Query 025827
Match_columns 247
No_of_seqs 151 out of 1060
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 8.8E-72 1.9E-76 491.7 27.6 247 1-247 1-247 (247)
2 PLN00193 expansin-A; Provision 100.0 8.9E-70 1.9E-74 480.7 28.8 245 3-247 5-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 4.3E-62 9.2E-67 429.8 26.2 224 6-247 7-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.6E-28 3.4E-33 204.0 20.3 207 5-242 10-223 (232)
5 PLN03024 Putative EG45-like do 100.0 1.3E-27 2.8E-32 191.6 13.9 99 27-147 23-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 2.7E-26 6E-31 173.4 8.7 86 60-145 1-87 (87)
7 PLN00115 pollen allergen group 99.9 5.8E-24 1.3E-28 168.6 11.2 87 155-247 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 2.3E-22 5.1E-27 150.4 9.7 77 156-233 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 5.6E-19 1.2E-23 130.4 7.1 73 60-145 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 9.8E-11 2.1E-15 91.6 4.2 60 70-150 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 1.9E-05 4.2E-10 62.9 9.6 66 59-149 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00018 3.9E-09 62.3 11.1 96 28-153 1-96 (208)
13 PRK10672 rare lipoprotein A; P 97.3 0.0042 9.1E-08 58.2 11.8 94 27-150 80-173 (361)
14 COG0797 RlpA Lipoproteins [Cel 97.2 0.0013 2.8E-08 58.0 7.9 60 74-151 119-178 (233)
15 PF02015 Glyco_hydro_45: Glyco 90.2 0.3 6.6E-06 42.3 3.3 53 60-127 70-122 (201)
16 cd02854 Glycogen_branching_enz 75.8 5.9 0.00013 30.3 4.6 48 180-227 16-76 (99)
17 PRK10564 maltose regulon perip 73.6 10 0.00023 35.0 6.4 77 142-247 47-127 (303)
18 cd02110 SO_family_Moco_dimer S 55.4 26 0.00056 32.4 5.4 48 178-225 236-293 (317)
19 PF03404 Mo-co_dimer: Mo-co ox 54.4 20 0.00043 28.8 4.0 20 179-198 42-62 (131)
20 TIGR02588 conserved hypothetic 46.7 1.5E+02 0.0033 23.8 8.5 67 154-221 34-119 (122)
21 cd02855 Glycogen_branching_enz 42.1 95 0.002 22.9 5.9 34 193-226 49-85 (106)
22 PF10417 1-cysPrx_C: C-termina 41.0 15 0.00033 23.4 1.1 11 230-240 10-20 (40)
23 cd02861 E_set_proteins_like E 39.0 65 0.0014 23.1 4.4 45 181-226 14-60 (82)
24 PF07172 GRP: Glycine rich pro 38.2 23 0.00049 27.1 1.8 18 3-20 8-25 (95)
25 cd02859 AMPKbeta_GBD_like AMP- 36.8 1.4E+02 0.0029 21.5 5.8 56 169-229 4-62 (79)
26 cd02113 bact_SoxC_Moco bacteri 29.4 89 0.0019 29.1 4.6 50 176-225 236-294 (326)
27 PRK10301 hypothetical protein; 28.5 87 0.0019 24.9 3.8 27 135-161 95-124 (124)
28 PF07148 MalM: Maltose operon 28.1 68 0.0015 26.0 3.2 33 213-245 17-52 (135)
29 PF08770 SoxZ: Sulphur oxidati 27.8 1.2E+02 0.0026 23.2 4.4 17 213-229 81-97 (100)
30 PLN00177 sulfite oxidase; Prov 26.6 1.8E+02 0.0038 27.9 6.2 27 171-197 289-316 (393)
31 cd02114 bact_SorA_Moco sulfite 26.0 1.2E+02 0.0025 28.8 4.8 49 177-225 287-345 (367)
32 cd02111 eukary_SO_Moco molybdo 25.8 1.8E+02 0.004 27.4 6.1 27 171-197 269-296 (365)
33 PF12863 DUF3821: Domain of un 24.7 4.2E+02 0.009 23.2 7.6 16 213-228 131-146 (209)
34 cd02860 Pullulanase_N_term Pul 24.5 2.8E+02 0.006 20.4 5.9 33 193-225 39-73 (100)
35 COG2372 CopC Uncharacterized p 24.0 1.1E+02 0.0025 24.7 3.7 27 135-161 96-125 (127)
36 PF02922 CBM_48: Carbohydrate- 21.5 2E+02 0.0044 20.2 4.4 35 193-227 40-79 (85)
37 PF04234 CopC: CopC domain; I 21.3 97 0.0021 23.2 2.7 26 136-161 69-97 (97)
38 PRK13159 cytochrome c-type bio 20.4 1.3E+02 0.0027 25.2 3.4 28 213-240 73-101 (155)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=8.8e-72 Score=491.66 Aligned_cols=247 Identities=85% Similarity=1.465 Sum_probs=234.6
Q ss_pred ChhHHHHHHHHHHhhhccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEE
Q 025827 1 MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAI 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V 80 (247)
|--|+|-|.+||...+-+..+..+|..++|||||++++.++++|||||+++..++++.++||+|+.+|++|.+||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV 80 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI 80 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence 56799999999999999998888999999999999999889999999999888889999999999999999999999999
Q ss_pred EEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeeccCCceEEEE
Q 025827 81 KCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTI 160 (247)
