Query 025828
Match_columns 247
No_of_seqs 120 out of 444
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.4E-93 5.2E-98 599.4 16.4 235 4-241 3-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.3E-90 2.8E-95 611.4 24.4 236 6-243 1-237 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 3E-86 6.6E-91 583.0 23.0 235 6-243 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 2E-81 4.4E-86 541.4 20.2 237 5-244 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.4 0.008 1.7E-07 42.8 5.1 55 150-206 21-75 (78)
6 KOG1840 Kinesin light chain [C 93.2 9.5 0.00021 37.7 18.4 189 7-210 200-400 (508)
7 TIGR00990 3a0801s09 mitochondr 92.7 4 8.7E-05 40.5 14.8 54 150-205 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.7 1.7 3.6E-05 32.6 7.5 59 151-210 15-74 (94)
9 TIGR00990 3a0801s09 mitochondr 86.5 36 0.00078 33.7 16.3 74 150-232 524-597 (615)
10 PF13414 TPR_11: TPR repeat; P 84.6 4.8 0.0001 27.3 6.3 47 150-205 19-66 (69)
11 PF04781 DUF627: Protein of un 83.4 2.5 5.3E-05 33.3 4.7 58 106-164 16-74 (111)
12 PF13374 TPR_10: Tetratricopep 81.3 1.5 3.3E-05 26.6 2.4 24 150-173 18-41 (42)
13 PF12569 NARP1: NMDA receptor- 77.9 76 0.0017 31.4 17.9 60 145-205 157-222 (517)
14 KOG4162 Predicted calmodulin-b 72.4 1.3E+02 0.0028 31.4 14.6 166 18-206 335-507 (799)
15 PF13174 TPR_6: Tetratricopept 70.6 9.8 0.00021 21.6 3.8 27 8-34 2-28 (33)
16 PF13431 TPR_17: Tetratricopep 70.4 4.3 9.3E-05 24.6 2.2 34 156-198 1-34 (34)
17 PRK09782 bacteriophage N4 rece 69.6 1.6E+02 0.0036 31.5 15.2 26 9-34 512-537 (987)
18 PF07719 TPR_2: Tetratricopept 69.4 11 0.00023 21.7 3.8 26 9-34 4-29 (34)
19 TIGR02917 PEP_TPR_lipo putativ 69.2 1.2E+02 0.0027 29.9 15.2 27 8-34 705-731 (899)
20 PF13424 TPR_12: Tetratricopep 68.9 28 0.00062 24.0 6.6 37 172-210 1-37 (78)
21 TIGR02521 type_IV_pilW type IV 66.9 64 0.0014 25.8 16.6 166 7-206 32-198 (234)
22 CHL00033 ycf3 photosystem I as 61.6 71 0.0015 25.7 8.6 70 150-228 88-163 (168)
23 PF13371 TPR_9: Tetratricopept 61.1 37 0.00081 23.0 5.9 45 151-204 12-56 (73)
24 PF13181 TPR_8: Tetratricopept 61.0 20 0.00044 20.6 3.9 27 8-34 3-29 (34)
25 PF13428 TPR_14: Tetratricopep 60.9 19 0.00042 22.5 4.1 27 8-34 3-29 (44)
26 PF01765 RRF: Ribosome recycli 60.5 47 0.001 27.5 7.3 72 40-112 85-156 (165)
27 KOG1840 Kinesin light chain [C 56.8 2.1E+02 0.0046 28.4 18.4 186 9-217 286-490 (508)
28 PF14559 TPR_19: Tetratricopep 56.1 54 0.0012 21.8 6.0 44 151-203 8-51 (68)
29 PF13176 TPR_7: Tetratricopept 56.0 23 0.0005 21.3 3.6 25 9-33 2-26 (36)
30 PF00515 TPR_1: Tetratricopept 55.5 24 0.00051 20.4 3.6 26 9-34 4-29 (34)
31 COG0233 Frr Ribosome recycling 54.4 60 0.0013 27.9 7.0 74 39-113 104-177 (187)
32 PRK15363 pathogenicity island 53.6 91 0.002 26.0 7.8 73 146-231 81-155 (157)
33 CHL00033 ycf3 photosystem I as 51.5 57 0.0012 26.3 6.4 50 150-205 51-100 (168)
34 PF06552 TOM20_plant: Plant sp 50.7 69 0.0015 27.5 6.8 80 136-225 37-122 (186)
35 KOG4759 Ribosome recycling fac 50.5 74 0.0016 28.8 7.2 71 40-113 183-253 (263)
36 PRK12794 flaF flagellar biosyn 48.3 26 0.00056 27.9 3.7 53 186-238 8-60 (122)
37 TIGR02795 tol_pal_ybgF tol-pal 46.3 89 0.0019 22.6 6.3 50 151-206 56-105 (119)
38 COG3947 Response regulator con 45.2 35 0.00076 31.7 4.4 50 183-238 286-335 (361)
39 PRK14720 transcript cleavage f 44.6 44 0.00095 35.4 5.6 79 120-208 99-180 (906)
40 cd00520 RRF Ribosome recycling 44.1 90 0.002 26.3 6.6 74 39-113 98-171 (179)
41 TIGR00496 frr ribosome recycli 44.1 1.1E+02 0.0025 25.8 7.2 74 39-113 93-166 (176)
42 PRK00083 frr ribosome recyclin 43.3 1.1E+02 0.0024 26.1 7.0 74 39-113 102-175 (185)
43 PF12895 Apc3: Anaphase-promot 43.2 42 0.00092 23.7 3.9 44 156-202 40-83 (84)
44 PRK02603 photosystem I assembl 43.0 98 0.0021 25.0 6.6 49 151-205 52-100 (172)
45 PF03755 YicC_N: YicC-like fam 42.8 49 0.0011 27.2 4.7 62 152-213 82-147 (159)
46 PRK12793 flaF flagellar biosyn 41.0 35 0.00076 26.9 3.4 52 186-238 6-58 (115)
47 PF12688 TPR_5: Tetratrico pep 39.7 1.5E+02 0.0032 23.3 6.8 51 150-206 17-67 (120)
48 TIGR02917 PEP_TPR_lipo putativ 38.9 3.9E+02 0.0086 26.3 17.1 27 8-34 603-629 (899)
49 COG4499 Predicted membrane pro 38.6 62 0.0013 31.0 5.1 48 175-222 230-282 (434)
50 cd05804 StaR_like StaR_like; a 37.9 2.9E+02 0.0063 24.5 12.6 27 176-203 186-212 (355)
51 PF13414 TPR_11: TPR repeat; P 35.7 1.3E+02 0.0029 19.9 6.7 46 7-56 4-49 (69)
52 PF10083 DUF2321: Uncharacteri 35.2 2.4E+02 0.0053 23.6 7.5 34 24-60 83-116 (158)
53 smart00028 TPR Tetratricopepti 34.3 69 0.0015 16.3 3.8 26 9-34 4-29 (34)
54 PF13432 TPR_16: Tetratricopep 33.8 1.4E+02 0.003 19.6 6.7 53 11-68 2-54 (65)
55 PLN03088 SGT1, suppressor of 33.6 1.1E+02 0.0023 28.5 5.9 46 151-205 19-64 (356)
56 PF08424 NRDE-2: NRDE-2, neces 31.9 2.8E+02 0.0061 25.3 8.4 88 150-244 118-215 (321)
57 PF03635 Vps35: Vacuolar prote 31.6 5E+02 0.011 27.1 10.8 40 150-189 701-741 (762)
58 PF14559 TPR_19: Tetratricopep 31.5 67 0.0015 21.3 3.3 53 18-75 3-55 (68)
59 PRK15331 chaperone protein Sic 31.0 2.3E+02 0.0049 23.9 6.8 73 147-234 84-156 (165)
60 PF12895 Apc3: Anaphase-promot 30.9 86 0.0019 22.0 3.9 23 9-31 61-83 (84)
61 PRK15359 type III secretion sy 30.7 1.5E+02 0.0033 23.4 5.7 47 150-205 74-120 (144)
62 PRK10370 formate-dependent nit 29.8 1.4E+02 0.0031 25.2 5.6 46 151-204 90-137 (198)
63 PRK02603 photosystem I assembl 29.3 3E+02 0.0065 22.1 8.2 69 151-228 89-163 (172)
64 KOG2002 TPR-containing nuclear 29.0 1.2E+02 0.0026 32.4 5.7 52 155-210 250-303 (1018)
65 PF05010 TACC: Transforming ac 28.0 4.1E+02 0.0088 23.1 8.2 84 11-110 123-206 (207)
66 KOG1126 DNA-binding cell divis 26.7 91 0.002 31.7 4.3 67 129-204 484-550 (638)
67 PF13371 TPR_9: Tetratricopept 26.7 1.3E+02 0.0027 20.2 4.0 57 13-74 2-58 (73)
68 PF08717 nsp8: nsp8 replicase; 26.3 56 0.0012 28.1 2.4 40 149-208 14-53 (199)
69 TIGR03504 FimV_Cterm FimV C-te 25.9 1.2E+02 0.0025 19.7 3.4 40 10-51 3-42 (44)
70 PF02259 FAT: FAT domain; Int 25.2 4.8E+02 0.01 23.0 12.5 28 7-34 147-174 (352)
71 KOG0570 Transcriptional coacti 24.8 3.3E+02 0.0073 23.8 6.8 26 45-70 109-139 (223)
72 KOG0553 TPR repeat-containing 24.7 2E+02 0.0043 26.6 5.8 29 26-58 11-39 (304)
73 PRK15326 type III secretion sy 24.7 1.2E+02 0.0025 22.5 3.6 36 150-187 20-59 (80)
