Citrus Sinensis ID: 025831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Secondary Structure (PSIPRED)
cHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccEEccccccHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHccEEcccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHEEEcccccHcccccccccccHHHHHHHHHHccccccccccHEEEEEEHccEEEccc
Coil and Loop (DISEMBL)
milklnklklplkWEHVAKIagkgvapgRLHVARAMVEAGHVENLKQAFARYLydggpaystgsepLAEVAVQLIHRTGglavlahpwalknpAAIIRKLKDVGlhglevyrsdgklvaytDLADTYgllklggsdyhgrgghgeselgsvklpvlvLNDFLKVARPIWCGAIKEILEsyadepsdsnlshitrygrgkmlkrnyplncgkglVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Flexible Loop (DISEMBL)
milklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILesyadepsdsnlSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Low Complexity Region (SEG)
MIlklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLggsdyhgrgghgESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Disordered region (IsUnstruct)
***KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA*******LSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNE******FEAIK***********
Disordered Region (DISOPRED)
MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLT*****SAEFEAIKLKLSHVSIN**
Disordered Region (DISEMBL)
MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Disordered Region (DISPRO)
MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSIN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
P44176	274	Protein TrpH OS=Haemophil	yes	no	0.538	0.485	0.309	3e-07
O54453	293	Protein TrpH OS=Salmonell	yes	no	0.542	0.457	0.316	4e-07
P77766	293	Protein TrpH OS=Escherich	N/A	no	0.538	0.453	0.300	1e-06

>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 4   KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
           KL K  +P  ++    +A   V   R H AR +V+ G V N  QAF RYL  G  A+   
Sbjct: 110 KLEKAGIPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKA 167

Query: 64  SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVY---RSDGK 116
                  A++ IH  GG+A++AHP         +RKL    K  G  G+E+    ++  +
Sbjct: 168 EWADIPTAIETIHAAGGIAIIAHPLRYNMTGKWVRKLIVDFKAWGGDGMEMADCGQTKDQ 227

Query: 117 LVAYTDLADTYGLLKLGGSDYH 138
                  A  + L    GSD+H
Sbjct: 228 RQMLARWAKEFDLQGSVGSDFH 249

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 4   KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
           +L K  +P  WE   ++A  G A  R H AR +VE G    +   F +YL  G   Y   
Sbjct: 121 RLEKAHIPGAWEGALRLANGG-AVTRGHFARFLVECGKAATMADVFKKYLARGKTGYVPP 179

Query: 64  SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV---YRSDGK 116
                E A+ +IH +GG AVLAHP      A  +++L     D     +EV    +S  +
Sbjct: 180 QWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVAHFADHHGDAMEVAQCQQSPNE 239

Query: 117 LVAYTDLADTYGLLKLGGSDYH 138
                 LA  + L    GSD+H
Sbjct: 240 RTQLATLARQHHLWASLGSDFH 261

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 4   KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
           +L K ++P   E   ++A +G A  R H AR +VE G   ++   F +YL  G   Y   
Sbjct: 117 RLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPP 175

Query: 64  SEPLAEVAVQLIHRTGGLAVLAHP--------WALKNPAAIIRKLKDVGLHGLEVYRSDG 115
                E A+ +IH +GG AVLAHP        W LK   A   +     +   +  +S  
Sbjct: 176 QWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKW-LKRLVAHFAEHHGDAMEVAQCQQSPN 234

Query: 116 KLVAYTDLADTYGLLKLGGSDYH 138
           +      LA  + L    GSD+H
Sbjct: 235 ERTQLAALARQHHLWASQGSDFH 257

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
449438183	443	PREDICTED: protein TrpH-like [Cucumis sa	0.995	0.555	0.747	1e-108
224059026	408	predicted protein [Populus trichocarpa]	0.955	0.578	0.779	1e-104
359485749	341	PREDICTED: protein trpH-like [Vitis vini	0.939	0.680	0.780	1e-103
296085663	325	unnamed protein product [Vitis vinifera]	0.939	0.713	0.780	1e-103
356524846	458	PREDICTED: protein trpH-like [Glycine ma	0.947	0.510	0.743	1e-102
356512073	455	PREDICTED: protein trpH-like [Glycine ma	0.931	0.505	0.747	1e-98
18397349	434	Polymerase/histidinol phosphatase-like p	0.987	0.562	0.680	5e-97
15450377	433	At2g13860/F13J11.19 [Arabidopsis thalian	0.987	0.563	0.680	5e-97
297836026	434	PHP domain-containing protein [Arabidops	0.995	0.566	0.678	5e-97
388516537	220	unknown [Medicago truncatula]	0.858	0.963	0.707	1e-85

>gi|449438183|ref|XP_004136869.1| PREDICTED: protein TrpH-like [Cucumis sativus] gi|449478899|ref|XP_004155448.1| PREDICTED: protein TrpH-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/246 (74%), Positives = 217/246 (88%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           M+ KLN+LKLPLKW+HVAKI GKGVAPGRLHVARA+VEAG+VENLKQAF+RYL+DGGPAY
Sbjct: 193 MVSKLNELKLPLKWDHVAKITGKGVAPGRLHVARALVEAGYVENLKQAFSRYLFDGGPAY 252

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAY 120
           STGSEP A  A+QLIH TGG+AVLAHPWALKNP A+IR+LKD GLHGLEVYRSDG+L AY
Sbjct: 253 STGSEPCAAEAIQLIHDTGGMAVLAHPWALKNPVAVIRRLKDAGLHGLEVYRSDGRLAAY 312

Query: 121 TDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESY 180
           +DLAD YGLLKLGGSD+HGRGGH ESE+GSV LPVL ++DFLK ARP+WC AI++ILESY
Sbjct: 313 SDLADNYGLLKLGGSDFHGRGGHSESEVGSVNLPVLAMHDFLKAARPVWCSAIRDILESY 372

Query: 181 ADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLS 240
            +EPS+SNL+ ITR+GR ++LK       G  L++ CL+LWLTNEE+Q+ EFEAI+LKLS
Sbjct: 373 VEEPSESNLAKITRFGRTRVLKGGSSPGSGNDLIERCLTLWLTNEEKQNDEFEAIRLKLS 432

Query: 241 HVSINQ 246
           H+SINQ
Sbjct: 433 HISINQ 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa] gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/236 (77%), Positives = 207/236 (87%)

Query: 12  LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVA 71
           LKWEHV +I GKGVAPGRLHVARAMVEAG+VENLKQAFARYLYDGGPAYSTG+EPL E A
Sbjct: 167 LKWEHVTRITGKGVAPGRLHVARAMVEAGYVENLKQAFARYLYDGGPAYSTGNEPLVEEA 226

Query: 72  VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 131
           VQLI  TGG+AVLAHPWALKNP AII++LKD GLHG+EVYRSDGKL  Y+DLAD YGLLK
Sbjct: 227 VQLICETGGVAVLAHPWALKNPVAIIQRLKDAGLHGMEVYRSDGKLAVYSDLADAYGLLK 286

Query: 132 LGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSH 191
           LGGSDYHGRGG+ ESELGSV LP + L+DFLKVARPIW  AIK+I E YA+EPSD NL+ 
Sbjct: 287 LGGSDYHGRGGNSESELGSVNLPAIALHDFLKVARPIWYHAIKDIFERYAEEPSDLNLAR 346

Query: 192 ITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG 247
           IT++G  K+LK N P++CGK L+D CLSLWLT EERQ+AEFEAIK+KLS V+INQG
Sbjct: 347 ITKFGGTKILKGNSPMSCGKDLIDRCLSLWLTTEERQTAEFEAIKIKLSCVTINQG 402

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485749|ref|XP_002264419.2| PREDICTED: protein trpH-like [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/232 (78%), Positives = 200/232 (86%)

Query: 14  WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
           WEHVAKIAGKGVAPGRLHVARAMVEAGHVENL+QAFARYLYDGGPAYSTGSEP AE AV+
Sbjct: 104 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLRQAFARYLYDGGPAYSTGSEPQAEEAVK 163

Query: 74  LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLG 133
           LI  TGG+AVLAHPWALKNP  I+R+LKD GLHG+EVYRSDGKL AY DLAD YGL+KLG
Sbjct: 164 LICETGGVAVLAHPWALKNPVTIVRRLKDAGLHGIEVYRSDGKLAAYNDLADDYGLVKLG 223

Query: 134 GSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHIT 193
           GSDYHGRGG GES+LGSV LPVL ++DFLKVARPIWC AI+ ILESY  EPSD NL  IT
Sbjct: 224 GSDYHGRGGQGESDLGSVNLPVLAVHDFLKVARPIWCNAIRNILESYIKEPSDMNLEQIT 283