Q Consensus 81 ~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~~~gni~~~v 160 (247)
+|.+.+..|.+++|+|+|||+||++++.|+.+++||++++.|||||..||.+||....|+++|+||||+|.++|||+|+|
T Consensus 81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence 99876557988999999999999988888889999998899999999999999999999999999999999999999999
Q ss_pred cCccceEEEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCe
Q 025827 161 NGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQ 240 (247)
Q Consensus 161 ~ss~~w~av~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~g~ 240 (247)
++++||++|+|.|++|+++|++|+|++++++|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|.
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ 240 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence 99889999999999999999999999987789999999999999988777779999999999999999999999999999
Q ss_pred EEeCCCC
Q 025827 241 TYTGRQF 247 (247)
Q Consensus 241 ~Y~~~~~ 247 (247)
+|++.||
T Consensus 241 ty~~~~f 247 (247)
T PLN00050 241 TYTGMQF 247 (247)
T ss_pred eEecCcC
Confidence 9999988
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=8.9e-70 Score=480.72 Aligned_cols=245 Identities=67% Similarity=1.259 Sum_probs=225.3
Q ss_pred hHHH-HHHHHHHhhhcccc-C-CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEE
Q 025827 3 ILGY-IIIALFTVFKAAVG-K-GAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYA 79 (247)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~-~-~~~~~~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~ 79 (247)
+|++ |||-|+|.+..+.+ + .++|.+++|||||++++.++.+|||||+++..++++.++||+|+++|++|++||+|||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCye 84 (256)
T PLN00193 5 LLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYR 84 (256)
T ss_pred hHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEE
Confidence 3443 45667777766666 4 5689999999999999888899999999988788999999999999999999999999
Q ss_pred EEEcC--CCCcccCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeeccCCce
Q 025827 80 IKCVN--DNRWCLPG-SIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGI 156 (247)
Q Consensus 80 V~c~~--~p~~C~~g-sv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~~~gni 156 (247)
|+|.. .+..|.++ +|+|+|||+||.++.+|+.|++||++++.|||||+.||.+||....|+++|+||||+|+++|||
T Consensus 85 v~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i 164 (256)
T PLN00193 85 IMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGV 164 (256)
T ss_pred EECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCc
Confidence 99952 35579887 9999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEEEcCccceEEEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCC
Q 025827 157 RFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANW 236 (247)
Q Consensus 157 ~~~v~ss~~w~av~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w 236 (247)
+|+|++++||++|+|.|++|+++|++|||++++++|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|
T Consensus 165 ~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W 244 (256)
T PLN00193 165 RFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANW 244 (256)
T ss_pred EEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCC
Confidence 99999999999999999999999999999998788999999999999998878777999999999999999999999999
Q ss_pred CCCeEEeCC-CC
Q 025827 237 NFGQTYTGR-QF 247 (247)
Q Consensus 237 ~~g~~Y~~~-~~ 247 (247)
++|.+|+++ ||
T Consensus 245 ~~G~ty~s~vqf 256 (256)
T PLN00193 245 GFGQTFSSSVQF 256 (256)
T ss_pred CCCCeEecCccC
Confidence 999999998 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4.3e-62 Score=429.82 Aligned_cols=224 Identities=29% Similarity=0.618 Sum_probs=196.5
Q ss_pred HHHHHHHHhhhccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCC
Q 025827 6 YIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVND 85 (247)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~ 85 (247)
+||+.+|.+...+. ..++|.+++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|++||+||||+|.+
T Consensus 7 ~~~~~~~~~~~~~~-~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~- 83 (247)
T PLN03023 7 CCFLCVIVLLPLLC-KSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA- 83 (247)
T ss_pred HHHHHHHHHhhhhh-hcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-
