Query 025829
Match_columns 247
No_of_seqs 128 out of 1180
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 18:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025829.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025829hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 23.9 46 0.0034 19.2 3.8 25 108-132 10-35 (64)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 17.7 69 0.005 20.2 3.9 25 188-212 34-58 (100)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 11.5 1.1E+02 0.008 15.7 3.5 9 190-198 9-17 (37)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.9 1.1E+02 0.0079 19.5 3.1 20 192-211 44-63 (107)
5 d3cx5d2 f.23.11.1 (D:261-307) 9.9 83 0.006 17.2 2.0 10 217-226 38-47 (47)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 9.1 15 0.0011 23.4 -1.8 22 191-212 26-47 (91)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.0 2E+02 0.014 16.1 4.0 28 185-212 5-32 (57)
8 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.4 4.8E+02 0.035 20.1 8.6 63 38-100 32-96 (405)
9 d2ae9a1 a.237.1.1 (A:1-76) The 3.8 1.7E+02 0.013 17.4 1.2 17 17-33 50-66 (76)
10 d2idob1 a.237.1.1 (B:2-76) Hom 3.6 3.4E+02 0.025 15.9 2.4 17 17-33 50-66 (75)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=23.85 E-value=46 Score=19.19 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcccc-cCCCCCCc
Q 025829 108 ITGAGIQGLMILGGGFF-RLPNDLPH 132 (247)
Q Consensus 108 ~~~~~~~~~~~l~sG~~-~~~~~iP~ 132 (247)
.+.+.+..|..+.+|++ .|.+++|.
T Consensus 10 T~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 45566778888888888 67777875
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.68 E-value=69 Score=20.21 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 025829 188 LAILFGMVVFYRLVFLGIIKTVEKM 212 (247)
Q Consensus 188 ~~iL~~~~i~f~~l~~~~l~~~~~~ 212 (247)
..+.+.+.++...+.+...|+|.++
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3444445555666677777776553
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=11.46 E-value=1.1e+02 Score=15.69 Aligned_cols=9 Identities=11% Similarity=0.711 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 025829 190 ILFGMVVFY 198 (247)
Q Consensus 190 iL~~~~i~f 198 (247)
.+.+|++.|
T Consensus 9 ~ly~Fw~FF 17 (37)
T d1eysh2 9 TIWAFWLFF 17 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.94 E-value=1.1e+02 Score=19.50 Aligned_cols=20 Identities=10% Similarity=0.193 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 025829 192 FGMVVFYRLVFLGIIKTVEK 211 (247)
Q Consensus 192 ~~~~i~f~~l~~~~l~~~~~ 211 (247)
+.+.++...+.+...|+|++
T Consensus 44 ~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 44 AVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 33334445566666666544
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.85 E-value=83 Score=17.22 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=5.3
Q ss_pred hhhhcccccc
Q 025829 217 KAFMSVPMKQ 226 (247)
Q Consensus 217 ~~~~~~~~~~ 226 (247)
||+..+|+|+
T Consensus 38 RKi~y~Ppkp 47 (47)
T d3cx5d2 38 RKFVFNPPKP 47 (47)
T ss_dssp CEEEECCCCS
T ss_pred ceeeeCCCCC
Confidence 5555555553
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.12 E-value=15 Score=23.41 Aligned_cols=22 Identities=9% Similarity=-0.188 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 025829 191 LFGMVVFYRLVFLGIIKTVEKM 212 (247)
Q Consensus 191 L~~~~i~f~~l~~~~l~~~~~~ 212 (247)
++.+.+++.++.+...|+|+++
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHHHhhheeeeccC
Confidence 3344455566666667776553
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.96 E-value=2e+02 Score=16.12 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025829 185 WVDLAILFGMVVFYRLVFLGIIKTVEKM 212 (247)
Q Consensus 185 ~~~~~iL~~~~i~f~~l~~~~l~~~~~~ 212 (247)
|+.++.+..+.++..+++...+.+.++.
T Consensus 5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 5 WRAAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5666776666666666655555555554
No 8
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.37 E-value=4.8e+02 Score=20.14 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhhccCccccc-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 025829 38 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEG-YQHFI-YFVLLLFACMLLVESLMMIVASLV 100 (247)
Q Consensus 38 ~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~-~~~f~-~~~l~~~l~~~~~~~lg~~is~~~ 100 (247)
.-.+++....+...++.|+++..+..-..+++.. .++.. ......++....+..+|.+++...
T Consensus 32 l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~ 96 (405)
T d2nwwa1 32 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLF 96 (405)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468899999999999999999998888777532 23322 333344455566667777776554
No 9
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=3.85 E-value=1.7e+02 Score=17.43 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHhCCC
Q 025829 17 SFVEDMKVFERERLNGH 33 (247)
Q Consensus 17 ~f~~er~v~~RE~~~g~ 33 (247)
.+..||-.++|..+.++
T Consensus 50 ~yF~eRL~~yR~~s~~~ 66 (76)
T d2ae9a1 50 SWFRERLIAHRLASVNL 66 (76)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46788888888887655
No 10
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=3.55 E-value=3.4e+02 Score=15.95 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHhCCC
Q 025829 17 SFVEDMKVFERERLNGH 33 (247)
Q Consensus 17 ~f~~er~v~~RE~~~g~ 33 (247)
.+..||-.++|+++..+
T Consensus 50 ~yF~eRL~~yR~~s~~l 66 (75)
T d2idob1 50 TYFMERLRHYRQLSLQL 66 (75)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46788999999887765
Done!