Query: 194 RYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSIN 245
           R+ R +  K + PL CGK L+D CL+ WLTNEERQ+ EFEAIKLK S++SIN
Sbjct: 284 RFARNRNSKGDSPLGCGKDLIDLCLTSWLTNEERQNPEFEAIKLKFSNISIN 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085663|emb|CBI29462.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/232 (78%), Positives = 200/232 (86%)

Query: 14  WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
           WEHVAKIAGKGVAPGRLHVARAMVEAGHVENL+QAFARYLYDGGPAYSTGSEP AE AV+
Sbjct: 88  WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLRQAFARYLYDGGPAYSTGSEPQAEEAVK 147

Query: 74  LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLG 133
           LI  TGG+AVLAHPWALKNP  I+R+LKD GLHG+EVYRSDGKL AY DLAD YGL+KLG
Sbjct: 148 LICETGGVAVLAHPWALKNPVTIVRRLKDAGLHGIEVYRSDGKLAAYNDLADDYGLVKLG 207

Query: 134 GSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHIT 193
           GSDYHGRGG GES+LGSV LPVL ++DFLKVARPIWC AI+ ILESY  EPSD NL  IT
Sbjct: 208 GSDYHGRGGQGESDLGSVNLPVLAVHDFLKVARPIWCNAIRNILESYIKEPSDMNLEQIT 267

Query: 194 RYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSIN 245
           R+ R +  K + PL CGK L+D CL+ WLTNEERQ+ EFEAIKLK S++SIN
Sbjct: 268 RFARNRNSKGDSPLGCGKDLIDLCLTSWLTNEERQNPEFEAIKLKFSNISIN 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524846|ref|XP_003531039.1| PREDICTED: protein trpH-like [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/234 (74%), Positives = 208/234 (88%)

Query: 14  WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
           WEHV +IAGKGVAPGRLHVARAM+EAG+VENL+QAFARYL+DGGPAYSTGSEPLAE A++
Sbjct: 216 WEHVCRIAGKGVAPGRLHVARAMLEAGYVENLRQAFARYLFDGGPAYSTGSEPLAEEAIK 275

Query: 74  LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLG 133
           +I  TGG+AVLAHPWALKNP  I+R+LK+ GLHG+EVY+SDG+L AY+DLAD YGLLK+G
Sbjct: 276 MISHTGGVAVLAHPWALKNPVPIVRRLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIG 335

Query: 134 GSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHIT 193
           GSDYHGRGGH ESELGSV LPV+VL+DFLKVARPIWC AI+EILE YA+EPSDSNL+ IT
Sbjct: 336 GSDYHGRGGHNESELGSVNLPVIVLHDFLKVARPIWCNAIREILECYAEEPSDSNLATIT 395

Query: 194 RYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG 247
           R+GR    K   P +CG+ L+D CL LWL+++E ++AEFEAIKLKLS+VS++QG
Sbjct: 396 RFGRTWSFKGGSPFSCGQDLIDHCLPLWLSSQEMENAEFEAIKLKLSNVSVSQG 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512073|ref|XP_003524745.1| PREDICTED: protein trpH-like [Glycine max]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 203/230 (88%)

Query: 14  WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
           WEHV +IAGKGVAPGRLHVARAMVEAG+VENL+QAFARYL+DGGPAY+TGSEPLAE A++
Sbjct: 213 WEHVCRIAGKGVAPGRLHVARAMVEAGYVENLRQAFARYLFDGGPAYATGSEPLAEEAIK 272

Query: 74  LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLG 133
           +I  TGG+AVLAHPWALKNP  IIR LK+ GLHG+EVY+SDG+L AY+DLAD YGLLK+G
Sbjct: 273 MICHTGGVAVLAHPWALKNPIPIIRGLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIG 332

Query: 134 GSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHIT 193
           GSDYHGRGGH ESELGSV LPVLVL+DFL VARPIWC AI+EILE YA+EPSDSNL+ IT
Sbjct: 333 GSDYHGRGGHNESELGSVNLPVLVLHDFLMVARPIWCNAIREILECYAEEPSDSNLATIT 392

Query: 194 RYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVS 243
           R+GR ++ K   PL+ G+ L+D CL LWL+++E ++A FEAIKLKLS+VS
Sbjct: 393 RFGRTRIFKGGSPLSFGQDLIDHCLPLWLSSQEMENAGFEAIKLKLSNVS 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397349|ref|NP_565360.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana] gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana] gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 166/244 (68%), Positives = 206/244 (84%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           M+LKLNKLK+PLKWEHV +IAGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY
Sbjct: 180 MVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAY 239

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAY 120
           +TG+EP+AE AV+LI +TGG+AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL  +
Sbjct: 240 ATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKLEVF 299

Query: 121 TDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESY 180
           ++LADTY LLKLGGSDYHG+GG  ESELGSV LPV  L DFL V RPIWC AIK  + ++
Sbjct: 300 SELADTYNLLKLGGSDYHGKGGRNESELGSVNLPVTALQDFLNVGRPIWCEAIKATMRAF 359

Query: 181 ADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLS 240
            D+PSDSNLS+I R+ + ++LK N   +CGK L+D CL++WLT++ER S +FEA++LKLS
Sbjct: 360 LDQPSDSNLSNILRFDKARILKGNSAWSCGKELMDRCLAIWLTSDERNSNDFEALRLKLS 419

Query: 241 HVSI 244
            V I
Sbjct: 420 FVPI 423

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana] gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 166/244 (68%), Positives = 206/244 (84%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           M+LKLNKLK+PLKWEHV +IAGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY
Sbjct: 179 MVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAY 238

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAY 120
           +TG+EP+AE AV+LI +TGG+AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL  +
Sbjct: 239 ATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKLEVF 298

Query: 121 TDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESY 180
           ++LADTY LLKLGGSDYHG+GG  ESELGSV LPV  L DFL V RPIWC AIK  + ++
Sbjct: 299 SELADTYNLLKLGGSDYHGKGGRNESELGSVNLPVTALQDFLNVGRPIWCEAIKATMRAF 358

Query: 181 ADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLS 240
            D+PSDSNLS+I R+ + ++LK N   +CGK L+D CL++WLT++ER S +FEA++LKLS
Sbjct: 359 LDQPSDSNLSNILRFDKARILKGNSAWSCGKELMDRCLAIWLTSDERNSNDFEALRLKLS 418

Query: 241 HVSI 244
            V I
Sbjct: 419 FVPI 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 167/246 (67%), Positives = 207/246 (84%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           M+LKLNKLK+PLKWEHV +IAGK VAPGR+HVARA++EAG+VENLKQAF +YL+DGGPAY
Sbjct: 180 MVLKLNKLKVPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLKQAFTKYLHDGGPAY 239

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAY 120
           STGSEP+AE AV+LI +TGG+AVLAHPWALKN   +IR+LKD GLHG+EVYRSDGKL  +
Sbjct: 240 STGSEPMAEEAVKLICKTGGVAVLAHPWALKNHVGVIRRLKDAGLHGVEVYRSDGKLEVF 299

Query: 121 TDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESY 180
           ++LADTY LLKLGGSDYHG+GG  ESELGSV LPV  L DFL V RP+WC AIK  ++++
Sbjct: 300 SELADTYSLLKLGGSDYHGKGGRNESELGSVNLPVTALQDFLNVGRPLWCEAIKATMKAF 359

Query: 181 ADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLS 240
             +PSDSNLS+I R+ R ++LK N   +CGK L+D CL++WLT++ER+S +FEA++LKLS
Sbjct: 360 LAQPSDSNLSNILRFDRARILKGNSAWSCGKELMDRCLAIWLTSDERKSNDFEALRLKLS 419

Query: 241 HVSINQ 246
            V I  
Sbjct: 420 FVPITS 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516537|gb|AFK46330.1| unknown [Medicago truncatula]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/212 (70%), Positives = 182/212 (85%)

Query: 36  MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA 95
           MVEAG+VENLKQAFARYL+DGGPAYS GSEP+ E A+++I  TGG+AVLAHPWALKNP A
Sbjct: 1   MVEAGYVENLKQAFARYLFDGGPAYSKGSEPVVEEAIKMICDTGGVAVLAHPWALKNPVA 60

Query: 96  IIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPV 155
           IIR+LK+ GLHG+EVY+SDG+L AY+DLAD YGLLK+GGSDYHGRGGH ESELGSV LPV
Sbjct: 61  IIRRLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIGGSDYHGRGGHHESELGSVNLPV 120

Query: 156 LVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVD 215
            VL+DFLKVARPIWC AI+E+LE YA+EPS++NL  ITR+GR ++ K   PL CG+ L+D
Sbjct: 121 PVLHDFLKVARPIWCNAIRELLECYAEEPSNTNLETITRFGRTRIFKGGSPLYCGQDLID 180