Confidence 45555555544433 34669999999999999999999999999987777888999998 9999999999999999976
Q ss_pred CCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc-------cCCeEEEEEEEeeeccCC-ceE
Q 025827 86 NRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQY-------KAGIVPVQYRRVACKKSG-GIR 157 (247)
Q Consensus 86 p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~-------~~G~~~i~~~~V~C~~~g-ni~ 157 (247)
+..|.+++|+|+|||.||. ++.|||||.+||.+||.+ ..|+++|+||||+|.++| +|+
T Consensus 84 ~~~C~~~~v~V~iTd~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~ 149 (247)
T PLN03023 84 PNLCSDDGVNVVVTDYGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLF 149 (247)
T ss_pred CCccCCCCeEEEEEeCCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceE
Confidence 5689999999999999985 368999999999999984 569999999999999999 999
Q ss_pred EEEc--Cc-cceEEEEEEeeCCCcceEEEEEEecC-CceeeccCCCCceEEeCCCCCCcceEEEE--EecCCcE-EEEcc
Q 025827 158 FTIN--GH-SYFNLVLITNVGGAGDVVAVSIKGSK-TGWQALSRNWGQNWQSNSYLNGQALSFKV--TTSDGRT-VISNN 230 (247)
Q Consensus 158 ~~v~--ss-~~w~av~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~~~g~p~~vRv--T~~~G~~-v~~~~ 230 (247)
|+|+ ++ ++|++|+|.|++|+++|++|||++++ ..|++|+|+||++|+++.+++| ||+||+ |..+|++ |+++|
T Consensus 150 F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~n 228 (247)
T PLN03023 150 FKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKN 228 (247)
T ss_pred EEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECc
Confidence 9997 43 88999999999999999999999965 6899999999999999888887 666666 4557755 89999
Q ss_pred ccCCCCCCCeEEeCC-CC
Q 025827 231 VAPANWNFGQTYTGR-QF 247 (247)
Q Consensus 231 vip~~w~~g~~Y~~~-~~ 247 (247)
|||++|++|+||+++ ||
T Consensus 229 ViPa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 229 VIPSDWKAGVAYDSNIQL 246 (247)
T ss_pred eeCCCCCCCCEEeccccc
Confidence 999999999999999 97
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=203.97 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhhccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCC----CCCCceEEE
Q 025827 5 GYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNG----LNCGACYAI 80 (247)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V 80 (247)
+-.++..+|....+...=..-++|.|||-+... ++||=.++. .+-+..+.|+|+++-+-| +.-|+.+||
T Consensus 10 g~v~~~~~~~s~q~s~awd~~f~G~ATyTgsGY----sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAGaYLrV 82 (232)
T COG4305 10 GMVLLTIFCFSPQASAAWDDLFEGYATYTGSGY----SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAGAYLRV 82 (232)
T ss_pred HHhhhhhhccCCCcccccccccceeEEEecccc----cCceEEecC---cCCcceeeecCHHHcccCCchhhhccceEEE
Confidence 444555555554444322444689999877543 478876543 455677999999888855 679999999
Q ss_pred EEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeeccCCceEEEE
Q 025827 81 KCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTI 160 (247)
Q Consensus 81 ~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~~~gni~~~v 160 (247)
.+ | +|+.+|.|||+.|++ ..+.||||+.||.+|.+..+|+++|+||.|+-|.+||+.+++
T Consensus 83 qG---P----KG~TTVYVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRi 142 (232)
T COG4305 83 QG---P----KGKTTVYVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRI 142 (232)
T ss_pred EC---C----CCceEEEEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEE
Confidence 98 4 578999999999982 358899999999999999999999999999999999999999
Q ss_pred c--CccceEEEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCCCC
Q 025827 161 N--GHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISN-NVAPANWN 237 (247)
Q Consensus 161 ~--ss~~w~av~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v~~~-~vip~~w~ 237 (247)
| |+.||.++|++|+. .||.++|+.+. +.|..|.+.+||+|.-.+ +...|+.+|+||+.|+.++.. -.+|..-.
T Consensus 143 KeGSs~WWAAIQVRnH~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~as 218 (232)
T COG4305 143 KEGSSRWWAAIQVRNHK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSAS 218 (232)
T ss_pred ecCCccceeeeeeeccc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccccc
Confidence 8 58999999999997 79999999985 799999999999998544 444599999999999999965 35555444
Q ss_pred CCeEE
Q 025827 238 FGQTY 242 (247)
Q Consensus 238 ~g~~Y 242 (247)
-.++.