74 PF08631 SPO22: Meiosis protei 24.6 4.9E+02 0.011 23.0 9.0 89 150-239 9-100 (278)
75 PF09986 DUF2225: Uncharacteri 24.0 4.7E+02 0.01 22.5 8.3 60 149-210 92-154 (214)
76 PRK11788 tetratricopeptide rep 23.9 5.3E+02 0.012 23.1 16.1 23 11-33 74-96 (389)
77 PF07309 FlaF: Flagellar prote 23.7 91 0.002 24.4 3.1 48 190-238 10-57 (113)
78 PF10516 SHNi-TPR: SHNi-TPR; 23.6 78 0.0017 19.9 2.2 37 132-171 2-38 (38)
79 KOG0547 Translocase of outer m 23.3 98 0.0021 30.8 3.7 40 151-205 132-177 (606)
80 PF14490 HHH_4: Helix-hairpin- 23.2 1.1E+02 0.0024 22.7 3.4 48 127-186 38-86 (94)
81 PF14689 SPOB_a: Sensor_kinase 22.5 1.7E+02 0.0036 20.1 3.9 23 12-34 29-51 (62)
82 PRK11447 cellulose synthase su 22.5 1E+03 0.022 25.8 17.6 27 8-34 114-140 (1157)
83 COG3063 PilF Tfp pilus assembl 22.3 1.3E+02 0.0028 27.0 4.0 47 150-205 85-131 (250)
84 KOG0687 26S proteasome regulat 22.1 4.2E+02 0.0092 25.1 7.4 77 130-209 53-136 (393)
85 PHA02103 hypothetical protein 21.8 26 0.00056 27.5 -0.4 15 130-144 78-92 (135)
86 PRK11447 cellulose synthase su 21.6 1E+03 0.023 25.7 14.9 56 11-71 356-411 (1157)
87 PRK11820 hypothetical protein; 20.9 2.1E+02 0.0045 26.1 5.3 60 154-214 85-145 (288)
88 cd05804 StaR_like StaR_like; a 20.8 5.9E+02 0.013 22.5 12.4 30 5-34 42-71 (355)
89 PF12083 DUF3560: Domain of un 20.4 1.3E+02 0.0029 24.1 3.4 29 148-177 20-48 (126)
90 KOG4626 O-linked N-acetylgluco 20.4 1.7E+02 0.0038 30.2 4.9 58 148-214 402-465 (966)
91 PRK10370 formate-dependent nit 20.4 3E+02 0.0066 23.1 5.9 60 6-70 107-169 (198)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-93 Score=599.37 Aligned_cols=235 Identities=71% Similarity=1.100 Sum_probs=229.9
Q ss_pred CcHHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhh
Q 025828 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (247)
Q Consensus 4 ~~re~~~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~ 83 (247)
..||+.+|+|+|++||+||++|++.||.++. .+ .+|+.+|||||||||||+||.||+|||++++++||++++++..+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas--~~-~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~q 79 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVAS--SG-QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQ 79 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhH
Confidence 3599999999999999999999999999997 54 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHH
Q 025828 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (247)
Q Consensus 84 ~~~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (247)
+.+|+.||++|++||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++
T Consensus 80 v~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Asei 159 (268)
T COG5040 80 VELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEI 159 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccc
Q 025828 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQ 241 (247)
Q Consensus 164 a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~e~~ 241 (247)
|...||||||||||||||||||||||++++++||.|||+|||+||++||+|+||+|+|+|+||||||||||+|+++.+
T Consensus 160 A~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 160 ATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.3e-90 Score=611.37 Aligned_cols=236 Identities=78% Similarity=1.174 Sum_probs=227.6
Q ss_pred HHhHHHHHHHHHHhcChHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhh
Q 025828 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (247)
Q Consensus 6 re~~~~~Aklaeq~ery~dm~~~mk~ii~~~~-~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 84 (247)
|++++|+|||++|||||+||+.+||++++ + ++.+||.||||||||||||+||++|+|||+|++++++++.+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 68999999999999999999999999998 5 32599999999999999999999999999999999998878877788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHH
Q 025828 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (247)
Q Consensus 85 ~~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (247)
+.++.||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccccc
Q 025828 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQ 243 (247)
Q Consensus 165 ~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~e~~~~ 243 (247)
+++||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+++|||||||||++|+++++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~ 237 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDD 237 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 9899999999999999999999999999999999999999999999999999999999999999999999999985544
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=3e-86 Score=583.03 Aligned_cols=235 Identities=69% Similarity=1.072 Sum_probs=222.8
Q ss_pred HHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhH
Q 025828 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (247)
Q Consensus 6 re~~~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 85 (247)
|++++|||||++|||||+||+++||++++ ++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--MN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--TS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--cC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999999 65 9999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025828 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (247)
Q Consensus 86 ~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (247)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccccc
Q 025828 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQ 243 (247)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~e~~~~ 243 (247)
.+||||||+||||+||||||||||+|++++||+||++||++|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-81 Score=541.41 Aligned_cols=237 Identities=73% Similarity=1.100 Sum_probs=230.9
Q ss_pred cHHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhh
Q 025828 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (247)
Q Consensus 5 ~re~~~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 84 (247)
