BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025827
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 25 WTNAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAAVSTALFNNGLNCGACYAIKC 82
W A AT+Y G N+ Y TA + +F +G CG+CY ++C
Sbjct: 19 WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 78
Query: 83 VNDNRWCL--PGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQ----- 135
+ C P ++ +T N+ P P +HFDLS F +A+
Sbjct: 79 -KEKPECSGNPVTVYITDMNYEP------------IAP--YHFDLSGKAFGSLAKPGLND 123
Query: 136 --YKAGIVPVQYRRVACKKSGGIRFTINGHSYFN----LVLITNVGGAGDVVAVSIKGSK 189
GI+ V++RRV CK G + + N VL+ V GD+V + I+
Sbjct: 124 KIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKL 183
Query: 190 TG-WQALSRNWGQNWQSNS--YLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYT 243
+ W+ + +WG W+ ++ L G S ++T+ G+ VI+ +V PANW YT
Sbjct: 184 SAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 98/240 (40%), Gaps = 30/240 (12%)
Query: 22 GAGWTNAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAAVSTALFNNGLNCGACYA 79
G W +A +T+Y Y ++ + T +T +F +G CG+C+
Sbjct: 16 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75
Query: 80 IKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQ---- 135
IKC C ++V T+ A +HFDLS F +A+
Sbjct: 76 IKCTKPEA-CSGEPVVVHITDDNEEPIA------------PYHFDLSGHAFGAMAKKGDE 122
Query: 136 ---YKAGIVPVQYRRVACKKSGGIRFTINGHSYFN----LVLITNVGGAGDVVAVSIKGS 188
AG + +Q+RRV CK G + T + N +L+ V G GDVVAV IK
Sbjct: 123 QKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK 182
Query: 189 -KTGWQALSRNWGQNWQSNS--YLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGR 245
K W L +WG W+ ++ L G + + TT G + +V P W +Y +
Sbjct: 183 GKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 241
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 150 CKKSGGIRFTINGH--SYFNLVLITN--VGGAGD----VVAVSIKGSKTGWQALSRNWGQ 201
++ GI+ I+GH SY + + G D ++ ++G TGW AL G+
Sbjct: 39 LQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDAL----GR 94
Query: 202 NWQSNSYLNGQALSFKVTTSDGRT---VISNN 230
W+S S+ Q L F+ D + ++SN
Sbjct: 95 MWESRSHTLAQCLGFQEFQKDAKQAEAILSNQ 126
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 152 KSGGIRFTINGHSYFNLVLITNVGGA-GDVVAVSIKGSKTGW 192
+ G+R+ + H +LV++TN GGA + ++ +G + W
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 53 SQGYGTNTAAVSTALFNNGLNCGACYAIKCVND 85
+Q YG N+ V T ++N G + C VND
Sbjct: 307 AQNYGWNSCLVKTGVYNEGDDLKECKPTLIVND 339
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 53 SQGYGTNTAAVSTALFNNGLNCGACYAIKCVND 85
+Q YG N+ V T ++N G + C VND
Sbjct: 310 AQNYGWNSCLVKTGVYNEGDDLKECKPTLIVND 342
>pdb|4AIQ|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant)
pdb|4B7O|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant) Apoprotein Form
Length = 745
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 9/36 (25%)
Query: 216 FKVTTSDGRTVISNNVAPA---------NWNFGQTY 242
FKV T DG+TV S+N+ P+ +W+F ++
Sbjct: 469 FKVKTHDGKTVSSSNLNPSFGVIWQPHEHWSFSSSH 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,682,813
Number of Sequences: 62578
Number of extensions: 309865
Number of successful extensions: 601
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 12
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)