T Consensus 219 SKaY~ 223 (232)
T COG4305 219 SKAYT 223 (232)
T ss_pred CCcee
Confidence 33333
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1.3e-27 Score=191.63 Aligned_cols=99 Identities=35% Similarity=0.657 Sum_probs=85.1
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCC----CCcccCCeEEEEEecCC
Q 025827 27 NAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVND----NRWCLPGSIIVTATNFC 102 (247)
Q Consensus 27 ~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~----p~~C~~gsv~V~V~D~C 102 (247)
+|+||||++.+ .||| |++ .+++.++||+++.+|++|..||+||||+|.+. +..|.+++|+|+|+|+|
T Consensus 23 ~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 23 PGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred ceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 79999998754 5899 444 24678999999999999999999999999652 23688889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEE
Q 025827 103 PPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRR 147 (247)
Q Consensus 103 p~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~ 147 (247)
|+. |. .|||||++||++||+++.|+++|+|.+
T Consensus 94 P~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 951 63 699999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=2.7e-26 Score=173.37 Aligned_cols=86 Identities=79% Similarity=1.449 Sum_probs=79.7
Q ss_pred EEEechhhcCCCCCCCceEEEEEcCCCCcccCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccC
Q 025827 60 TAAVSTALFNNGLNCGACYAIKCVNDNRWCLPG-SIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKA 138 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~g-sv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~ 138 (247)
+||+|+.+|++|++||+||||+|.++|..|.++ +|+|+|||+||+.+..++.+++||.++++|||||++||.+||....
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997666679886 9999999999998888888899999888999999999999999999
Q ss_pred CeEEEEE
Q 025827 139 GIVPVQY 145 (247)
Q Consensus 139 G~~~i~~ 145 (247)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.91 E-value=5.8e-24 Score=168.56 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=78.7
Q ss_pred ceEEEEc--CccceEEEEEEeeCCCcceEEEEEEecC-Ccee-eccCCCCceEEeCC--CCCCcceEEEEEecCCcEEEE
Q 025827 155 GIRFTIN--GHSYFNLVLITNVGGAGDVVAVSIKGSK-TGWQ-ALSRNWGQNWQSNS--YLNGQALSFKVTTSDGRTVIS 228 (247)
Q Consensus 155 ni~~~v~--ss~~w~av~v~n~~g~~~I~sVei~~~~-~~W~-~m~r~~gn~W~~~~--~~~g~p~~vRvT~~~G~~v~~ 228 (247)
+|+|+|+ +|++||++++ | ++|.+|||++++ ..|+ +|+|+||++|++++ +++| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 8999998 4699997765 3 469999999986 5899 99999999999864 6787 9999999999999999
Q ss_pred ccccCCCCCCCeEEeCC-CC
Q 025827 229 NNVAPANWNFGQTYTGR-QF 247 (247)
Q Consensus 229 ~~vip~~w~~g~~Y~~~-~~ 247 (247)
+||||++|+||++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999 97
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.88 E-value=2.3e-22 Score=150.39 Aligned_cols=77 Identities=44% Similarity=0.873 Sum_probs=63.9
Q ss_pred eEEEEc--CccceEEEEEEeeCCCcceEEEEEEecC-CceeeccCCCCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025827 156 IRFTIN--GHSYFNLVLITNVGGAGDVVAVSIKGSK-TGWQALSRNWGQNWQSN-SYLNGQALSFKVTTSD-GRTVISNN 230 (247)
Q Consensus 156 i~~~v~--ss~~w~av~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~-~~~~g~p~~vRvT~~~-G~~v~~~~ 230 (247)
|+|+|+ |++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .+++ .||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence 689998 4799999999999999999999999887 56999999999999998 5555 49999999977 99999999
Q ss_pred ccC
Q 025827 231 VAP 233 (247)
Q Consensus 231 vip 233 (247)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=5.6e-19 Score=130.42 Aligned_cols=73 Identities=38% Similarity=0.802 Sum_probs=61.2
Q ss_pred EEEechhhcCCCCCCCceEEEEEcCC-CCc--ccC--CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhh
Q 025827 60 TAAVSTALFNNGLNCGACYAIKCVND-NRW--CLP--GSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIA 134 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~~V~c~~~-p~~--C~~--gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia 134 (247)
+||++..+|++|..||+||+++|... ... |.. ++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999421 122 777 8999999999998 84 699999999999999
Q ss_pred cccCCeEEEEE
Q 025827 135 QYKAGIVPVQY 145 (247)
Q Consensus 135 ~~~~G~~~i~~ 145 (247)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.08 E-value=9.8e-11 Score=91.61 Aligned_cols=60 Identities=27% Similarity=0.535 Sum_probs=44.3
Q ss_pred CCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc----ccCCeEEEEE
Q 025827 70 NGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQ----YKAGIVPVQY 145 (247)
Q Consensus 70 ~g~~CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~----~~~G~~~i~~ 145 (247)
+-..||+|++||.+.. +.+++|+|+|+|+. ++|||.+.+|++|-. ...|.+.|.|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 3468999999998753 23999999999875 589999999999953 3689999999
Q ss_pred EEeee
Q 025827 146 RRVAC 150 (247)
Q Consensus 146 ~~V~C 150 (247)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.15 E-value=1.9e-05 Score=62.92 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=46.9
Q ss_pred eEEEechh-hcCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc-
Q 025827 59 NTAAVSTA-LFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQY- 136 (247)
Q Consensus 59 ~~aA~s~~-~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~- 136 (247)
.|.+.... -| ++..||.|+|++..+ .+|.|..+|.=+ ..|+|+.+||+.|.+.