+|+++|++|++++|++||+||+.+||.+++ .+ .+||.+|||||||+|||+||++|++||+|++|+||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~--~~-~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE--LD-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc--cc-hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 66 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchhhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHH
Q 025828 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (247)
Q Consensus 85 ~~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (247)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||++||.+|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccccc
Q 025828 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQ 243 (247)
Q Consensus 164 a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~e~~~~ 243 (247)
++..|+||||+||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred c
Q 025828 244 I 244 (247)
Q Consensus 244 ~ 244 (247)
.
T Consensus 238 ~ 238 (247)
T KOG0841|consen 238 E 238 (247)
T ss_pred c
Confidence 3
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.38 E-value=0.008 Score=42.83 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (247)
-++|.+.|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36799999999999 567899988888888888888777 79999999999998763
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.19 E-value=9.5 Score=37.66 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhcc--C-CCCCCCH-HHHHHHHHHHhhhhhhhhhHHHHHHH-Hhhhhhhcch-
Q 025828 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSS--T-PATELTV-EERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKN- 80 (247)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~ii~~~--~-~~~~L~~-eERnLls~ayKn~i~~~R~s~R~l~~-ieqk~~~~~~- 80 (247)
..+.++|.+..+.|+|+.++...|+.+++- . +...+-. .-.+-|++.|-+. +..+.|..++.. +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345678888889999999999999887531 0 1012222 2344466666543 445666666642 3334443442
Q ss_pred -hhhhHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHHHHHHH
Q 025828 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (247)
Q Consensus 81 -~~~~~~i~~-----yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (247)
+.....+.+ ++.-=-.|-...|..+++|..+.+. ...++-..- +.++..-.....-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333333332 2222336778899999999988333 322332221 122222222223367889
Q ss_pred HHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025828 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (247)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (247)
..|+.|+++....+++-||.-=|.--|+++-|+- +|..++|.++.++|+...-+.
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 9999999999888999999999999999999886 799999999999998877553
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.73 E-value=4 Score=40.48 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
.+.|...|++|+++.. ..++.++..++ .++.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4667778888876643 23333332222 345555566666788888777766643
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.68 E-value=1.7 Score=32.55 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHh-hhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~-LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (247)
..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777776654555544 788887776 699999999999998888764
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.49 E-value=36 Score=33.73 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLL 229 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlL 229 (247)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|.+-+-+.-+-+.--++.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777765 3555553 22333444444 8999999998888776654322222223566666664444
Q ss_pred Hhh
Q 025828 230 RDN 232 (247)
Q Consensus 230 rdN 232 (247)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 444
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.63 E-value=4.8 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhC-CHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQAFE 205 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~-~~~~A~~iak~afd 205 (247)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 46789999999975 24445577888888776 57 79999998888764
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.38 E-value=2.5 Score=33.33 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHhhhccCCCCCCCchhhHHhhhccccccchhhccc-chhHHHHHHHHHHHHHHHHHHH
Q 025828 106 LKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIA 164 (247)
Q Consensus 106 i~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a 164 (247)
+.||...+..... .++..|-+...|+.+..+|.... .+.+....-.|.+||.+|..++
T Consensus 16 L~iied~i~~h~~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHGE-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHccC-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3444444433322 22333888899999999998766 5567788899999999997644
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.35 E-value=1.5 Score=26.55 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHP 173 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p 173 (247)
.+.|...|++|+.+.+..++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 367899999999999988999998
No 13
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=77.90 E-value=76 Score=31.41 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC------CCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 145 ERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 145 ~~~~~~~~a~~aY~~A~~~a~~~L~------pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
.+..+++.-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455566666666666554332 233 235777888888988899999999999998887755
No 14
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=72.37 E-value=1.3e+02 Score=31.36 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=89.4
Q ss_pred HhcChHHHHHHHHHHhhccCCCCCCCHHHH-HHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHH----
Q 025828 18 QAERYEEMVKFMDSLVTSSTPATELTVEER-NLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRS---- 92 (247)
Q Consensus 18 q~ery~dm~~~mk~ii~~~~~~~~L~~eER-nLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~---- 92 (247)
.+|+|....+++.+.+. .-+..-|| +.++.+|-. .++--.+.+.+..--.+.+. -+....++--++.
