.++.+
T Consensus 105 ~i~~~~-g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-~~~~e~~~~~~~~~~ 153 (248)
T TIGR00241 105 VIKIDD-GKVDDFTMNDKCAAGTGRFLEVTARRLG-VSVEELGSLAEKADR 153 (248)
T ss_pred EEEECC-CcEeeeeecCcccccccHHHHHHHHHcC-CCHHHHHHHHhcCCC
Confidence 777763 5443 334467777766554444446 589999999988764
No 11
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.77 E-value=0.067 Score=50.01 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=89.3
Q ss_pred CCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeE-EEEEeecc-CH-HHHHHHHHhhcccccCccccCCCC
Q 025826 21 ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRL-HFAKFETS-KI-IDCLEFIRSKNLHLAGFRHHDASA 97 (247)
Q Consensus 21 ~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l-~F~~F~t~-~i-~~~i~fi~~~~~~~~~~~~~~~~~ 97 (247)
+..+|||||.|.+|+|-++. +++ .+...+|. +. +...+.+++. +...+.. .
T Consensus 32 m~~~GIDiGStt~K~Vlld~--------------------~~i~~~~~~~tg~~~~~~a~~~l~~~-l~~~g~~-----~ 85 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD--------------------GELYGYNSMRTGNNSPDSAKNALQGI-MDKIGMK-----L 85 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC--------------------CEEEEEEeecCCCCHHHHHHHHHHHH-HHHcCCc-----c
Confidence 56799999999999999761 123 34444444 22 2233333221 1111110 0
Q ss_pred CCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCC
Q 025826 98 SDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS 177 (247)
Q Consensus 98 ~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGS 177 (247)
.+...+.+||=|...... .-..+.|+.|..+|..|+.. | ++ --++.||-
T Consensus 86 ~~v~~~~~TGyGr~~~~~--------a~~~v~EItaha~Ga~~~~p--p-~v--------------------~tIIDIGG 134 (293)
T TIGR03192 86 EDINYVVGTGYGRVNVPF--------AHKAITEIACHARGANYMGG--N-AV--------------------RTILDMGG 134 (293)
T ss_pred cceEEEEEECcchhhcch--------hhcceeeHHHHHHHHHHhcC--C-CC--------------------CEEEEeCC
Confidence 012457899988643321 11248999999999999841 1 11 14555554
Q ss_pred -ceEEEEEeCC---CceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCc
Q 025826 178 -GVSMIKVDGD---GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVID 232 (247)
Q Consensus 178 -GvSi~kv~~~---~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vD 232 (247)
-.-+++++.. .+|..=.-++=|-|.|+--..-..|. +.+|+-++|.+.+.+.+.
T Consensus 135 QDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi-~leel~~~a~~~~~~p~~ 192 (293)
T TIGR03192 135 QDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQI-PIADLGPRSFDVETEPEA 192 (293)
T ss_pred CceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCC
Confidence 2335555422 24666666778888888877777774 788988888555433333
No 12
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.76 E-value=0.01 Score=60.05 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=72.1
Q ss_pred CCCCCCCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCH---HHHH-HHHHhhc---cc
Q 025826 14 GDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKI---IDCL-EFIRSKN---LH 86 (247)
Q Consensus 14 ~~~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i---~~~i-~fi~~~~---~~ 86 (247)
..|++++ +.+++|||||-+|+..+... +.-+...+|+|... .+.+ +|+++.+ +.
T Consensus 12 ~~~~~~~-~~L~iDIGGT~ir~al~~~~------------------g~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~ 72 (638)
T PRK14101 12 ASQHADG-PRLLADVGGTNARFALETGP------------------GEITQIRVYPGADYPTLTDAIRKYLKDVKIGRVN 72 (638)
T ss_pred hccCCCC-CEEEEEcCchhheeeeecCC------------------CcccceeEEecCCCCCHHHHHHHHHHhcCCCCcc
Confidence 4675554 59999999999999987421 11144466777544 4433 3443321 10
Q ss_pred ccCccccCCCCCCceEEEEecCCcccchHHHHHHhCCc-cceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCC
Q 025826 87 LAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQN 165 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~-~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~ 165 (247)
..++... ...+...+..|-=.-..-.+.+++.+|++ +.-.+.+.|..-|...|- ++|.+++-.... .
T Consensus 73 ~igig~p--GpVd~~~~~~~nl~w~~~~~~l~~~~g~~~v~l~ND~~aaA~ge~~l~---~~e~~~~G~g~~-------~ 140 (638)
T PRK14101 73 HAAIAIA--NPVDGDQVRMTNHDWSFSIEATRRALGFDTLLVVNDFTALAMALPGLT---DAQRVQVGGGTR-------R 140 (638)
T ss_pred eEEEEEe--cCccCCeeeecCCCcEecHHHHHHHcCCCeEEEEchHHHHHcCCccCC---HHHeEEeCCCCC-------C
Confidence 0000000 00111223333111111125677888985 678999999998865442 223333322221 2
Q ss_pred CCccEEEEecCCceE
Q 025826 166 DLYPYLLVNIGSGVS 180 (247)
Q Consensus 166 ~~~PyLlVNIGSGvS 180 (247)
+-.+++++..|+|+-
T Consensus 141 ~~~~~~~lGtGTGlG 155 (638)
T PRK14101 141 QNSVIGLLGPGTGLG 155 (638)
T ss_pred CCCcEEEEECCccce
Confidence 336788888887766
No 13
>PRK12408 glucokinase; Provisional
Probab=96.42 E-value=0.0098 Score=55.62 Aligned_cols=134 Identities=15% Similarity=0.243 Sum_probs=69.0
Q ss_pred eEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCH---HHHH-HHHHhhc-ccccCccccCCCC
Q 025826 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKI---IDCL-EFIRSKN-LHLAGFRHHDASA 97 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i---~~~i-~fi~~~~-~~~~~~~~~~~~~ 97 (247)
.+++|||||-+|+..+....... .....+...+++|..+ ++.+ +|+++.. +...++... .+.
T Consensus 18 ~L~~DIGGT~i~~al~d~~g~~~------------~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~igIg~p-G~~ 84 (336)
T PRK12408 18 FVAADVGGTHVRVALVCASPDAA------------KPVELLDYRTYRCADYPSLAAILADFLAECAPVRRGVIASA-GYA 84 (336)
T ss_pred EEEEEcChhhhheeEEeccCCcc------------ccccccceeEecCCCccCHHHHHHHHHhcCCCcCEEEEEec-CCc
Confidence 59999999999999986321100 0001245566666544 4433 3444310 100000000 010
Q ss_pred CCceEEEEecCCcccchHHHHHHhCCc-cceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCC-ccEEEEec
Q 025826 98 SDKTLIKATGGGAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDL-YPYLLVNI 175 (247)
Q Consensus 98 ~~~~~i~~TGGga~k~~~~~~~~lg~~-~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~-~PyLlVNI 175 (247)
.++..|..|-=.-..+.+.+++.++++ +.-.+.+.|...|..++-.. .+..-... .... .+.++|.+
T Consensus 85 ~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~gE~~~~~~----~~~~~~g~-------~~~~~~~~~~i~~ 153 (336)
T PRK12408 85 LDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAPYMEGN----QVLQLSGP-------AQAAAGPALVLGP 153 (336)
T ss_pred eECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcccccCCHh----HeeeecCC-------CCCCCCcEEEEEC
Confidence 112223333111123678888899995 99999999999887665210 00000000 0122 46899999
Q ss_pred CCceE
Q 025826 176 GSGVS 180 (247)
Q Consensus 176 GSGvS 180 (247)
|||+-
T Consensus 154 GTGiG 158 (336)
T PRK12408 154 GTGLG 158 (336)
T ss_pred CCcce
Confidence 99765
No 14
>PRK00292 glk glucokinase; Provisional
Probab=96.37 E-value=0.029 Score=51.43 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=68.2
Q ss_pred eEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCe-EEEEEeeccC---HHHHH-HHHHh-hcccccCccccCCC
Q 025826 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGR-LHFAKFETSK---IIDCL-EFIRS-KNLHLAGFRHHDAS 96 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~-l~F~~F~t~~---i~~~i-~fi~~-~~~~~~~~~~~~~~ 96 (247)
.+|+|||||-+|++.+... .++ +...++++.. +.+.+ +++++ ......++.-..-.
T Consensus 4 ~lgiDIGgT~i~~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gigIg~pG 65 (316)
T PRK00292 4 ALVGDIGGTNARFALCDWA------------------NGEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACFAIAG 65 (316)
T ss_pred EEEEEcCccceEEEEEecC------------------CCceeeeEEEecCCCCCHHHHHHHHHHhccCCCCceEEEEEeC
Confidence 6999999999999997621 122 5556666643 44544 45543 11111000000000
Q ss_pred CCCceEEEEecCCcccchHHHHHHhCCc-cceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEec
Q 025826 97 ASDKTLIKATGGGAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI 175 (247)
Q Consensus 97 ~~~~~~i~~TGGga~k~~~~~~~~lg~~-~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNI 175 (247)
..+...+..+--.-....+.+++.++++ +.-.+...|...|-.++.+ .+.-++-... .....++++|++
T Consensus 66 ~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~---~~~~~~g~~~-------~~~~~~~~~v~~ 135 (316)
T PRK00292 66 PVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGE---EDLVQIGGGE-------PVPGAPIAVIGP 135 (316)
T ss_pred cccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCH---hheeEeCCCC-------CCCCCcEEEEEc
Confidence 0011113222111111247788889995 9999999998888665421 0000011110 012357899999
Q ss_pred CCceEE
Q 025826 176 GSGVSM 181 (247)
Q Consensus 176 GSGvSi 181 (247)
|||+-.
T Consensus 136 GTGiG~ 141 (316)
T PRK00292 136 GTGLGV 141 (316)
T ss_pred CCcceE
Confidence 998753
No 15
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.31 E-value=0.051 Score=48.60 Aligned_cols=70 Identities=24% Similarity=0.197 Sum_probs=46.3
Q ss_pred eEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceE
Q 025826 101 TLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVS 180 (247)
Q Consensus 101 ~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvS 180 (247)
..+.++|-+.......+.+++-. +|+.+...+...|... .. .|-+++-.|||..
T Consensus 65 ~~~g~aG~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~--------------------~~-~~giv~I~GTGS~ 118 (271)
T PF01869_consen 65 ICIGAAGYGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGA--------------------TA-EDGIVVIAGTGSI 118 (271)
T ss_dssp EEEEEEEEEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHH--------------------ST-SSEEEEEESSSEE
T ss_pred eeeeEeeecCcccccchhhcceE-----EEEEEEHHHHHHhCCC--------------------CC-CcEEEEEcCCCce
Confidence 44677776665444333322211 1666666665555431 23 5789999999999
Q ss_pred EEEEeCCCceEEeecc
Q 025826 181 MIKVDGDGKFERISGT 196 (247)
Q Consensus 181 i~kv~~~~~~~RVgGs 196 (247)
++..+.+++..|+||-
T Consensus 119 ~~~~~~~g~~~r~gG~ 134 (271)
T PF01869_consen 119 AYGRDRDGRVIRFGGW 134 (271)
T ss_dssp EEEEETTSEEEEEEES
T ss_pred EEEEEcCCcEEEeCCC
Confidence 9999978999999985
No 16
>PRK13318 pantothenate kinase; Reviewed
Probab=95.95 E-value=0.22 Score=44.74 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=23.1
Q ss_pred cEEEEecCCceEEEEEeCCCceEEeecccc
Q 025826 169 PYLLVNIGSGVSMIKVDGDGKFERISGTSV 198 (247)
Q Consensus 169 PyLlVNIGSGvSi~kv~~~~~~~RVgGssi 198 (247)
|+++|.+||++.+=.|+.++ ++.||..+
T Consensus 125 ~~ivid~GTA~t~d~v~~~g--~~~GG~I~ 152 (258)
T PRK13318 125 PLIVVDFGTATTFDVVSAKG--EYLGGVIA 152 (258)
T ss_pred CEEEEEcCCceEEEEEcCCC--cEEEEEEC
Confidence 89999999999999998866 45577543
No 17
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.55 E-value=0.55 Score=43.30 Aligned_cols=146 Identities=24% Similarity=0.254 Sum_probs=84.8
Q ss_pred eEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeec--cC----HHHHHHHHHh-hcccccCccccCC
Q 025826 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET--SK----IIDCLEFIRS-KNLHLAGFRHHDA 95 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t--~~----i~~~i~fi~~-~~~~~~~~~~~~~ 95 (247)
.+|||||.|.+|.|-+...+. ..-.+.+...++ .+ .+++++.+.+ .++...