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~g-------~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYNG-------RSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEETT-------EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccC-CCCCCCCeEEEEECC-------eEEEEEEEecCC-----------------CcccchHHHHHHhcCCc
Confidence 46666553 46 457999999999932 499999999732 4599999999999863
Q ss_pred --cCCeEEEEEEEee
Q 025827 137 --KAGIVPVQYRRVA 149 (247)
Q Consensus 137 --~~G~~~i~~~~V~ 149 (247)
..|+|++++++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 5799999999997
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.88 E-value=0.00018 Score=62.34 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCC
Q 025827 28 AHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFA 107 (247)
Q Consensus 28 g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~~ 107 (247)
|.|+|||..-. | ...|.|-. +. ...|.||-.. .-.|..++|+...+ +.+|+|+|.|.+|-.
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~--y~--~~~~tAAHkt------LPlgT~V~VtNl~n-----grsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEV--YN--MKALTAAHKT------LPFNTYVKVTNLHN-----NRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCee--cC--CCcccccccc------CCCCCEEEEEECCC-----CCEEEEEEeCCCCCC--
Confidence 67999985321 0 12444322 11 1235555443 47899999999764 349999999999972
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeeccC
Q 025827 108 LSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKS 153 (247)
Q Consensus 108 ~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~~~ 153 (247)
+.--+|||+.|+++|.-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 24679999999999999999999999999987654
No 13
>PRK10672 rare lipoprotein A; Provisional
Probab=97.25 E-value=0.0042 Score=58.17 Aligned_cols=94 Identities=21% Similarity=0.152 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCC
Q 025827 27 NAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNF 106 (247)
Q Consensus 27 ~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~ 106 (247)
.|.|+|||..... ...|.|-- ++ ...|.||-.. .--|..++|+..++ +.+|+|+|.|++|-.
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge~--~~--~~~~tAAH~t------LPlps~vrVtNl~n-----grsvvVrVnDRGP~~- 141 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGER--FD--PNALTAAHPT------LPIPSYVRVTNLAN-----GRMIVVRINDRGPYG- 141 (361)
T ss_pred EEEEEEeCCccCC--CcCcCcee--ec--CCcCeeeccC------CCCCCEEEEEECCC-----CcEEEEEEeCCCCCC-
Confidence 5888888853210 01222211 11 1234555433 46788999999864 349999999999962
Q ss_pred CCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeee
Q 025827 107 ALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVAC 150 (247)
Q Consensus 107 ~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C 150 (247)
+.--+|||..|+++|.-...+.+.|+.-.|.=
T Consensus 142 ------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~~ 173 (361)
T PRK10672 142 ------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVAP 173 (361)
T ss_pred ------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeCC
Confidence 24679999999999988777888888777733
No 14
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.0013 Score=58.04 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeec
Q 025827 74 CGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACK 151 (247)
Q Consensus 74 CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~ 151 (247)
=|.-++|+..++ +.+|+|+|.|++|- . ..-.+|||..|+++|+-.+.|+.+|+.+++.+.
T Consensus 119 ~~t~v~VtNl~N-----grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN-----GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC-----CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 466799998874 34999999999995 2 346899999999999999999999999999866
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=90.16 E-value=0.3 Score=42.31 Aligned_cols=53 Identities=28% Similarity=0.293 Sum_probs=30.9
Q ss_pred EEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCH
Q 025827 60 TAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQ 127 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~ 127 (247)
+||++-.-......|++|||++=++.+ -..++.+|++++.=-+ . ..+||||..
