Query 025829
Match_columns 247
No_of_seqs 128 out of 1180
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:01:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 4.9E-36 1.1E-40 285.1 21.9 209 1-213 397-616 (617)
2 PLN03140 ABC transporter G fam 100.0 1E-34 2.3E-39 295.1 21.5 209 3-214 1254-1470(1470)
3 PLN03211 ABC transporter G-25; 100.0 1.6E-34 3.5E-39 275.5 20.4 204 1-210 443-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-34 2.4E-39 295.1 20.1 210 1-213 458-697 (1394)
5 PLN03140 ABC transporter G fam 100.0 1.9E-34 4.1E-39 293.2 20.8 208 1-211 575-790 (1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 4.3E-32 9.3E-37 276.3 19.7 202 5-211 1138-1391(1394)
7 KOG0065 Pleiotropic drug resis 100.0 4.1E-32 8.9E-37 264.7 18.5 213 1-216 497-736 (1391)
8 KOG0061 Transporter, ABC super 100.0 8.4E-32 1.8E-36 254.7 20.1 209 2-214 395-612 (613)
9 KOG0065 Pleiotropic drug resis 99.9 1.7E-25 3.7E-30 218.8 12.8 196 16-214 1176-1387(1391)
10 PF01061 ABC2_membrane: ABC-2 99.7 3.9E-18 8.4E-23 140.1 -3.2 141 13-157 70-210 (210)
11 TIGR03062 pip_yhgE_Cterm YhgE/ 99.6 5.7E-15 1.2E-19 122.4 14.3 151 34-210 57-207 (208)
12 TIGR01291 nodJ ABC-2 type tran 99.5 1.1E-12 2.5E-17 112.0 17.8 163 23-209 80-250 (253)
13 TIGR01247 drrB daunorubicin re 99.5 1.5E-12 3.2E-17 109.9 17.4 151 31-204 84-234 (236)
14 TIGR00025 Mtu_efflux ABC trans 99.5 3.5E-12 7.6E-17 107.5 17.2 151 34-207 76-229 (232)
15 PRK15066 inner membrane transp 99.3 1.5E-10 3.3E-15 99.0 17.4 157 33-213 100-256 (257)
16 TIGR03861 phenyl_ABC_PedC alco 99.2 1E-09 2.2E-14 93.6 18.9 149 34-208 99-250 (253)
17 TIGR01248 drrC daunorubicin re 99.2 2.3E-10 5.1E-15 90.4 12.3 133 17-155 13-148 (152)
18 COG0842 ABC-type multidrug tra 99.2 1.6E-09 3.5E-14 92.4 16.1 155 35-211 129-284 (286)
19 PF06422 PDR_CDR: CDR ABC tran 98.6 1.2E-07 2.6E-12 69.9 5.2 50 166-216 31-80 (103)
20 PF12698 ABC2_membrane_3: ABC- 98.5 2.1E-08 4.5E-13 87.5 0.0 158 17-203 181-343 (344)
21 TIGR03518 ABC_perm_GldF glidin 98.5 9.5E-06 2E-10 68.9 15.3 154 23-208 71-239 (240)
22 COG1682 TagG ABC-type polysacc 98.2 0.00016 3.6E-09 62.1 18.0 167 16-211 91-257 (263)
23 PF12679 ABC2_membrane_2: ABC- 97.9 0.0005 1.1E-08 58.8 14.5 169 22-209 87-275 (277)
24 PRK15176 Vi polysaccharide exp 97.9 0.0013 2.8E-08 56.7 16.8 107 81-210 154-260 (264)
25 PF08370 PDR_assoc: Plant PDR 97.5 0.00028 6E-09 47.2 4.8 48 166-213 11-58 (65)
26 PF12051 DUF3533: Protein of u 97.1 0.0086 1.9E-07 54.3 12.3 137 35-198 240-380 (382)
27 COG1511 Predicted membrane pro 97.0 0.014 3.1E-07 57.7 13.9 150 29-204 610-759 (780)
28 COG1277 NosY ABC-type transpor 96.8 0.042 9E-07 47.1 13.6 174 23-210 81-276 (278)
29 TIGR01257 rim_protein retinal- 96.8 0.12 2.6E-06 56.3 19.0 151 3-157 659-812 (2272)
30 TIGR03733 lanti_perm_MutG lant 95.9 0.93 2E-05 38.4 16.3 79 24-102 67-158 (248)
31 PF03379 CcmB: CcmB protein; 95.8 0.096 2.1E-06 43.7 9.6 94 22-117 65-166 (215)
32 COG4587 ABC-type uncharacteriz 95.4 0.34 7.3E-06 41.0 11.3 162 25-207 84-257 (268)
33 TIGR01190 ccmB heme exporter p 93.6 0.75 1.6E-05 38.2 9.4 95 21-117 61-163 (211)
34 PF06182 ABC2_membrane_6: ABC- 93.5 3.8 8.3E-05 34.1 15.0 126 23-152 52-186 (229)
35 PF12730 ABC2_membrane_4: ABC- 92.5 2.2 4.8E-05 34.1 10.7 91 23-114 68-174 (232)
36 TIGR01257 rim_protein retinal- 91.6 2.4 5.1E-05 46.8 12.1 92 19-112 1702-1797(2272)
37 COG1668 NatB ABC-type Na+ effl 91.4 11 0.00024 34.5 15.9 78 34-111 227-316 (407)
38 TIGR03732 lanti_perm_MutE lant 89.0 13 0.00028 31.4 16.3 115 25-153 63-189 (241)
39 COG4200 Uncharacterized protei 87.8 15 0.00033 30.9 17.2 110 26-146 76-198 (239)
40 COG2386 CcmB ABC-type transpor 86.2 5.8 0.00013 32.9 8.1 94 22-117 68-169 (221)
41 COG3559 TnrB3 Putative exporte 78.8 56 0.0012 30.4 14.5 157 17-210 371-533 (536)
42 PF01102 Glycophorin_A: Glycop 73.6 5.4 0.00012 30.2 3.8 21 185-205 68-88 (122)
43 KOG0059 Lipid exporter ABCA1 a 71.1 40 0.00087 34.2 10.4 97 18-117 319-417 (885)
44 TIGR01195 oadG_fam sodium pump 68.0 12 0.00027 26.1 4.4 18 189-206 10-27 (82)
45 PF11446 DUF2897: Protein of u 67.6 8.1 0.00018 24.9 3.1 25 190-214 7-31 (55)
46 PF04277 OAD_gamma: Oxaloaceta 65.4 16 0.00034 25.0 4.5 16 190-205 8-23 (79)
47 PF12273 RCR: Chitin synthesis 53.9 16 0.00035 27.7 3.2 12 185-196 2-13 (130)
48 KOG4112 Signal peptidase subun 52.9 30 0.00066 24.8 4.1 17 129-149 67-83 (101)
49 PF04277 OAD_gamma: Oxaloaceta 50.7 32 0.0007 23.4 4.1 16 189-204 17-32 (79)
50 PRK11246 hypothetical protein; 48.7 32 0.0007 28.7 4.4 21 184-204 163-183 (218)
51 PF02009 Rifin_STEVOR: Rifin/s 47.8 21 0.00046 31.3 3.3 19 197-215 270-288 (299)
52 PF15330 SIT: SHP2-interacting 46.1 54 0.0012 24.1 4.8 22 189-210 8-29 (107)
53 PTZ00046 rifin; Provisional 38.0 38 0.00081 30.5 3.4 31 184-215 317-347 (358)
54 TIGR01477 RIFIN variant surfac 37.7 38 0.00083 30.4 3.4 31 184-215 312-342 (353)
55 PF06305 DUF1049: Protein of u 36.1 28 0.00061 22.8 1.9 32 185-216 19-50 (68)
56 PF11119 DUF2633: Protein of u 35.7 72 0.0016 20.8 3.5 19 188-206 12-30 (59)
57 PF03348 Serinc: Serine incorp 35.6 3.6E+02 0.0079 25.0 11.5 30 184-213 281-310 (429)
58 PF12273 RCR: Chitin synthesis 33.9 32 0.00069 26.0 2.0 14 191-204 4-17 (130)
59 PF05393 Hum_adeno_E3A: Human 33.7 96 0.0021 22.0 4.2 29 188-216 37-65 (94)
60 COG3559 TnrB3 Putative exporte 33.7 4.1E+02 0.0088 24.9 10.3 66 78-151 168-233 (536)
61 PF07214 DUF1418: Protein of u 33.1 87 0.0019 22.6 4.0 44 192-235 49-92 (96)
62 PF06295 DUF1043: Protein of u 31.1 55 0.0012 24.8 2.9 25 190-215 2-26 (128)
63 COG3763 Uncharacterized protei 30.9 19 0.00041 24.4 0.3 10 235-244 51-60 (71)
64 COG4393 Predicted membrane pro 29.4 4.2E+02 0.0092 23.8 9.0 39 67-106 20-58 (405)
65 KOG2532 Permease of the major 29.0 3.6E+02 0.0078 25.2 8.5 42 3-44 262-309 (466)
66 PF06679 DUF1180: Protein of u 28.9 89 0.0019 24.9 3.8 12 184-195 94-105 (163)
67 PRK11677 hypothetical protein; 26.9 81 0.0018 24.2 3.2 25 189-214 5-29 (134)
68 COG5062 Uncharacterized membra 26.5 1.1E+02 0.0024 27.6 4.3 41 200-240 72-112 (429)
69 PF15345 TMEM51: Transmembrane 25.7 70 0.0015 26.9 2.8 24 190-214 63-86 (233)
70 PF06645 SPC12: Microsomal sig 24.1 2.2E+02 0.0048 19.4 4.7 21 90-110 21-41 (76)
71 PF05545 FixQ: Cbb3-type cytoc 23.5 1.3E+02 0.0028 18.5 3.1 20 188-207 12-31 (49)
72 PRK05886 yajC preprotein trans 23.4 85 0.0018 23.2 2.6 12 198-209 14-25 (109)
73 COG3771 Predicted membrane pro 22.8 1.1E+02 0.0025 21.6 3.0 38 185-222 44-81 (97)
74 COG3630 OadG Na+-transporting 22.6 1.7E+02 0.0037 20.5 3.8 16 191-206 15-30 (84)
75 PF12606 RELT: Tumour necrosis 22.5 2.1E+02 0.0046 18.0 4.2 17 191-207 6-22 (50)
76 PF12725 DUF3810: Protein of u 22.4 1.7E+02 0.0036 25.9 4.8 34 30-63 3-36 (318)
77 PF08507 COPI_assoc: COPI asso 22.4 2.1E+02 0.0046 21.7 4.8 15 197-211 96-110 (136)
78 PF03672 UPF0154: Uncharacteri 22.3 30 0.00064 23.0 0.0 18 190-207 3-20 (64)
79 PF05568 ASFV_J13L: African sw 22.3 2.4E+02 0.0052 22.1 4.9 7 190-196 34-40 (189)
80 COG4736 CcoQ Cbb3-type cytochr 21.8 1.2E+02 0.0027 19.8 2.8 10 230-239 46-55 (60)
81 PF13179 DUF4006: Family of un 21.2 1.1E+02 0.0024 20.5 2.5 26 189-214 15-40 (66)
82 COG2991 Uncharacterized protei 20.9 1.8E+02 0.0039 19.8 3.5 24 191-214 5-28 (77)
83 PF15179 Myc_target_1: Myc tar 20.5 1.6E+02 0.0036 23.9 3.8 7 168-174 9-15 (197)
84 PF15048 OSTbeta: Organic solu 20.4 3.4E+02 0.0074 20.6 5.3 8 168-175 16-23 (125)
85 PF07857 DUF1632: CEO family ( 20.0 5.5E+02 0.012 22.0 7.3 41 114-157 54-98 (254)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.9e-36 Score=285.09 Aligned_cols=209 Identities=22% Similarity=0.442 Sum_probs=192.2
Q ss_pred ChHhHHHHHHh-hhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHH
Q 025829 1 MFVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV 79 (247)
Q Consensus 1 ~~~~~~~~~~~-~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~ 79 (247)
|++++..++.+ +.+++.|+.||++|.||+.+|+|++.+|++|++++++|..++.+++|.++.|||+|+++++.+|+.++
T Consensus 397 f~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~ 476 (617)
T TIGR00955 397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFL 476 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHH
Confidence 35566667765 46889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC
Q 025829 80 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG 159 (247)
Q Consensus 80 l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~ 159 (247)
+++++..+++.++|+++++++|+...|+.+++++..++++++|++++.++||+ ||+ |++|+||++|++++++.|||++
T Consensus 477 l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~ 554 (617)
T TIGR00955 477 FLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSD 554 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 666 5999999999999999999988
Q ss_pred Ccc-C---------CCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829 160 LKF-D---------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 213 (247)
Q Consensus 160 ~~~-~---------c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~ 213 (247)
.++ + |..+|+++|+. +|++.++ .|.++++|+++.++|+++++++||++.+++
T Consensus 555 ~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 555 VDNIECTSANTTGPCPSSGEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred CccccccCcCcCCCCCcChHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 653 3 45679999998 8998775 899999999999999999999999876654
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-34 Score=295.09 Aligned_cols=209 Identities=22% Similarity=0.362 Sum_probs=192.1
Q ss_pred HhHHHHHHhh-hcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHH
Q 025829 3 VASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLL 81 (247)
Q Consensus 3 ~~~~~~~~~~-~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~ 81 (247)