T Consensus 3 ~~GIDiGStttK~Vlid~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------- 60 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGD---------------KEECLAKRNDRIRQRDPFKLAEDAYDDLLEEAGLAAA------- 60 (262)
T ss_pred EEEEEcCcccEEEEEEecCCC---------------eeEEEEEEEecCCCCCHHHHHHHHHHHHHHHcCCChh-------
Confidence 589999999999999772110 001122332333 23 3445544322 232211
Q ss_pred CCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEec
Q 025826 96 SASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI 175 (247)
Q Consensus 96 ~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNI 175 (247)
+...+.+||=|... . +. .+ .+.|+.|..+|+.||. |+.- -++.|
T Consensus 61 ---~i~~i~~TGYGR~~-~--~a--~~----~vtEIt~ha~GA~~~~---p~~~---------------------tIiDI 104 (262)
T TIGR02261 61 ---DVAYCATTGEGESL-A--FH--TG----HFYSMTTHARGAIYLN---PEAR---------------------AVLDI 104 (262)
T ss_pred ---heEEEEEECCchhh-h--hh--cC----CeeEEeHHHHHHHHHC---CCCC---------------------EEEEe
Confidence 13568999988753 1 11 11 3679999999999984 2211 33444
Q ss_pred CC-ceEEEEEeCC---CceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCC
Q 025826 176 GS-GVSMIKVDGD---GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGN 227 (247)
Q Consensus 176 GS-GvSi~kv~~~---~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd 227 (247)
|- =.-+++++.. .+|..=.=++=|-|.|+--..-..+. +.+|+-++|.+.+
T Consensus 105 GGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i-~leel~~~a~~~~ 159 (262)
T TIGR02261 105 GALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARYLGI-AQDEIGSLSQQAD 159 (262)
T ss_pred CCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHHhCC-CHHHHHHHHhcCC
Confidence 43 1223344321 23555555678889998888777775 7899999887764
No 18
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.49 E-value=0.9 Score=41.23 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=38.5
Q ss_pred cchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 025826 112 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 186 (247)
Q Consensus 112 k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~ 186 (247)
.+.+.|++.+++++.-.+...|...|-.++-. . .....+++|.+|+|+..=.|.+
T Consensus 88 ~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~-~-------------------~~~~~~~~v~igtGiG~giv~~ 142 (318)
T TIGR00744 88 PLKEKVEARVGLPVVVENDANAAALGEYKKGA-G-------------------KGARDVICITLGTGLGGGIIIN 142 (318)
T ss_pred CHHHHHHHHHCCCEEEechHHHHHHHHHHhcc-c-------------------CCCCcEEEEEeCCccEEEEEEC
Confidence 36678889999999999999998877654421 0 1123478888888876655544
No 19
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.99 E-value=1.1 Score=40.66 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=40.9
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 186 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~ 186 (247)
..+.+.|++.+++++.-.++..|..-|=.++-.. ...-.++++.+|+|+--=-|-+
T Consensus 96 ~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--------------------~~~~~~~~i~~gtGIG~giv~~ 151 (314)
T COG1940 96 VDLAEELEARLGLPVFVENDANAAALAEAWFGAG--------------------RGIDDVVYITLGTGIGGGIIVN 151 (314)
T ss_pred ccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--------------------CCCCCEEEEEEccceeEEEEEC
Confidence 3479999999999999999999998886665321 1122478888888877555544
No 20
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=94.24 E-value=0.3 Score=45.89 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=78.0
Q ss_pred EEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcc--cccCccccCCCCCCce
Q 025826 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNL--HLAGFRHHDASASDKT 101 (247)
Q Consensus 24 ~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~--~~~~~~~~~~~~~~~~ 101 (247)
++-|||||-+-+..+.+... .---++..+|++++.+.+.+.+++-.. .... +.+...
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~---------------~~~~~~~~~~~~~~~~s~~~~l~~~l~~~~~~~------~~p~~~ 59 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGG---------------PLQLIDIRRYPSADFPSFEDALADYLAELDAGG------PEPDSA 59 (316)
T ss_dssp EEEEEETTEEEEEEEECTCG---------------G-EEEEEEEEEGCCCCHHHHHHHHHHHHTCHHH------TCEEEE
T ss_pred CeEEeCcccEEEEEEEcCCC---------------CccccccEEEecCCcCCHHHHHHHHHHhcccCC------CccceE
Confidence 46799999999999884421 001257788999887776654443211 0000 001113
Q ss_pred EEEEec---CCc--------ccchHHHHHHhCC-ccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCcc
Q 025826 102 LIKATG---GGA--------YKFADLIKEKLGV-VLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYP 169 (247)
Q Consensus 102 ~i~~TG---Gga--------~k~~~~~~~~lg~-~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~P 169 (247)
+|.+-| ++. .--.+.+++.+++ ++.-++.|+++..|+..|-.+ ...+.. +-.+.+--|
T Consensus 60 ~iavAGPV~~~~~~lTN~~W~i~~~~l~~~lg~~~v~liNDfeA~a~gl~~L~~~---~l~~l~-------~g~~~~~~~ 129 (316)
T PF02685_consen 60 CIAVAGPVRDGKVRLTNLPWTIDADELAQRLGIPRVRLINDFEAQAYGLPALDPE---DLVTLQ-------PGEPDPGGP 129 (316)
T ss_dssp EEEESS-EETTCEE-SSSCCEEEHHHCHCCCT-TCEEEEEHHHHHHHHHHHHHHC---CECCHC-------CEESSTTS-
T ss_pred EEEEecCccCCEEEecCCCccccHHHHHHHhCCceEEEEcccchheeccCCCCHH---Heeecc-------CCCCCCCCc
Confidence 333333 222 2335667778887 578899999999999987541 111100 111246789
Q ss_pred EEEEecCCc--eEEEEEeC
Q 025826 170 YLLVNIGSG--VSMIKVDG 186 (247)
Q Consensus 170 yLlVNIGSG--vSi~kv~~ 186 (247)
.+++..||| ++.+.-++
T Consensus 130 ~~Vig~GTGLG~a~l~~~~ 148 (316)
T PF02685_consen 130 RAVIGPGTGLGVALLVPDG 148 (316)
T ss_dssp EEEEEESSSEEEEEEEEET
T ss_pred EEEEEcCCCcEEEEEEecC
Confidence 999999995 67766655
No 21
>PRK13321 pantothenate kinase; Reviewed
Probab=94.13 E-value=2.1 Score=38.52 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=23.9
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccC
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVG 199 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiG 199 (247)
.|+++|.+||.+.+=.|++++ +++||..+=
T Consensus 124 ~~~lvid~GTA~T~d~v~~~g--~~~GG~I~P 153 (256)
T PRK13321 124 RNLIVVDFGTATTFDCVSGKG--EYLGGAICP 153 (256)
T ss_pred CCEEEEECCCceEEEEEcCCC--cEEEEEECc
Confidence 389999999999999998865 456776443
No 22
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=93.10 E-value=0.54 Score=35.20 Aligned_cols=18 Identities=33% Similarity=0.218 Sum_probs=16.1
Q ss_pred eEEEEcCcceeEEEEEee
Q 025826 23 HLALDIGGSLIKVVYFLR 40 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~ 40 (247)
.+|||+|||-+|++.+.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 589999999999999763
No 23
>PTZ00288 glucokinase 1; Provisional
Probab=93.00 E-value=0.96 Score=44.05 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCCCCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEee-cc-CHHHHHHHHHhhcccccCcccc
Q 025826 16 ESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFE-TS-KIIDCLEFIRSKNLHLAGFRHH 93 (247)
Q Consensus 16 ~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~-t~-~i~~~i~fi~~~~~~~~~~~~~ 93 (247)
|.+...--+|+|||||-+.+.+|...+.. ...-...-++|+ |. ++.+.++++.+...........
T Consensus 21 ~~~~~~~~~~~DiGgt~~R~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (405)
T PTZ00288 21 SWSSGPIFVGCDVGGTNARVGFAREVQHD-------------DSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLSF 87 (405)
T ss_pred ccccCCeEEEEEecCCceEEEEEeccCCC-------------CCceeEEEEecccccccHHHHHHHHHHHHHHHHhcCcc
Confidence 33344456899999999999999853220 011234456667 33 5666666554321111100000
Q ss_pred CCCCCCceEEEEe----cCCc----------ccchHHHHHHhCC-ccceehhhhhhhhhHHHHH
Q 025826 94 DASASDKTLIKAT----GGGA----------YKFADLIKEKLGV-VLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 94 ~~~~~~~~~i~~T----GGga----------~k~~~~~~~~lg~-~~~k~dEm~cli~G~~fLl 142 (247)
-.......|.+- ||.. ++..++=-..+++ ++.-++.++|...|+..|-
T Consensus 88 -~~~~~~a~iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~~~~~liNDfeA~aygi~~l~ 150 (405)
T PTZ00288 88 -IQRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPPGRSALLNDLEAGAYGVLAVS 150 (405)
T ss_pred -ccCcCeEEEEEeCceeCCEeeccccccccccccCCCCchhcCCCeEEEEEhHHHHhCcccccC
Confidence 001112334433 3333 0333332233776 6888999999999998753
No 24
>PRK09557 fructokinase; Reviewed
Probab=92.77 E-value=3.8 Score=37.14 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=36.1
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEE
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKV 184 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv 184 (247)
..+.+.|++.+++++.-.+...|...|-.+.-. . .....++.+++|+|+-.=-|
T Consensus 86 ~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~-~-------------------~~~~~~~~l~igtGiG~giv 139 (301)
T PRK09557 86 QPLDKDLSARLNREVRLANDANCLAVSEAVDGA-A-------------------AGKQTVFAVIIGTGCGAGVA 139 (301)
T ss_pred CCHHHHHHHHHCCCEEEccchhHHHHHHHHhcc-c-------------------CCCCcEEEEEEccceEEEEE
Confidence 445677888899999999999998877654311 0 11234677888887764433
No 25
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.38 E-value=0.61 Score=42.99 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.4
Q ss_pred eEEEEecCCccc--chHHHHHHhCCccceehhhhhhh
Q 025826 101 TLIKATGGGAYK--FADLIKEKLGVVLDKEDEMDCLV 135 (247)
Q Consensus 101 ~~i~~TGGga~k--~~~~~~~~lg~~~~k~dEm~cli 135 (247)
..|.+|||||.. +.+.|.+.+++++...+=+.++.
T Consensus 284 ~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~ 320 (348)
T TIGR01175 284 DGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMA 320 (348)
T ss_pred ceEEEECccccchhHHHHHHHHHCCCeEecChHHhcc
Confidence 569999999965 89999999999988888766544
No 26
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=92.32 E-value=1.4 Score=40.52 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=35.1
Q ss_pred HHHHHHhCC-ccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEE
Q 025826 115 DLIKEKLGV-VLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSM 181 (247)
Q Consensus 115 ~~~~~~lg~-~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi 181 (247)
..+++.+++ ++.-.+.++|...|...|. ++..+++-... ..+-.+++++..|+|..+
T Consensus 83 ~~l~~~~g~~~V~l~ND~naaa~ge~~l~---~~~~~~~g~~~-------~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 83 AELKQNLGFSHLEIINDFTAVSYAIPGLK---KEDLIQFGGAE-------PVEGKPIAILGAGTGLGV 140 (316)
T ss_pred HHHHHhcCCCeEEEEecHHHHHcCCCCCC---HHHeEEeCCCC-------CCCCCcEEEEecCCCcee
Confidence 467778898 5999999999988853331 11112221111 123367899988887775
No 27
>PRK13320 pantothenate kinase; Reviewed
Probab=91.78 E-value=4.4 Score=36.58 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=25.3
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 200 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGG 200 (247)
-.|+++|.+||.+.+=.|+.++ ++.||..+=|
T Consensus 113 ~~~~lVID~GTA~Tid~v~~~g--~~~GG~I~PG 144 (244)
T PRK13320 113 GKNVLAIDAGTAITYDVLDSEG--VYLGGLISPG 144 (244)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--cEEEEEEchh
Confidence 3689999999999999998866 4567765443
No 28
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=91.41 E-value=4.9 Score=39.23 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeecc-CHHHHHHHHHh----hcccccCcccc
Q 025826 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS-KIIDCLEFIRS----KNLHLAGFRHH 93 (247)
Q Consensus 19 ~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~-~i~~~i~fi~~----~~~~~~~~~~~ 93 (247)
..+..+|||.|.|.||+|-.+.. ..+-...+.++ -.+.+.+-+++ .+...