T Consensus 335 ~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~~--ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSEQ--PSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhcccccC--CCcchHHHHHHHHHHhc
Confidence 35777777777777653 33443343 344444432 22333444444322111110 0111112222222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhccc-chhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025828 93 -KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAP 170 (247)
Q Consensus 93 -ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~p 170 (247)
+.-+|..++...++++... .. ..-+---+++-|=-|-..|--.+ .++|.....++.++|++|.+ +.|
T Consensus 407 l~~~eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~ 475 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDP 475 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 2235666666666654311 11 11122234566766766665444 67788889999999999975 678
Q ss_pred CCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025828 171 THPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (247)
Q Consensus 171 t~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (247)
+|| -...+.|++|-+ .++.+.|...++.++.-
T Consensus 476 ~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 476 TDP---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred CCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 999 234555666554 68888888888876553
No 15
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.57 E-value=9.8 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999996
No 16
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.39 E-value=4.3 Score=24.61 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHH
Q 025828 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (247)
Q Consensus 156 aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~ 198 (247)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 4677775 345554 456788998886 699999863
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.62 E-value=1.6e+02 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44556666677777777777776653
No 18
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=69.36 E-value=11 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=69.16 E-value=1.2e+02 Score=29.89 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
-...++.+....|+|++++..+++.+.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677888888888888888888876
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.91 E-value=28 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.0
Q ss_pred CcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025828 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (247)
Q Consensus 172 ~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (247)
||.......|.+..|++ +|+.++|+...++|++- ...
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHH
Confidence 78888888999998886 79999999999999887 544
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=66.87 E-value=64 Score=25.78 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHH
Q 025828 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSL 86 (247)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 86 (247)
.-...++...-..|+|++++..+++.++ .. | -+..-...++..|-.. +....+...+........... ......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p-~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~-~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--HD-P-DDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG-DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 3456778888888999999999999986 32 3 3444445555555433 444444444433222211110 011111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025828 87 VKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (247)
Q Consensus 87 i~~y-k~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (247)
..-| ...=-++-...+..++.. |.. .....+.+ . .|..|. ..++ .+.|...|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~-~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARSLE-N-AGLCAL-----KAGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHHHH-H-HHHHHH-----HcCC-----HHHHHHHHHHHHHh--
Confidence 1111 111112233334444321 110 01111111 1 232221 1111 35678888887753
Q ss_pred hcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025828 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (247)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (247)
.|.+| ....+.+..++. .|+.++|+...+++.+.
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 33333 344456666665 79999999887776553
No 22
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=61.63 E-value=71 Score=25.69 Aligned_cols=70 Identities=19% Similarity=0.054 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHH------HHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQAFEEAIAELDTLGEESYKDST 223 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~y------ei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~ 223 (247)
.+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.---. .-.++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHH
Confidence 35688889888865 3333 233445555554 2478998888777766543222 2234555666666
Q ss_pred HHHHH
Q 025828 224 LIMQL 228 (247)
Q Consensus 224 ~ilql 228 (247)
.-|..
T Consensus 159 ~~~~~ 163 (168)
T CHL00033 159 NWLKI 163 (168)
T ss_pred HHHHH
Confidence 55543
No 23
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=61.08 E-value=37 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~af 204 (247)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4456666666543 45566677778888887 799999988777666
No 24
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.02 E-value=20 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 25
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=60.94 E-value=19 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
-...+|+...+.|+++++++.++++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 26
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=60.46 E-value=47 Score=27.53 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025828 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (247)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~ 112 (247)
|.+|.|-|.-+....|......|.+.|.+..-..+.- ++.......-++-.++++++|..+-+..+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999865332221 11101101334555667777777777777766654
No 27
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=56.77 E-value=2.1e+02 Score=28.36 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHH---------HhhhhhhhhhHHHHHHHHhhhhhhc
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSVA---------YKNVIGSLRAAWRIISSIEQKEEGR 78 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii~~~~-~~~~L~~eERnLls~a---------yKn~i~~~R~s~R~l~~ieqk~~~~ 78 (247)
+.-+|.+.-..|+|+++-.+++..++++. .-+...++--..|+.. |-..+.=.+.+.+++. ...+ .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g-~ 361 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG-E 361 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-c
Confidence 45677778888999999999999887541 0022333322222221 2223333333333332 1111 1
Q ss_pred chhhhhHHHHHHHHHH---------HHHHHHHHHHHHHHhhhccCCCCCCCchhhHHhhhccccccchhhcccchhHHHH
Q 025828 79 KNEEHVSLVKDYRSKV---------ESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAA 149 (247)
Q Consensus 79 ~~~~~~~~i~~yk~ki---------~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~ 149 (247)
.+ ..+..++..+ -+|=..+-..+|.+.....=. .+...-.+++.|-.+|+|- +-
T Consensus 362 ~~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~-----------k~ 424 (508)
T KOG1840|consen 362 DN----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEEL-----------KK 424 (508)
T ss_pred cc----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHh-----------cc
Confidence 11 0111122222 134455566666666544321 2234456777776666432 12
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCC
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEE 217 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee 217 (247)
...|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 455788999999999 78999999999999999986 5668999999999999886555555555543
No 28
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.05 E-value=54 Score=21.77 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~a 203 (247)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+..++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 5677777777653 34455566667777777 59999988876654
No 29
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=55.97 E-value=23 Score=21.30 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHh
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLV 33 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii 33 (247)
+..+|.+..+.|.|+.++++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999999855
No 30
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=55.53 E-value=24 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45688889999999999999999997
No 31
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=54.37 E-value=60 Score=27.91 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025828 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (247)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 113 (247)
.|+||.|-|.=|..-.|...-..|-|.|.+.-=... ..+....-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999988521111 11111111113356666777888888888887777654
No 32
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=53.57 E-value=91 Score=26.00 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCC--chHhHH
Q 025828 146 RKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEE--SYKDST 223 (247)
Q Consensus 146 ~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee--~~~d~~ 223 (247)
...--+.|.++|..|.. |.|.||. ...|.++-+.- +|+.+.|+ ++|+.|+..-+..++. -..-+.