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d---l----------g~n~FDl~i 122 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD---L----------GSNQFDLAI 122 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT---T----------TTTEEEEE-
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC---C----------CCCeEEEEe
Confidence 566652211223679999999998643 2234999999986332 1 368999975
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=75.81 E-value=5.9 Score=30.28 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=34.0
Q ss_pred eEEEEEEecCCcee----eccCCCCceEEeCCC---------CCCcceEEEEEecCCcEEE
Q 025827 180 VVAVSIKGSKTGWQ----ALSRNWGQNWQSNSY---------LNGQALSFKVTTSDGRTVI 227 (247)
Q Consensus 180 I~sVei~~~~~~W~----~m~r~~gn~W~~~~~---------~~g~p~~vRvT~~~G~~v~ 227 (247)
-++|+|.++-..|. +|+|....+|++.-+ ..+..+.+||+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 35677776545675 488877779976422 2566899999998888754
No 17
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.63 E-value=10 Score=34.97 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=49.7
Q ss_pred EEEEEEeeeccCCceEEEEc-CccceEEEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEe
Q 025827 142 PVQYRRVACKKSGGIRFTIN-GHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTT 220 (247)
Q Consensus 142 ~i~~~~V~C~~~gni~~~v~-ss~~w~av~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~ 220 (247)
.+.|+.|+ .+..+.|.+. +++.+ ...++.++|.+.+|-.+ .| .++|+|++
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS 97 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSS 97 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEE
Confidence 46777775 4457788887 56655 12233445555554332 12 79999998
Q ss_pred -cCCcEEEEcccc--CCCCCCCeEEeCCCC
Q 025827 221 -SDGRTVISNNVA--PANWNFGQTYTGRQF 247 (247)
Q Consensus 221 -~~G~~v~~~~vi--p~~w~~g~~Y~~~~~ 247 (247)
...+.|-+.+|+ =++|++-++|.+.+|
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 444578887744 488999999988755
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=55.36 E-value=26 Score=32.38 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=30.5
Q ss_pred cceEEEEEEecCC-ceeeccCCCCc-------eEEeCCCC-CC-cceEEEEEecCCcE
Q 025827 178 GDVVAVSIKGSKT-GWQALSRNWGQ-------NWQSNSYL-NG-QALSFKVTTSDGRT 225 (247)
Q Consensus 178 ~~I~sVei~~~~~-~W~~m~r~~gn-------~W~~~~~~-~g-~p~~vRvT~~~G~~ 225 (247)
..|++|||..+++ +|++..-.... .|++.-.+ .| --+.+|.+|.+|++
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 5799999998875 89877653211 45554222 22 24666778877744
No 19
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=54.40 E-value=20 Score=28.83 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=14.3
Q ss_pred ceEEEEEEecC-CceeeccCC
Q 025827 179 DVVAVSIKGSK-TGWQALSRN 198 (247)
Q Consensus 179 ~I~sVei~~~~-~~W~~m~r~ 198 (247)
+|.+|||...+ .+|++.+..
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~ 62 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLD 62 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEE
T ss_pred ceEEEEEEeCCCCCcEEeEec
Confidence 89999999876 469876643
No 20
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=46.74 E-value=1.5e+02 Score=23.79 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=40.4
Q ss_pred CceEEEEc------CccceEEEEEEeeCCCcceEEEEEEec---C--------CceeeccCCCC--ceEEeCCCCCCcce
Q 025827 154 GGIRFTIN------GHSYFNLVLITNVGGAGDVVAVSIKGS---K--------TGWQALSRNWG--QNWQSNSYLNGQAL 214 (247)
Q Consensus 154 gni~~~v~------ss~~w~av~v~n~~g~~~I~sVei~~~---~--------~~W~~m~r~~g--n~W~~~~~~~g~p~ 214 (247)
..+.+.+. +-+||.-+.|.|.+| ...++|+|.+. + .+.--+.+..- ..+.....|.+.-+
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L 112 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQL 112 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeE
Confidence 35666654 246999999999987 57899999864 1 12223333221 13333444544478
Q ss_pred EEEEEec
Q 025827 215 SFKVTTS 221 (247)
Q Consensus 215 ~vRvT~~ 221 (247)
.||+.+-
T Consensus 113 ~irv~gY 119 (122)
T TIGR02588 113 RLRVAGY 119 (122)
T ss_pred EEEEEec
Confidence 8888763
No 21
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=42.12 E-value=95 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=20.5
Q ss_pred eeccCCC-CceEEe--CCCCCCcceEEEEEecCCcEE