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~-------------------~~I~~~~~~~t~g~p~~~~~l~~~le~l~~~~------ 187 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDG-------------------KEILYGFYVSTKGRPIAEKALKEALEELGEKL------ 187 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCC-------------------CeEEEEEEEcCCCChhHHHHHHHHHHHcccCh------
Confidence 46788999999999999996622 12222222222 23333333322 22211
Q ss_pred CCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEE
Q 025826 94 DASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLV 173 (247)
Q Consensus 94 ~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlV 173 (247)
.....+.+||=|-+.....| +.. ..+.|+.|..+|..||..... -++
T Consensus 188 ----~~I~~~~~TGYGR~~v~~~~----~aD-~~~~Ei~ah~kgA~~f~p~~d------------------------tIi 234 (396)
T COG1924 188 ----EEILGLGVTGYGRNLVGAAL----GAD-KVVVEISAHAKGARYFAPDVD------------------------TVI 234 (396)
T ss_pred ----heeeeeeeecccHHHhhhhh----cCC-cceeeeehhHHHHHHhCCCCc------------------------EEE
Confidence 12356899998766544322 222 237899999999999963221 233
Q ss_pred ecCC-ceEEEEEeC--CCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCce
Q 025826 174 NIGS-GVSMIKVDG--DGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDM 233 (247)
Q Consensus 174 NIGS-GvSi~kv~~--~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDm 233 (247)
-||- =+=++++++ +..|..=+=++-|-|-|+=-..--.| -+.+|+-++|.++++. |+|
T Consensus 235 DIGGQD~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lg-v~v~E~~~~A~~~~~~-v~i 295 (396)
T COG1924 235 DIGGQDSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLG-VDVEELGKLALKATPP-VKI 295 (396)
T ss_pred EecCcceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhC-CCHHHHHHHHhcCCCC-ccc
Confidence 3432 122333332 34566666677777777765554445 6899999999999986 554
No 29
>PRK09698 D-allose kinase; Provisional
Probab=91.23 E-value=8.4 Score=34.77 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhh
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTG 137 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G 137 (247)
+...+.|++.+++++.-.+...|...|
T Consensus 94 ~~l~~~l~~~~~~pv~v~NDa~aaa~~ 120 (302)
T PRK09698 94 YDLADKLENTLNCPVFFSRDVNLQLLW 120 (302)
T ss_pred CCHHHHHHHHhCCCEEEcchHhHHHHH
Confidence 345677888899999999999986644
No 30
>PRK13326 pantothenate kinase; Reviewed
Probab=89.20 E-value=17 Score=33.38 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=25.3
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 200 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGG 200 (247)
.|+++|..||.+.+=.|+.+++| +||..+=|
T Consensus 126 ~~~iVID~GTA~T~D~V~~~g~~--lGG~I~PG 156 (262)
T PRK13326 126 NDALVVDLGTACTIFAVSRQDGI--LGGLINGG 156 (262)
T ss_pred CCEEEEECCCceEEEEEcCCCcE--EEEEECcc
Confidence 47999999999999999887755 78865444
No 31
>PRK13331 pantothenate kinase; Reviewed
Probab=89.01 E-value=8.7 Score=35.17 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=23.7
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeecccc
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSV 198 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssi 198 (247)
..|+++|.+||.+.+=.|+.+++ ++||..+
T Consensus 112 ~~~~iVID~GTA~T~D~V~~~g~--~~GG~I~ 141 (251)
T PRK13331 112 GFPCLVIDAGTALTFTGVDSDRT--LVGGAIL 141 (251)
T ss_pred CCCEEEEECCCceEEEEEcCCCc--EEEEEEC
Confidence 35899999999999999988664 4666543
No 32
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.97 E-value=3.4 Score=41.24 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCeEEEEcCcceeEEEEEeecCCCCCCccCC-CC---CC-CCCCCCeEEEEEeecc-CHH--HHHHHHHhhcccccCcc
Q 025826 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDS-GK---KS-DPVLEGRLHFAKFETS-KII--DCLEFIRSKNLHLAGFR 91 (247)
Q Consensus 20 ~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~-~~---~~-~~~~~g~l~F~~F~t~-~i~--~~i~fi~~~~~~~~~~~ 91 (247)
.+-.+|||||.|.|++|+ ++-.-+......+ .+ .+ .-.-...+||.-+.+. .|| ..-+|+++ .....++.
T Consensus 5 ~i~SVGIDIGTsTTqlvf-Srl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~-ey~~Agi~ 82 (475)
T PRK10719 5 ELLSVGIDIGTTTTQVIF-SRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEE-EYQKAGIA 82 (475)
T ss_pred EEEEEEEeccCceEEEEE-EEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHH-HHHHcCCC
Confidence 456799999999999999 5432111000000 00 00 0013455777766443 333 33345533 22223222
Q ss_pred ccCCCCCCceEEEEecCCcccc-hHHHHHHhCCcc---c---eehhhhhhh----hhHHHHHhhcCCcceEeeCCCeeee
Q 025826 92 HHDASASDKTLIKATGGGAYKF-ADLIKEKLGVVL---D---KEDEMDCLV----TGANFLLKAVHQEAFTYVDGQKEFV 160 (247)
Q Consensus 92 ~~~~~~~~~~~i~~TGGga~k~-~~~~~~~lg~~~---~---k~dEm~cli----~G~~fLl~~i~~e~f~~~~~~~~~~ 160 (247)
. .........+||--+.+- ....-+.++..+ + --.+++.++ .|..-|.+
T Consensus 83 ~---~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLse----------------- 142 (475)
T PRK10719 83 P---ESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSE----------------- 142 (475)
T ss_pred H---HHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhh-----------------
Confidence 1 112346678888776321 111112222111 1 112333333 33333311
Q ss_pred ecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCch
Q 025826 161 QIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGG 201 (247)
Q Consensus 161 ~~~~~~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGG 201 (247)
+.-..-++|.||.|++=+.|-.+++....+--.+||-
T Consensus 143 ----Eke~gVa~IDIGgGTT~iaVf~~G~l~~T~~l~vGG~ 179 (475)
T PRK10719 143 ----ERNTRVLNIDIGGGTANYALFDAGKVIDTACLNVGGR 179 (475)
T ss_pred ----hccCceEEEEeCCCceEEEEEECCEEEEEEEEecccc
Confidence 1123469999999999888777777777777777774
No 33
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=88.52 E-value=1.8 Score=40.19 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=27.3
Q ss_pred ceEEEEecCCc--ccchHHHHHHhCCccceehhhhhh
Q 025826 100 KTLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCL 134 (247)
Q Consensus 100 ~~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cl 134 (247)
-..|.+||||| .-..+.|.+.+++++...+.+.-+
T Consensus 275 i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~ 311 (340)
T PF11104_consen 275 IERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNI 311 (340)
T ss_dssp -SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGS
T ss_pred CCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhC
Confidence 36799999999 456899999999999998887654
No 34
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=88.07 E-value=17 Score=32.86 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=37.7
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 186 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~ 186 (247)
..+.+.|++.+++++.-.+...|...|=.+.-. . .....++.+++|+|+..=-|-+
T Consensus 86 ~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~-~-------------------~~~~~~~~l~~gtGiG~giv~~ 141 (303)
T PRK13310 86 KPLRADLSARLGRDVRLDNDANCFALSEAWDDE-F-------------------TQYPLVMGLILGTGVGGGLVFN 141 (303)
T ss_pred CcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcc-c-------------------cCCCcEEEEEecCceEEEEEEC
Confidence 456778888999999999999887766433211 0 1123478888999887544443
No 35
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=87.64 E-value=7.4 Score=35.06 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=23.9
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccC
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVG 199 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiG 199 (247)
.|.++|.+||.+.+=.|+.++ +++||..+=
T Consensus 116 ~~~lViD~GTA~Tid~v~~~g--~~~GG~I~P 145 (243)
T TIGR00671 116 FNVVVVDAGTALTIDLVDQEG--KFLGGAIAP 145 (243)
T ss_pred CCEEEEEcCCceEEEEEcCCC--eEEEEEECc
Confidence 489999999999999998755 456776443
No 36
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=87.29 E-value=21 Score=31.73 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=38.2
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 186 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~ 186 (247)
..+.+.|++.+++++.-.++..|...|=.+.-. . ....-++.+.+|+|+-.=.|-+
T Consensus 86 ~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~-~-------------------~~~~~~v~i~lgtGiG~giv~~ 141 (256)
T PRK13311 86 QPLQADLSRLIQREVRIDNDANCFALSEAWDPE-F-------------------RTYPTVLGLILGTGVGGGLIVN 141 (256)
T ss_pred CChHHHHHHHHCCCEEEEchhhHHHHHHHHhcC-C-------------------CCCCcEEEEEECcCeEEEEEEC
Confidence 566788888899999999999998866544321 0 1123478888888876554433
No 37
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=87.29 E-value=0.89 Score=39.08 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=16.4
Q ss_pred eEEEEcCcceeEEEEEee
Q 025826 23 HLALDIGGSLIKVVYFLR 40 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~ 40 (247)
+||||+|||.|-.|.+.+
T Consensus 1 RigIDvGGT~TD~v~~d~ 18 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLDE 18 (176)
T ss_pred CeeEecCCCcEEEEEEeC
Confidence 589999999999999884
No 38
>PRK13324 pantothenate kinase; Reviewed
Probab=84.87 E-value=31 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.3
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 200 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGG 200 (247)
..|.++|..||.+.+=.|+.++ +++||..+=|
T Consensus 123 ~~~~iViD~GTA~T~d~v~~~g--~~~GG~I~PG 154 (258)
T PRK13324 123 NKDLLIIDLGTATTFDLVTKDK--KYLSGSIMPG 154 (258)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--eEEEEEECcc
Confidence 3589999999999999998865 5567765544
No 39
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=84.78 E-value=20 Score=29.37 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=69.9
Q ss_pred EEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeec-cCHHHHHHHHHhh----ccccc--CccccCCCC
Q 025826 25 ALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET-SKIIDCLEFIRSK----NLHLA--GFRHHDASA 97 (247)
Q Consensus 25 giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t-~~i~~~i~fi~~~----~~~~~--~~~~~~~~~ 97 (247)
|||||+|-++++.+... +-.+.-.++++ ...+++++.+.+. ..... ++.-.....