Query: 216 ECLSLWLTNEERQSAEFEAIKLKLSHVSINQG 247
            CL LWL+++E ++ EFEA KLKLS+V  +QG
Sbjct: 181 HCLPLWLSSQEMENEEFEATKLKLSNVFTSQG 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2043738	434	AT2G13840 [Arabidopsis thalian	0.935	0.532	0.632	6.2e-78
UNIPROTKB|Q3Z644	287	DET1610 "PHP domain N-terminal	0.663	0.571	0.303	1.2e-17
TIGR_CMR|DET_1610	287	DET_1610 "PHP domain N-termina	0.663	0.571	0.303	1.2e-17
UNIPROTKB|Q3A9Z4	278	CHY_2227 "PHP domain protein"	0.465	0.413	0.341	3e-12
TIGR_CMR|CHY_2227	278	CHY_2227 "PHP domain protein"	0.465	0.413	0.341	3e-12
UNIPROTKB|Q74D71	288	GSU1448 "Metal-dependent phosp	0.437	0.375	0.343	7.8e-08
TIGR_CMR|GSU_1448	288	GSU_1448 "PHP domain protein"	0.437	0.375	0.343	7.8e-08
UNIPROTKB|Q8ECV6	286	trpH "PHP family metal-depende	0.388	0.335	0.356	1.9e-07
TIGR_CMR|SO_3017	286	SO_3017 "TrpH family protein"	0.388	0.335	0.356	1.9e-07
UNIPROTKB|Q9KSS9	290	VC_1177 "Putative uncharacteri	0.344	0.293	0.360	5.8e-05

TAIR|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 146/231 (63%), Positives = 183/231 (79%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
             WEHV +IAGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+
Sbjct:   193 WEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVK 252

Query:    74 LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLX 133
             LI +TGG+AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL  +++LADTY LLKL 
Sbjct:   253 LICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKLEVFSELADTYNLLKLG 312

Query:   134 XXXXXXXXXXXESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHIT 193
                        ESELGSV LPV  L DFL V RPIWC AIK  + ++ D+PSDSNLS+I 
Sbjct:   313 GSDYHGKGGRNESELGSVNLPVTALQDFLNVGRPIWCEAIKATMRAFLDQPSDSNLSNIL 372

Query:   194 RYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSI 244
             R+ + ++LK N   +CGK L+D CL++WLT++ER S +FEA++LKLS V I
Sbjct:   373 RFDKARILKGNSAWSCGKELMDRCLAIWLTSDERNSNDFEALRLKLSFVPI 423

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA;ISS

UNIPROTKB|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 51/168 (30%), Positives = 87/168 (51%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
             W+ V++IAG+G   GR H+A AM+E G+++N+ +AF +Y+  GGPAY    +   E AV+
Sbjct:   121 WQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVR 179

Query:    74 LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR---SDGKLVAYTDLADTYGLL 130
             L+   GG+ V+AHP  + +   ++ +L   GL GLE +    +  ++     LA  + LL
Sbjct:   180 LVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECHYGGFNPQQIDGLVKLAGKHHLL 239

Query:   131 KLXXXXXXXXXXXXESELGSVKLPVLVLNDFLKVARPIWCGAIKEILE 178
                           E+ +G  ++P+      +  AR I    + E +E
Sbjct:   240 TTGGSDYHGLDELTETPIGGAEVPLQDAKKLIAKARQIKAKGLAEDME 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 51/168 (30%), Positives = 87/168 (51%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
             W+ V++IAG+G   GR H+A AM+E G+++N+ +AF +Y+  GGPAY    +   E AV+
Sbjct:   121 WQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVR 179

Query:    74 LIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR---SDGKLVAYTDLADTYGLL 130
             L+   GG+ V+AHP  + +   ++ +L   GL GLE +    +  ++     LA  + LL
Sbjct:   180 LVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECHYGGFNPQQIDGLVKLAGKHHLL 239

Query:   131 KLXXXXXXXXXXXXESELGSVKLPVLVLNDFLKVARPIWCGAIKEILE 178
                           E+ +G  ++P+      +  AR I    + E +E
Sbjct:   240 TTGGSDYHGLDELTETPIGGAEVPLQDAKKLIAKARQIKAKGLAEDME 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 42/123 (34%), Positives = 67/123 (54%)

Query:    15 EHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL 74
             E V   AG  +  GR H+AR +++ G+V ++++AF++YL  G PAY    +   + A+ +
Sbjct:   118 EEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINI 176

Query:    75 IHRTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVY---RSDGKLVAYTDLADTY 127
             I + GGL  LAHP  L+        I+ +L   GL G+E Y    ++ +   Y +LA  Y
Sbjct:   177 IKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAYYTYHNEEQTRLYLELAGKY 236

Query:   128 GLL 130
              LL
Sbjct:   237 NLL 239

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 42/123 (34%), Positives = 67/123 (54%)

Query:    15 EHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL 74
             E V   AG  +  GR H+AR +++ G+V ++++AF++YL  G PAY    +   + A+ +
Sbjct:   118 EEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINI 176

Query:    75 IHRTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVY---RSDGKLVAYTDLADTY 127
             I + GGL  LAHP  L+        I+ +L   GL G+E Y    ++ +   Y +LA  Y
Sbjct:   177 IKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAYYTYHNEEQTRLYLELAGKY 236

Query:   128 GLL 130
              LL
Sbjct:   237 NLL 239

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74D71 GSU1448 "Metal-dependent phosphoesterase, PHP family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 141 (54.7 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 44/128 (34%), Positives = 68/128 (53%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGG-PA-YSTGSEPLAEVA 71
             ++ V  +AG  V  GR H+ R +V+ G+  +++ AF RYL     P  Y    E +AE  
Sbjct:   125 YDEVLSMAGGAV--GRPHIGRVLVDNGYARDMEDAFRRYLIPCNVPKRYMPAGEAIAE-- 180

Query:    72 VQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEVYRS----DGKLVAYTD- 122
                I R GG++VLAHP  + +       ++ +L  +GL GLEV+ +    D  L  Y + 
Sbjct:   181 ---IRRIGGVSVLAHPPTITDDRRRLRQVVEQLAQLGLDGLEVFNNLCFKDDML--YLER 235

Query:   123 LADTYGLL 130
             LA+ +GLL
Sbjct:   236 LAEEFGLL 243

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1448 GSU_1448 "PHP domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 141 (54.7 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 44/128 (34%), Positives = 68/128 (53%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGG-PA-YSTGSEPLAEVA 71
             ++ V  +AG  V  GR H+ R +V+ G+  +++ AF RYL     P  Y    E +AE  
Sbjct:   125 YDEVLSMAGGAV--GRPHIGRVLVDNGYARDMEDAFRRYLIPCNVPKRYMPAGEAIAE-- 180

Query:    72 VQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEVYRS----DGKLVAYTD- 122
                I R GG++VLAHP  + +       ++ +L  +GL GLEV+ +    D  L  Y + 
Sbjct:   181 ---IRRIGGVSVLAHPPTITDDRRRLRQVVEQLAQLGLDGLEVFNNLCFKDDML--YLER 235

Query:   123 LADTYGLL 130
             LA+ +GLL
Sbjct:   236 LAEEFGLL 243

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECV6 trpH "PHP family metal-dependent phosphoesterases TrpH" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
             +E   K+A  G A  R H AR + + GH  ++   F RYL  G   Y   +      A++
Sbjct:   125 YEGAKKLAA-GAALSRGHYARWLADNGHAVDMPSVFKRYLARGKTGYVPNNWGDMASAIK 183

Query:    74 LIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEV 110
             +IH  GGLAVLAHP   K  A     ++R+ K+ G   +EV
Sbjct:   184 VIHNAGGLAVLAHPSGYKLSAKWLKRLVREFKEAGGDAMEV 224

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3017 SO_3017 "TrpH family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    14 WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQ 73
             +E   K+A  G A  R H AR + + GH  ++   F RYL  G   Y   +      A++
Sbjct:   125 YEGAKKLAA-GAALSRGHYARWLADNGHAVDMPSVFKRYLARGKTGYVPNNWGDMASAIK 183

Query:    74 LIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEV 110
             +IH  GGLAVLAHP   K  A     ++R+ K+ G   +EV
Sbjct:   184 VIHNAGGLAVLAHPSGYKLSAKWLKRLVREFKEAGGDAMEV 224

GO:0008150 "biological_process" evidence=ND

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

UNIPROTKB|Q9KSS9 VC_1177 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 31/86 (36%), Positives = 42/86 (48%)