T Consensus 81 ~~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHH
Confidence 33445778899998875 4456653 24555555554 68888775 5777777765433332 122355
Q ss_pred HHHHHHHh
Q 025828 224 LIMQLLRD 231 (247)
Q Consensus 224 ~ilqlLrd 231 (247)
..+..|.|
T Consensus 148 ~~L~~l~~ 155 (157)
T PRK15363 148 KMLQQLSD 155 (157)
T ss_pred HHHHHhhc
Confidence 56666554
No 33
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=51.48 E-value=57 Score=26.26 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
.+.|...|++|+.+. |.++.......|.++.+.. +|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 457888899888763 2333333455666665554 7999999998888774
No 34
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.74 E-value=69 Score=27.51 Aligned_cols=80 Identities=29% Similarity=0.387 Sum_probs=47.1
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chhhHhhhHHHHHHHHhCCHHHH---HHHHHHHHHHHHH
Q 025828 136 YLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHP---IRLGLALNFSVFYYEILNSSEKA---CTMAKQAFEEAIA 209 (247)
Q Consensus 136 YlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---~rLgL~LN~SVF~yei~~~~~~A---~~iak~afd~a~~ 209 (247)
-++-|..+.+.+++.+.|..-|++|+.+- |..+ .-||.|+--=-|+. .+..+| .+.|...|+.|.+
T Consensus 37 ELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 37 ELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHh
Confidence 35667788888889999999999998753 2222 34565555444433 455455 4566667888876
Q ss_pred hhcccCCCchHhHHHH
Q 025828 210 ELDTLGEESYKDSTLI 225 (247)
Q Consensus 210 ~ld~l~ee~~~d~~~i 225 (247)
. +-+.+.|+-+..+
T Consensus 109 ~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 109 E--DPNNELYRKSLEM 122 (186)
T ss_dssp H---TT-HHHHHHHHH
T ss_pred c--CCCcHHHHHHHHH
Confidence 4 2344567766543
No 35
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=50.51 E-value=74 Score=28.75 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025828 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (247)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 113 (247)
|+.|.|-|.-|+...+.+....|.|+|-+..=.-+...+... ..-.+--.+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558899999999999999999999999986432222211111 02244556778888888888888887655
No 36
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=48.35 E-value=26 Score=27.93 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 025828 186 YYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (247)
Q Consensus 186 ~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~ 238 (247)
|-++......+.++=.++|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555566666677788888777766554333346777999999999994
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=46.30 E-value=89 Score=22.58 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (247)
+.|.+.|+.+.. +.|.||......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 557777777764 346776555555666655554 79999999887776655
No 38
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.15 E-value=35 Score=31.71 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 025828 183 SVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (247)
Q Consensus 183 SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~ 238 (247)
+-.|-+ .|.+..|+++.+.++. +|.|+|++++.-+.++-.++||+..=.+
T Consensus 286 a~~yle-~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 286 ARAYLE-AGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHH-cCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 334444 6999999999998754 7889999999999999999999986554
No 39
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=44.64 E-value=44 Score=35.42 Aligned_cols=79 Identities=15% Similarity=-0.019 Sum_probs=49.8
Q ss_pred CchhhHHhhhccccccch-hhcccch--hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHH
Q 025828 120 GESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (247)
Q Consensus 120 ~eskvfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A 196 (247)
.....||++..|||+.-. |-+.-+. ++-.-.++|..+|+++++ +.|.||. +||+=-|+|.-. +.++|
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-hHHHH
Confidence 344556666677765432 2222111 112235678889998885 3477774 666655666656 99999
Q ss_pred HHHHHHHHHHHH
Q 025828 197 CTMAKQAFEEAI 208 (247)
Q Consensus 197 ~~iak~afd~a~ 208 (247)
.+++++|+.--+
T Consensus 169 ~~m~~KAV~~~i 180 (906)
T PRK14720 169 ITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHH
Confidence 999999977644
No 40
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=44.13 E-value=90 Score=26.33 Aligned_cols=74 Identities=24% Similarity=0.257 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025828 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (247)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 113 (247)
.|++|.|-|.=|....|...-..|.+.|.+..--.+.- ++.......-++-.++.++++..+-++.+.-||..+
T Consensus 98 iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 98 LPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999888853211110 000000011234444556666666666666666543
No 41
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=44.06 E-value=1.1e+02 Score=25.75 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025828 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (247)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 113 (247)
.|+||.|-|.=|....|...-..|.+.|.+..---+.- +........-++-.+++++++..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999988853111110 000000012244555566666666666666666543
No 42
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=43.32 E-value=1.1e+02 Score=26.09 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025828 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (247)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 113 (247)
.|+||.|-|.=|....|...-.-|.+.|.+..--.+.- ++....-..-++-.++.++|+..+-++.+.-||..+
T Consensus 102 iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 102 IPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999989999988853211111 000000011234445566666666666666666543
No 43
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=43.18 E-value=42 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHH
Q 025828 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (247)
Q Consensus 156 aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~ 202 (247)
-|++|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 34445555533 3333333343443333333 36777777765444
No 44
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=43.01 E-value=98 Score=25.04 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 567888888887642 222223345666666665 7999999998877766
No 45
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=42.82 E-value=49 Score=27.17 Aligned_cols=62 Identities=26% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhHhhhH-HHHH-HHH--hCCHHHHHHHHHHHHHHHHHhhcc
Q 025828 152 NTMLSYKAAQDIALTDLAPTHPIRLGLALNF-SVFY-YEI--LNSSEKACTMAKQAFEEAIAELDT 213 (247)
Q Consensus 152 ~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~-SVF~-yei--~~~~~~A~~iak~afd~a~~~ld~ 213 (247)
....+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|++.+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667888889999999999 5665 221 112233457788999999987664
No 46
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=41.00 E-value=35 Score=26.95 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=41.6
Q ss_pred HHHHhCCHH-HHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 025828 186 YYEILNSSE-KACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (247)