++.+.++... +.+|.|..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+|++++.+.|+.++++
T Consensus 1254 ~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~ 1333 (1470)
T PLN03140 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFI 1333 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence 4445555443 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCc
Q 025829 82 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK 161 (247)
Q Consensus 82 ~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~ 161 (247)
+++..+++.++|+++++++||...|..+++++..++++|||+++|.++||+ ||+ |++|+||++|++++++.|+|+|.+
T Consensus 1334 ~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~ 1411 (1470)
T PLN03140 1334 SFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVE 1411 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999998 787 599999999999999999999876
Q ss_pred cCCC-------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 162 FDNN-------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 162 ~~c~-------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
+.|+ .++++++.+.+|+++++ .|++++++++|.++|++++++++++.+.+|+
T Consensus 1412 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1412 DTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CcccCCCCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 5442 45778887779999886 9999999999999999999999999998875
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-34 Score=275.53 Aligned_cols=204 Identities=18% Similarity=0.323 Sum_probs=177.7
Q ss_pred ChHhHHHHHH-hhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHH
Q 025829 1 MFVASYLTFM-TIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV 79 (247)
Q Consensus 1 ~~~~~~~~~~-~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~ 79 (247)
||++.+.++. ++++++.|+.||++|+||+++|+|++.+|++|++++++|+.++.+++|.+|+|||+|++++..+|+.++
T Consensus 443 ff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~ 522 (659)
T PLN03211 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTL 522 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHH
Confidence 3555665654 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC
Q 025829 80 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG 159 (247)
Q Consensus 80 l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~ 159 (247)
+++++..+++.++|+++++++||...|+.+++++..++++|||++++ +||+ ||+ |++|+||++|++|+++.|||.+
T Consensus 523 li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~ 598 (659)
T PLN03211 523 LVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGE 598 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999997 7998 677 5999999999999999999976
Q ss_pred Cc-----cCCCC------CHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829 160 LK-----FDNNL------DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 160 ~~-----~~c~~------~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
.+ +.|+. .+..++.+ ...+.. +.|.++++|+++.++++++++++|++.+
T Consensus 599 ~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 599 GKRISSLLGCSLPHGSDRASCKFVEE-DVAGQI-SPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccccccccCCCCcccCCCCCCccchh-hhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 23431 12223333 222323 3899999999999999999999998654
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-34 Score=295.10 Aligned_cols=210 Identities=21% Similarity=0.437 Sum_probs=195.7
Q ss_pred ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829 1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l 80 (247)
||++++++++++..++.+..||++|+||+++|+|++++|++|++++++|..++.+++|.+|+|||.|++.+.++|+.+++
T Consensus 458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l 537 (1394)
T TIGR00956 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence 57788888888888898999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL 160 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~ 160 (247)
++++..+++.+++.++++++||...|+.+++++..++++++|+++|.++||+ ||+ |++|+||++|++|+++.|||++.
T Consensus 538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~ 615 (1394)
T TIGR00956 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGR 615 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCC
Confidence 9999999999999999999999999999999999999999999999999998 565 69999999999999999999987
Q ss_pred ccCCC------------------------------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829 161 KFDNN------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 161 ~~~c~------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
++.|. .+|+++|+..++++.++ .|+|++++++|+++|++++++++++.+
T Consensus 616 ~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 616 RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65552 38899999768888876 999999999999999999999999877
Q ss_pred ccc
Q 025829 211 KMK 213 (247)
Q Consensus 211 ~~~ 213 (247)
...
T Consensus 695 ~~~ 697 (1394)
T TIGR00956 695 GAK 697 (1394)
T ss_pred ccC
Confidence 443
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.9e-34 Score=293.24 Aligned_cols=208 Identities=18% Similarity=0.340 Sum_probs=192.6
Q ss_pred ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829 1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l 80 (247)
||+++.+++++++.++.++.||++|+|||+.++|++++|++|++++++|..++.+++|.+|+|||+|++++.++|+.+++
T Consensus 575 ff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l 654 (1470)
T PLN03140 575 LFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL 654 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHH
Confidence 46777788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL 160 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~ 160 (247)
++++..+++.+++.++++++++...|+.+++++..++++++||++|.++||+ ||+ |++|+||++|++++++.|||.+.
T Consensus 655 ~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~ 732 (1470)
T PLN03140 655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAP 732 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999999999999999998 566 59999999999999999999876
Q ss_pred ccC---C----CCCHHHHHhhhhCcccCc-cchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025829 161 KFD---N----NLDGEQVLRDKWQLQMGY-SKWVDLAILFGMVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 161 ~~~---c----~~~g~~~L~~~~~~~~~~-~~~~~~~iL~~~~i~f~~l~~~~l~~~~~ 211 (247)
.+. | ..+|+++|+. +|++.++ +.|.++++|++++++|++++++++++.+.
T Consensus 733 ~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 733 RWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 432 2 3689999977 8887653 47999999999999999999999998773
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.3e-32 Score=276.27 Aligned_cols=202 Identities=18% Similarity=0.273 Sum_probs=181.2
Q ss_pred HHHHHHhhhcchhhhhHHHHH-HHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHH-------HH
Q 025829 5 SYLTFMTIGGFPSFVEDMKVF-ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQH-------FI 76 (247)
Q Consensus 5 ~~~~~~~~~~i~~f~~er~v~-~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~-------f~ 76 (247)
....+....++|.|+.||.++ +||+++|+|++.+|++|++++|+|+.++.+++|.+++||++|++++... |+
T Consensus 1138 ~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~ 1217 (1394)
T TIGR00956 1138 VLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217 (1394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHH
Confidence 333344456889999999997 8999999999999999999999999999999999999999999877655 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHh
Q 025829 77 YFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNE 156 (247)
Q Consensus 77 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~ 156 (247)
.+++++++..+++.++|+++++++|+...|+.+++++..++++|||+++|.++||. +|+ |++|+||++|++++++.++
T Consensus 1218 ~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l~~~~ 1295 (1394)
T TIGR00956 1218 LFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQALLSTG 1295 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 788 5999999999999999999
Q ss_pred hCCCccCCC--------------------------------------------CCHHHHHhhhhCcccCccchhhHHHHH
Q 025829 157 FEGLKFDNN--------------------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILF 192 (247)
Q Consensus 157 f~~~~~~c~--------------------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~ 192 (247)
|+|.+..|. .+|+++|+. ++++.++ .|+|+++++
T Consensus 1296 ~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~ 1373 (1394)
T TIGR00956 1296 LADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFI 1373 (1394)
T ss_pred cCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhh
Confidence 988764331 489999998 7888876 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 025829 193 GMVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 193 ~~~i~f~~l~~~~l~~~~~ 211 (247)
++.+++ ++++++++++.|
T Consensus 1374 ~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1374 AFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHH-HHHHHhhheEEE
Confidence 999877 888888887644
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-32 Score=264.69 Aligned_cols=213 Identities=24% Similarity=0.450 Sum_probs=197.5
Q ss_pred ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829 1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l 80 (247)
||.+.++++.+++.++...+.|++++|+|...+|++|++.++..+.++|..++.+.+|..|.|++.|+.+++++|+.+++
T Consensus 497 ffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL 576 (1391)
T KOG0065|consen 497 FFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFL 576 (1391)
T ss_pred HHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL 160 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~ 160 (247)
+++++..|+.++..++++++++...|+.++++.+....+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||++.