Query:    15 EHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL 74
             E V  IA  G    R H A+ +V+ G+  N++Q F +YL    P Y   +      AV  
Sbjct:   121 EEVQHIAD-GAPITRAHFAKWLVDNGYATNMQQVFKKYLTRDNPGYVPPNWCSMSEAVSA 179

Query:    75 IHRTGGLAVLAHPWALKNPAAIIRKL 100
             IH  GG AVLAHP      A  +++L
Sbjct:   180 IHAAGGQAVLAHPGRYDLTAKWLKRL 205

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_I000518	hypothetical protein (408 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CMS	SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC [...] (230 aa)	•								0.531
	fgenesh4_pg.C_scaffold_18770000001	Predicted protein (302 aa)	•								0.487
	eugene3.139720002	Predicted protein (128 aa)	•								0.455
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)	•								0.426

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
cd07438	155	cd07438, PHP_HisPPase_AMP, Polymerase and Histidin	3e-19
COG0613	258	COG0613, COG0613, Predicted metal-dependent phosph	2e-12

>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound

 Score = 80.9 bits (201), Expect = 3e-19
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 7/79 (8%)

Query: 68  AEVAVQLIHRTGGLAVLAHPWALKNPA----AIIRKLKDVGLHGLEVYRSDGKL---VAY 120
            E A++LIH  GG+AVLAHP   K        +I +LK+ GL G+EVY            
Sbjct: 77  PEEAIELIHAAGGVAVLAHPGLYKLSRKKLEELIEELKEAGLDGIEVYHPYHSPEDRERL 136

Query: 121 TDLADTYGLLKLGGSDYHG 139
            +LA  YGLL  GGSD+HG
Sbjct: 137 LELAKEYGLLVTGGSDFHG 155

The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel. Length = 155

>gnl|CDD|223686 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 51/152 (33%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           +  +L K  +P  +E   K+AG G    R H+AR  VE G+    +  F +YL  G P Y
Sbjct: 107 IKERLGKAIIPHPFEGARKLAGLGAIT-RAHIARDAVEVGNASTRQGVFNKYLKRGAPKY 165

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA-AIIRKLKDVGLHGLEVYRSDGK--- 116
                  +E  V  IH  GG AVLAHP         ++    D G  G+EV         
Sbjct: 166 VPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNP 225

Query: 117 LVAYTDLADTYGLLKLGGSDYHGRGG--HGES 146
                 LA  +GLL   GSD+H  G    GES
Sbjct: 226 REVLALLAKEFGLLASVGSDFHTPGDWIEGES 257

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	99.78
PRK09248	246	putative hydrolase; Validated	98.82
TIGR00375	374	conserved hypothetical protein TIGR00375. The memb	97.8
PF13263	56	PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3	97.7
PRK07945	335	hypothetical protein; Provisional	97.06
PRK07328	269	histidinol-phosphatase; Provisional	97.01
PRK08392	215	hypothetical protein; Provisional	96.87
TIGR01856	253	hisJ_fam histidinol phosphate phosphatase HisJ fam	96.74
PRK08123	270	histidinol-phosphatase; Reviewed	96.45
PRK00912	237	ribonuclease P protein component 3; Provisional	96.42
PRK06361	212	hypothetical protein; Provisional	96.14
PRK06740	331	histidinol-phosphatase; Validated	96.04
PRK05588	255	histidinol-phosphatase; Provisional	96.0
PRK08609	570	hypothetical protein; Provisional	95.8
PRK00448	1437	polC DNA polymerase III PolC; Validated	95.79
COG1387	237	HIS2 Histidinol phosphatase and related hydrolases	95.67
PRK07329	246	hypothetical protein; Provisional	95.0
COG1379	403	PHP family phosphoesterase with a Zn ribbon [Gener	93.13
PF10566	273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	89.28
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	87.96
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	84.3
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	80.91
PRK09997	258	hydroxypyruvate isomerase; Provisional	80.6

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=157.11  Aligned_cols=138  Identities=36%  Similarity=0.503  Sum_probs=124.1

Q ss_pred             HHHhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCeE
Q 025831            3 LKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA   82 (247)
Q Consensus         3 ~kL~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGva   82 (247)
                      +++...+++-.++.+.+.++.+ .+.|+|+++.+|+.+++++..++|++|+..++++|+++.+.+.++.|.+++.+||++
T Consensus       109 ~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~  187 (258)
T COG0613         109 ERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTA  187 (258)
T ss_pred             HhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEE
Confidence            4455567888899988887654 478999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcCCCCh-HHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCC
Q 025831           83 VLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRG  141 (247)
Q Consensus        83 VLAHP~~~~~~-~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~  141 (247)
                      |+|||.+|... ..++..+.+.|.||||+++...   +...+..++++++++.|+|||||.+.
T Consensus       188 v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~  250 (258)
T COG0613         188 VLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPG  250 (258)
T ss_pred             EeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCC
Confidence            99999998753 5788999999999999999764   56889999999999999999999875

>PRK09248 putative hydrolase; Validated

Probab=98.82  E-value=1.2e-08  Score=90.63  Aligned_cols=77  Identities=23%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHcCCeEEecCCcCCC---ChHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHHHHcCCceeec
Q 025831           67 LAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGG  134 (247)
Q Consensus        67 ~~~EaI~~Ih~aGGvaVLAHP~~~~---~~~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~lA~~~gLl~TGG  134 (247)
                      ..++.+++| ++|++.|||||.++.   ....+++.+++.|+ +||+.+++.         ....+.+++.++|+..|.|
T Consensus       114 ~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~g  191 (246)
T PRK09248        114 NTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALG  191 (246)
T ss_pred             HHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEe
Confidence            356788888 899999999998654   23467788888888 999987532         4678889999999999999


Q ss_pred             CCCCCCCCCCCccccC
Q 025831          135 SDYHGRGGHGESELGS  150 (247)
Q Consensus       135 SDfHG~~~~~~~~lG~  150 (247)
                      ||+|.+.     .+|.
T Consensus       192 SDAH~~~-----~vg~  202 (246)
T PRK09248        192 SDAHIAF-----DIGN  202 (246)
T ss_pred             CCCCChh-----hhcc
Confidence            9999984     5774

>TIGR00375 conserved hypothetical protein TIGR00375

Probab=97.80  E-value=6e-05  Score=71.93  Aligned_cols=107  Identities=16%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             CCCCHH--HHHHHHhhCCCCc-eeCC-CCCCHHHHHHHHHHcCCeEEecCCcCCCC--hHH--HHHHHHHcCCcEEEEec
Q 025831           41 HVENLK--QAFARYLYDGGPA-YSTG-SEPLAEVAVQLIHRTGGLAVLAHPWALKN--PAA--IIRKLKDVGLHGLEVYR  112 (247)
Q Consensus        41 ~v~~~~--eaF~~yL~~g~pa-yv~~-~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~--~~~--li~~l~~~GlDGIEv~~  112 (247)
                      |..+..  +.|.++|...-+. --|. ..++..+.++.+++.||++|.||+++...  ...  .+.+.....-|+||+..
T Consensus        85 ~fp~l~~a~~f~~~l~~~l~~~~rp~q~~~~~~~~~~~v~~~gGi~iPAHiftP~~Sl~g~~~~~~~~~g~~p~avElgl  164 (374)
T TIGR00375        85 FMPTLADMKQFSNWLSARLKNIGRSSQRIYETGLNLEKVQDYGGLFGPAHIFTPWTSLYKSGDSSSDCYVFDPDFVELGL  164 (374)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCCCCCeeeecHHHHHHHhhcCCeEEEeCCCCCCcccccccccchhhhhcCCCceEEEec
Confidence            345543  3477777542111 0122 23688899999999999999999986331  000  01111111129999999


Q ss_pred             CcccHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025831          113 SDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSV  151 (247)
Q Consensus       113 ~~~~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~  151 (247)
                      +.. ..++.+++...++....+||.|.+.   +..+|+-
T Consensus       165 S~d-~~ma~~~s~L~~~~~ISnSDAHsl~---p~~IGre  199 (374)
T TIGR00375       165 SAD-TDMADHISELNDYPFLTNSDAHSLG---PHRLGRE  199 (374)
T ss_pred             cCC-HHHHHHhHHhcCCCeEeecCCCCCC---hhHhCCc
Confidence            766 4555589999999999999999974   1247753

The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.