T Consensus 1 gidig~~~i~~~l~d~~------------------g~ii~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD------------------GEIIYSESIPTPTSPEELLDALAELIERLLADYGRSGIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEETT------------------SCEEEEEEEEHHSSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSE
T ss_pred CEEECCCEEEEEEECCC------------------CCEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcccccEEEecccc
Confidence 79999999999998722 23355566776 4555555544331 11100 000000000
Q ss_pred --CCceEEEEecC---CcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEE
Q 025826 98 --SDKTLIKATGG---GAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 172 (247)
Q Consensus 98 --~~~~~i~~TGG---ga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLl 172 (247)
.....|.-+-- ....+.+.|++.+++++.-.+...|...|-.++-.. ....-+++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~--------------------~~~~~~~~ 122 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFGVPVIIENDANAAALAEYWFGAA--------------------KDCDNFLY 122 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTT--------------------TTTSSEEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccceEEEEecCCCcceeehhhcCcc--------------------CCcceEEE
Confidence 00112222211 124567889999999999999999998886554321 11234788
Q ss_pred EecCCceEEEEEeC
Q 025826 173 VNIGSGVSMIKVDG 186 (247)
Q Consensus 173 VNIGSGvSi~kv~~ 186 (247)
+.+|+|+..=-+.+
T Consensus 123 l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 123 LYIGTGIGAGIIIN 136 (179)
T ss_dssp EEESSSEEEEEEET
T ss_pred EEeecCCCcceecc
Confidence 88888875544433
No 40
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=82.41 E-value=37 Score=30.49 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=35.8
Q ss_pred ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEE
Q 025826 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKV 184 (247)
Q Consensus 111 ~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv 184 (247)
..+.+.|++.+++++.-.++..|...|=.+.- . ...-+++++++|+||--=-|
T Consensus 86 ~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~g---~------------------~~~~~~~~l~ig~GiG~giv 138 (291)
T PRK05082 86 FPLVQTLEQLTDLPTIALNDAQAAAWAEYQAL---P------------------DDIRNMVFITVSTGVGGGIV 138 (291)
T ss_pred CChHHHHHHHhCCCEEEECcHHHHHHHHHHhc---C------------------CCCCCEEEEEECCCcceEEE
Confidence 44677788889999999999999876643221 1 11234788888887754333
No 41
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=82.02 E-value=0.97 Score=42.76 Aligned_cols=45 Identities=33% Similarity=0.505 Sum_probs=35.5
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehh-hhhhhhhHHHHHhhc
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDE-MDCLVTGANFLLKAV 145 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dE-m~cli~G~~fLl~~i 145 (247)
.=|.+||||| .-+.+.|++++++++...++ .+|.++|+.-++++.
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~~ 322 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLENM 322 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-H
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhCH
Confidence 3499999999 66789999999999877766 789999999887643
No 42
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=77.67 E-value=28 Score=31.48 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=33.8
Q ss_pred EEEEecCCceEEEEEeCCCceEEeeccccCchhHHh-hhhhhcCCCCHHHHHHH
Q 025826 170 YLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWG-LGRLLTNCKSFDELLEL 222 (247)
Q Consensus 170 yLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~G-L~~LLtg~~~fdeil~l 222 (247)
-++|.||.|++=+-+-..++........+||.-|-= |++.| + -+++|+-++
T Consensus 137 ~~vvDIGggtt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l-~-i~~~eAE~l 188 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAY-G-ISFEEAEQY 188 (267)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEEecccCchHHHHHHHHHHh-C-CCHHHHHHH
Confidence 389999999885555455777788888999987743 22332 2 356665443
No 43
>PRK13322 pantothenate kinase; Reviewed
Probab=76.52 E-value=47 Score=29.96 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=23.7
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccC
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVG 199 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiG 199 (247)
.|+|+|.+||.+.+=.|+.++ +++||..+=
T Consensus 116 ~~~lViD~GTA~TiD~v~~~g--~~~GG~I~P 145 (246)
T PRK13322 116 NACLVIDCGTAVTIDLVDADG--QHLGGYICP 145 (246)
T ss_pred CCEEEEEcCCeeEEEEEcCCC--cEeeeEEcc
Confidence 478999999999999998755 456776443
No 44
>PRK09604 UGMP family protein; Validated
Probab=75.86 E-value=13 Score=34.93 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=62.7
Q ss_pred hHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEec-CCc-eEEEEEeCCCceE
Q 025826 114 ADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI-GSG-VSMIKVDGDGKFE 191 (247)
Q Consensus 114 ~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNI-GSG-vSi~kv~~~~~~~ 191 (247)
.+-+...++++++-++-++|......+.. ..-+|++++-| | | +.++.+.+.++++
T Consensus 95 Ak~La~~~~ipl~~v~h~~~ha~~a~~~s----------------------~~~~~~lvl~vsG-G~s~~~~~~~~~~~~ 151 (332)
T PRK09604 95 AKALALALNKPLIGVNHLEGHLLAPFLEE----------------------EPEFPFLALLVSG-GHTQLVLVKGIGDYE 151 (332)
T ss_pred HHHHHHHhCCCEEeecCHHHHHHhhhhcc----------------------CCCCCEEEEEecC-CccEEEEEcCCCcEE
Confidence 55556667788888888888776444321 12346654333 4 4 4446666778999
Q ss_pred Eeecc-ccCchhHHhhhhhhcCCCCHH--HHHHHHhCCCCCcCce
Q 025826 192 RISGT-SVGGGTFWGLGRLLTNCKSFD--ELLELSHQGNNRVIDM 233 (247)
Q Consensus 192 RVgGs-siGGGT~~GL~~LLtg~~~fd--eil~lA~~Gd~~~vDm 233 (247)
.++.| ...=|-++--+-...|-.... .++.||..|+...+++
T Consensus 152 ~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~ 196 (332)
T PRK09604 152 LLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKF 196 (332)
T ss_pred EccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeC
Confidence 99886 356677777777777754333 5999999998654443
No 45
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=72.58 E-value=33 Score=28.33 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeecc----CHHHHHHHHHhhcccccCccccCC
Q 025826 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS----KIIDCLEFIRSKNLHLAGFRHHDA 95 (247)
Q Consensus 20 ~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~----~i~~~i~fi~~~~~~~~~~~~~~~ 95 (247)
.+..+|||.|-.-+=++...+... .+.. +..++.+ .+++..+++++....
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~------------~a~p-----l~~i~~~~~~~~~~~l~~~i~~~~i~--------- 56 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGG------------TAQP-----LETIKRNNGTPDWDRLEKLIKEWQPD--------- 56 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCC------------EEcC-----EEEEEcCCCchHHHHHHHHHHHhCCC---------
Confidence 456899999999999998543210 0011 2223333 355666666664321
Q ss_pred CCCCceEEEEec-----CCc--------ccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826 96 SASDKTLIKATG-----GGA--------YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (247)
Q Consensus 96 ~~~~~~~i~~TG-----Gga--------~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~ 143 (247)
..+-| .|. .+|.+.+++.+++++...||=-+....-..|..
T Consensus 57 -------~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~~ 110 (138)
T PRK00109 57 -------GLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERALAD 110 (138)
T ss_pred -------EEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHHH
Confidence 22333 233 388999988889999999998888888777743
No 46
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=70.95 E-value=25 Score=32.45 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=60.6
Q ss_pred chHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceE-EEEEeCCCceE
Q 025826 113 FADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVS-MIKVDGDGKFE 191 (247)
Q Consensus 113 ~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvS-i~kv~~~~~~~ 191 (247)
+.+-+...++++++-++.++|...-..|... ...+|+|.+-+=-|.+ ++.+++..+++
T Consensus 91 ~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~---------------------~~~~~~l~l~vsGG~t~l~~~~~~~~~~ 149 (305)
T TIGR00329 91 FARSLALSLDKPLIGVNHLLGHIYAPRLDTN---------------------ILQFPFVSLLVSGGHTQIIAVKGIGDYE 149 (305)
T ss_pred HHHHHHHHhCCCEeecccHHHHHHHhhhhcC---------------------CCCCCcEEEEEcCCceEEEEEeCCCcEE
Confidence 4666677788999999999998876555321 1247787555522554 66777766999
Q ss_pred Eeeccc-cCchhHHhhhhhhcCCCCHHH--HHHHHhCCCCCcCc
Q 025826 192 RISGTS-VGGGTFWGLGRLLTNCKSFDE--LLELSHQGNNRVID 232 (247)
Q Consensus 192 RVgGss-iGGGT~~GL~~LLtg~~~fde--il~lA~~Gd~~~vD 232 (247)
+++.|. ..-|=++--+..|.|..-..| +..+|..|+...++
T Consensus 150 ~l~~t~d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~ 193 (305)
T TIGR00329 150 VLGETLDDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFY 193 (305)
T ss_pred EeeeecCchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCcccc
Confidence 999862 333334333333334322223 66788888764333
No 47
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=70.26 E-value=20 Score=33.44 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=68.8
Q ss_pred eEEEEecC-Ccc-------cchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccE--
Q 025826 101 TLIKATGG-GAY-------KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPY-- 170 (247)
Q Consensus 101 ~~i~~TGG-ga~-------k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~Py-- 170 (247)
..|.+|-| |++ -+.+-|...++++++-++-++|+.....+-.+ ...+|+
T Consensus 72 d~iav~~GPGsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~---------------------~~~~~~lv 130 (314)
T TIGR03723 72 DAIAVTAGPGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEDK---------------------PLEFPFLA 130 (314)
T ss_pred CEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHHhhhhccC---------------------CCCCCEEE
Confidence 34565544 333 45666777788899999999988754332110 123566
Q ss_pred EEEecCCceEEEEEeCCCceEEeecc-ccCchhHHhhhhhhcCCCCHH--HHHHHHhCCCCCcCc
Q 025826 171 LLVNIGSGVSMIKVDGDGKFERISGT-SVGGGTFWGLGRLLTNCKSFD--ELLELSHQGNNRVID 232 (247)
Q Consensus 171 LlVNIGSGvSi~kv~~~~~~~RVgGs-siGGGT~~GL~~LLtg~~~fd--eil~lA~~Gd~~~vD 232 (247)
|+|+-|... ++.+.+.+++++++.| ...=|-++--+..+.|-.-++ .++.||..|+....+
T Consensus 131 L~vdgg~s~-~~~~~~~~~~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~ 194 (314)
T TIGR03723 131 LLVSGGHTQ-LVLVKGVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFK 194 (314)
T ss_pred EEEeCCCcE-EEEEecCCeEEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeE
Confidence 456665533 4556667899999886 344566666666556654333 499999999865444
No 48
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=68.28 E-value=40 Score=31.92 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=30.8
Q ss_pred EEEEecCCceEEEEEeCCCceEEeeccc-----cCchhHHhhhhh
Q 025826 170 YLLVNIGSGVSMIKVDGDGKFERISGTS-----VGGGTFWGLGRL 209 (247)
Q Consensus 170 yLlVNIGSGvSi~kv~~~~~~~RVgGss-----iGGGT~~GL~~L 209 (247)
=++|-.|||.-.+...+ ++-.|+||-+ -|.|.-+|.--|
T Consensus 119 Gii~i~GTGSi~~~~~g-g~~~r~GG~Gf~IgDegSga~ig~~~L 162 (301)
T COG2971 119 GIIVIAGTGSIGYGRKG-GRRERVGGWGFPIGDEGSGAWIGREAL 162 (301)
T ss_pred CEEEEecCCeEEEEEeC-CeeEEecCcCccccccchHHHHHHHHH
Confidence 48999999998888866 8999999965 467777775443
No 49
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=67.59 E-value=7.4 Score=36.01 Aligned_cols=44 Identities=30% Similarity=0.488 Sum_probs=37.5
Q ss_pred EEEEecCCcc--cchHHHHHHhCCcccee-hhhhhhhhhHHHHHhhc
Q 025826 102 LIKATGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKAV 145 (247)
Q Consensus 102 ~i~~TGGga~--k~~~~~~~~lg~~~~k~-dEm~cli~G~~fLl~~i 145 (247)
.|.+|||+|. .+.+.+++.+++++... +=++|+..|+.+.+.+.