T Consensus 577 ~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~ 654 (1391)
T KOG0065|consen 577 FLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGR 654 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999998 555 69999999999999999999998
Q ss_pred ccCCC---------------------------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829 161 KFDNN---------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 213 (247)
Q Consensus 161 ~~~c~---------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~ 213 (247)
++.|. ..|+++++..|++++.+ .|++++++++|.++|.++..+++.+.+..+
T Consensus 655 ~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 655 RWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred cCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 77663 34667776667777765 999999999999999999999999988665
Q ss_pred cch
Q 025829 214 PVV 216 (247)
Q Consensus 214 ~~~ 216 (247)
.+.
T Consensus 734 ~~~ 736 (1391)
T KOG0065|consen 734 KSG 736 (1391)
T ss_pred ccc
Confidence 543
No 8
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-32 Score=254.72 Aligned_cols=209 Identities=29% Similarity=0.632 Sum_probs=192.1
Q ss_pred hHhHHHHHHh-hhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829 2 FVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL 80 (247)
Q Consensus 2 ~~~~~~~~~~-~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l 80 (247)
|++...++.+ +++++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|..++|||.|++++..+|..+++
T Consensus 395 ~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l 474 (613)
T KOG0061|consen 395 FILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLL 474 (613)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 5566666665 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC-
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG- 159 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~- 159 (247)
++++..+++.++|+++++..||...|+.+++++..++++++|++++.+++|+ +|+ |++|+|+.||++|+++.|+|.+
T Consensus 475 ~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~ 552 (613)
T KOG0061|consen 475 IILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGG 552 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999998 454 6999999999999999999995
Q ss_pred -Ccc------CCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 160 -LKF------DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 160 -~~~------~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
.+| .|..+|.+++++ .+++.++ .|.|+.+++++.++|+++++++++++.+.++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 553 SSRCFLSGNLCCESTGEDVLKQ-LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred ccccccCcCCcccccHHHHHHh-cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 222 356899999999 7887765 9999999999999999999999999887654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.7e-25 Score=218.77 Aligned_cols=196 Identities=21% Similarity=0.324 Sum_probs=174.9
Q ss_pred hhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025829 16 PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 95 (247)
Q Consensus 16 ~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~ 95 (247)
+.+..||.+++||+.+|+||+.+|++|++++|+|+.++++++|.++.|+++|+..+..+++.+++..+++.++...+|++
T Consensus 1176 ~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm 1255 (1391)
T KOG0065|consen 1176 PAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMM 1255 (1391)
T ss_pred hHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCC----------
Q 025829 96 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN---------- 165 (247)
Q Consensus 96 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~---------- 165 (247)
+.+++||.+.|..+.+++.....+|||++.|++.||. ||. |++|+||..|.+++++..+++|.+..|.
T Consensus 1256 ~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp 1333 (1391)
T KOG0065|consen 1256 LVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPP 1333 (1391)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCC
Confidence 9999999999999999999999999999999999998 888 5999999999999999999999887774
Q ss_pred --CCHHHHHhhhhC----cccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 166 --LDGEQVLRDKWQ----LQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 166 --~~g~~~L~~~~~----~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
.+-.++++..+| +.++. ....-.+.+++.+++.+++.+..++.++.|+
T Consensus 1334 ~g~tcge~m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1334 SGQTCGEFMEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCcCHHHHHHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 355678888777 65553 3444456677888999999999998887654
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.65 E-value=3.9e-18 Score=140.06 Aligned_cols=141 Identities=28% Similarity=0.416 Sum_probs=130.1
Q ss_pred hcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 025829 13 GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 92 (247)
Q Consensus 13 ~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l 92 (247)
+......+||..+.||+.++.|++.+|+++|.+.+++..++..+++..+.+.+.|++.+ ++..+.+.+++..+++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 147 (210)
T PF01061_consen 70 GSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGL 147 (210)
T ss_pred cchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheeccccccccccccc
Confidence 34478999999999999999999999999999999999999999999999999998766 6777888888999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhh
Q 025829 93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 157 (247)
Q Consensus 93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f 157 (247)
|.+++.++++.+.+..+.+.+..+++++||.+.|.+++|+ |..|+.+++|++|+.|+++.++|
T Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 148 GLLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred ccccccchhhhhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999997 55569999999999999988765
No 11
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.64 E-value=5.7e-15 Score=122.38 Aligned_cols=151 Identities=14% Similarity=0.052 Sum_probs=123.4
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 025829 34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 113 (247)
Q Consensus 34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~ 113 (247)
-+.+.++++|.+...+..+++.++...+.+++.|+++. +++..++..++..++..++|..++...++...+ .....
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 47788999999999999999999999999998898753 567777888889999999999999999876543 34444
Q ss_pred HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHHH
Q 025829 114 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG 193 (247)
Q Consensus 114 ~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 193 (247)
..++++++|.+.|.+++|+ |.+|+.+++|++|+.+++....+++. .. +.|.++.++++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------~~-~~~~~~~~L~~ 190 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGGN-------------------DG-TLWQAVAVLLL 190 (208)
T ss_pred HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCCc-------------------HH-HHHHHHHHHHH
Confidence 5577778999999999998 55569999999999999977665331 11 26889999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025829 194 MVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 194 ~~i~f~~l~~~~l~~~~ 210 (247)
+.+++.+++...+|+++
T Consensus 191 ~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 191 ILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999998888776544
No 12
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.52 E-value=1.1e-12 Score=112.05 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=125.6
Q ss_pred HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 025829 23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMM 94 (247)
Q Consensus 23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~ 94 (247)
..+.|||++|.+ ++..+++||++.+....+++.++...+.+. .|..+ ..+........++..+...++|.
T Consensus 80 ~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~-~~~~l~~~~~~ll~~l~~~~lg~ 157 (253)
T TIGR01291 80 ATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIE-WWSLIYILPVIALTGLAFASLSM 157 (253)
T ss_pred HHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666664 789999999999988887877765555543 34433 34455555566677788889999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhh
Q 025829 95 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRD 174 (247)
Q Consensus 95 ~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~ 174 (247)
+++...++.+.+..+.+.+..+++++||.+.|.+.+|+ |.+++.+++|++|..|++....+++
T Consensus 158 ~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~--------------- 220 (253)
T TIGR01291 158 LVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG--------------- 220 (253)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC---------------
Confidence 99999999999999999999999999999999999998 5556999999999999987654422
Q ss_pred hhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 025829 175 KWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV 209 (247)
Q Consensus 175 ~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~ 209 (247)
+.. +.+.++++++++.+++..++...+|++
T Consensus 221 ----~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 221 ----PGT-QVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 245778899999988888887766654
No 13
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.51 E-value=1.5e-12 Score=109.94 Aligned_cols=151 Identities=16% Similarity=0.067 Sum_probs=122.5
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 025829 31 NGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG 110 (247)
Q Consensus 31 ~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 110 (247)
....+...++++|.+.+.+..+++.++...+.+++.+.+. ..+....+...+...+..++|.+++...+|.+.+..+.
T Consensus 84 ~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~ 161 (236)
T TIGR01247 84 VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIM 161 (236)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3344789999999999999999999988888888777543 34555555666677788999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829 111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 190 (247)
Q Consensus 111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 190 (247)
+.+..++.++||.+.|.+.+|+ |.+|+.+++|.+|+.|++.....++.. .. +.+.++++
T Consensus 162 ~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------~~-~~~~~~~~ 220 (236)
T TIGR01247 162 SMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGVSP------------------TF-PLEQDLLV 220 (236)
T ss_pred HHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCCCc------------------cc-chHHHHHH
Confidence 9999999999999999999998 555699999999999998654332211 12 36789999
Q ss_pred HHHHHHHHHHHHHH
Q 025829 191 LFGMVVFYRLVFLG 204 (247)
Q Consensus 191 L~~~~i~f~~l~~~ 204 (247)
++++.+++..++..
T Consensus 221 l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 221 LTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887764
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.47 E-value=3.5e-12 Score=107.53 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=110.5
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHH
Q 025829 34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITG 110 (247)
Q Consensus 34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~~~ 110 (247)
.++..|+++|.+...+..+++..+.. +.++..|++.... ....++...+....+.+++.+++.+.+ +.+.+..+.
T Consensus 76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 38999999999988888777765554 4455678865433 233334444555566677777777764 455557788
Q ss_pred HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829 111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 190 (247)
Q Consensus 111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 190 (247)
+.+..++.++||.+.|.+++|+ |.+|+.+++|++|+.+++.....++.+ .+ ..+.++.+
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~~------------------~~-~~~~~~~~ 212 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSVD------------------TF-GAVRDLVV 212 (232)
T ss_pred HHHHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCCC------------------hh-hHHHHHHH
Confidence 8889999999999999999998 666799999999999998765443322 12 26788889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025829 191 LFGMVVFYRLVFLGIIK 207 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l~ 207 (247)
++++.+++..++...+|
T Consensus 213 l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 213 VLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99998888777776554
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.32 E-value=1.5e-10 Score=99.03 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 025829 33 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG 112 (247)
Q Consensus 33 ~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~ 112 (247)
-.+...+.+++++......+++.++...+.....|.++. .........++........|.+++...++.+....+.+.
T Consensus 100 p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~ 177 (257)
T PRK15066 100 PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTF 177 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 358889999999998888777776666666555566432 233333333343444445588999888888888889999
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHH
Q 025829 113 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILF 192 (247)
Q Consensus 113 ~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~ 192 (247)
+..+++..||.+.|.+++|+ |.+|+.+++|++|..|++......+ +. .+.|.++++++
T Consensus 178 ~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~-------------------~~-~~~~~~l~~l~ 235 (257)
T PRK15066 178 VLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGI-------------------SD-VPLWLAFAVLL 235 (257)
T ss_pred HHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCC-------------------CC-ccHHHHHHHHH
Confidence 99999999999999999998 6667999999999999997654421 11 12578899999
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 025829 193 GMVVFYRLVFLGIIKTVEKMK 213 (247)
Q Consensus 193 ~~~i~f~~l~~~~l~~~~~~~ 213 (247)
++.+++..++...+|++++.|
T Consensus 236 ~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 236 VFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred HHHHHHHHHHHHHHHhhcccC
Confidence 999999989988877655543
No 16
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.25 E-value=1e-09 Score=93.64 Aligned_cols=149 Identities=10% Similarity=0.028 Sum_probs=112.2
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 025829 34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 113 (247)
Q Consensus 34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~ 113 (247)
.+...+.++|.+.+....+++.++...+.+. .|.+.+..+++.......+......++|.+++.+.++.+.+..+.+.+
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3788899999999998888877665555543 366544344444445556677778899999999999988888888889
Q ss_pred HHHHHHhcccccCCCCC---CcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829 114 QGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 190 (247)
Q Consensus 114 ~~~~~l~sG~~~~~~~i---P~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 190 (247)
..+++.+||.+.|.+.+ |+ |.+|+.+++|++|..|++.....++ . .|..+..