>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B

Probab=97.70  E-value=1.6e-05  Score=55.94  Aligned_cols=31  Identities=39%  Similarity=0.431  Sum_probs=21.2

Q ss_pred             cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025831          116 KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSV  151 (247)
Q Consensus       116 ~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~  151 (247)
                      .+.++.++|++++++++||||.|.+.     .+|..
T Consensus         3 ~N~~A~~~A~~~~lp~~~gSDAH~~~-----~vG~~   33 (56)
T PF13263_consen    3 ANRRAAELAEKYGLPFTGGSDAHFLE-----EVGRG   33 (56)
T ss_dssp             ---HHHHHHHHTT--EEEE--BSSGG-----GTTTT
T ss_pred             HHHHHHHHHHHcCCCeEeEEcccChh-----hcCCE
Confidence            46789999999999999999999873     68875

>PRK07945 hypothetical protein; Provisional

Probab=97.06  E-value=0.0015  Score=61.32  Aligned_cols=70  Identities=19%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             HHHHHHHHcCCeEEecCCcC---CC----------ChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceee
Q 025831           70 VAVQLIHRTGGLAVLAHPWA---LK----------NPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLG  133 (247)
Q Consensus        70 EaI~~Ih~aGGvaVLAHP~~---~~----------~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TG  133 (247)
                      ..++++. .+.+-|+|||..   +.          ..+++++.+++.| -+||+-.+.   .....+.++|+++|..+|-
T Consensus       212 ~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vti  289 (335)
T PRK07945        212 RMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSI  289 (335)
T ss_pred             HHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEe
Confidence            3444554 678999999941   10          1245666666665 589998754   2567889999999999999


Q ss_pred             cCCCCCCC
Q 025831          134 GSDYHGRG  141 (247)
Q Consensus       134 GSDfHG~~  141 (247)
                      |||+|.+.
T Consensus       290 gSDAH~p~  297 (335)
T PRK07945        290 DTDAHAPG  297 (335)
T ss_pred             cCCCCChh
Confidence            99999985

>PRK07328 histidinol-phosphatase; Provisional

Probab=97.01  E-value=0.0027  Score=57.35  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             HHHHHHHcCCeEEecCCcCCC-----C---h----HHHHHHHHHcCCcEEEEecCc--------ccHHHHHHHHHHcCCc
Q 025831           71 AVQLIHRTGGLAVLAHPWALK-----N---P----AAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGLL  130 (247)
Q Consensus        71 aI~~Ih~aGGvaVLAHP~~~~-----~---~----~~li~~l~~~GlDGIEv~~~~--------~~~~~~~~lA~~~gLl  130 (247)
                      .++++. .|.+-|+|||....     .   .    +++++.+++.| -+||+-.+.        .....+.++|+++|..
T Consensus       146 ~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~  223 (269)
T PRK07328        146 VEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGIP  223 (269)
T ss_pred             HHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCC
Confidence            455554 68999999997422     0   1    34566666665 489998742        1346789999999999


Q ss_pred             eeecCCCCCCC
Q 025831          131 KLGGSDYHGRG  141 (247)
Q Consensus       131 ~TGGSDfHG~~  141 (247)
                      +|-|||.|.+.
T Consensus       224 itigSDAH~~~  234 (269)
T PRK07328        224 VVLGSDAHRPE  234 (269)
T ss_pred             EEEeCCCCCHH
Confidence            99999999984

>PRK08392 hypothetical protein; Provisional

Probab=96.87  E-value=0.0037  Score=54.64  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCeEEecCCcCCC---------ChHHHHHHHHHcCCcEEEEecCc-ccHHHHHHHHHHcCCceeecCCCCC
Q 025831           70 VAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLGGSDYHG  139 (247)
Q Consensus        70 EaI~~Ih~aGGvaVLAHP~~~~---------~~~~li~~l~~~GlDGIEv~~~~-~~~~~~~~lA~~~gLl~TGGSDfHG  139 (247)
                      +.++++ +.+.+-|+|||....         ..+++++.+++.| -.+|+-... .....+.+.|+++|..+|-|||.|.
T Consensus       108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~  185 (215)
T PRK08392        108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR  185 (215)
T ss_pred             HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence            345555 568999999996321         1234556555666 689997632 3455788999999999999999999


Q ss_pred             CCCCCCccccC
Q 025831          140 RGGHGESELGS  150 (247)
Q Consensus       140 ~~~~~~~~lG~  150 (247)
                      +.     .+|.
T Consensus       186 ~~-----~vg~  191 (215)
T PRK08392        186 PE-----DVGN  191 (215)
T ss_pred             hH-----HCCc
Confidence            84     5775

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family

Probab=96.74  E-value=0.0033  Score=56.32  Aligned_cols=71  Identities=24%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCeEEecCCcCCC----C--------------hHHHHHHHHHcCCcEEEEecCc--------ccHHHHHHH
Q 025831           70 VAVQLIHRTGGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDL  123 (247)
Q Consensus        70 EaI~~Ih~aGGvaVLAHP~~~~----~--------------~~~li~~l~~~GlDGIEv~~~~--------~~~~~~~~l  123 (247)
                      ...++|....-.-|+|||...+    .              .+++++.+++.| -+||+-.+.        .....+.++
T Consensus       146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~  224 (253)
T TIGR01856       146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNL  224 (253)
T ss_pred             HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHH
Confidence            3444666633357999995311    1              134555565555 589998752        134678899


Q ss_pred             HHHcCCceeecCCCCCCC
Q 025831          124 ADTYGLLKLGGSDYHGRG  141 (247)
Q Consensus       124 A~~~gLl~TGGSDfHG~~  141 (247)
                      |+++|..+|-|||.|.+.
T Consensus       225 ~~~~g~~itlgSDAH~~~  242 (253)
T TIGR01856       225 AKELGIPLVLGSDAHGPG  242 (253)
T ss_pred             HHHcCCCEEecCCCCCHH
Confidence            999999999999999984

This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.

>PRK08123 histidinol-phosphatase; Reviewed

Probab=96.45  E-value=0.016  Score=52.42  Aligned_cols=76  Identities=21%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             HHHHHHHHcCC---eEEecCCcC---C----C---------ChHHHHHHHHHcCCcEEEEecCc---------ccHHHHH
Q 025831           70 VAVQLIHRTGG---LAVLAHPWA---L----K---------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYT  121 (247)
Q Consensus        70 EaI~~Ih~aGG---vaVLAHP~~---~----~---------~~~~li~~l~~~GlDGIEv~~~~---------~~~~~~~  121 (247)
                      ..++++....+   +-|+|||..   +    .         ..+++++.+++.| -+||+-.+.         .....+.
T Consensus       157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINtsgl~~~~~~~~yP~~~il  235 (270)
T PRK08123        157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRG-YELDFNTAGLRKPYCGEPYPPGEII  235 (270)
T ss_pred             HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCcHHHH
Confidence            34445544322   569999962   1    1         1135566666666 489998642         1347789


Q ss_pred             HHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025831          122 DLADTYGLLKLGGSDYHGRGGHGESELGSV  151 (247)
Q Consensus       122 ~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~  151 (247)
                      ++|+++|..+|-|||+|.+.     .+|..
T Consensus       236 ~~~~e~g~~itlgSDAH~~~-----~vg~~  260 (270)
T PRK08123        236 TLAKKLGIPLVYGSDAHSAA-----DVGRG  260 (270)
T ss_pred             HHHHHcCCCEEEeCCCCCHH-----HHHhh
Confidence            99999999999999999984     46653

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=96.42  E-value=0.01  Score=52.62  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCeEEecCCcCCC----ChHHHHHHHHHcCCcEEEEecCcc-------------cHHHHHHHHHHcCCce
Q 025831           69 EVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG-------------KLVAYTDLADTYGLLK  131 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~-------------~~~~~~~lA~~~gLl~  131 (247)
                      +++.+.+.+.+++-|++||+...    ..+.+++..++.| -.+|+-++.-             ....+.++|+++|..+
T Consensus        92 ~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~pi  170 (237)
T PRK00912         92 EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPL  170 (237)
T ss_pred             HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCE
Confidence            44546788899999999998522    1235555555555 4788877531             1146889999999999


Q ss_pred             eecCCCCCCC
Q 025831          132 LGGSDYHGRG  141 (247)
Q Consensus       132 TGGSDfHG~~  141 (247)
                      +.|||.|.+.
T Consensus       171 iisSdAh~~~  180 (237)
T PRK00912        171 VLTSGAMSCY  180 (237)
T ss_pred             EEeCCCCccc
Confidence            9999999974

>PRK06361 hypothetical protein; Provisional

Probab=96.14  E-value=0.016  Score=50.13  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=48.4