T Consensus 278 ~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 278 GIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 5999999995 78899999999987655 48999999999998753
No 50
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=67.05 E-value=51 Score=29.37 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=24.9
Q ss_pred EEEEecCCceEEEEEeCCCceEEeeccccCchhH
Q 025826 170 YLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTF 203 (247)
Q Consensus 170 yLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~ 203 (247)
-++++||.|++=+.+-..++........+||-.|
T Consensus 110 ~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~~i 143 (239)
T TIGR02529 110 GAVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143 (239)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEEEeeecchHHH
Confidence 3999999998866665556666666667777654
No 51
>PRK13328 pantothenate kinase; Reviewed
Probab=66.80 E-value=91 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.6
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCch
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGG 201 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGG 201 (247)
.|+++|.+||-+.|=.|+.++ +++||..+=|=
T Consensus 118 ~~~lViD~GTA~TiD~v~~~g--~~lGG~I~PG~ 149 (255)
T PRK13328 118 EHLLIATFGTATTLDALRADG--RFAGGLILPGL 149 (255)
T ss_pred CCEEEEEcCCceEEEEEcCCC--cEeeEEecCCH
Confidence 479999999999999998865 56687755543
No 52
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=62.45 E-value=8.8 Score=35.09 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=37.7
Q ss_pred EEEEecCCc--ccchHHHHHHhCCccceeh-hhhhhhhhHHHHHhhcC
Q 025826 102 LIKATGGGA--YKFADLIKEKLGVVLDKED-EMDCLVTGANFLLKAVH 146 (247)
Q Consensus 102 ~i~~TGGga--~k~~~~~~~~lg~~~~k~d-Em~cli~G~~fLl~~i~ 146 (247)
.|.+|||+| -.+.+.+++++++++...+ =+.++..|+.+++.+.+
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENLD 330 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhChH
Confidence 499999999 7788999999998876664 59999999999986543
No 53
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=61.45 E-value=8.3 Score=35.89 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=37.0
Q ss_pred EEEEecCCc--ccchHHHHHHhCCcccee-hhhhhhhhhHHHHHhh
Q 025826 102 LIKATGGGA--YKFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKA 144 (247)
Q Consensus 102 ~i~~TGGga--~k~~~~~~~~lg~~~~k~-dEm~cli~G~~fLl~~ 144 (247)
.|.+|||+| .-+.+.+++++++++... +=++|+..|+.-.+++
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~~ 326 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSLEV 326 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHHC
Confidence 499999999 478899999999988765 6789999999988874
No 54
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=57.19 E-value=11 Score=34.86 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=31.4
Q ss_pred eEEEEecCCcccchHHHHHHhCC-ccceehh-hhhhhhhHHHH
Q 025826 101 TLIKATGGGAYKFADLIKEKLGV-VLDKEDE-MDCLVTGANFL 141 (247)
Q Consensus 101 ~~i~~TGGga~k~~~~~~~~lg~-~~~k~dE-m~cli~G~~fL 141 (247)
..|.+|||||.-+++.|++.+.- .+..+++ .-|..+|...+
T Consensus 275 ~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 275 QNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred cEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 46999999999999999988874 4445666 66778886544
No 55
>PRK03011 butyrate kinase; Provisional
Probab=56.89 E-value=20 Score=34.31 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.4
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEe
Q 025826 168 YPYLLVNIGSGVSMIKVDGDGKFERI 193 (247)
Q Consensus 168 ~PyLlVNIGSGvSi~kv~~~~~~~RV 193 (247)
.-++++.+|+|+|+-.+.+ ++..+.
T Consensus 176 ~n~I~~hLGtGig~gai~~-Gk~idg 200 (358)
T PRK03011 176 LNLIVAHLGGGISVGAHRK-GRVIDV 200 (358)
T ss_pred CcEEEEEeCCCceeeEEEC-CEEEec
Confidence 3589999999999988876 554443
No 56
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=54.25 E-value=15 Score=34.64 Aligned_cols=43 Identities=23% Similarity=0.178 Sum_probs=31.5
Q ss_pred eEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826 101 TLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (247)
Q Consensus 101 ~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~ 143 (247)
..|.+|||||.-+++.|++.++--..-.|=.-+.++|...+-.
T Consensus 293 d~IiL~GGGA~ll~~~lk~~f~~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 293 DRVIVTGGGANIFFDSLSHWYSDVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHcCCeEEcCChHHHHHHHHHHHHH
Confidence 5699999999999999999887422223445577788776654
No 57
>PLN02666 5-oxoprolinase
Probab=52.81 E-value=19 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeec
Q 025826 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET 70 (247)
Q Consensus 19 ~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t 70 (247)
+...+||||+|||.|-+|.+.+ .+++++..|-+|
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~------------------~~~~~~~~K~~s 40 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVP------------------GGSDFRVLKLLS 40 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEec------------------CCCeEEEEEeCC
Confidence 4467899999999999998763 234577788887
No 58
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=50.30 E-value=18 Score=33.11 Aligned_cols=44 Identities=30% Similarity=0.527 Sum_probs=36.6
Q ss_pred EEEEecCCc--ccchHHHHHHhCCcccee-hhhhhhhhhHHHHHhhc
Q 025826 102 LIKATGGGA--YKFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKAV 145 (247)
Q Consensus 102 ~i~~TGGga--~k~~~~~~~~lg~~~~k~-dEm~cli~G~~fLl~~i 145 (247)
.|.+|||++ --+.+.+++++++++... +-++|+..|+.....+.
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhhH
Confidence 499999999 456899999999877654 58999999999998754
No 59
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.61 E-value=24 Score=36.77 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.4
Q ss_pred CeEEEEcCcceeEEEEEeecC
Q 025826 22 SHLALDIGGSLIKVVYFLRSN 42 (247)
Q Consensus 22 ~~~giDIGGSL~KlvYf~~~~ 42 (247)
..||||+|||.|=.|+++..+
T Consensus 3 ~~iGID~GGTfTDaV~~~~~~ 23 (674)
T COG0145 3 LRIGIDVGGTFTDAVLLDEDG 23 (674)
T ss_pred eEEEEEcCCCcEeEEEEeCCC
Confidence 479999999999999988654
No 60
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=47.74 E-value=39 Score=28.14 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=27.7
Q ss_pred ceEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHH
Q 025826 100 KTLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGAN 139 (247)
Q Consensus 100 ~~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~ 139 (247)
...|.++||++ .-+...+.+.++.++.+.+.=++-..|.-
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA 191 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAA 191 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHH
Confidence 36799999998 44566777788998887754444444443
No 61
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=46.28 E-value=23 Score=32.64 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=36.0
Q ss_pred EEEEecCCc--ccchHHHHHHhCCccceeh-hhhhhhhhHHHHHhh
Q 025826 102 LIKATGGGA--YKFADLIKEKLGVVLDKED-EMDCLVTGANFLLKA 144 (247)
Q Consensus 102 ~i~~TGGga--~k~~~~~~~~lg~~~~k~d-Em~cli~G~~fLl~~ 144 (247)
.|.+|||+| -.+.+.+++++++++...+ =+.|+..|+.-++.+
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 599999999 5778999999999877664 789999999887754
No 62
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=45.76 E-value=25 Score=32.58 Aligned_cols=38 Identities=34% Similarity=0.287 Sum_probs=26.4
Q ss_pred eEEEEecCCcccchHHHHHHhCC---cccee-hhhhhhhhhH
Q 025826 101 TLIKATGGGAYKFADLIKEKLGV---VLDKE-DEMDCLVTGA 138 (247)
Q Consensus 101 ~~i~~TGGga~k~~~~~~~~lg~---~~~k~-dEm~cli~G~ 138 (247)
..|.+|||||..+++.|++.++. +++.. |---|+++|+
T Consensus 274 ~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 274 DRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 56999999999999999999874 33222 2344566664
No 63
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=44.92 E-value=41 Score=33.51 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=34.0
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~ 143 (247)
..|.++||+| -.+..++.+.+|++|.+.++=++-..|.-.|..
T Consensus 445 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~ 489 (541)
T TIGR01315 445 KSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGA 489 (541)
T ss_pred cEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHH
Confidence 4699999998 556677788889999888887777777777653
No 64
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=44.28 E-value=2.2e+02 Score=26.24 Aligned_cols=133 Identities=23% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCCeEEEEEeeccCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhH
Q 025826 59 LEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGA 138 (247)
Q Consensus 59 ~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~ 138 (247)
..|+||-.-+.+..-.+++++|+...... +..-+.|+---....+.+ .++|.++...+=+.++-...
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kV------------kFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~tsl~aa~ 80 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKV------------KFVTNTTKESKRNLHERL-QRLGFDVSEEEIFTSLPAAR 80 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceE------------EEEecCcchhHHHHHHHH-HHhCCCccHHHhcCccHHHH
Confidence 45666666666777778888888542221 111222322223333333 34788888888888888888
Q ss_pred HHHHhhcCCcceEeeCC-C-eeeeecCCC---------------------------CCccEEEEecCCceEEEEEeCCCc
Q 025826 139 NFLLKAVHQEAFTYVDG-Q-KEFVQIDQN---------------------------DLYPYLLVNIGSGVSMIKVDGDGK 189 (247)
Q Consensus 139 ~fLl~~i~~e~f~~~~~-~-~~~~~~~~~---------------------------~~~PyLlVNIGSGvSi~kv~~~~~ 189 (247)
+++.++--.. |.+.+. - .+|-.+++. +..--+|+.||-| .=
T Consensus 81 ~~~~~~~lrP-~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kg---------ry 150 (262)
T KOG3040|consen 81 QYLEENQLRP-YLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKG---------RY 150 (262)
T ss_pred HHHHhcCCCc-eEEEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCc---------ee
Confidence 8887653322 333221 1 112111111 1111245555533 45
Q ss_pred eEEeeccccCchhHHhhhhhhcCCC
Q 025826 190 FERISGTSVGGGTFWGLGRLLTNCK 214 (247)
Q Consensus 190 ~~RVgGssiGGGT~~GL~~LLtg~~ 214 (247)
|+|+.|-.+|=|+|.--...-||++
T Consensus 151 ykr~~Gl~lgpG~fv~aLeyatg~~ 175 (262)
T KOG3040|consen 151 YKRVDGLCLGPGPFVAALEYATGCE 175 (262)
T ss_pred eeeccccccCchHHHHHhhhccCce
Confidence 8999999999999998888888753
No 65
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=43.23 E-value=36 Score=29.46 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=24.7
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeecccc
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSV 198 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssi 198 (247)
-.|+++|.+||.+.+=.|+.++ +++||..+
T Consensus 119 ~~~~lViD~GTA~Tid~v~~~g--~~~GG~I~ 148 (206)
T PF03309_consen 119 GQPCLVIDAGTATTIDVVDADG--QHLGGAIL 148 (206)
T ss_dssp TSSEEEEEESSEEEEEEEETTS--EEEEEEEE
T ss_pred CCCEEEEEcCCeEEEEEEcCCC--eEEEEEEC
Confidence 4789999999999999999755 47777643
No 66
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=43.09 E-value=49 Score=28.81 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=16.2
Q ss_pred eEEEEcCcceeEEEEEee
Q 025826 23 HLALDIGGSLIKVVYFLR 40 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~ 40 (247)
.+|||||.|-+|++-|..
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 589999999999999883
No 67
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=40.41 E-value=1.2e+02 Score=29.94 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=66.5
Q ss_pred eEEEEecCCc--------ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEE
Q 025826 101 TLIKATGGGA--------YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 172 (247)
Q Consensus 101 ~~i~~TGGga--------~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLl 172 (247)
..|++|-|=- .-+++-|...++++++.++.++|-+....+. + ...+|..|
T Consensus 71 d~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~~-~---------------------~~~~~l~l 128 (535)
T PRK09605 71 DLVAFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLT-T---------------------GAEDPVTL 128 (535)
T ss_pred CEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhhc-c---------------------CCCCCeEE
Confidence 5688886641 2245566677789999999999877654432 1 11356777
Q ss_pred EecCCceEEEEEeCCCceEEeeccc-cCchhHHhhhhhhcCCCCH--HHHHHHHhCCCC
Q 025826 173 VNIGSGVSMIKVDGDGKFERISGTS-VGGGTFWGLGRLLTNCKSF--DELLELSHQGNN 228 (247)
Q Consensus 173 VNIGSGvSi~kv~~~~~~~RVgGss-iGGGT~~GL~~LLtg~~~f--deil~lA~~Gd~ 228 (247)
+--|..++++.+++ ++|++++.|. ..-|-++--+..+.|.... -.+..+|..|+.
T Consensus 129 ~vsGg~t~~~~~~~-~~~~~l~~t~d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~ 186 (535)
T PRK09605 129 YVSGGNTQVLAYLN-GRYRVFGETLDIGVGNALDKFARHVGLPHPGGPKIEKLAKDGKK 186 (535)
T ss_pred EEecCCeEEEEEcC-CeEEEEEeecchhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCC
Confidence 77777888999998 8999998862 3444444444333343222 235667777764
No 68
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=38.73 E-value=86 Score=24.89 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=30.7
Q ss_pred EEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeec--cCHHHHHHHHHhhc
Q 025826 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET--SKIIDCLEFIRSKN 84 (247)
Q Consensus 24 ~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t--~~i~~~i~fi~~~~ 84 (247)
+|||++-...=++++.+. +..+...+|+. ..+.++++|+++..