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~~~~~~ 232 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NLPALGW 232 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-chhHHHH
Confidence 99999999999998777 65 5566999999999999997543211 1 2456677
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025829 191 LFGMVVFYRLVFLGIIKT 208 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l~~ 208 (247)
+.++.+++..++...+|+
T Consensus 233 ~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 233 TLGATTLFTLLAFWGFDP 250 (253)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 778888777777776543
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.22 E-value=2.3e-10 Score=90.40 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=97.1
Q ss_pred hhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHH---HHHHHHHHHHHHHHHH
Q 025829 17 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY---FVLLLFACMLLVESLM 93 (247)
Q Consensus 17 ~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~---~~l~~~l~~~~~~~lg 93 (247)
...+|+..++|-+..-. +.++++++|++......+++.++...+.+. .|.+.+. .+.. ..++..+.......+|
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~ 89 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV 89 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444 899999999999999999998888888854 4887653 3332 2223344445555666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHH
Q 025829 94 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKN 155 (247)
Q Consensus 94 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~ 155 (247)
..++...++.+. ....+.+..++.++||.+.|.+++|+ |.+|+.+++|++|+.+++...
T Consensus 90 ~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~~ 148 (152)
T TIGR01248 90 MAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACADL 148 (152)
T ss_pred HHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHHH
Confidence 666665555554 44457788899999999999999998 888899999999999999753
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.17 E-value=1.6e-09 Score=92.43 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHH
Q 025829 35 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA-SLVPNYLTGIITGAGI 113 (247)
Q Consensus 35 ~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is-~~~~~~~~a~~~~~~~ 113 (247)
+...+++++.+.......+...+...+..+..|.. ...++........+......++|.+++ ...++.+.+..+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 207 (286)
T COG0842 129 SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLL 207 (286)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43567777777777666666666666666666642 345566666667777778888888666 3666788888888899
Q ss_pred HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHHH
Q 025829 114 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG 193 (247)
Q Consensus 114 ~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 193 (247)
..++.+++|.+.|.+.+|+ |..|+.++.|.+|+.+++......+... + +.+.++.++++
T Consensus 208 ~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~~------------------~-~~~~~~~~l~~ 266 (286)
T COG0842 208 ILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWRN------------------D-GIWISLLILLL 266 (286)
T ss_pred HHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCch------------------h-hHHHHHHHHHH
Confidence 9999999999999999998 5667999999999999997655543221 1 27889999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 025829 194 MVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 194 ~~i~f~~l~~~~l~~~~~ 211 (247)
+.+++.+++...+|++.+
T Consensus 267 ~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999998877655
No 19
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.56 E-value=1.2e-07 Score=69.93 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=45.7
Q ss_pred CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 025829 166 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 216 (247)
Q Consensus 166 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~~ 216 (247)
.+|+++|+..|++..+| .|+|++|+++|+++|.++.++++.+.+..+.+-
T Consensus 31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~ 80 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGG 80 (103)
T ss_pred EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 68999999879999988 999999999999999999999999888777654
No 20
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.50 E-value=2.1e-08 Score=87.47 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhhhHHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCc---ccccHHHHHHHHHHHHHHHHHHHH
Q 025829 17 SFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPG---LHEGYQHFIYFVLLLFACMLLVES 91 (247)
Q Consensus 17 ~f~~er~v~~--RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~ 91 (247)
...+||.-=. |-+.+|. +...|+++|.+......++..++...+ ..| ++ ..++...++..++..++..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~--~~~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIP--FGNFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCc--ccchHHHHHHHHHHHHHHHH
Confidence 3455555433 3345555 899999999999999998888776664 444 43 33666666788888899999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHH
Q 025829 92 LMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV 171 (247)
Q Consensus 92 lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~ 171 (247)
+|.+++.++++...+..+..++..++...+|...|.+++|+ +.+ ++.++.|..|..+++....+.+
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~P~~~~~~~~~~~~~~~------------ 320 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQ-WISSFLPFYWFIQGLRNIIYGD------------ 320 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHH-HHHHHhhHHHHHHHHHHHHHhc------------
Confidence 99999999999999988888887777777788888889998 445 5888999999988885433211
Q ss_pred HhhhhCcccCccchhhHHHHHHHHHHHHHHHH
Q 025829 172 LRDKWQLQMGYSKWVDLAILFGMVVFYRLVFL 203 (247)
Q Consensus 172 L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~ 203 (247)
.. +.+.++++++++.+++.+++.
T Consensus 321 --------~~-~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 321 --------WS-EIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp --------------------------------
T ss_pred --------HH-HHHHHHHHHHHHHHHHHHHHh
Confidence 11 256788888888887776664
No 21
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.46 E-value=9.5e-06 Score=68.89 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhh--hhhhhccCcc---cccHHHHHHHHHHHHHHHHHH
Q 025829 23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIP--GAIVYYLPGL---HEGYQHFIYFVLLLFACMLLV 89 (247)
Q Consensus 23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~--~~i~y~~~g~---~~~~~~f~~~~l~~~l~~~~~ 89 (247)
..+-|||++|+. +.+.++++|.++......+..+.. ........|. +.+.+.+....+..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456699999985 789999999999876544433211 1111111222 124455555556666777788
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CcccccccccccCHHHHHHHHHHHHhhCCCccCCCCC
Q 025829 90 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD 167 (247)
Q Consensus 90 ~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i--P~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~ 167 (247)
.++|.++|++.+++..|..++..+...+.+ |... ..++ |+ |..|+.++||.+|..+... |
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~~--~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~~-----g-------- 212 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLFYF--GFDG-LASLLWGG--SAYTISELGLSYHYESISR-----G-------- 212 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHH--HHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHHc-----C--------
Confidence 999999999999988887666554333322 2211 2334 54 5667999999888765441 1
Q ss_pred HHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 025829 168 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 208 (247)
Q Consensus 168 g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~ 208 (247)
.. .+.++...+.+++++..++...++.
T Consensus 213 -------------~i-~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 213 -------------VI-DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------------cc-cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 01 2466777778887787777776554
No 22
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=0.00016 Score=62.09 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=117.1
Q ss_pred hhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025829 16 PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 95 (247)
Q Consensus 16 ~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~ 95 (247)
.++.....+..|-+ .++..+.+++++.+.....+..++....+-+..+. + ..++........+..+.+.++|.+
T Consensus 91 ~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~-~-s~~~l~~~~~l~~l~l~~~g~~l~ 164 (263)
T COG1682 91 GSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVE-P-SWHWLLLLPALLLLILFSVGLGLI 164 (263)
T ss_pred HHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443222 38889999999999988777776655555554444 3 455666666777778888889999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhh
Q 025829 96 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDK 175 (247)
Q Consensus 96 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~ 175 (247)
+|.++--..--..+.+.+..+++..+|.+.|.+.+|+ .+++ +.++||+.|.+|......+.+...
T Consensus 165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~------------- 229 (263)
T COG1682 165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP------------- 229 (263)
T ss_pred HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc-------------
Confidence 9888766555556777778888899999999999998 4664 999999999999998777654321
Q ss_pred hCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025829 176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 176 ~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~ 211 (247)
.+.+....+++.++..+++.+..++.+|
T Consensus 230 --------~~~~~~~~~~~~li~l~vg~~~~~~~~~ 257 (263)
T COG1682 230 --------DLHLLVYILLLTLILLFVGLLLFRKFRK 257 (263)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334444455555566677776665444
No 23
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.90 E-value=0.0005 Score=58.77 Aligned_cols=169 Identities=16% Similarity=0.229 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCC--------CchHHHHHHHHHHHhhHHHH---HHHhhhh---hhhccCcccccHHHHHHHHHHHHHHHH
Q 025829 22 MKVFERERLNGH--------YGATAFVFGNTFSALPYLAL---ISLIPGA---IVYYLPGLHEGYQHFIYFVLLLFACML 87 (247)
Q Consensus 22 r~v~~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~---~~~i~~~---i~y~~~g~~~~~~~f~~~~l~~~l~~~ 87 (247)
-..+-+|+++|+ ++...++++|.+......++ ...+... ......|.+.+..++....+......+
T Consensus 87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 346678888887 48999999999999887432 2211111 111123444455555544443333333
Q ss_pred ---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--ccccccCHHHHHHHHHHHHhhCCCc
Q 025829 88 ---LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLK 161 (247)
Q Consensus 88 ---~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~iP~~~w~--~wl~~isp~~y~~~~l~~~~f~~~~ 161 (247)
+..+++.++|++.++...|...+..+............ ..++.....|. ..+.+++|..+. +.+.....++..
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~ 245 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGGGF 245 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhcccc
Confidence 46899999999999888888877766555533333332 21222110011 114667776543 222222221110
Q ss_pred cCCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 025829 162 FDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV 209 (247)
Q Consensus 162 ~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~ 209 (247)
. + ...|.+++.++++.+++..+++..+++|
T Consensus 246 ~----------------~--~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 246 V----------------W--LSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred c----------------h--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0 1267889999999999999999766544
No 24
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.90 E-value=0.0013 Score=56.69 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL 160 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~ 160 (247)
..++..+.+.++|+++|++..-..-...+...+..+++..||.+.+.+.+|+ .++ ++-+.||+.+.+|+.....+++.
T Consensus 154 ~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~-~il~~NPl~~~ie~~R~~~~~~~ 231 (264)
T PRK15176 154 GMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLL-SIFSWNPLLHANEIVREGMFEGY 231 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHH-HHHHHCcHHHHHHHHHHHHhcCc
Confidence 3444566677888888776444333444566777888889999999999998 345 48899999999999988777542
Q ss_pred ccCCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829 161 KFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 161 ~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
. ..+.+...++++.++..+++.+..|+.+
T Consensus 232 ~---------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 260 (264)
T PRK15176 232 H---------------------SLYLEPFYPLAFSATLFLAGLIFHLICD 260 (264)
T ss_pred C---------------------ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0123446667777777777877766544
No 25
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=97.45 E-value=0.00028 Score=47.22 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=40.3
Q ss_pred CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829 166 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 213 (247)
Q Consensus 166 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~ 213 (247)
+-|+++|+.+.-+.++++.|..+++|++++++|+++..++|.+.+...