Q ss_pred             HHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceeecCCCCCC
Q 025831           72 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR  140 (247)
Q Consensus        72 I~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TGGSDfHG~  140 (247)
                      ++++ +.|-+-|||||....  ..+++.++ ..--.||+..+.   .....+.++|+++|+.++.|||+|.+
T Consensus       106 ~~a~-~~~~~dvlaHpd~~~--~~~~~~~~-~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~  173 (212)
T PRK06361        106 LAAI-ECEDVDILAHPGLIT--EEEAELAA-ENGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAP  173 (212)
T ss_pred             HHHH-hCCCCcEecCcchhh--HHHHHHHH-HcCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCH
Confidence            4444 678899999997533  34555444 455799997633   24578899999999999999999965

>PRK06740 histidinol-phosphatase; Validated

Probab=96.04  E-value=0.014  Score=54.68  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             HHHHHHHHHcCCeEEecCCcCCC-------------ChHHHHHHHHHcCCcEEEEecCc---------ccHHHHHHHHHH
Q 025831           69 EVAVQLIHRTGGLAVLAHPWALK-------------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYTDLADT  126 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~~~-------------~~~~li~~l~~~GlDGIEv~~~~---------~~~~~~~~lA~~  126 (247)
                      +..+++| +.|-+-|+|||...+             ..+.+++.+++.| -.+|+-.+.         .....+.+.|++
T Consensus       205 ~~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e  282 (331)
T PRK06740        205 KTVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAK  282 (331)
T ss_pred             HHHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHH
Confidence            3455556 578999999996321             1123445555554 589998752         134678889999


Q ss_pred             cCCceeecCCCCCCCCCCCccccCc
Q 025831          127 YGLLKLGGSDYHGRGGHGESELGSV  151 (247)
Q Consensus       127 ~gLl~TGGSDfHG~~~~~~~~lG~~  151 (247)
                      +|..+|-|||+|.+.     .+|..
T Consensus       283 ~Gv~~tlgSDAH~p~-----~VG~~  302 (331)
T PRK06740        283 HEVPITLSSDAHYPN-----DLGKY  302 (331)
T ss_pred             CCCeEEEeeCCCCHH-----HHHhH
Confidence            999999999999984     57753

>PRK05588 histidinol-phosphatase; Provisional

Probab=96.00  E-value=0.025  Score=50.56  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCeEEecCCcCCC-------------Ch----HHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHH
Q 025831           70 VAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLAD  125 (247)
Q Consensus        70 EaI~~Ih~aGGvaVLAHP~~~~-------------~~----~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~  125 (247)
                      ..++++...+.+-|+|||....             ..    +++++.+++.| -+||+-.++-       ......+.+.
T Consensus       128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~  206 (255)
T PRK05588        128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFY  206 (255)
T ss_pred             HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHH
Confidence            3455565667799999996321             01    34555555555 4899976431       2356678888


Q ss_pred             HcCCc-eeecCCCCCCCCCCCccccC
Q 025831          126 TYGLL-KLGGSDYHGRGGHGESELGS  150 (247)
Q Consensus       126 ~~gLl-~TGGSDfHG~~~~~~~~lG~  150 (247)
                      +.|.. +|-|||.|.+.     .+|.
T Consensus       207 ~~g~~~i~lgSDAH~~~-----~vg~  227 (255)
T PRK05588        207 ELGGKYITLGSDAHNIE-----DIGN  227 (255)
T ss_pred             HcCCcEEEEECCCCCHH-----HHHh
Confidence            88876 79999999984     5664

>PRK08609 hypothetical protein; Provisional

Probab=95.80  E-value=0.024  Score=56.99  Aligned_cols=66  Identities=20%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             HHHcCCeEEecCCcC-----CC----ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCC
Q 025831           75 IHRTGGLAVLAHPWA-----LK----NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRG  141 (247)
Q Consensus        75 Ih~aGGvaVLAHP~~-----~~----~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~  141 (247)
                      +-+.|.+.|+|||.+     +.    +.+.+++.+++.| -.||+-.++.   ....+.+.|.++|+.+|-|||.|.+.
T Consensus       454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~  531 (570)
T PRK08609        454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTE  531 (570)
T ss_pred             HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChh
Confidence            345789999999973     11    1234555445555 5899987542   45788899999999999999999984

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=95.79  E-value=0.0014  Score=71.85  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=79.7

Q ss_pred             HhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCC-------------ceeCCCCCCHHHH
Q 025831            5 LNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP-------------AYSTGSEPLAEVA   71 (247)
Q Consensus         5 L~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~p-------------ayv~~~~~~~~Ea   71 (247)
                      ++..|++..++++.+++            .++++.|.+.   +.|..|+.++.+             .++. ..++++|+
T Consensus       426 LETTGL~~~~deIIEIg------------AV~V~~G~ii---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~Ea  489 (1437)
T PRK00448        426 VETTGLSAVYDEIIEIG------------AVKIKNGEII---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEV  489 (1437)
T ss_pred             hhhcCCCCchhhhheee------------eEEEeCCeEe---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHH
Confidence            45557777777766553            2445666553   567788877764             3343 67899999


Q ss_pred             HHHHHH-cCCeEEecCCcCCCCh--HHHHH-----HHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceeecCCCCCC
Q 025831           72 VQLIHR-TGGLAVLAHPWALKNP--AAIIR-----KLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR  140 (247)
Q Consensus        72 I~~Ih~-aGGvaVLAHP~~~~~~--~~li~-----~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TGGSDfHG~  140 (247)
                      ++.+++ +||.+++|||..++..  ...++     .+...++|++|+++..   .....+..+|+++|+..++   .|..
T Consensus       490 L~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~~---~HrA  566 (1437)
T PRK00448        490 LPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVELEH---HHRA  566 (1437)
T ss_pred             HHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCCCCC---CcCh
Confidence            999999 8999999999865421  11111     2234568899987653   3567889999999998864   3653

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]

Probab=95.67  E-value=0.051  Score=48.63  Aligned_cols=81  Identities=22%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHcCCeEEecCCcCCC-----------ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCce
Q 025831           66 PLAEVAVQLIHRTGGLAVLAHPWALK-----------NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLK  131 (247)
Q Consensus        66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~-----------~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~  131 (247)
                      ....+.+...-..+-+-|+|||+...           ...+.++.+.+. --.+|+-.+..   .+....++|+++|...
T Consensus       111 ~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~aleins~~~~~~~~~~~~~~~~e~G~~~  189 (237)
T COG1387         111 EDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKN-GKALEINSRPGRLDPNSEILRLARELGVKL  189 (237)
T ss_pred             HHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHh-CcEEeecCCcCccCchHHHHHHHHHhCCeE
Confidence            34456666677778899999998531           123445444344 45888877633   5688899999999999


Q ss_pred             eecCCCCCCCCCCCccccCcc
Q 025831          132 LGGSDYHGRGGHGESELGSVK  152 (247)
Q Consensus       132 TGGSDfHG~~~~~~~~lG~~~  152 (247)
                      |=|||.|.+.     .+|.+.
T Consensus       190 ~i~tDaH~~~-----~lg~~~  205 (237)
T COG1387         190 AIGTDAHRPG-----DLGDMY  205 (237)
T ss_pred             EeecCcCChh-----hcccch
Confidence            9999999984     588764

>PRK07329 hypothetical protein; Provisional

Probab=95.00  E-value=0.066  Score=47.86  Aligned_cols=72  Identities=25%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             HHHHHHHHHcCCeEEecCCcC---CC-----Ch-------HHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHHH
Q 025831           69 EVAVQLIHRTGGLAVLAHPWA---LK-----NP-------AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADT  126 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~---~~-----~~-------~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~~  126 (247)
                      ++.++++...|=+-|+|||..   +.     ..       +++++.+++.| -.||+-.+..       ......+.|++
T Consensus       128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~  206 (246)
T PRK07329        128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQ  206 (246)
T ss_pred             HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHH
Confidence            345556655557899999963   11     10       24555665655 4889986421       22456899999


Q ss_pred             cCCc-eeecCCCCCCC
Q 025831          127 YGLL-KLGGSDYHGRG  141 (247)
Q Consensus       127 ~gLl-~TGGSDfHG~~  141 (247)
                      +|.. +|-|||.|.+.
T Consensus       207 ~g~~~i~~gSDAH~~~  222 (246)
T PRK07329        207 LGGKLFSIGSDAHKLE  222 (246)
T ss_pred             cCCeEEEecCCCCCHH
Confidence            9975 89999999984

>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]

Probab=93.13  E-value=0.087  Score=49.87  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=64.9

Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEecCCcC-----CCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecCC
Q 025831           62 TGSEPLAEVAVQLIHRTGGLAVLAHPWA-----LKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD  136 (247)
Q Consensus        62 ~~~~~~~~EaI~~Ih~aGGvaVLAHP~~-----~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGSD  136 (247)
                      |+-+++-.|..+++++.||+...||-+.     |+..+.+-+-+-.+-+|+||.== +.+..++..+.+-+.+....-||
T Consensus       115 prv~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGL-SADtdmAD~I~el~~~pFLtNSD  193 (403)
T COG1379         115 PRVYLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGL-SADTDMADMIEELHRLPFLTNSD  193 (403)
T ss_pred             ceeeccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhcc-ccCchHHHHHHHhccCCcccccc
Confidence            4557889999999999999999999542     23222222222122356666533 34667788888889999999999


Q ss_pred             CCCCCCCCCccccC----ccCCHHHHHHHhc
Q 025831          137 YHGRGGHGESELGS----VKLPVLVLNDFLK  163 (247)
Q Consensus       137 fHG~~~~~~~~lG~----~~ip~~~l~~i~~  163 (247)
                      .|.+..   ..+|+    +.+++..++.|++
T Consensus       194 AHSp~p---hrLgREfn~f~v~~~sF~~~r~  221 (403)
T COG1379         194 AHSPYP---HRLGREFNQFEVEEISFEELRK  221 (403)
T ss_pred             cCCCch---hhhhhhhheeecccCCHHHHHH
Confidence            999631   24664    3455555555554

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3

Probab=89.28  E-value=1.1  Score=41.34  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             CCCCHHHHHHHHHHcC-CeEEecCCcC------C-CChHHHHHHHHHcCCcEEEEecCc-c-c-----HHHHHHHHHHcC
Q 025831           64 SEPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVYRSD-G-K-----LVAYTDLADTYG  128 (247)
Q Consensus        64 ~~~~~~EaI~~Ih~aG-GvaVLAHP~~------~-~~~~~li~~l~~~GlDGIEv~~~~-~-~-----~~~~~~lA~~~g  128 (247)
                      ...+++|+|+-.++-| ||.++.|=-.      + ...++.+..+.+.|+.||=+-.=. + +     -+.+.+-|.+|+
T Consensus        71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~  150 (273)
T PF10566_consen   71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK  150 (273)
T ss_dssp             TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred             CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence            5689999999999988 7888888543      2 124678889999999999885422 2 2     245667788999


Q ss_pred             CceeecCCCCCCCC
Q 025831          129 LLKLGGSDYHGRGG  142 (247)
Q Consensus       129 Ll~TGGSDfHG~~~  142 (247)
                      |++    ||||..+
T Consensus       151 Lmv----nfHg~~k  160 (273)
T PF10566_consen  151 LMV----NFHGATK  160 (273)
T ss_dssp             -EE----EETTS--
T ss_pred             cEE----EecCCcC
Confidence            999    9999854

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=87.96  E-value=1.8  Score=39.11  Aligned_cols=76  Identities=20%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCeEEecCCcCCCC---hHHHHHHHHHcCCcEEEEecCc------ccHHHHHHHHHHcCCceeecCCCC
Q 025831           68 AEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLGGSDYH  138 (247)
Q Consensus        68 ~~EaI~~Ih~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~------~~~~~~~~lA~~~gLl~TGGSDfH  138 (247)
                      ..++.--|..-|=++|+|||-|+..   ....+.+|++.|.=- -|-.++      ...+++...--+-||.-.-+||.|
T Consensus       118 a~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~s-Qvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAH  196 (254)
T COG4464         118 ADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAYS-QVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAH  196 (254)
T ss_pred             HHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccce-eechHhHHhhhhHHHHHHHHHHHHcccceeeecccc
Confidence            3456666788899999999998752   236788888877311 121222      133444444446799999999999


Q ss_pred             CCCCCC
Q 025831          139 GRGGHG  144 (247)
Q Consensus       139 G~~~~~  144 (247)
                      ....+|
T Consensus       197 n~~~R~  202 (254)
T COG4464         197 NVDKRP  202 (254)
T ss_pred             ccCCCC
Confidence            875443

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=84.30  E-value=0.5  Score=42.87  Aligned_cols=75  Identities=20%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHHHHcCCeEEecCCcCCC----ChHHHHHHHHHcCCcEEEEecCcc----cHHHHHHHHHHcCCceeecC
Q 025831           64 SEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG----KLVAYTDLADTYGLLKLGGS  135 (247)
Q Consensus        64 ~~~~~~EaI~~Ih~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~----~~~~~~~lA~~~gLl~TGGS  135 (247)
                      .....++.++.|+..++.+...||+...    ......+...  -.+.+|++|++.    -+.++.+.+..|+....++|
T Consensus        96 ~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h~--~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~  173 (258)
T COG0613          96 QQLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAHI--ARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS  173 (258)
T ss_pred             ccccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhhh--hhhhhccccccchHHHHHHHHhccCcccCcccccCH
Confidence            4578899999999999999999998421    1101112221  278999999875    46788888899999999999


Q ss_pred             CCCCC
Q 025831          136 DYHGR  140 (247)
Q Consensus       136 DfHG~  140 (247)
                      |-|-.
T Consensus       174 ~~~i~  178 (258)
T COG0613         174 EAHVG  178 (258)
T ss_pred             HHHHH
Confidence            99964

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=80.91  E-value=3.7  Score=36.07  Aligned_cols=43  Identities=14%  Similarity=0.021  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcCCceeecC
Q 025831           93 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLGGS  135 (247)
Q Consensus        93 ~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~gLl~TGGS  135 (247)
                      ..+.++.+++.|+||||.+.+.. +.+.+.++++++||-+++-+
T Consensus        16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~   59 (254)
T TIGR03234        16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFN   59 (254)
T ss_pred             HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEe
Confidence            45788888999999999987643 56788999999999888743

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=80.60  E-value=4.5  Score=35.78  Aligned_cols=41  Identities=15%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcCCceee
Q 025831           93 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG  133 (247)
Q Consensus        93 ~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~gLl~TG  133 (247)
                      .++.++.+.+.|+||||+..+.. +.+.+.++.+++||-+|+
T Consensus        17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~   58 (258)
T PRK09997         17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL   58 (258)
T ss_pred             HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence            45788999999999999987543 778999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
2yb1_A	292	Structure Of An Amidohydrolase From Chromobacterium		3e-06

>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And Phosphate. Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 29  RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW 88
           R H AR +V++G V++++  F +YL  G P Y +      E AV  I   GG+AV+AHP 
Sbjct: 134 RTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPG 193
Query: 89  ALKNPAAIIRKL----KDVGLHGLEV 110
                  +I +L    +  G  G+EV
Sbjct: 194 RYDMGRTLIERLILDFQAAGGQGIEV 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	4e-49
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	4e-44
2anu_A	255	Hypothetical protein TM0559; predicted metal-depen	2e-08

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292

 Score =  162 bits (412), Expect = 4e-49
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 20/194 (10%)

Query: 1   MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 60
           M   L    +   ++   +         R H AR +V++G V++++  F +YL  G P Y
Sbjct: 106 MGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGY 165

Query: 61  STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA----AIIRKLKDVGLHGLEVYRSD-- 114
            +      E AV  I   GG+AV+AHP            +I   +  G  G+EV      
Sbjct: 166 VSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHS 225

Query: 115 -GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAI 173
              +  +   AD +GL    GSD+H   G G  ++G  +       D   + RPIW    
Sbjct: 226 LDDMHKFALHADRHGLYASSGSDFHAP-GEGGRDVGHTE-------DLPPICRPIW---- 273

Query: 174 KEILESYADEPSDS 187
              LE+    P+D+
Sbjct: 274 -RELEARILRPADA 286

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301

 Score =  149 bits (379), Expect = 4e-44
 Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 20/179 (11%)

Query: 1   MILKLNKLKLPLKWEHVAKIA--GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP 58
           M+ +L++   P+ W+ V      G+    GR H+A A+V AG  E    AFA  +     
Sbjct: 117 MVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSK 175

Query: 59  AYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKN-----PAAIIRKLKDVGLHGLEVYRS 113
            Y     P     +  +   GG+ V AH    +          +  +   GL GLEV+  
Sbjct: 176 YYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHR 235

Query: 114 D---GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIW 169
                +      +A  + LL  GGSD+HG+G    + LG                R I 
Sbjct: 236 GNPPEQRERLLTIAARHDLLVTGGSDWHGKGKP--NGLGENLTD-------DDTVREIL 285

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Length = 255

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 12/90 (13%)

Query: 56  GGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV-------GLHGL 108
               Y   S P+ E  V+ +     L + AHP   K     +                  
Sbjct: 123 DVKEYVDPSLPVEE-IVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERFKDTFDAW 181