T Consensus 2 vGiDv~k~~~~v~v~~~~------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~ 46 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDPN------------------GEKLRRFKFENDPAGLEKLLDWLASLG 46 (144)
T ss_pred EEEEcccCeEEEEEEcCC------------------CcEEEEEEEeccccchhHHhhhhcccc
Confidence 799999877667765522 23566777877 57788888887763
No 69
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=38.42 E-value=82 Score=30.78 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.5
Q ss_pred eEEEEcCcceeEEEEEeec
Q 025826 23 HLALDIGGSLIKVVYFLRS 41 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~ 41 (247)
.+|||||+|.+|.+-|...
T Consensus 3 ~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 5899999999999988843
No 70
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=38.32 E-value=25 Score=35.30 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCeEEEEcCcceeEEEEEeecCCCC-------CCccCCCCCCCCCCCCeEEEEEeecc-CHH--HHHHHHHhhcccccCc
Q 025826 21 ISHLALDIGGSLIKVVYFLRSNGSG-------GSVDDSGKKSDPVLEGRLHFAKFETS-KII--DCLEFIRSKNLHLAGF 90 (247)
Q Consensus 21 ~~~~giDIGGSL~KlvYf~~~~~~~-------~~~~~~~~~~~~~~~g~l~F~~F~t~-~i~--~~i~fi~~~~~~~~~~ 90 (247)
+-.+|||||.|.|++|+ ++-.-+. |+-.-...+ -.-...+||.-+.+. .|| ..-+++++ .....++
T Consensus 3 i~SVGIDIGTSTTQlvf-Srl~l~n~a~~~~vPri~I~dke--ViYrS~I~fTPl~~~~~ID~~al~~iv~~-eY~~Agi 78 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVF-SRLTLENRASGFSVPRIEIVDKE--VIYRSPIYFTPLLSQTEIDAEALKEIVEE-EYRKAGI 78 (473)
T ss_pred eEEEEEeecCCceeEEE-EEeEEEeccCCCccceEEEeccE--EEecCCccccCCCCCCccCHHHHHHHHHH-HHHHcCC
Confidence 45799999999999999 5432110 100000000 012455777777753 444 23344433 2223333
Q ss_pred cccCCCCCCceEEEEecCCcccchH-----HHHHHhCCcc--ceehhhhhhhhh----HHHHHhhcCCcceEeeCCCeee
Q 025826 91 RHHDASASDKTLIKATGGGAYKFAD-----LIKEKLGVVL--DKEDEMDCLVTG----ANFLLKAVHQEAFTYVDGQKEF 159 (247)
Q Consensus 91 ~~~~~~~~~~~~i~~TGGga~k~~~-----~~~~~lg~~~--~k~dEm~cli~G----~~fLl~~i~~e~f~~~~~~~~~ 159 (247)
.+ .+.+...|.+||=-|.|-.. .+.+..|-=+ --=..+|+++.| ..-+.+
T Consensus 79 ~p---~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~---------------- 139 (473)
T PF06277_consen 79 TP---EDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSK---------------- 139 (473)
T ss_pred CH---HHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhh----------------
Confidence 22 12235779999988876432 2222233100 011356666543 232222
Q ss_pred eecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 025826 160 VQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 200 (247)
Q Consensus 160 ~~~~~~~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGG 200 (247)
+...+-+=+.||-|||=+.+=..++-.--+=--|||
T Consensus 140 -----~~~~~V~NiDIGGGTtN~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 140 -----EHHTVVANIDIGGGTTNIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred -----hhCCeEEEEEeCCCceeEEEEECCEEEEEEEEeecc
Confidence 122334566788898877766655444333334444
No 71
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=37.46 E-value=4.8e+02 Score=26.84 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=25.4
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 025826 167 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 200 (247)
Q Consensus 167 ~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGG 200 (247)
..|+|+|++||.+.+=.|+.++. +.||..+=|
T Consensus 448 ~~~~lVvD~GTA~TiD~v~~~g~--~lGG~I~PG 479 (592)
T PRK13325 448 RNACVVVSCGTAVTVDALTDDGH--YLGGTIMPG 479 (592)
T ss_pred CCCEEEEEcCCceEEEEEcCCCc--EeEEEECCc
Confidence 35899999999999999998764 467765544
No 72
>PRK04123 ribulokinase; Provisional
Probab=37.35 E-value=49 Score=32.79 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=30.1
Q ss_pred eEEEEecCC-c--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGG-A--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGg-a--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++||| | -.+..++.+.+|++|.+.++-++-..|.-.+.
T Consensus 440 ~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA 484 (548)
T PRK04123 440 EEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFA 484 (548)
T ss_pred ceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHH
Confidence 569999999 6 34466777888988877766666566665554
No 73
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=37.32 E-value=27 Score=34.23 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=16.5
Q ss_pred eEEEEcCcceeEEEEEeec
Q 025826 23 HLALDIGGSLIKVVYFLRS 41 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~ 41 (247)
.+|||||+|.+|++-|...
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 4899999999999988743
No 74
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=36.58 E-value=66 Score=31.48 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.0
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++|||| -.+-.++.+.+|++|.+.++ ++-..|.-.+.
T Consensus 377 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a 419 (471)
T PRK10640 377 SQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQ 419 (471)
T ss_pred ceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHH
Confidence 5699999998 45666777889999977765 66555655443
No 75
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=35.35 E-value=23 Score=35.09 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=60.5
Q ss_pred eEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCc-e
Q 025826 101 TLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSG-V 179 (247)
Q Consensus 101 ~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSG-v 179 (247)
..+.+||=|..... +. .-..+.|+.|..+|+.||...+. -++.||-= .
T Consensus 231 ~~ivaTGYGR~~i~------f~-ad~vitEItcHA~GA~~l~P~vr------------------------TIIDIGGQDs 279 (432)
T TIGR02259 231 RYLVGTGYGRVRLP------FP-KEHIRSEILCHGLGAHLMYPGTR------------------------TVLDIGGQDT 279 (432)
T ss_pred cEEEEECccccccc------cc-ccceeeeHHHHHHHHHHHCCCCC------------------------EEEEeCCCce
Confidence 45778887765431 10 00124899999999998842111 44555542 2
Q ss_pred EEEEEeCCC---ceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCC
Q 025826 180 SMIKVDGDG---KFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGN 227 (247)
Q Consensus 180 Si~kv~~~~---~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd 227 (247)
-+++++.++ +|..=.=++=|-|.|+--..-..|. +.+|+-++|.+.+
T Consensus 280 K~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~ 329 (432)
T TIGR02259 280 KGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNM-GLHELGPLAMKSS 329 (432)
T ss_pred EEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCC-CHHHHHHHHhcCC
Confidence 245554422 4555556778889998887777775 8899999988876
No 76
>PRK10331 L-fuculokinase; Provisional
Probab=34.73 E-value=62 Score=31.42 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.3
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++|||| -.+..++.+.+|+++.+.++-++-..|.-++.
T Consensus 391 ~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la 434 (470)
T PRK10331 391 SELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFG 434 (470)
T ss_pred ceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHH
Confidence 5699999998 45566777888998887776666666666654
No 77
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=32.27 E-value=32 Score=33.08 Aligned_cols=45 Identities=33% Similarity=0.519 Sum_probs=35.0
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccce-ehhhhhhhhhHHHHHhhc
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDK-EDEMDCLVTGANFLLKAV 145 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k-~dEm~cli~G~~fLl~~i 145 (247)
.-+.+||||| .-+.+.+.++.+++++- .|=++|..+|.-..+.++
T Consensus 285 rgivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 285 RGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred CceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 3489999999 55678888999987654 455899999988877643
No 78
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=30.15 E-value=4.4e+02 Score=26.39 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=16.0
Q ss_pred eEEEEcCcceeEEEEEeec
Q 025826 23 HLALDIGGSLIKVVYFLRS 41 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~ 41 (247)
.+|||||+|.+|.|-+...
T Consensus 4 ~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred EEEEEcCchhEEEEEEcCC
Confidence 5899999999998886643
No 79
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=29.82 E-value=50 Score=29.12 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCCCCeEEEEcCcceeEEEEEeec
Q 025826 18 ESQISHLALDIGGSLIKVVYFLRS 41 (247)
Q Consensus 18 ~~~~~~~giDIGGSL~KlvYf~~~ 41 (247)
.+.-..+|||+|||--+++..+-.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEEc
Confidence 345578999999999999997743
No 80
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=29.55 E-value=42 Score=33.41 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=17.1
Q ss_pred eEEEEcCcceeEEEEEeecC
Q 025826 23 HLALDIGGSLIKVVYFLRSN 42 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~ 42 (247)
.+|||+|+|.+|.+-|....
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 47999999999999988543
No 81
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=29.23 E-value=3.6e+02 Score=24.92 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=74.8
Q ss_pred CCCeEEEEEeec----cCHHHHHHHHHhhcccccCcccc---------CCCCCCceEEEEecCCc---ccchHHHHHHhC
Q 025826 59 LEGRLHFAKFET----SKIIDCLEFIRSKNLHLAGFRHH---------DASASDKTLIKATGGGA---YKFADLIKEKLG 122 (247)
Q Consensus 59 ~~g~l~F~~F~t----~~i~~~i~fi~~~~~~~~~~~~~---------~~~~~~~~~i~~TGGga---~k~~~~~~~~lg 122 (247)
..--...+++|. ++|++.|.|=.+.-+... .... .........|.+..-.- ..|.+.| +..|
T Consensus 72 ~~vi~r~i~lP~~m~~~el~~~I~~Ea~~~iP~~-~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~-~~aG 149 (340)
T PF11104_consen 72 SSVIIRNIRLPAVMPEKELEEAIRWEAEQYIPFP-LEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELF-EEAG 149 (340)
T ss_dssp GG-EEEEEEEE----HHHHHHHHHHHHGGG-SS-----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHH-HHTT
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHHHHHhhCCCC-hhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHH-HHcC
Confidence 344455666764 577778877655433211 0000 00001123344432221 3455555 4478
Q ss_pred Cccceeh-hhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCch
Q 025826 123 VVLDKED-EMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGG 201 (247)
Q Consensus 123 ~~~~k~d-Em~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGG 201 (247)
+++.-+| +.-|+.+-+.++....+++ ....+.++|+||...+-+.+-.+++..-.--..+||.
T Consensus 150 L~~~~vDv~~~Al~r~~~~~~~~~~~~----------------~~~~~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~ 213 (340)
T PF11104_consen 150 LKPVAVDVEAFALARLFEFLEPQLPDE----------------EDAETVALVDIGASSTTVIIFQNGKPIFSRSIPIGGN 213 (340)
T ss_dssp -EEEEEEEHHHHGGGGGHHHHHTST--------------------T-EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHH
T ss_pred CceEEEeehHHHHHHHHHHHHHhCCcc----------------cccceEEEEEecCCeEEEEEEECCEEEEEEEEeeCHH
Confidence 8776665 5567778877765543311 1234689999999777666655566555556688888
Q ss_pred hHHhhhhhhcCCCCHHHHHHHHhCC
Q 025826 202 TFWGLGRLLTNCKSFDELLELSHQG 226 (247)
Q Consensus 202 T~~GL~~LLtg~~~fdeil~lA~~G 226 (247)
.+--...--.+ -+++++-++-..+
T Consensus 214 ~l~~~i~~~~~-i~~~~Ae~~k~~~ 237 (340)
T PF11104_consen 214 DLTEAIARELG-IDFEEAEELKRSG 237 (340)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCHHHHHHHHhcC
Confidence 88643333333 4777776554433
No 82
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=28.32 E-value=54 Score=25.92 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.3
Q ss_pred EEEEcCcceeEEEEEee
Q 025826 24 LALDIGGSLIKVVYFLR 40 (247)
Q Consensus 24 ~giDIGGSL~KlvYf~~ 40 (247)
++||||++.++++-++.
T Consensus 2 ~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEE-SSSEEEEEEET
T ss_pred EEEEcCCCcEEEEEEEe
Confidence 68999999999999884
No 83
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=28.23 E-value=91 Score=30.28 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.9
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~ 143 (247)
..|.++|||| -....++.+.+|+++.+.+.-++-..|.-++-.