T Consensus 11 tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 11 TLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred cHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 679999999433444557899999999999999999999999988653
No 26
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.12 E-value=0.0086 Score=54.33 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccc--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 025829 35 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHE--GY--QHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG 110 (247)
Q Consensus 35 ~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 110 (247)
++..+++-|.+......++.+++++.+. +..+.+. .. +.|..+|...++.....-...-.+.++.+.+- +.+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence 8889999999999999999999998877 4555433 22 45787777766654443222222233332222 3333
Q ss_pred HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829 111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 190 (247)
Q Consensus 111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 190 (247)
.+..+++.+.+ .+.|.+-.|. |+|| .+=+ |++.+++++....|++.+ .+ ..+++++
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~-------------------~~-lg~n~gi 372 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK-------------------GQ-LGRNYGI 372 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc-------------------cc-ccchHHH
Confidence 34455555666 5568889998 7885 5555 999999999888664422 22 7789999
Q ss_pred HHHHHHHH
Q 025829 191 LFGMVVFY 198 (247)
Q Consensus 191 L~~~~i~f 198 (247)
|++|.++-
T Consensus 373 l~aw~~v~ 380 (382)
T PF12051_consen 373 LFAWIVVN 380 (382)
T ss_pred HHHHHHHH
Confidence 99998753
No 27
>COG1511 Predicted membrane protein [Function unknown]
Probab=97.04 E-value=0.014 Score=57.66 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=105.3
Q ss_pred HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 025829 29 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII 108 (247)
Q Consensus 29 ~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~ 108 (247)
...+.+....+++++.+..+-....+..+-...-+++.|.... ..+. +++..+.+.+++..+-..+..++. ..+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~-~~~~-~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK-SPLL-LVLFAIFSSVAFMIIIYLLVSLFG--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC-chhH-HHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence 6777788999999999999999999998888888888887543 2333 333333444444444444444444 45566
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhH
Q 025829 109 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL 188 (247)
Q Consensus 109 ~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~ 188 (247)
+..++.+++...+|-..|.+..|. +.+. +...-|++|++..+.-.. .+...+. .|.++
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------~~~~~~~-~~~~~ 743 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------GGPIPSN-LWSGL 743 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------ccCchHH-HhhhH
Confidence 777788888999999999999998 6665 999999999977764221 1222233 67888
Q ss_pred HHHHHHHHHHHHHHHH
Q 025829 189 AILFGMVVFYRLVFLG 204 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~ 204 (247)
.++.++.++|.+...+
T Consensus 744 ~~~~~~~i~~~~~~~~ 759 (780)
T COG1511 744 LALIGFLILFIIGGLF 759 (780)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877764433
No 28
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=96.84 E-value=0.042 Score=47.14 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=113.0
Q ss_pred HHHHHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhh--h-hhhccCcccc---cHHHHHHHHHHHHHHHHH
Q 025829 23 KVFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG--A-IVYYLPGLHE---GYQHFIYFVLLLFACMLL 88 (247)
Q Consensus 23 ~v~~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~~~~i~~--~-i~y~~~g~~~---~~~~f~~~~l~~~l~~~~ 88 (247)
.++-+|+++|+ +++..-++||.+.......+..++.. . ......|... +......+.....+....
T Consensus 81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (278)
T COG1277 81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV 160 (278)
T ss_pred chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 45668888888 47889999999998877666655554 1 2333334333 223456677778888888
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccC------CCCCCcccccccccccCHHHHHHHHHHHHhhCC-Cc
Q 025829 89 VESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRL------PNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG-LK 161 (247)
Q Consensus 89 ~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~-~~ 161 (247)
..+.+.+++...++...+..++........+..+.... ...-| ....+...+|.++..+......... .+
T Consensus 161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (278)
T COG1277 161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQSGFS 237 (278)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhccccccc
Confidence 89999999999999988888777766665554444322 11111 1122778889998888776544421 00
Q ss_pred cCCCCCHHHHHhhhhCccc-CccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829 162 FDNNLDGEQVLRDKWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 162 ~~c~~~g~~~L~~~~~~~~-~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
- ++ .+... ....|.++.+++++.+++..++++.+++++
T Consensus 238 ~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 238 D----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred c----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 00 11111 112678899999999999999998777654
No 29
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.81 E-value=0.12 Score=56.30 Aligned_cols=151 Identities=9% Similarity=0.081 Sum_probs=97.4
Q ss_pred HhHHHHHHhhhcchhhhhHHHHHHHHHh--CCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829 3 VASYLTFMTIGGFPSFVEDMKVFERERL--NGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL 80 (247)
Q Consensus 3 ~~~~~~~~~~~~i~~f~~er~v~~RE~~--~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l 80 (247)
+++...+.....+.....||..=.||.- =|+ +.+.|++|+.+..+...++..++.+++... ..+ ....++...++
T Consensus 659 ~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl 735 (2272)
T TIGR01257 659 MVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFL 735 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHH
Confidence 3444444555566667788888788844 355 788999999999887776665554443322 111 23345566677
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccc-ccCCCCCCcccccccccccCHHHHHHHHHHHHhh
Q 025829 81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGF-FRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 157 (247)
Q Consensus 81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~-~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f 157 (247)
..+++.+....++.++|+++.+...|..++.++.....+--.+ +.-.+.++. ...+.+.-+||.-.++..-....+
T Consensus 736 ~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~~~i~~~ 812 (2272)
T TIGR01257 736 FLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGTEYLVRF 812 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888899999999999999999999988876655442221 112234443 123336777787776655444433
No 30
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=95.89 E-value=0.93 Score=38.45 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhh-----ccCcccccHHHHHHHHHHHHHHHHHHH
Q 025829 24 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVY-----YLPGLHEGYQHFIYFVLLLFACMLLVE 90 (247)
Q Consensus 24 v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~~~l~~~~~~ 90 (247)
+..+|+++|.| +...+++||.+.-....++..++...+.. ...+-+.+...+....+.+++..+...
T Consensus 67 ~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~ 146 (248)
T TIGR03733 67 VVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLY 146 (248)
T ss_pred HHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566666665 68899999999887776665553222221 111223344566777777888888899
Q ss_pred HHHHHHHHhccc
Q 025829 91 SLMMIVASLVPN 102 (247)
Q Consensus 91 ~lg~~is~~~~~ 102 (247)
.+.+.++....+
T Consensus 147 ~l~l~ls~~~g~ 158 (248)
T TIGR03733 147 IIHLFVSFAFGM 158 (248)
T ss_pred HHHHHHHHHhCC
Confidence 999999988875
No 31
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=95.81 E-value=0.096 Score=43.68 Aligned_cols=94 Identities=19% Similarity=0.151 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829 22 MKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM 93 (247)
Q Consensus 22 r~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg 93 (247)
.+.|.+|+++|.. ++...+++|.+.......+..++...+...+.|.+ ..+...+.+.+.+....-...|
T Consensus 65 ~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~ig 142 (215)
T PF03379_consen 65 NRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIG 142 (215)
T ss_pred hHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHH
Confidence 4569999999983 57789999999998887777666666666666764 3455666666777777777888
Q ss_pred HHHHHhccchHHHHHHHHHHHHHH
Q 025829 94 MIVASLVPNYLTGIITGAGIQGLM 117 (247)
Q Consensus 94 ~~is~~~~~~~~a~~~~~~~~~~~ 117 (247)
-+.+++.-+......+.+++..|+
T Consensus 143 tl~aal~~~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 143 TLLAALAAGARGREILLPLLLLPL 166 (215)
T ss_pred HHHHHHHHhccccCHHHHHHHHHH
Confidence 888777554444445555554444
No 32
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.41 E-value=0.34 Score=41.04 Aligned_cols=162 Identities=15% Similarity=0.051 Sum_probs=91.8
Q ss_pred HHHHHhCCCC-----chHHHHHHHHHHHhhHHHHHHHhhh---hhhhccCcc----cccHHHHHHHHHHHHHHHHHHHHH
Q 025829 25 FERERLNGHY-----GATAFVFGNTFSALPYLALISLIPG---AIVYYLPGL----HEGYQHFIYFVLLLFACMLLVESL 92 (247)
Q Consensus 25 ~~RE~~~g~Y-----~~~~y~la~~l~~ip~~~~~~~i~~---~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~~~~l 92 (247)
|.||.++|.- +|..|...+...+.+......+-+. +..+.+.+- -++......+.+.+.+....--..
T Consensus 84 f~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i 163 (268)
T COG4587 84 FEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLI 163 (268)
T ss_pred HHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666664 5667777766666554443322111 112222211 112333333333333332233334
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHH
Q 025829 93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL 172 (247)
Q Consensus 93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L 172 (247)
...+++.+=-.+.|+.+.........+.||.+.|.+-.|+ |..-+--..|+-|.+..=+....
T Consensus 164 ~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P~~llv--------------- 226 (268)
T COG4587 164 QFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTPVMLLV--------------- 226 (268)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccHHHHHh---------------
Confidence 4444444434556778888888899999999999999999 54435556677776543222111
Q ss_pred hhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHH
Q 025829 173 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIK 207 (247)
Q Consensus 173 ~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~ 207 (247)
.+ .+.+ +.++++++.++|..++..+.-...|
T Consensus 227 -Gk--~s~~-~il~al~v~~~Wl~im~~l~~~lWr 257 (268)
T COG4587 227 -GK--YSGA-QILKALLVQIGWLLIMWLLSRWLWR 257 (268)
T ss_pred -cc--ccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1222 3788999999998888777766544
No 33
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=93.61 E-value=0.75 Score=38.25 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 025829 21 DMKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 92 (247)
Q Consensus 21 er~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l 92 (247)
-.+.|.+|+++|.. +....+++|.++......+.-.+...+.-.+.|++. .+.....+.+.+.+..-...