Q 025827 193 QALSRNW-GQNWQS--NSYLNGQALSFKVTTSDGRTV 226 (247)
Q Consensus 193 ~~m~r~~-gn~W~~--~~~~~g~p~~vRvT~~~G~~v 226 (247)
.+|.|.. ...|.. +....+..+.+|++..+|++.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677755 567874 322323368999987555543
No 22
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=40.96 E-value=15 Score=23.45 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=9.4
Q ss_pred cccCCCCCCCe
Q 025827 230 NVAPANWNFGQ 240 (247)
Q Consensus 230 ~vip~~w~~g~ 240 (247)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999985
No 23
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=38.99 E-value=65 Score=23.13 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=28.3
Q ss_pred EEEEEEecCCce--eeccCCCCceEEeCCCCCCcceEEEEEecCCcEE
Q 025827 181 VAVSIKGSKTGW--QALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTV 226 (247)
Q Consensus 181 ~sVei~~~~~~W--~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v 226 (247)
++|+|.++=..| .+|+|.....|++.-.+..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 688888864567 468887656887654333224556654 356665
No 24
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.16 E-value=23 Score=27.11 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhhhcccc
Q 025827 3 ILGYIIIALFTVFKAAVG 20 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (247)
+|++||+.||++.+.+++
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 566666676766666655
No 25
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=36.85 E-value=1.4e+02 Score=21.50 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=35.4
Q ss_pred EEEEeeCCCcceEEEEEEecCCcee---eccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025827 169 VLITNVGGAGDVVAVSIKGSKTGWQ---ALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISN 229 (247)
Q Consensus 169 v~v~n~~g~~~I~sVei~~~~~~W~---~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v~~~ 229 (247)
+.++..+ +-.+|+|.|+=.+|. +|.|..+. |...-.+..+.+.+|+.- +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 4455543 357899998756676 58887655 775444432367777653 67887654
No 26
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.37 E-value=89 Score=29.11 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCcceEEEEEEecCC-ceeeccCCC--C-c---eEEeC-CCCCC-cceEEEEEecCCcE
Q 025827 176 GAGDVVAVSIKGSKT-GWQALSRNW--G-Q---NWQSN-SYLNG-QALSFKVTTSDGRT 225 (247)
Q Consensus 176 g~~~I~sVei~~~~~-~W~~m~r~~--g-n---~W~~~-~~~~g-~p~~vRvT~~~G~~ 225 (247)
|.+.|..|||..+++ +|+...... + . .|+.. ....+ --+-+|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 345799999998875 798765431 1 1 23322 11222 24556667777743
No 27
>PRK10301 hypothetical protein; Provisional
Probab=28.45 E-value=87 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.9
Q ss_pred cccCCeEEEEEEEeeecc---CCceEEEEc
Q 025827 135 QYKAGIVPVQYRRVACKK---SGGIRFTIN 161 (247)
Q Consensus 135 ~~~~G~~~i~~~~V~C~~---~gni~~~v~ 161 (247)
.+..|.+.|+||.|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999763 568888875
No 28
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=28.09 E-value=68 Score=26.02 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=20.0
Q ss_pred ceEEEEEe-cCCcEEEEcccc--CCCCCCCeEEeCC
Q 025827 213 ALSFKVTT-SDGRTVISNNVA--PANWNFGQTYTGR 245 (247)
Q Consensus 213 p~~vRvT~-~~G~~v~~~~vi--p~~w~~g~~Y~~~ 245 (247)
+++|+|++ ...+.|-+.+|+ =++|++-++|++.
T Consensus 17 ~l~i~l~S~v~~~~vfaP~vliLD~~~~~~~~~~~~ 52 (135)
T PF07148_consen 17 SLSITLSSYVKDKSVFAPNVLILDENFQPVRTYPSS 52 (135)
T ss_pred cEEEEEEEEEcCCcEEeeeEEEECCCCCEEEEcChH
Confidence 67777776 335666666533 3666666666554
No 29
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=27.78 E-value=1.2e+02 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=12.7
Q ss_pred ceEEEEEecCCcEEEEc
Q 025827 213 ALSFKVTTSDGRTVISN 229 (247)
Q Consensus 213 p~~vRvT~~~G~~v~~~ 229 (247)
+++|+.+|++|+....+
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 78888888888877654
No 30
>PLN00177 sulfite oxidase; Provisional
Probab=26.58 E-value=1.8e+02 Score=27.90 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=18.9
Q ss_pred EEeeCCCcceEEEEEEecCC-ceeeccC
Q 025827 171 ITNVGGAGDVVAVSIKGSKT-GWQALSR 197 (247)
Q Consensus 171 v~n~~g~~~I~sVei~~~~~-~W~~m~r 197 (247)
+...+|...|++|||...++ +|+....