T Consensus 395 ~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~ 439 (465)
T TIGR02628 395 SELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGF 439 (465)
T ss_pred ceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHH
Confidence 5699999998 445566677889998877766776777666543
No 84
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=28.17 E-value=96 Score=30.57 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=32.6
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++||+| -.+-.++.+.+|+++.+.+.-++-..|.-++.
T Consensus 411 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA 454 (520)
T PRK10939 411 SSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAA 454 (520)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHH
Confidence 5699999998 44566677788999998887777777776664
No 85
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=28.08 E-value=50 Score=30.37 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=15.5
Q ss_pred CCCCeEEEEcCcceeEEEEEe
Q 025826 19 SQISHLALDIGGSLIKVVYFL 39 (247)
Q Consensus 19 ~~~~~~giDIGGSL~KlvYf~ 39 (247)
..-.-+.+|||||.+.|.-..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEE
T ss_pred CCCCEEEEeCCCCEEEEEEEE
Confidence 444679999999999999976
No 86
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=28.00 E-value=1.2e+02 Score=27.42 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=22.1
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccce
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDK 127 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k 127 (247)
..|.+|||+| .-..+.+++.+++++..
T Consensus 223 ~~IvLtGG~s~lpgl~e~l~~~lg~~v~~ 251 (267)
T PRK15080 223 EDIYLVGGTCCLPGFEEVFEKQTGLPVHK 251 (267)
T ss_pred CEEEEECCcccchhHHHHHHHHhCCCccc
Confidence 5699999999 55788999999987654
No 87
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=27.90 E-value=4.9e+02 Score=24.12 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred eEEEEecCC-cc-------cchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEE
Q 025826 101 TLIKATGGG-AY-------KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 172 (247)
Q Consensus 101 ~~i~~TGGg-a~-------k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLl 172 (247)
..|.+|-|= .+ .+.+-+...++++++-++.++|-.....+- . ..-+|.+|
T Consensus 68 d~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~~~v~h~~aHa~sa~~~-s---------------------~~~~~lvL 125 (322)
T TIGR03722 68 DAVAFSQGPGLGPCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLT-T---------------------GAKDPVVL 125 (322)
T ss_pred CEEEEecCCchHHhHHHHHHHHHHHHHHhCCCeechhhHHHHHHhhhcc-C---------------------CCCCCeEE
Confidence 457777643 21 235555666778888888887766543331 1 11356666
Q ss_pred EecCCceEEEEEeCCCceEEeecc-ccCchhHHhhhhhhcCCCC---HHHHHHHHhCCCC
Q 025826 173 VNIGSGVSMIKVDGDGKFERISGT-SVGGGTFWGLGRLLTNCKS---FDELLELSHQGNN 228 (247)
Q Consensus 173 VNIGSGvSi~kv~~~~~~~RVgGs-siGGGT~~GL~~LLtg~~~---fdeil~lA~~Gd~ 228 (247)
+--|.=+++.+++ .++++.++.| -.+=|-|+--+..+.|... . ++-++|.+|+.
T Consensus 126 ~vsGg~t~l~~~~-~~~~~~l~~t~d~s~GrlfDava~~LGl~~~G~~-~le~la~~~~~ 183 (322)
T TIGR03722 126 YVSGGNTQVIAYR-NGRYRVFGETLDIGLGNALDKFAREVGLGHPGGP-KIEELAEKGKE 183 (322)
T ss_pred EEeCCceEEEEEe-CCeEEEEEEeccccchHHHHHHHHHhCCCCCChH-HHHHHHhcCCC
Confidence 6667667788888 4789999887 2444444444444444332 2 44557877753
No 88
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.24 E-value=73 Score=27.25 Aligned_cols=68 Identities=16% Similarity=0.397 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhC----Cccceeh-hhhhhhhhHHHHHhhcC
Q 025826 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLG----VVLDKED-EMDCLVTGANFLLKAVH 146 (247)
Q Consensus 72 ~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg----~~~~k~d-Em~cli~G~~fLl~~i~ 146 (247)
-|++|++||.++++...|+ ...- |.+.+. +.+++.+. +.+...+ ..+++..-+.-++++.|
T Consensus 18 ~l~~~i~~l~~~gl~~eGI------------FR~~-G~~~~i-~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLreLP 83 (185)
T cd04373 18 FLEKCVEFIEATGLETEGI------------YRVS-GNKTHL-DSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELP 83 (185)
T ss_pred HHHHHHHHHHHcCCCCCCe------------eecC-CcHHHH-HHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHhcCC
Confidence 3678999999877765442 2332 333333 33344333 2322222 35677777777888888
Q ss_pred CcceEee
Q 025826 147 QEAFTYV 153 (247)
Q Consensus 147 ~e~f~~~ 153 (247)
+.+++|+
T Consensus 84 ePlip~~ 90 (185)
T cd04373 84 DPLIPYS 90 (185)
T ss_pred chhccHH
Confidence 7777765
No 89
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=26.94 E-value=1e+02 Score=30.65 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=30.2
Q ss_pred eEEEEecCC-c--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGG-A--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGg-a--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++||| | -.+..++.+.+|++|.+...-++-..|.-.+.
T Consensus 437 ~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA 481 (536)
T TIGR01234 437 EELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFA 481 (536)
T ss_pred ceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHH
Confidence 569999999 6 34456777888998877766666666655553
No 90
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=26.79 E-value=40 Score=31.96 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.9
Q ss_pred CeEEEEcCcceeEEEEEe
Q 025826 22 SHLALDIGGSLIKVVYFL 39 (247)
Q Consensus 22 ~~~giDIGGSL~KlvYf~ 39 (247)
.-|.+|||||.++++-+.
T Consensus 129 ~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CEEEEEcCccceeeEEec
Confidence 479999999999999865
No 91
>PRK15027 xylulokinase; Provisional
Probab=26.54 E-value=1e+02 Score=29.99 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=28.4
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhh-hhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMD-CLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~-cli~G~~fLl 142 (247)
..|.++|||| -....++.+.+|+++.+..+.+ +-..|.-++.
T Consensus 388 ~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 388 QSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred cEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHH
Confidence 5699999997 4556677788899985553332 4455655554
No 92
>PRK00047 glpK glycerol kinase; Provisional
Probab=26.40 E-value=1.1e+02 Score=30.04 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=30.7
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++|||| -.+..++.+.+|+++.+.+.=++-..|.-.+.
T Consensus 405 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A 448 (498)
T PRK00047 405 KELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLA 448 (498)
T ss_pred ceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHH
Confidence 5699999997 56677788889998887665555556655554
No 93
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=25.91 E-value=1.9e+02 Score=29.12 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCCCCCeEEEEcCcceeEEEEEeec
Q 025826 14 GDESESQISHLALDIGGSLIKVVYFLRS 41 (247)
Q Consensus 14 ~~~~~~~~~~~giDIGGSL~KlvYf~~~ 41 (247)
|.+ ++.-.-++||.|||--|+|-..-.
T Consensus 69 p~g-~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 69 PTG-NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCC-CCCCCEEEEecCCceEEEEEEEeC
Confidence 355 788899999999999999997754
No 94
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=25.23 E-value=36 Score=29.79 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.3
Q ss_pred CeEEEEcCcceeE
Q 025826 22 SHLALDIGGSLIK 34 (247)
Q Consensus 22 ~~~giDIGGSL~K 34 (247)
.+-|||||.||+=
T Consensus 121 A~aGiDIGdTlIG 133 (172)
T PF04260_consen 121 ADAGIDIGDTLIG 133 (172)
T ss_dssp BSEEEEESS---G
T ss_pred eccCcccccceee
Confidence 5679999999973
No 95
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=25.15 E-value=1.1e+02 Score=29.89 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=31.3
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++||+| -.+...+.+.+|.++.+.+.=++-..|.-++.
T Consensus 401 ~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a 444 (493)
T TIGR01311 401 TKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAA 444 (493)
T ss_pred ceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHH
Confidence 5699999998 46677778889988877665566666666554
No 96
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.07 E-value=61 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccc
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLD 126 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~ 126 (247)
..|.+|||+| --..+.+++.+++++.
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg~~v~ 223 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLGLNVI 223 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhCCCcc
Confidence 4699999999 4468888888888764
No 97
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=24.90 E-value=2.1e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.3
Q ss_pred cccCchhHHhhhhhhcCCCCHHHHHHHHhCC
Q 025826 196 TSVGGGTFWGLGRLLTNCKSFDELLELSHQG 226 (247)
Q Consensus 196 ssiGGGT~~GL~~LLtg~~~fdeil~lA~~G 226 (247)
+.+-|+.++-|+.+|.|..+.+|+.+.+..+
T Consensus 25 ~~l~~~~~~~L~~lLdG~rt~~eI~~~l~~~ 55 (193)
T TIGR03882 25 FALSGALYCQLAPLLDGRRTLDEIIAALAGR 55 (193)
T ss_pred EEEcchhHHHHHHHHcCCCCHHHHHHHhhcc
Confidence 3455889999999999999999998887664
No 98
>PRK00047 glpK glycerol kinase; Provisional
Probab=24.75 E-value=57 Score=31.94 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.0
Q ss_pred eEEEEcCcceeEEEEEeecC
Q 025826 23 HLALDIGGSLIKVVYFLRSN 42 (247)
Q Consensus 23 ~~giDIGGSL~KlvYf~~~~ 42 (247)
.+|||+|+|.+|.+-|....
T Consensus 7 ~lgiD~GTts~Ka~l~d~~g 26 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHDG 26 (498)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 58999999999998887543
No 99
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=24.40 E-value=36 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=21.8
Q ss_pred eEEEEecCCcccc-hHHHHHHhCCccceehhhhh
Q 025826 101 TLIKATGGGAYKF-ADLIKEKLGVVLDKEDEMDC 133 (247)
Q Consensus 101 ~~i~~TGGga~k~-~~~~~~~lg~~~~k~dEm~c 133 (247)
..|.+-|-.+++| ...+.+..++++...+|+-+
T Consensus 28 PDivL~G~ef~e~~~~~~l~~~~lkvy~i~ELg~ 61 (85)
T PF08967_consen 28 PDIVLVGPEFYEFLSEEVLEVSGLKVYVIEELGS 61 (85)
T ss_dssp --EEEE-HHHHHHHHH---EETTEEEEE-GGGTT
T ss_pred CCEEEEcHHHHHHHHHHHHHhhCceEEEHHhcCC
Confidence 3489999999999 56666778899999999843
No 100
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=24.30 E-value=80 Score=29.01 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCCeEEEEEeeccCHHHHHHHHHhh
Q 025826 58 VLEGRLHFAKFETSKIIDCLEFIRSK 83 (247)
Q Consensus 58 ~~~g~l~F~~F~t~~i~~~i~fi~~~ 83 (247)
..+||++|.+ ...+++++|+||++.
T Consensus 210 ~~GGRvffv~-~~~d~~~~i~yLe~~ 234 (239)
T PF03744_consen 210 PKGGRVFFVD-GSIDIEELIDYLENQ 234 (239)
T ss_pred CCCCEEEEEe-CCCCHHHHHHHHhcC
Confidence 3799999988 556889999999654
No 101
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=24.19 E-value=56 Score=26.34 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=26.7
Q ss_pred ccccCchhHHhhhhhhcCCCCHHHHHHHHhC
Q 025826 195 GTSVGGGTFWGLGRLLTNCKSFDELLELSHQ 225 (247)
Q Consensus 195 GssiGGGT~~GL~~LLtg~~~fdeil~lA~~ 225 (247)
|--+||.-+=||+..|++..-...|+++|++
T Consensus 12 GVvlGGsliGglga~l~~~pPl~~m~~lA~~ 42 (102)
T PF14034_consen 12 GVVLGGSLIGGLGAFLTGQPPLKTMLDLAND 42 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5568888889999999999999999998863
No 102
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=23.64 E-value=1.4e+02 Score=28.79 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.6
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl 142 (247)
..|.++|||| -.+..++.+.+|+++.... -++-..|.-.+.