T Consensus 61 l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~i 138 (211)
T TIGR01190 61 LDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFL 138 (211)
T ss_pred hhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHH
Confidence 45688999999974 788999999999987776666666555555777653 33455666677777777777
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHH
Q 025829 93 MMIVASLVPNYLTGIITGAGIQGLM 117 (247)
Q Consensus 93 g~~is~~~~~~~~a~~~~~~~~~~~ 117 (247)
|-+.+++.-+......+.+++..|+
T Consensus 139 gtl~aALt~g~r~~~~Ll~lL~lPl 163 (211)
T TIGR01190 139 GAIGAALTVGLKRGGLLLSLLVLPL 163 (211)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHH
Confidence 7777777554333333444443333
No 34
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=93.52 E-value=3.8 Score=34.10 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHHHHhCCCC--------chHHHHHHHHHHHh-hHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829 23 KVFERERLNGHY--------GATAFVFGNTFSAL-PYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM 93 (247)
Q Consensus 23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~i-p~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg 93 (247)
.-+.++.++|.. +...+.+.+-+..- ...++.+++.........+.+.+..++..+.+.+.+......++.
T Consensus 52 ~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~ 131 (229)
T PF06182_consen 52 WEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIF 131 (229)
T ss_pred HHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777774 55555555555432 223333333333333345666677777777777777777777777
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHH
Q 025829 94 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 152 (247)
Q Consensus 94 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l 152 (247)
.+++..+=-......+. .....+++|...|.+-.|+ +.+..+.++.|..+....=
T Consensus 132 ~~~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P 186 (229)
T PF06182_consen 132 FIIGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVP 186 (229)
T ss_pred HHHHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHH
Confidence 76665532222112222 3334458999999999998 4555466668888775443
No 35
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=92.45 E-value=2.2 Score=34.15 Aligned_cols=91 Identities=25% Similarity=0.352 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhh---ccCcc-cccHHH----HHHHHHHHHHHH
Q 025829 23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVY---YLPGL-HEGYQH----FIYFVLLLFACM 86 (247)
Q Consensus 23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y---~~~g~-~~~~~~----f~~~~l~~~l~~ 86 (247)
..+.+|+++|++ +...++.+|.++.....++..++...+.+ .+.+. +.+... .....+...+..
T Consensus 68 ~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
T PF12730_consen 68 LLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLS 147 (232)
T ss_pred HHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHH
Confidence 356788888874 78999999999998777666555333322 22221 222222 223333444444
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHH
Q 025829 87 LLVESLMMIVASLVPNYLTGIITGAGIQ 114 (247)
Q Consensus 87 ~~~~~lg~~is~~~~~~~~a~~~~~~~~ 114 (247)
.....+ .+++...+|...+..++.+..
T Consensus 148 ~~~~~~-~~i~~~~~~~~~~i~~~~~~~ 174 (232)
T PF12730_consen 148 LFISLL-LFISSLFRNSIVAIIISILLF 174 (232)
T ss_pred HHHHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence 445555 778888888666655444433
No 36
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=91.65 E-value=2.4 Score=46.80 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=66.4
Q ss_pred hhHHHHHHH--HHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccC--cccccHHHHHHHHHHHHHHHHHHHHHHH
Q 025829 19 VEDMKVFER--ERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLP--GLHEGYQHFIYFVLLLFACMLLVESLMM 94 (247)
Q Consensus 19 ~~er~v~~R--E~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~--g~~~~~~~f~~~~l~~~l~~~~~~~lg~ 94 (247)
..||.-=.| ..-+|. ++.+|.++..+.++..-++..+++.++.+..- ++. +..++...+++++++.++...+.+
T Consensus 1702 V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip~tY 1779 (2272)
T TIGR01257 1702 IQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIPMMY 1779 (2272)
T ss_pred ehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 445544332 356677 89999999999999988887777665554322 221 234566667788889999999999
Q ss_pred HHHHhccchHHHHHHHHH
Q 025829 95 IVASLVPNYLTGIITGAG 112 (247)
Q Consensus 95 ~is~~~~~~~~a~~~~~~ 112 (247)
++|.+++++..|......
T Consensus 1780 l~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257 1780 PASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred HHHHhhCCchhHHHHHHH
Confidence 999999999888655443
No 37
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.44 E-value=11 Score=34.49 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhhhh---------ccCc--ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Q 025829 34 YGATAFVFGNTFSALPYLALISLIPGAIVY---------YLPG--LHEGYQHFIYFVLLLFACML-LVESLMMIVASLVP 101 (247)
Q Consensus 34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~~-~~~~lg~~is~~~~ 101 (247)
-++..++.+|++.-....+.+..++....+ ...+ +......+..+.+...+..+ ...+++.++++.+.
T Consensus 227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~ 306 (407)
T COG1668 227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG 306 (407)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999988888666655552 1111 11122233344444444433 44558899999999
Q ss_pred chHHHHHHHH
Q 025829 102 NYLTGIITGA 111 (247)
Q Consensus 102 ~~~~a~~~~~ 111 (247)
+.+.|+....
T Consensus 307 ~~k~aq~~~~ 316 (407)
T COG1668 307 SIKEAQTLIS 316 (407)
T ss_pred CHHHHHHHhh
Confidence 9888887776
No 38
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=88.97 E-value=13 Score=31.37 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhc---cCccc-ccHHHHHHHHHHHHHHHHHHHHH
Q 025829 25 FERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLH-EGYQHFIYFVLLLFACMLLVESL 92 (247)
Q Consensus 25 ~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~---~~g~~-~~~~~f~~~~l~~~l~~~~~~~l 92 (247)
..+|+++|.| +....++||.+.-....++..++.....+. ..|.. .+...+....+..++..+....+
T Consensus 63 ~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l 142 (241)
T TIGR03732 63 HKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPL 142 (241)
T ss_pred HHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777765 678999999998877766665554422221 22321 23334555555566666666677
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHH
Q 025829 93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF 153 (247)
Q Consensus 93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~ 153 (247)
-..++... +...+..++ ....+..|.+...+ + .| ++.|..|....+.
T Consensus 143 ~l~ls~~~-g~~~si~ig----~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~ 189 (241)
T TIGR03732 143 CLFLARKF-GMFVSILVN----LVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC 189 (241)
T ss_pred HHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence 77776444 222222222 21233344443221 2 23 4678888887774
No 39
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.84 E-value=15 Score=30.85 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred HHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhhhhhhc---cCcccccHH--HHHHHHHHHHHHHHHHHHH
Q 025829 26 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLHEGYQ--HFIYFVLLLFACMLLVESL 92 (247)
Q Consensus 26 ~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~---~~g~~~~~~--~f~~~~l~~~l~~~~~~~l 92 (247)
.-|+++|. ++.+-.|+||+..-+....+..++.....+. ..|...+.. .++......++.+.--.++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56777777 4788999999999888777776655444443 334433332 2334444455555555667
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHH
Q 025829 93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHK 146 (247)
Q Consensus 93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~ 146 (247)
=...+...+|...|..++... +..+ ....++.|+ | +-|-+|..
T Consensus 156 Q~wLsm~fknf~~al~igI~l--~a~f----va~~~s~~~--~---~PW~~pi~ 198 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL--PALF----VASAESLPV--W---LPWASPIL 198 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH--HHHH----HHhccccCc--c---ccchhhhh
Confidence 777888888888888777766 2221 123456776 3 66666765
No 40
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=5.8 Score=32.86 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829 22 MKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM 93 (247)
Q Consensus 22 r~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg 93 (247)
-..|.+|++||.- ....-+++|+++.-..+.+--.+..-+.+.+.+++ ...+....+.+.+.+-.-+.+|
T Consensus 68 ~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~g 145 (221)
T COG2386 68 ERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLG 145 (221)
T ss_pred HHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHH
Confidence 3579999999984 56778899999998877777777777778888875 4556666666666666666666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHH
Q 025829 94 MIVASLVPNYLTGIITGAGIQGLM 117 (247)
Q Consensus 94 ~~is~~~~~~~~a~~~~~~~~~~~ 117 (247)
-.-+++.-+......+.+++..|.
T Consensus 146 a~gaALtv~lrrgglLl~vlvlPl 169 (221)
T COG2386 146 AVGAALTVGLRRGGLLLSVLVLPL 169 (221)
T ss_pred HHHHHHHhcCccCCchhhHHHHHH
Confidence 666666544444444444444444
No 41
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=78.82 E-value=56 Score=30.35 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHH---hhhhhhhccCcc--cccHHHHHHHHHHHHHHHHHHHH
Q 025829 17 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISL---IPGAIVYYLPGL--HEGYQHFIYFVLLLFACMLLVES 91 (247)
Q Consensus 17 ~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~---i~~~i~y~~~g~--~~~~~~f~~~~l~~~l~~~~~~~ 91 (247)
...+||..-...-.++-.+.+.-+.+.....+....+..+ .-..+.|.|.+- ..+.......-++.....+...+
T Consensus 371 l~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ 450 (536)
T COG3559 371 LHGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLA 450 (536)
T ss_pred HhhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHH
Confidence 3456665544443444445555555554444433333332 223345554332 11222223222333334444455
Q ss_pred HHHHHHHhccchHHHHHHHHH-HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHH
Q 025829 92 LMMIVASLVPNYLTGIITGAG-IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQ 170 (247)
Q Consensus 92 lg~~is~~~~~~~~a~~~~~~-~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~ 170 (247)
+...+.-+.|...--. -..+ ........+| .-++|+ | +-.+||+.|.= .
T Consensus 451 ia~ll~GLaPr~t~la-Wlyl~~~~fvtyLg~----Llslpe--w---l~nlSp~~hip---------~----------- 500 (536)
T COG3559 451 IAVLLFGLAPRFTPLA-WLYLIVGFFVTYLGG----LLSLPE--W---LLNLSPFAHIP---------R----------- 500 (536)
T ss_pred HHHHHhccchhhhhhH-HHHHHHHHHHHHHHH----hcccHH--H---HhcCCccccCc---------c-----------
Confidence 5555555555433222 2222 2233333444 347887 4 77888876540 0
Q ss_pred HHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829 171 VLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 171 ~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
.+.+ |. --..+..+.++.+....+++.+.|+|+
T Consensus 501 -----lpve-d~-n~~pll~l~ii~vaL~~lGf~~yrRRd 533 (536)
T COG3559 501 -----LPVE-DF-NAVPLLWLLIIDVALITLGFMAYRRRD 533 (536)
T ss_pred -----CCcc-cc-chHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 1111 11 234566777778888888888877654
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.61 E-value=5.4 Score=30.17 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 025829 185 WVDLAILFGMVVFYRLVFLGI 205 (247)
Q Consensus 185 ~~~~~iL~~~~i~f~~l~~~~ 205 (247)
+..++++.+++....+++|++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 445555555543333334433
No 43
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=71.12 E-value=40 Score=34.24 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=70.0
Q ss_pred hhhHHHHHHH--HHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025829 18 FVEDMKVFER--ERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 95 (247)
Q Consensus 18 f~~er~v~~R--E~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~ 95 (247)
...||..-.| +.-+|+ ++++|.++..+.+....++..++...+.+..- + ....+.....+...+.......+.++
T Consensus 319 li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~-~-~~~~~~~~~~~~~~l~~~s~i~l~y~ 395 (885)
T KOG0059|consen 319 LILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIFG-F-FAGNNTVIILLLLLLYIRSAIPLTYI 395 (885)
T ss_pred HHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhheee-c-ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445554443 366777 89999999999999988888777665555432 2 34455666677777888888999999
Q ss_pred HHHhccchHHHHHHHHHHHHHH
Q 025829 96 VASLVPNYLTGIITGAGIQGLM 117 (247)
Q Consensus 96 is~~~~~~~~a~~~~~~~~~~~ 117 (247)
.+.+++.+..+.....+.....
