Query 025829
Match_columns 247
No_of_seqs 128 out of 1180
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h33_A LMO2059 protein; bilaye 23.5 1.2E+02 0.0039 22.0 4.7 20 140-159 43-62 (137)
2 2rdd_B UPF0092 membrane protei 21.9 57 0.002 18.1 2.1 7 201-207 16-22 (37)
3 2jln_A MHP1; hydantoin, transp 16.0 1.2E+02 0.0041 27.1 3.9 20 223-242 474-493 (501)
4 2nwl_A GLTPH, glutamate sympor 14.7 5.9E+02 0.02 22.1 8.6 65 37-101 42-108 (422)
5 1rzh_H Reaction center protein 13.3 3.3E+02 0.011 22.2 5.5 23 189-214 15-37 (260)
6 2eqg_A Tumor necrosis factor, 11.3 1.1E+02 0.0039 17.7 1.5 16 226-241 5-20 (49)
7 2l9u_A Receptor tyrosine-prote 11.2 2.3E+02 0.008 15.5 3.4 28 184-211 6-33 (40)
8 2wjn_H Reaction center protein 9.6 3.1E+02 0.011 22.4 4.1 15 186-200 12-26 (258)
9 3eff_K Voltage-gated potassium 9.1 69 0.0024 23.1 -0.0 112 106-234 8-119 (139)
10 4ev6_A Magnesium transport pro 8.3 5.3E+02 0.018 21.3 5.4 79 84-162 259-338 (339)
No 1
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=23.55 E-value=1.2e+02 Score=21.99 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=13.0
Q ss_pred cccCHHHHHHHHHHHHhhCC
Q 025829 140 YYIAFHKYAYQGMFKNEFEG 159 (247)
Q Consensus 140 ~~isp~~y~~~~l~~~~f~~ 159 (247)
.|..-+.|++..+...-|.|
T Consensus 43 ~~~~a~y~~~~T~tTvGyGD 62 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGD 62 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSS
T ss_pred CHHHHHHHHHHHHHcccCCC
Confidence 35667788888876554443
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.95 E-value=57 Score=18.07 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 025829 201 VFLGIIK 207 (247)
Q Consensus 201 l~~~~l~ 207 (247)
..++..|
T Consensus 16 fYFl~iR 22 (37)
T 2rdd_B 16 FYFMILR 22 (37)
T ss_dssp HHHHTHH
T ss_pred HHHHHhh
Confidence 3344333
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=16.04 E-value=1.2e+02 Score=27.14 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCCCcC
Q 025829 223 PMKQTTQIMENPCATPPQED 242 (247)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (247)
+++.+.|-.+|+.+||+.+.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (501)
T 2jln_A 474 PADESATANTKEQNQPAGGR 493 (501)
T ss_dssp --------------------
T ss_pred cccCCCccchhhcCCCCCCC
Confidence 55666666777777877553
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=14.69 E-value=5.9e+02 Score=22.13 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhccCccc-ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025829 37 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLH-EGYQHF-IYFVLLLFACMLLVESLMMIVASLVP 101 (247)
Q Consensus 37 ~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~-~~~~~f-~~~~l~~~l~~~~~~~lg~~is~~~~ 101 (247)
+--.+++....+...++.++++..+.--..+++ ...++. ........+....+..+|..++.+.+
T Consensus 42 ~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 42 YVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355678888889999999999999998888874 334453 33444455566667777777776654
No 5
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=13.30 E-value=3.3e+02 Score=22.22 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829 189 AILFGMVVFYRLVFLGIIKTVEKMKP 214 (247)
Q Consensus 189 ~iL~~~~i~f~~l~~~~l~~~~~~~~ 214 (247)
..|.+|++.| +.+.+..++.+|+
T Consensus 15 ~~l~~Fw~ff---a~Li~yL~~E~~R 37 (260)
T 1rzh_H 15 LAIYSFWIFL---AGLIYYLQTENMR 37 (260)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHTTS
T ss_pred HHHHHHHHHH---HHHHHHHhccccc
Confidence 4455555444 4444444544444
No 6
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=11.32 E-value=1.1e+02 Score=17.73 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.3
Q ss_pred cccccccCCCCCCCCc
Q 025829 226 QTTQIMENPCATPPQE 241 (247)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (247)
++-.-+|-+|+||-|-
T Consensus 5 ~qlSLm~vkCeTPnCp 20 (49)
T 2eqg_A 5 SSGSLMDVKCETPNCP 20 (49)
T ss_dssp CSSCCCSSBCSSTTCC
T ss_pred ccceeEEEeecCCCCC
Confidence 4455688999999874
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=11.22 E-value=2.3e+02 Score=15.51 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025829 184 KWVDLAILFGMVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 184 ~~~~~~iL~~~~i~f~~l~~~~l~~~~~ 211 (247)
....+.+..+..++|.+++--.+.++-+
T Consensus 6 l~malt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEccc
Confidence 3455667788888898888777777654
No 8
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=9.57 E-value=3.1e+02 Score=22.38 Aligned_cols=15 Identities=0% Similarity=0.062 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHH
Q 025829 186 VDLAILFGMVVFYRL 200 (247)
Q Consensus 186 ~~~~iL~~~~i~f~~ 200 (247)
..-.+|.+|++.|..
T Consensus 12 ~aq~~l~~Fw~ffa~ 26 (258)
T 2wjn_H 12 IAQLVWYAQWLVIWT 26 (258)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455555554433
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=9.09 E-value=69 Score=23.12 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccch
Q 025829 106 GIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKW 185 (247)
Q Consensus 106 a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~ 185 (247)
.......+.....+++..+.-.+.-.+ -...-.+...+.|++..+...-|.|. ...+......
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~--~~~~~~~~~a~yf~~~T~tTvGyGd~---------------~P~t~~~r~~ 70 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWSVETATTVGYGDL---------------YPVTLWGRLV 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCT--TCCCCCHHHHHHHHHHHHTTCCCSSS---------------CCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CcccCCHHHHHHHHheeeecccCCCC---------------cCCCcCHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhccccccccccccCC
Q 025829 186 VDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENP 234 (247)
Q Consensus 186 ~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (247)
..+.+++++.+.-.+++.+.-...++.++..++...+.++......+++
T Consensus 71 ~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 71 AVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.31 E-value=5.3e+02 Score=21.32 Aligned_cols=79 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccc-cCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCcc
Q 025829 84 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFF-RLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF 162 (247)
Q Consensus 84 l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~-~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~ 162 (247)
..........-.++.=..+.--...+.++++.|..+.+|++ .|.+.||.--|.+...++.-+-=+..++..-.|+...|
T Consensus 259 ~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 259 VLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcCC
Done!