T Consensus 389 ~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a 431 (454)
T TIGR02627 389 SQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQ 431 (454)
T ss_pred CEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHH
Confidence 5699999998 4556667788899886654 345566655443
No 103
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=23.42 E-value=4e+02 Score=25.60 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCcceeEEEEEeecCCCCCCccCCCCCCCCCCCCeEEEEEeeccCHHHHH-HHHHhhcccccCcccc---C
Q 025826 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCL-EFIRSKNLHLAGFRHH---D 94 (247)
Q Consensus 19 ~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~t~~i~~~i-~fi~~~~~~~~~~~~~---~ 94 (247)
...+.+.=|||||-+.+.-.+..+.+. .+...+...-|+ .+++.+ +|+.+..... ..+. .
T Consensus 4 ~~~p~LvgDIGGTnaRfaLv~~a~~~~------------~~~~~~~~~dyp--sle~av~~yl~~~~~~~--~~~a~~Ai 67 (320)
T COG0837 4 MGYPRLVGDIGGTNARFALVEIAPAEP------------LQAETYACADYP--SLEEAVQDYLSEHTAVA--PRSACFAI 67 (320)
T ss_pred CCCceEEEecCCcceEEEEeccCCCCc------------cccceecccCcC--CHHHHHHHHHHHhhccC--ccceEEEE
Confidence 445666779999999999877543211 111233333344 467766 5776651110 0000 0
Q ss_pred CCCCCceEEEEecCCcccchHHHHHHhCC-ccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEEE
Q 025826 95 ASASDKTLIKATGGGAYKFADLIKEKLGV-VLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLV 173 (247)
Q Consensus 95 ~~~~~~~~i~~TGGga~k~~~~~~~~lg~-~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLlV 173 (247)
-.......|.+|=.--.-=.+.++..||+ .+.-.+.|++...++--|-.+ ..-+.-.. ....--|..+.
T Consensus 68 AgPv~gd~v~lTN~~W~~s~~~~r~~Lgl~~v~liNDF~A~A~Ai~~l~~~---dl~qigg~-------~~~~~a~~avl 137 (320)
T COG0837 68 AGPIDGDEVRLTNHDWVFSIARMRAELGLDHLSLINDFAAQALAIPRLGAE---DLEQIGGG-------KPEPNAPRAVL 137 (320)
T ss_pred ecCccCCEEeeecCcccccHHHHHHhcCCCcEEEechHHHHHhhccccCHH---HHHHhcCC-------CCCCCCceEEE
Confidence 00112356777766654445667788997 888899999999887766431 00000000 12334677888
Q ss_pred ecCC--ceEEEE
Q 025826 174 NIGS--GVSMIK 183 (247)
Q Consensus 174 NIGS--GvSi~k 183 (247)
--|| ||+-+-
T Consensus 138 GPGTGLGVa~Lv 149 (320)
T COG0837 138 GPGTGLGVAGLV 149 (320)
T ss_pred cCCCCcceEEEE
Confidence 7777 455443
No 104
>PRK11678 putative chaperone; Provisional
Probab=23.22 E-value=67 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=35.1
Q ss_pred eEEEEecCCc--ccchHHHHHHhC-CccceehhhhhhhhhHHHHH
Q 025826 101 TLIKATGGGA--YKFADLIKEKLG-VVLDKEDEMDCLVTGANFLL 142 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg-~~~~k~dEm~cli~G~~fLl 142 (247)
..|.+|||.+ -...+.+++.++ .++..-+.+.++..|+-..-
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a 445 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWA 445 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHH
Confidence 4699999998 466788888886 68899999999999987653
No 105
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.14 E-value=92 Score=27.28 Aligned_cols=68 Identities=10% Similarity=0.254 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCC----ccceehhhhhhhhhHHHHHhhcCC
Q 025826 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV----VLDKEDEMDCLVTGANFLLKAVHQ 147 (247)
Q Consensus 72 ~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~----~~~k~dEm~cli~G~~fLl~~i~~ 147 (247)
-+++|++||+++++...|+ ..+.|-.+ . -+.+++.+.- .+........+..-+.-++++.|+
T Consensus 12 iv~~ci~~l~~~gl~~EGI------------FR~~G~~~-~-i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPe 77 (206)
T cd04376 12 LVESCCQHLEKHGLQTVGI------------FRVGSSKK-R-VRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPD 77 (206)
T ss_pred HHHHHHHHHHHcCCCCCce------------eeCCCCHH-H-HHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCC
Confidence 4689999999887765543 33443222 2 3344444432 222222345566666667778887
Q ss_pred cceEee
Q 025826 148 EAFTYV 153 (247)
Q Consensus 148 e~f~~~ 153 (247)
.+++|+
T Consensus 78 PLi~~~ 83 (206)
T cd04376 78 PLLPRE 83 (206)
T ss_pred ccCCHH
Confidence 777654
No 106
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.96 E-value=2.6e+02 Score=26.92 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=60.3
Q ss_pred eEEEEecCC-c-------ccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeeecCCCCCccEEE
Q 025826 101 TLIKATGGG-A-------YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 172 (247)
Q Consensus 101 ~~i~~TGGg-a-------~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~~~~~~~~PyLl 172 (247)
..|.+|-|= . .-+.+-|.-.++++++-++.|++-+..... .+ ...||..|
T Consensus 72 d~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l-~~---------------------~~~~Pl~L 129 (345)
T PTZ00340 72 SLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRL-VT---------------------GAENPVVL 129 (345)
T ss_pred CEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhh-cc---------------------CCCCCeEE
Confidence 457777552 2 345777777889999999999998764332 11 12366444
Q ss_pred EecCCceEEEEEeCCCceEEeecc---ccCchhHHhhhhhhcCCC----CHHHHHHHHhCCCC
Q 025826 173 VNIGSGVSMIKVDGDGKFERISGT---SVGGGTFWGLGRLLTNCK----SFDELLELSHQGNN 228 (247)
Q Consensus 173 VNIGSGvSi~kv~~~~~~~RVgGs---siGGGT~~GL~~LLtg~~----~fdeil~lA~~Gd~ 228 (247)
+=-|-=|.++. .+.++|+.+|.| ++|- .|==.+++| |-. -=-.|-++|++|++
T Consensus 130 lVSGGhT~l~~-~~~~~~~ilG~T~Dda~Ge-a~DKvar~L-GL~~yp~gGp~iE~lA~~g~~ 189 (345)
T PTZ00340 130 YVSGGNTQVIA-YSEHRYRIFGETIDIAVGN-CLDRFARLL-NLSNDPAPGYNIEQLAKKGKN 189 (345)
T ss_pred EEeCCceEEEE-ecCCeEEEEEeecccchhH-HHHHHHHHh-CCCCCCCChHHHHHHHhhCCC
Confidence 33343444554 777899999988 4443 222223332 211 12445567888863
No 107
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.95 E-value=1.3e+02 Score=29.29 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=41.6
Q ss_pred EEEeeccCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCc--ccchHHHHHHhCCccceehhhhhhh
Q 025826 65 FAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLV 135 (247)
Q Consensus 65 F~~F~t~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli 135 (247)
|.-=-+.+|.+.|+|.....- ......|.++|||| .-..+.|.+++++++...+=+..+.
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~-----------~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanPf~~~~ 325 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSE-----------MVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANPFAYMA 325 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----------cceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCHHHHHh
Confidence 333345667777777655321 11246799999999 6678999999999888888766543
No 108
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=21.44 E-value=1e+02 Score=26.50 Aligned_cols=69 Identities=13% Similarity=0.418 Sum_probs=40.1
Q ss_pred cCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCC----ccceehhhhhhhhhHHHHHhhcC
Q 025826 71 SKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV----VLDKEDEMDCLVTGANFLLKAVH 146 (247)
Q Consensus 71 ~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~----~~~k~dEm~cli~G~~fLl~~i~ 146 (247)
.-++.|++||+++++...++ ..+.|..+ --+.+++.+.- .+.+.....++..-+.-.+++.|
T Consensus 24 ~~i~~~i~~l~~~gl~~eGI------------FR~~G~~~--~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLP 89 (199)
T cd04390 24 ILVEQCVDFIREHGLKEEGL------------FRLPGQAN--LVKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELP 89 (199)
T ss_pred hHHHHHHHHHHHcCCCCCCe------------eeCCCCHH--HHHHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHhCC
Confidence 34689999999887765543 33444332 12333444431 22233456667777777778888
Q ss_pred CcceEee
Q 025826 147 QEAFTYV 153 (247)
Q Consensus 147 ~e~f~~~ 153 (247)
+..+++.
T Consensus 90 ePLi~~~ 96 (199)
T cd04390 90 EPVIPWA 96 (199)
T ss_pred CccCCHH
Confidence 7776653
No 109
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=20.42 E-value=1.1e+02 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCCeEEEEEeeccCHHHHHHHHHhh
Q 025826 58 VLEGRLHFAKFETSKIIDCLEFIRSK 83 (247)
Q Consensus 58 ~~~g~l~F~~F~t~~i~~~i~fi~~~ 83 (247)
..+||++|.+=. .+++++|+||+++
T Consensus 203 ~~GGRvffv~~~-~~l~~~i~yLE~~ 227 (232)
T TIGR01204 203 ELGGRVFFVSRK-NELSEYIHCLEQK 227 (232)
T ss_pred CCCCEEEEEeCC-CCHHHHHHHHhcC
Confidence 478999998865 6999999999654
No 110
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.32 E-value=1.8e+02 Score=25.39 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhC--------Cccce-ehhhhhhhhhHHHH
Q 025826 71 SKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLG--------VVLDK-EDEMDCLVTGANFL 141 (247)
Q Consensus 71 ~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg--------~~~~k-~dEm~cli~G~~fL 141 (247)
.-+.+|++||+.+++...|+ ..+. |.+.+..++.+..+. +.+.. ..+...+..-+.-+
T Consensus 30 ~iv~~ci~~le~~gl~~EGI------------FR~s-Gs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~f 96 (203)
T cd04374 30 KFVRKCIEAVETRGINEQGL------------YRVV-GVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTY 96 (203)
T ss_pred HHHHHHHHHHHHcCCCCCCe------------eeCC-CcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHH
Confidence 35789999999988775543 2333 333333333322221 12211 22345566666667
Q ss_pred HhhcCCcceEeeC
Q 025826 142 LKAVHQEAFTYVD 154 (247)
Q Consensus 142 l~~i~~e~f~~~~ 154 (247)
+++.|+.+++|+.
T Consensus 97 LReLPePLi~~~~ 109 (203)
T cd04374 97 LRNLPEPLMTYEL 109 (203)
T ss_pred HHcCCCCcCCHHH
Confidence 7788888877643
No 111
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=20.10 E-value=85 Score=30.10 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=43.3
Q ss_pred ccEEEEecCCc-eEEEEEeCCCceEEeeccc-----cCchhHHh-hhhhh--------------------cCCCCHHHHH
Q 025826 168 YPYLLVNIGSG-VSMIKVDGDGKFERISGTS-----VGGGTFWG-LGRLL--------------------TNCKSFDELL 220 (247)
Q Consensus 168 ~PyLlVNIGSG-vSi~kv~~~~~~~RVgGss-----iGGGT~~G-L~~LL--------------------tg~~~fdeil 220 (247)
..|++|-||-+ +|++.|.+-.-.--.|||+ +|||.+=| |+.+| .|.+|++|..
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~lf~gGa~~i~gv~sp~ef~ 242 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSLLFEGGAAYIAGVDSPEEFV 242 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhheecccccccccCCCHHHHH
Confidence 45799999987 7888887733334567754 77776544 22222 2688999999
Q ss_pred HHHhCCCCC
Q 025826 221 ELSHQGNNR 229 (247)
Q Consensus 221 ~lA~~Gd~~ 229 (247)
++|+.+.|-
T Consensus 243 ~~ake~enl 251 (374)
T COG2441 243 KLAKEDENL 251 (374)
T ss_pred HHhhcccch
Confidence 999887653
No 112
>PLN02669 xylulokinase
Probab=20.04 E-value=96 Score=31.25 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=32.5
Q ss_pred eEEEEecCCc--ccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826 101 TLIKATGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (247)
Q Consensus 101 ~~i~~TGGga--~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~ 143 (247)
..|.+|||+| -.+-.++.+.+|.++.+.+.=++-..|.-++..
T Consensus 447 ~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~ 491 (556)
T PLN02669 447 KRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAA 491 (556)
T ss_pred cEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHH
Confidence 5699999998 445566777889888887776766777777654
Done!