T Consensus 396 ~s~~f~~~~~~~v~~~i~~~~s 417 (885)
T KOG0059|consen 396 LSFIFSKESTASVILSIYNLIS 417 (885)
T ss_pred HHHHhcCCcCceeehhhHHHHH
Confidence 9999999888877766654444
No 44
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=68.05 E-value=12 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025829 189 AILFGMVVFYRLVFLGII 206 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~~l 206 (247)
..++|+.++|.+|..+.+
T Consensus 10 l~v~GM~~VF~fL~lLi~ 27 (82)
T TIGR01195 10 LTVLGMGIVFLFLSLLIY 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777766666554
No 45
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=67.57 E-value=8.1 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 190 ILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 190 iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
+++.++++..+....+||+..+.|.
T Consensus 7 lIIviVlgvIigNia~LK~sAk~K~ 31 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAKMKF 31 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCC
Confidence 3344445566778888898887544
No 46
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=65.45 E-value=16 Score=24.97 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025829 190 ILFGMVVFYRLVFLGI 205 (247)
Q Consensus 190 iL~~~~i~f~~l~~~~ 205 (247)
.++++.++|.+|..+.
T Consensus 8 ~i~Gm~iVF~~L~lL~ 23 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLI 23 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555444444
No 47
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.89 E-value=16 Score=27.66 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHH
Q 025829 185 WVDLAILFGMVV 196 (247)
Q Consensus 185 ~~~~~iL~~~~i 196 (247)
|.-+++++++++
T Consensus 2 W~l~~iii~~i~ 13 (130)
T PF12273_consen 2 WVLFAIIIVAIL 13 (130)
T ss_pred eeeHHHHHHHHH
Confidence 444444444433
No 48
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.92 E-value=30 Score=24.77 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=11.4
Q ss_pred CCCcccccccccccCHHHHHH
Q 025829 129 DLPHPFWKYPLYYIAFHKYAY 149 (247)
Q Consensus 129 ~iP~~~w~~wl~~isp~~y~~ 149 (247)
.+|+ |-| ... +|++|+-
T Consensus 67 ~LPp--wP~-y~r-n~LkW~~ 83 (101)
T KOG4112|consen 67 TLPP--WPW-YRR-NPLKWAQ 83 (101)
T ss_pred cCCC--chh-hhc-CcccccC
Confidence 5787 764 444 8888863
No 49
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=50.68 E-value=32 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025829 189 AILFGMVVFYRLVFLG 204 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~ 204 (247)
.+|+.+++++.+++.+
T Consensus 17 ~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 17 LVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 50
>PRK11246 hypothetical protein; Provisional
Probab=48.67 E-value=32 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 025829 184 KWVDLAILFGMVVFYRLVFLG 204 (247)
Q Consensus 184 ~~~~~~iL~~~~i~f~~l~~~ 204 (247)
...-+.+++++.+++.+.-.+
T Consensus 163 ~~~r~Mll~al~iG~lL~~~l 183 (218)
T PRK11246 163 NILRLMLLLALAIGIVLTRTL 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877777544433
No 51
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.80 E-value=21 Score=31.35 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhccccc
Q 025829 197 FYRLVFLGIIKTVEKMKPV 215 (247)
Q Consensus 197 ~f~~l~~~~l~~~~~~~~~ 215 (247)
+..++-|+.||||+++|..
T Consensus 270 LIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 270 LIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3456677788888876653
No 52
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=46.09 E-value=54 Score=24.14 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 025829 189 AILFGMVVFYRLVFLGIIKTVE 210 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~~l~~~~ 210 (247)
++++.+.+++.++++...+.+.
T Consensus 8 ~llLll~l~asl~~wr~~~rq~ 29 (107)
T PF15330_consen 8 ALLLLLSLAASLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444555555555444333
No 53
>PTZ00046 rifin; Provisional
Probab=38.04 E-value=38 Score=30.51 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=19.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 025829 184 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKPV 215 (247)
Q Consensus 184 ~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~ 215 (247)
+-..+.+++++.+ -.++-|+.||||+|.|.+
T Consensus 317 IiaSiiAIvVIVL-IMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 317 IIASIVAIVVIVL-IMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhcchhH
Confidence 3344444444444 347778889999987763
No 54
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=37.73 E-value=38 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 025829 184 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKPV 215 (247)
Q Consensus 184 ~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~ 215 (247)
+-..+.+++++.++ .++-|+.||||+|+|.+
T Consensus 312 IiaSiIAIvvIVLI-MvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 312 IIASIIAILIIVLI-MVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhcchhH
Confidence 34444444444443 47778889999987763
No 55
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.08 E-value=28 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 025829 185 WVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 216 (247)
Q Consensus 185 ~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~~ 216 (247)
-..+.+++++.+++.+...+.+...-+.|...
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~ 50 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSRLRLRRRI 50 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555554444444433
No 56
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=35.69 E-value=72 Score=20.81 Aligned_cols=19 Identities=11% Similarity=0.513 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025829 188 LAILFGMVVFYRLVFLGII 206 (247)
Q Consensus 188 ~~iL~~~~i~f~~l~~~~l 206 (247)
+..|+.+.++|--+.|.+.
T Consensus 12 iVLLISfiIlfgRl~Y~~I 30 (59)
T PF11119_consen 12 IVLLISFIILFGRLIYSAI 30 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666653444443
No 57
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=35.56 E-value=3.6e+02 Score=24.96 Aligned_cols=30 Identities=10% Similarity=0.360 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829 184 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 213 (247)
Q Consensus 184 ~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~ 213 (247)
-+.+....++..+.+..+.|.+.|..++.+
T Consensus 281 ~~~~~~~iig~i~~~~~v~yss~ra~~~s~ 310 (429)
T PF03348_consen 281 SWNTWQSIIGLIFTFVSVLYSSFRASSSSQ 310 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHhccccccccc
Confidence 456677888888888888888887766655
No 58
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.86 E-value=32 Score=26.03 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 025829 191 LFGMVVFYRLVFLG 204 (247)
Q Consensus 191 L~~~~i~f~~l~~~ 204 (247)
+++++|++.++.++
T Consensus 4 l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 4 LFAIIIVAILLFLF 17 (130)
T ss_pred eHHHHHHHHHHHHH
Confidence 34444444433333
No 59
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.75 E-value=96 Score=21.98 Aligned_cols=29 Identities=7% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccch
Q 025829 188 LAILFGMVVFYRLVFLGIIKTVEKMKPVV 216 (247)
Q Consensus 188 ~~iL~~~~i~f~~l~~~~l~~~~~~~~~~ 216 (247)
+++..++.++..++.+.|=+.|+|.||.+
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 45555665666677777777777666543
No 60
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=33.72 E-value=4.1e+02 Score=24.95 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHH
Q 025829 78 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQG 151 (247)
Q Consensus 78 ~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~ 151 (247)
|-+.+-...+...++..+++.++++.....-.+-.......+. .-..|..+ .. +.|+||+-|....
T Consensus 168 fgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~llG~aflv----Rmi~Dvss---~~-L~WfsPlgW~~~~ 233 (536)
T COG3559 168 FGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFALLGTAFLV----RMIGDVSS---GT-LSWFSPLGWSLQV 233 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHH----HHHhcccc---cc-cccccCccceEEe
Confidence 4455566666677777777777655433222221111111110 01224443 11 8899999887543
No 61
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=33.07 E-value=87 Score=22.59 Aligned_cols=44 Identities=9% Similarity=-0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhhccccccccccccCCC
Q 025829 192 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPC 235 (247)
Q Consensus 192 ~~~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (247)
+-.+++..+=+.+++-+|.-+.-..+=...++++++...+||+.
T Consensus 49 If~Gi~lMlPAav~ivWR~a~~lap~l~~~~~~~~~~s~~~k~~ 92 (96)
T PF07214_consen 49 IFVGIGLMLPAAVNIVWRVAKGLAPLLIDRPPKSSSRSDREKKN 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHhhcCCCCccccchhhhcc
Confidence 33344555555555555544333222223333333334445443
No 62
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.08 E-value=55 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc
Q 025829 190 ILFGMVVFYRLVFLGIIKTVEKMKPV 215 (247)
Q Consensus 190 iL~~~~i~f~~l~~~~l~~~~~~~~~ 215 (247)
+++++++++ ++++++.|...+..+.
T Consensus 2 ~~i~lvvG~-iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGL-IIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHH-HHHHHHHHHhccchhh
Confidence 355566666 5555666666655443
No 63
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=19 Score=24.35 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=4.9
Q ss_pred CCCCCCcCcc
Q 025829 235 CATPPQEDKI 244 (247)
Q Consensus 235 ~~~~~~~~~~ 244 (247)
-+|+|.|.||
T Consensus 51 mGqKpSe~kI 60 (71)
T COG3763 51 MGQKPSEKKI 60 (71)
T ss_pred hCCCchHHHH
Confidence 3455555543
No 64
>COG4393 Predicted membrane protein [Function unknown]
Probab=29.38 E-value=4.2e+02 Score=23.81 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 025829 67 GLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG 106 (247)
Q Consensus 67 g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a 106 (247)
|..++.........++++..+++ .+|.++++-.|..+.-
T Consensus 20 g~~w~~~p~~~~~~vvwl~~L~~-~~g~~~~~y~pKsq~~ 58 (405)
T COG4393 20 GITWNKKPIFKSFFVVWLGFLFG-YFGFFIAAYFPKSQNL 58 (405)
T ss_pred cCCcccccchhHHHHHHHHHHHH-HHHHHHHHhcccccce
Confidence 33343333333344455555554 5677777776665533
No 65
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.97 E-value=3.6e+02 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=30.2
Q ss_pred HhHHHHHHhhhcchhhhhHHHHHHHH------HhCCCCchHHHHHHHH
Q 025829 3 VASYLTFMTIGGFPSFVEDMKVFERE------RLNGHYGATAFVFGNT 44 (247)
Q Consensus 3 ~~~~~~~~~~~~i~~f~~er~v~~RE------~~~g~Y~~~~y~la~~ 44 (247)
.+....+....+...+...-|.|.|| +++|.++..+|++.-.