Q Consensus 186 ~yei~~~~~-~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~ 238 (247)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 666777666 7788888899999988877666544 677888999999999994
No 47
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.66 E-value=1.5e+02 Score=23.34 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (247)
-+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|..+-++++.+
T Consensus 17 ~~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 17 EEEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 36788999999752 344 4555556666655554 589999999999887654
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=38.86 E-value=3.9e+02 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
-...++.+..+.|+|++++..++++++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666666666665
No 49
>COG4499 Predicted membrane protein [Function unknown]
Probab=38.60 E-value=62 Score=31.01 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=40.3
Q ss_pred hhhHhhhHHHHHHHHhCCHHHHHHHHHHHH-----HHHHHhhcccCCCchHhH
Q 025828 175 RLGLALNFSVFYYEILNSSEKACTMAKQAF-----EEAIAELDTLGEESYKDS 222 (247)
Q Consensus 175 rLgL~LN~SVF~yei~~~~~~A~~iak~af-----d~a~~~ld~l~ee~~~d~ 222 (247)
-|-+++=|.+|+|-+....+.||.-|.+|| ++.++.++.++.++.+.+
T Consensus 230 llvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 230 LLVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 344678899999999999999999999995 789999998887765554
No 50
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=37.86 E-value=2.9e+02 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=16.8
Q ss_pred hhHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 025828 176 LGLALNFSVFYYEILNSSEKACTMAKQA 203 (247)
Q Consensus 176 LgL~LN~SVF~yei~~~~~~A~~iak~a 203 (247)
.....+.+.++.. .|+.++|+.+..++
T Consensus 186 ~~~~~~la~~~~~-~G~~~~A~~~~~~~ 212 (355)
T cd05804 186 GHNWWHLALFYLE-RGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3344455655444 67777777777666
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=35.68 E-value=1.3e+02 Score=19.88 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhh
Q 025828 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKN 56 (247)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn 56 (247)
+.+..+|.++-+.|+|++++.++++.++ .+ |. +..=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~-p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LD-PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CC-CHHHHHHHHHHHHH
Confidence 3566789999999999999999999998 43 33 34433444444433
No 52
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.16 E-value=2.4e+02 Score=23.55 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhh
Q 025828 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS 60 (247)
Q Consensus 24 dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~ 60 (247)
..++..+++++ .. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~e--e~-eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIE--ED-EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHH--Hh-hcCCHHHHHHHHhhhHHHhhc
Confidence 45677778887 33 899999999999999988753
No 53
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.26 E-value=69 Score=16.26 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
+..++.+..+.++|++++..+.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998886
No 54
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=33.76 E-value=1.4e+02 Score=19.59 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 025828 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRII 68 (247)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l 68 (247)
-+|...-+.|+|++++..+++++. . .+-+.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--Q--DPDNPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--C--STTHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--H--CCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 467888899999999999999997 3 2335666666666554 334444444444
No 55
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.59 E-value=1.1e+02 Score=28.50 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
+.|.+.|.+|+.+. |-...+.+|.+..|.. +|+.+.|+..+.+|++
T Consensus 19 ~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDLD--------PNNAELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 56
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.93 E-value=2.8e+02 Score=25.26 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCch
Q 025828 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESY 219 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~ 219 (247)
+....+.|.+++...... .+.+.-..|-+.+++++|..+ .|.++.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 344566677766655432 233456888999999999998 699999999999988877643333333221
Q ss_pred HhHHHHHHHHHhhHhhhhccccccc
Q 025828 220 KDSTLIMQLLRDNLTLWTSDMQEQI 244 (247)
Q Consensus 220 ~d~~~ilqlLrdNl~~W~~e~~~~~ 244 (247)
. +.++.=-.=|.++.+--|
T Consensus 197 ~------~~~~~fe~FWeS~vpRiG 215 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIG 215 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCC
Confidence 1 334444467887655333
No 57
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=31.58 E-value=5e+02 Score=27.08 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhh-HhhhHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEI 189 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg-L~LN~SVF~yei 189 (247)
-++.++|-++|+.+|...+.|.-.+-|= =+||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 5678999999999999888755444433 379999999963
No 58
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.51 E-value=67 Score=21.26 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=33.2
Q ss_pred HhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhh
Q 025828 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE 75 (247)
Q Consensus 18 q~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~ 75 (247)
+.|+|++++..+++++. .. |. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RN-PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HT-TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HC-CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 45777777777777776 22 33 666666666666554 66666777776655554
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=30.99 E-value=2.3e+02 Score=23.87 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHH
Q 025828 147 KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIM 226 (247)
Q Consensus 147 ~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~il 226 (247)
++--++|.++|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ..+-..-+...+
T Consensus 84 ~k~y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L 148 (165)
T PRK15331 84 KKQFQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYL 148 (165)
T ss_pred HHHHHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHH
Confidence 34456677777777765532 333344444 34446899988876 7888776311 112233366777
Q ss_pred HHHHhhHh
Q 025828 227 QLLRDNLT 234 (247)
Q Consensus 227 qlLrdNl~ 234 (247)
..|.+|.+
T Consensus 149 ~~l~~~~~ 156 (165)
T PRK15331 149 EALKTAET 156 (165)
T ss_pred HHHHcccc
Confidence 77776654
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.94 E-value=86 Score=22.04 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHH
Q 025828 9 YVYLAKLAEQAERYEEMVKFMDS 31 (247)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~ 31 (247)
...+|+...+.|+|+++++++++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 33446666666777776666653
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=30.67 E-value=1.5e+02 Score=23.39 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
.+.|..+|+.|+. +.|.||- ...|.++-+. .+|++++|+.....|+.