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeee
Confidence 44444434799999998864 7996653
No 31
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=26.00 E-value=1.2e+02 Score=28.81 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=29.3
Q ss_pred CcceEEEEEEecCC-ceeeccCC--CCc----eEEeCC-CC-CC-cceEEEEEecCCcE
Q 025827 177 AGDVVAVSIKGSKT-GWQALSRN--WGQ----NWQSNS-YL-NG-QALSFKVTTSDGRT 225 (247)
Q Consensus 177 ~~~I~sVei~~~~~-~W~~m~r~--~gn----~W~~~~-~~-~g-~p~~vRvT~~~G~~ 225 (247)
...|++|||...++ +|+...-. .+. .|++.- .. .| --+.+|-||..|++
T Consensus 287 ~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 287 GSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 35799999998864 79866532 222 355531 22 23 24566667877743
No 32
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=25.82 E-value=1.8e+02 Score=27.45 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.0
Q ss_pred EEeeCCCcceEEEEEEecCC-ceeeccC
Q 025827 171 ITNVGGAGDVVAVSIKGSKT-GWQALSR 197 (247)
Q Consensus 171 v~n~~g~~~I~sVei~~~~~-~W~~m~r 197 (247)
+...+|...|++|||...++ +|+...-
T Consensus 269 ~A~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 269 YAWSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred EEECCCCCcEEEEEEECCCCCcceeCCc
Confidence 34444445799999998874 7987654
No 33
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=24.70 E-value=4.2e+02 Score=23.20 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=12.6
Q ss_pred ceEEEEEecCCcEEEE
Q 025827 213 ALSFKVTTSDGRTVIS 228 (247)
Q Consensus 213 p~~vRvT~~~G~~v~~ 228 (247)
+++|+|++.+|.++..
T Consensus 131 ~v~I~V~~P~G~~~t~ 146 (209)
T PF12863_consen 131 PVDIKVTTPSGATYTS 146 (209)
T ss_pred eEEEEEeCCCCcEEEE
Confidence 5999999888877653
No 34
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.48 E-value=2.8e+02 Score=20.44 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=21.0
Q ss_pred eeccCCCCceEEeC--CCCCCcceEEEEEecCCcE
Q 025827 193 QALSRNWGQNWQSN--SYLNGQALSFKVTTSDGRT 225 (247)
Q Consensus 193 ~~m~r~~gn~W~~~--~~~~g~p~~vRvT~~~G~~ 225 (247)
.+|.|..+.+|.+. ..+.+.-+.+||...+++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 36777777788753 3344556888887654433
No 35
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.02 E-value=1.1e+02 Score=24.66 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.0
Q ss_pred cccCCeEEEEEEEeeecc---CCceEEEEc
Q 025827 135 QYKAGIVPVQYRRVACKK---SGGIRFTIN 161 (247)
Q Consensus 135 ~~~~G~~~i~~~~V~C~~---~gni~~~v~ 161 (247)
++..|.+.++||.|+=+- .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 457999999999999884 568999886
No 36
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.46 E-value=2e+02 Score=20.18 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=22.8
Q ss_pred eecc-CCCCceEEeC--CCCC-C-cceEEEEEecCCcEEE
Q 025827 193 QALS-RNWGQNWQSN--SYLN-G-QALSFKVTTSDGRTVI 227 (247)
Q Consensus 193 ~~m~-r~~gn~W~~~--~~~~-g-~p~~vRvT~~~G~~v~ 227 (247)
.+|+ +....+|++. ..+. + .-+.+||+..+|++..
T Consensus 40 ~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 40 YPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp EEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred EEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 4677 4667788754 2344 3 3789999998875443
No 37
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.34 E-value=97 Score=23.16 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=18.4
Q ss_pred ccCCeEEEEEEEeeecc---CCceEEEEc
Q 025827 136 YKAGIVPVQYRRVACKK---SGGIRFTIN 161 (247)
Q Consensus 136 ~~~G~~~i~~~~V~C~~---~gni~~~v~ 161 (247)
+..|.+.|+||.|+=+- .|.+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 57899999999999542 346788775
No 38
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.39 E-value=1.3e+02 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=20.6
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCe
Q 025827 213 ALSFKVTTSDGR-TVISNNVAPANWNFGQ 240 (247)
Q Consensus 213 p~~vRvT~~~G~-~v~~~~vip~~w~~g~ 240 (247)
.++|+|||...+ .|.++.++|..|+.|.
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 478888886553 4556789999998775
Done!