T Consensus 262 ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~ 309 (466)
T KOG2532|consen 262 AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAI 309 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHH
Confidence 34444555566777778888888886 7888888888876555
No 66
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=28.92 E-value=89 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=5.5
Q ss_pred chhhHHHHHHHH
Q 025829 184 KWVDLAILFGMV 195 (247)
Q Consensus 184 ~~~~~~iL~~~~ 195 (247)
..+.+.+++++.
T Consensus 94 l~R~~~Vl~g~s 105 (163)
T PF06679_consen 94 LKRALYVLVGLS 105 (163)
T ss_pred hhhhHHHHHHHH
Confidence 344444444443
No 67
>PRK11677 hypothetical protein; Provisional
Probab=26.89 E-value=81 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 189 AILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
.++++++++. +++++..|+.++..+
T Consensus 5 ~a~i~livG~-iiG~~~~R~~~~~~~ 29 (134)
T PRK11677 5 YALIGLVVGI-IIGAVAMRFGNRKLR 29 (134)
T ss_pred HHHHHHHHHH-HHHHHHHhhccchhh
Confidence 4445555555 455555566554433
No 68
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=26.46 E-value=1.1e+02 Score=27.62 Aligned_cols=41 Identities=20% Similarity=0.003 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhccccchhhhhccccccccccccCCCCCCCC
Q 025829 200 LVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQ 240 (247)
Q Consensus 200 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (247)
+++++-+.+++-.||..+.-.+++||+++|--||+-+..++
T Consensus 72 ll~fl~~f~~~lrkP~n~~~~~~kp~~~t~~~q~~~~~~~~ 112 (429)
T COG5062 72 LLGFLFLFWRRLRKPVNPGNPSSKPKQSTDAPQDDEPYTSM 112 (429)
T ss_pred HHHHHHHHHHhccCCCCCCCcccCccccccCcccccccchh
Confidence 44444455666667776555566666777766665555443
No 69
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.74 E-value=70 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 190 ILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 190 iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
+|++-++.+ ++--+||..|+|+|+
T Consensus 63 VLVG~Gv~L-LLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 63 VLVGSGVAL-LLLSICLSIRDKRRR 86 (233)
T ss_pred ehhhHHHHH-HHHHHHHHHHHHHHH
Confidence 455555544 444577777777655
No 70
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.08 E-value=2.2e+02 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=10.4
Q ss_pred HHHHHHHHHhccchHHHHHHH
Q 025829 90 ESLMMIVASLVPNYLTGIITG 110 (247)
Q Consensus 90 ~~lg~~is~~~~~~~~a~~~~ 110 (247)
..+|.+++.+..|......+.
T Consensus 21 ~iisfi~Gy~~q~~~~~~~~~ 41 (76)
T PF06645_consen 21 AIISFIVGYITQSFSYTFYIY 41 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444333
No 71
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.51 E-value=1.3e+02 Score=18.46 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025829 188 LAILFGMVVFYRLVFLGIIK 207 (247)
Q Consensus 188 ~~iL~~~~i~f~~l~~~~l~ 207 (247)
...++.+.++|..+.+.+.+
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444554455444444443
No 72
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.44 E-value=85 Score=23.23 Aligned_cols=12 Identities=0% Similarity=-0.294 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q 025829 198 YRLVFLGIIKTV 209 (247)
Q Consensus 198 f~~l~~~~l~~~ 209 (247)
|.++.++..|-.
T Consensus 14 ~~i~yF~~iRPQ 25 (109)
T PRK05886 14 MGGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHHccHH
Confidence 333444444433
No 73
>COG3771 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=1.1e+02 Score=21.60 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhcc
Q 025829 185 WVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSV 222 (247)
Q Consensus 185 ~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~~~~~~~~ 222 (247)
.......+++++++.+.+.+-+|.+-+.++.-||+++.
T Consensus 44 Lla~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~ 81 (97)
T COG3771 44 LLATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRL 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888888888887777766666443
No 74
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=22.60 E-value=1.7e+02 Score=20.51 Aligned_cols=16 Identities=19% Similarity=0.359 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025829 191 LFGMVVFYRLVFLGII 206 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l 206 (247)
..+++++|.+|.+++.
T Consensus 15 vlGmg~VflfL~iLi~ 30 (84)
T COG3630 15 VLGMGFVFLFLSILIY 30 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555655555543
No 75
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.54 E-value=2.1e+02 Score=17.98 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025829 191 LFGMVVFYRLVFLGIIK 207 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l~ 207 (247)
++.+.+++.+++.....
T Consensus 6 iV~i~iv~~lLg~~I~~ 22 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICT 22 (50)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 76
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.45 E-value=1.7e+02 Score=25.93 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=24.3
Q ss_pred hCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhh
Q 025829 30 LNGHYGATAFVFGNTFSALPYLALISLIPGAIVY 63 (247)
Q Consensus 30 ~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y 63 (247)
+.|.|+..+-.++++..-+|+++...+.+..+.+
T Consensus 3 s~~iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~ 36 (318)
T PF12725_consen 3 SRGIYPVISKLLRRLFGWFPFSVGDILYYLLILF 36 (318)
T ss_pred cCcchHHHHHHHHHhccCcChhHHHHHHHHHHHH
Confidence 5678888888888888888887766555544443
No 77
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.35 E-value=2.1e+02 Score=21.66 Aligned_cols=15 Identities=20% Similarity=0.013 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhhc
Q 025829 197 FYRLVFLGIIKTVEK 211 (247)
Q Consensus 197 ~f~~l~~~~l~~~~~ 211 (247)
....+.++.+.....
T Consensus 96 ~~~G~~~i~l~~~~~ 110 (136)
T PF08507_consen 96 FLVGVIYIILGFFCP 110 (136)
T ss_pred HHHHHHHHHHHHHcC
Confidence 333344444444333
No 78
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.33 E-value=30 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025829 190 ILFGMVVFYRLVFLGIIK 207 (247)
Q Consensus 190 iL~~~~i~f~~l~~~~l~ 207 (247)
+.+++.++..+..+++-+
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 79
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.31 E-value=2.4e+02 Score=22.05 Aligned_cols=7 Identities=57% Similarity=0.895 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 025829 190 ILFGMVV 196 (247)
Q Consensus 190 iL~~~~i 196 (247)
+|+++.+
T Consensus 34 ILiaIvV 40 (189)
T PF05568_consen 34 ILIAIVV 40 (189)
T ss_pred HHHHHHH
Confidence 4444433
No 80
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=1.2e+02 Score=19.82 Aligned_cols=10 Identities=20% Similarity=-0.014 Sum_probs=4.9
Q ss_pred cccCCCCCCC
Q 025829 230 IMENPCATPP 239 (247)
Q Consensus 230 ~~~~~~~~~~ 239 (247)
.-+|+++|++
T Consensus 46 l~l~Dd~q~~ 55 (60)
T COG4736 46 LPLNDDAQDA 55 (60)
T ss_pred CCCCcchhhh
Confidence 3455555544
No 81
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.20 E-value=1.1e+02 Score=20.47 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 189 AILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
|.|++-.++.-+++++..+-..-++.
T Consensus 15 G~LIAvvLLLsIl~~lt~~ai~~Qq~ 40 (66)
T PF13179_consen 15 GMLIAVVLLLSILAFLTYWAIKVQQE 40 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444454555554444333333
No 82
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=1.8e+02 Score=19.85 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q 025829 191 LFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
|+.|.+...+++..++-+.-++|+
T Consensus 5 lltFg~Fllvi~gMsiG~I~krk~ 28 (77)
T COG2991 5 LLTFGIFLLVIAGMSIGYIFKRKS 28 (77)
T ss_pred HHHHHHHHHHHHHHhHhhheeccc
Confidence 344444444444455555555555
No 83
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.46 E-value=1.6e+02 Score=23.87 Aligned_cols=7 Identities=14% Similarity=-0.069 Sum_probs=3.4
Q ss_pred HHHHHhh
Q 025829 168 GEQVLRD 174 (247)
Q Consensus 168 g~~~L~~ 174 (247)
+.+.++.
T Consensus 9 ~~~~~~~ 15 (197)
T PF15179_consen 9 LLEWLEN 15 (197)
T ss_pred cccchhh
Confidence 3445555
No 84
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.45 E-value=3.4e+02 Score=20.58 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=4.8
Q ss_pred HHHHHhhh
Q 025829 168 GEQVLRDK 175 (247)
Q Consensus 168 g~~~L~~~ 175 (247)
+++.|++.
T Consensus 16 ~qE~LEem 23 (125)
T PF15048_consen 16 PQELLEEM 23 (125)
T ss_pred CHHHHHHH
Confidence 45666664
No 85
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.01 E-value=5.5e+02 Score=21.97 Aligned_cols=41 Identities=5% Similarity=-0.092 Sum_probs=22.5
Q ss_pred HHHHHHhcccccCCCCCCcccccccccc----cCHHHHHHHHHHHHhh
Q 025829 114 QGLMILGGGFFRLPNDLPHPFWKYPLYY----IAFHKYAYQGMFKNEF 157 (247)
Q Consensus 114 ~~~~~l~sG~~~~~~~iP~~~w~~wl~~----isp~~y~~~~l~~~~f 157 (247)
+.+..+++|.++-..++=. .-. ++. +..+.|+.-.+.....
T Consensus 54 f~p~amlgG~lW~~gN~~~-vpi--i~~iGLglg~liW~s~n~l~Gw~ 98 (254)
T PF07857_consen 54 FYPWAMLGGALWATGNILV-VPI--IKTIGLGLGMLIWGSVNCLTGWA 98 (254)
T ss_pred ceeHHHhhhhhhhcCceee-hhH--hhhhhhHHHHHHHHHHHHHHHHH
Confidence 5677788888876655332 110 333 3366676655554433
Done!