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4668899999985 4455552 2233333333 47999999886666654
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=29.75 E-value=1.4e+02 Score=25.16 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCC--HHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNS--SEKACTMAKQAF 204 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~--~~~A~~iak~af 204 (247)
+.|..+|++|+.+ .|.+ ..+.++++.-+|...|+ .++|.++..+|+
T Consensus 90 ~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 90 DNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4566677766643 2333 23334555433333444 356655555543
No 63
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=29.34 E-value=3e+02 Score=22.10 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHH------hCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEI------LNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTL 224 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei------~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ 224 (247)
+.|..+|++|+.+ .|.++ ....+.+..++.. .++.+.|.....+|.+-.-..+ .++.+.|.++..
T Consensus 89 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 159 (172)
T PRK02603 89 DKALEYYHQALEL-----NPKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQN 159 (172)
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHH
Confidence 5678888888864 23332 2233444444432 2445555554444433222211 134445555554
Q ss_pred HHHH
Q 025828 225 IMQL 228 (247)
Q Consensus 225 ilql 228 (247)
.+..
T Consensus 160 ~~~~ 163 (172)
T PRK02603 160 WLKT 163 (172)
T ss_pred HHHh
Confidence 4443
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.00 E-value=1.2e+02 Score=32.41 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh--cCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025828 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (247)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (247)
++|+.|+.+-.. ...|.||.-|...-||=+| -||.+.++.+|-.||..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 65
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.96 E-value=4.1e+02 Score=23.14 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=45.6
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhcchhhhhHHHHHH
Q 025828 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDY 90 (247)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 90 (247)
|+++|..+-.||+-+-.....-+ +...+|-.-+-..++.-+...+..+|.-.. +-.+. -..++ -
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~SL-e~~Le-Q 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQSL-EESLE-Q 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHH-HHHHH-H
Confidence 67777777777766654443322 233455555556666666666666665421 10000 00111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 025828 91 RSKVESELSDVCGSILKLLD 110 (247)
Q Consensus 91 k~ki~~EL~~~C~eii~lid 110 (247)
+.+=..||..||+|+|.=++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22234799999999987543
No 66
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.72 E-value=91 Score=31.68 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=40.4
Q ss_pred hccccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 025828 129 MKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (247)
Q Consensus 129 mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~af 204 (247)
+-++.||-+.....---|++--+.|+-.|++|++ +||.-.-++-=...+++. +|..++|+.+-.+|+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 3444444443333222233344555666666653 456666666666777766 799999999988885
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=26.65 E-value=1.3e+02 Score=20.19 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=32.2
Q ss_pred HHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Q 025828 13 AKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK 74 (247)
Q Consensus 13 Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ieqk 74 (247)
+.++-+.++|+.+++++..++. .+ |+ +..-+.....+|- ..+..-.|.+.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LD-PD-DPELWLQRARCLF-QLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hC-cc-cchhhHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 4566677888888888888876 43 43 5444444444443 234444555555543333
No 68
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=26.30 E-value=56 Score=28.13 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 025828 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAI 208 (247)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~ 208 (247)
.-+.|.++|++|..- .-+ | ..++...+|+.|||..||.=.
T Consensus 14 ~Ye~A~~~Ye~av~n---g~~---~--------------q~~Kql~KA~NIAKse~drda 53 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GSS---P--------------QELKQLKKAMNIAKSEFDRDA 53 (199)
T ss_dssp HHHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCC---H--------------HHHHHHHHHHhHHHHHHhHHH
Confidence 457889999999762 111 1 135778899999999998533
No 69
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=25.93 E-value=1.2e+02 Score=19.70 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 025828 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (247)
Q Consensus 10 ~~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls 51 (247)
+-+|+..-..|.++.+.+.+.+++. .+.++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 4689999999999999999999996 332334455555553
No 70
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.21 E-value=4.8e+02 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
.-.+..|+++-.+|+|+-+..++..+..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 4567899999999999999999988775
No 71
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=24.78 E-value=3.3e+02 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhhhh-----hhHHHHHHH
Q 025828 45 EERNLLSVAYKNVIGSL-----RAAWRIISS 70 (247)
Q Consensus 45 eERnLls~ayKn~i~~~-----R~s~R~l~~ 70 (247)
++...+-+-..++|+.+ |.|+|+|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556667888999976 578888763
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.72 E-value=2e+02 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhh
Q 025828 26 VKFMDSLVTSSTPATELTVEERNLLSVAYKNVI 58 (247)
Q Consensus 26 ~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i 58 (247)
+.++++.+. .+..+.++---+-|+...+=
T Consensus 11 ~~~~~~~~~----~~~~s~~~~esleva~qc~e 39 (304)
T KOG0553|consen 11 IQFLKQKSS----FGWISEDGAESLEVAIQCLE 39 (304)
T ss_pred HHhHHHHhh----cCCCCCcchhHHHHhHHHHH
Confidence 455666654 26677776666666665543
No 73
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=24.66 E-value=1.2e+02 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhh----HhhhHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYY 187 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg----L~LN~SVF~y 187 (247)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665433 58999999998 5667777653
No 74
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.62 E-value=4.9e+02 Score=22.98 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhh-HhhhHHHHHHHHhCCHHHHHHHHHHHHHHHH--HhhcccCCCchHhHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEILNSSEKACTMAKQAFEEAI--AELDTLGEESYKDSTLIM 226 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg-L~LN~SVF~yei~~~~~~A~~iak~afd~a~--~~ld~l~ee~~~d~~~il 226 (247)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+.+-.+..-.+.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3567788888877765 78888888988 7889999999853399999999999988631 233444433322245677
Q ss_pred HHHHhhHhhhhcc
Q 025828 227 QLLRDNLTLWTSD 239 (247)
Q Consensus 227 qlLrdNl~~W~~e 239 (247)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7777777777643
No 75
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.99 E-value=4.7e+02 Score=22.54 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHH---HHHHHHh
Q 025828 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA---FEEAIAE 210 (247)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~a---fd~a~~~ 210 (247)
-.+.|.++|.-|+-.+. +...+|...|...=-...+|.-+|+.+.....-++| |.+|+..
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999998874 444455555544444557788889877776666666 4555543
No 76
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=23.91 E-value=5.3e+02 Score=23.12 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHhcChHHHHHHHHHHh
Q 025828 11 YLAKLAEQAERYEEMVKFMDSLV 33 (247)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ii 33 (247)
.++.+.-+.|+|++++.....++
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHh
Confidence 34444444455555555444444
No 77
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=23.72 E-value=91 Score=24.37 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=29.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 025828 190 LNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (247)
Q Consensus 190 ~~~~~~A~~iak~afd~a~~~ld~l~ee~~~d~~~ilqlLrdNl~~W~~ 238 (247)
.+.+..+.++=..+|..+...|....+..-. ...-++-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 3334445555566777777776655432222 22223999999999984
No 78
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.62 E-value=78 Score=19.86 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=25.6
Q ss_pred ccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025828 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (247)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 171 (247)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 444456666654443 3567888999999988888874
No 79
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.33 E-value=98 Score=30.82 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHH------HHHhCCHHHHHHHHHHHHH
Q 025828 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFY------YEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~------yei~~~~~~A~~iak~afd 205 (247)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+..|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 80
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=23.16 E-value=1.1e+02 Score=22.68 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=31.2
Q ss_pred hhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCcchhhHhhhHHHHH
Q 025828 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFY 186 (247)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~p~rLgL~LN~SVF~ 186 (247)
.+++.|=|+-+.++..- .|+.|-.+|.. .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 46677778777766432 35666667754 79999999999999888765
No 81
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.54 E-value=1.7e+02 Score=20.12 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHhcChHHHHHHHHHHhh
Q 025828 12 LAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 12 ~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
...=.=|.|+|+++.+|+++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334578999999999999985
No 82
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.51 E-value=1e+03 Score=25.82 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
..+.+|++.-..|+|++++..++++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 357889999999999999999999986
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.29 E-value=1.3e+02 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025828 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (247)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (247)
.+.|.+.|++|+.++ |-.=-+-=||.-|++.. |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~--------p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLA--------PNNGDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcC--------CCccchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 467899999998755 22223455899999985 799998776555543
No 84
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=4.2e+02 Score=25.15 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=50.6
Q ss_pred ccccccchhhccc---chhH----HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHH
Q 025828 130 KGDYYRYLAEFKV---GDER----KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (247)
Q Consensus 130 kgDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~ 202 (247)
-++||.|+||-.. +... .+.-+.=.+-..++.+-|+.++..+ -+| ...+|-+-||-.| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~-ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGES-EVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4778888888332 2121 1222223344566677776666544 333 3467888887776 999999999999
Q ss_pred HHHHHHH
Q 025828 203 AFEEAIA 209 (247)
Q Consensus 203 afd~a~~ 209 (247)
+++++++
T Consensus 130 t~~ktvs 136 (393)
T KOG0687|consen 130 TYEKTVS 136 (393)
T ss_pred HHHHHhh
Confidence 9999987
No 85
>PHA02103 hypothetical protein
Probab=21.83 E-value=26 Score=27.55 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=11.8
Q ss_pred ccccccchhhcccch
Q 025828 130 KGDYYRYLAEFKVGD 144 (247)
Q Consensus 130 kgDyyRYlaE~~~~~ 144 (247)
.-|||||.+|-..+-
T Consensus 78 ipdyyryf~ee~e~i 92 (135)
T PHA02103 78 IPDYYRYFGEEAEGV 92 (135)
T ss_pred ChHHHHHhcccchhh
Confidence 579999999866553
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=21.61 E-value=1e+03 Score=25.69 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 025828 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (247)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~i 71 (247)
.++.++-..|+|++++..+++++. .. |. +..=...|..+|.. .+....+.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~~-P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--VD-NT-DSYAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345666678999999999999997 43 43 23334445555532 35555566655543
No 87
>PRK11820 hypothetical protein; Provisional
Probab=20.90 E-value=2.1e+02 Score=26.14 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcchhhHhhhHH-HHHHHHhCCHHHHHHHHHHHHHHHHHhhccc
Q 025828 154 MLSYKAAQDIALTDLAPTHPIRLGLALNFS-VFYYEILNSSEKACTMAKQAFEEAIAELDTL 214 (247)
Q Consensus 154 ~~aY~~A~~~a~~~L~pt~p~rLgL~LN~S-VF~yei~~~~~~A~~iak~afd~a~~~ld~l 214 (247)
.++|-+++.-....++...|+.|.-.|.+. |+. +-..+.+..-.....|++.|++.+...
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~-~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLE-AEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCccc-CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666664443466544599999888874 433 223466666678899999999887654
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=20.80 E-value=5.9e+02 Score=22.50 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=20.1
Q ss_pred cHHhHHHHHHHHHHhcChHHHHHHHHHHhh
Q 025828 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (247)
Q Consensus 5 ~re~~~~~Aklaeq~ery~dm~~~mk~ii~ 34 (247)
.++.....|-++-+.|+++++...+.++++
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666667777777777777665
No 89
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=20.42 E-value=1.3e+02 Score=24.11 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 025828 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLG 177 (247)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~p~rLg 177 (247)
.....|..+|+.+-.++. .+|+.-||..|
T Consensus 20 ~a~~~s~~~~~~a~~~~~-~ip~GQPIlVG 48 (126)
T PF12083_consen 20 KAAARSEAAYEAANRMAE-AIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCCeecc
Confidence 456778899999999884 79999999998
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.40 E-value=1.7e+02 Score=30.18 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhhHhhhHHHHHHHHhCCHHHHHHHHHHH------HHHHHHhhccc
Q 025828 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA------FEEAIAELDTL 214 (247)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~a------fd~a~~~ld~l 214 (247)
.-.++|..+|++|+.+. |+.---.-|..+=|.| +|+...|++.-..| |.+|.++|-.+
T Consensus 402 gnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred ccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 34678999999998754 5555556678888887 69999999887775 55777766543
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.37 E-value=3e+02 Score=23.11 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHhHHHHHHH-HHHhcC--hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 025828 6 REQYVYLAKL-AEQAER--YEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (247)
Q Consensus 6 re~~~~~Akl-aeq~er--y~dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (247)
-+-+..+|.+ ..+.|+ ++++...+.+++. .+ |. +.+=+.+|..++-. .+....|......
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~d-P~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALA--LD-AN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hC-CC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3445666774 466777 4888888888886 43 33 45566666666643 4555555554444
Done!