Query: 109 EVYRSDGKLVAYTDLADTYGLLKLGGSDYH 138
           E+   D       +         +  SD+H
Sbjct: 182 EIANRD----DLFNSVGVKKYRYVANSDFH 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	100.0
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	100.0
3e38_A	343	Two-domain protein containing predicted PHP-like d	99.24
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	99.19
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	99.04
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	98.93
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	98.92
2anu_A	255	Hypothetical protein TM0559; predicted metal-depen	98.61
2w9m_A	578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	97.96
3b0x_A	575	DNA polymerase beta family (X family); structural	97.19
3dcp_A	283	Histidinol-phosphatase; HISK, histidine biosynthes	95.5
1v77_A	212	PH1877P, hypothetical protein PH1877; RNAse P prot	93.65
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	84.05

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*

Probab=100.00  E-value=2e-40  Score=303.23  Aligned_cols=160  Identities=28%  Similarity=0.430  Sum_probs=143.8

Q ss_pred             ChHHHhhCCCCCCHHHHHHHhCCC--CCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHc
Q 025831            1 MILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRT   78 (247)
Q Consensus         1 ii~kL~~~G~~I~~eev~~~a~~~--~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~a   78 (247)
                      |+++|+++ ++|+||+|++.++++  ..+||||||++||++||+++++++|++||++|+|+|||..+++++|+|++||++
T Consensus       117 i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~I~~a  195 (301)
T 3o0f_A          117 MVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGA  195 (301)
T ss_dssp             HHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSCSSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHHHHHT
T ss_pred             HHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHcCCCccccCccCCCHHHHHHHHHHC
Confidence            68899999 999999999887532  369999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEecCCcCCC-----ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccC
Q 025831           79 GGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS  150 (247)
Q Consensus        79 GGvaVLAHP~~~~-----~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~  150 (247)
                      ||++|||||+++.     ...+++.+|++.|+|||||||+++   +++++.++|+++||++||||||||+. + +..+|.
T Consensus       196 GGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~~~~~~~~~lA~~~gL~~tgGSD~Hg~~-~-~~~lG~  273 (301)
T 3o0f_A          196 GGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVTGGSDWHGKG-K-PNGLGE  273 (301)
T ss_dssp             TCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEECCCBCGGG-S-SCCTTS
T ss_pred             CCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEcCCCCCC-C-CCcCCC
Confidence            9999999997653     246789999999999999999876   56899999999999999999999974 3 468999


Q ss_pred             ccCCHHHHHHHhc
Q 025831          151 VKLPVLVLNDFLK  163 (247)
Q Consensus       151 ~~ip~~~l~~i~~  163 (247)
                      +.+|++.++.|++
T Consensus       274 ~~~~~~~~~~l~~  286 (301)
T 3o0f_A          274 NLTDDDTVREILC  286 (301)
T ss_dssp             SCBCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHH
Confidence            9999987776654

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A

Probab=100.00  E-value=4.7e-33  Score=251.35  Aligned_cols=163  Identities=29%  Similarity=0.488  Sum_probs=139.7

Q ss_pred             ChHHHhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCC
Q 025831            1 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG   80 (247)
Q Consensus         1 ii~kL~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGG   80 (247)
                      |+++|++.|++++++++.+.+.++..+||||||++|++.||+++..++|++||+.++|+|+|..+++++++|++|+++||
T Consensus       106 ~~~~l~~~g~~~~~~~v~~~a~~~~~igr~H~a~~lv~~g~~~~~~~~f~~yl~~~~~~~v~~~~~~~~~~i~~i~~~Gg  185 (292)
T 2yb1_A          106 MGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGG  185 (292)
T ss_dssp             HHHHHHHTTCTTHHHHHHTTCSSGGGCCHHHHHHHHHHTTSSSSHHHHHHHSSSTTSTTCCCCCCBCHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcCHHHHHHhccCCCCcCHHHHHHHHHHcCCcCCHHHHHHHHHccCCceeccCCCCCHHHHHHHHHHcCC
Confidence            45788999999999999988655457899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcCCCC----hHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCcc-
Q 025831           81 LAVLAHPWALKN----PAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK-  152 (247)
Q Consensus        81 vaVLAHP~~~~~----~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~~-  152 (247)
                      ++|+|||+++..    ..++++++++.|++||||+++++   ++..+.++|+++||++|+|||||++. +++..+|... 
T Consensus       186 ~~VlAHP~r~~~~~~~~~~~l~~l~~~g~~giEv~~~~~~~~~~~~~~~~a~~~gl~~t~GSDaH~~~-~~~~~lG~~~~  264 (292)
T 2yb1_A          186 MAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFALHADRHGLYASSGSDFHAPG-EGGRDVGHTED  264 (292)
T ss_dssp             EEEECCGGGSSCCHHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHHHHHHTCEEEEECCBCSTT-C---CTTCCCC
T ss_pred             EEEEECcCccccchhhHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEeeCCCCcC-CCCCcCCCCCC
Confidence            999999998763    24678888889999999999876   36789999999999999999999985 3566899874 


Q ss_pred             CCHHHHHHHhccccccchhH
Q 025831          153 LPVLVLNDFLKVARPIWCGA  172 (247)
Q Consensus       153 ip~~~l~~i~~~~~piw~~~  172 (247)
                      +|.        ...++|..|
T Consensus       265 ~~~--------~~~~~~~~~  276 (292)
T 2yb1_A          265 LPP--------ICRPIWREL  276 (292)
T ss_dssp             CCT--------TCCBHHHHS
T ss_pred             ChH--------HHHHHHHHH
Confidence            343        346666554

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}

Probab=99.24  E-value=1.3e-11  Score=114.44  Aligned_cols=107  Identities=15%  Similarity=0.028  Sum_probs=77.3

Q ss_pred             ceeCCCCCCHHHHHHHHHHcCCeEEecCCcCCCC-h-----HHHHHHHH-HcCCcEEEEecCcccHHHHHHHHHHcCCce
Q 025831           59 AYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKN-P-----AAIIRKLK-DVGLHGLEVYRSDGKLVAYTDLADTYGLLK  131 (247)
Q Consensus        59 ayv~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~-~-----~~li~~l~-~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~  131 (247)
                      .+.|....+++++++.+++.||++|+|||++... .     ..-++++. ..++|||||||+...+.++.++|+.++|..
T Consensus       110 ~~~~~~~~~~~eli~~v~~~Ggl~iiAHP~r~~~~~~g~~~~~~~~e~l~~~~iDaIEv~N~~~~n~~A~~la~~~~l~~  189 (343)
T 3e38_A          110 DSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCLDKNLTM  189 (343)
T ss_dssp             CSGGGCCSSHHHHHHHHHHTTCEEEECCTTCTTTSSSCCCCCHHHHHHHHTTCCSEEEEEETTEECTHHHHHHHHHTCEE
T ss_pred             CCCCCcccCHHHHHHHHHHCCCEEEEeCCCCcccCccccccccchHHHhcccCccEEEEcCCCCccHHHHHHHhhCCCce
Confidence            3455557899999999999999999999998531 0     01134444 378999999998865667789999999999


Q ss_pred             eecCCCCCCCCC---CCccccCc--------cCCHHHHHHHhccc
Q 025831          132 LGGSDYHGRGGH---GESELGSV--------KLPVLVLNDFLKVA  165 (247)
Q Consensus       132 TGGSDfHG~~~~---~~~~lG~~--------~ip~~~l~~i~~~~  165 (247)
                      +||||+|++...   .+..+|+.        ..+.+++++|+++.
T Consensus       190 ~~GSDaH~~~~~~y~~~~~iGr~~T~v~~~~~S~e~ll~ALr~Gr  234 (343)
T 3e38_A          190 IGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRR  234 (343)
T ss_dssp             EEECCBCSCHHHHCCGGGTCCCCEEEEEESSSSHHHHHHHHHTTC
T ss_pred             EeECCCCCCcccccccccccccceEEEecCCCCHHHHHHHHHcCC
Confidence            999999997200   11234543        13566788888743

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=99.19  E-value=3.9e-11  Score=103.28  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             CceeCCCC-CCHHHHHHHHHHcCCeEEecCCcCCC---ChHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHH
Q 025831           58 PAYSTGSE-PLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLA  124 (247)
Q Consensus        58 payv~~~~-~~~~EaI~~Ih~aGGvaVLAHP~~~~---~~~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~lA  124 (247)
                      ++|.|... ..+++++++++ +||++|+|||.++.   ....+++.+++.| ++||+++++.         ....+.++|
T Consensus       103 ~~~~~~~~~~~~~~~~~~i~-~g~~~vlaHp~~~~~~~~~~~~~~~~~~~g-~~iEvn~~~~~~~~~g~~~~~~~~~~~~  180 (245)
T 1m65_A          103 PVFAPHDKATNTQAMIATIA-SGNVHIISHPGNPKYEIDVKAVAEAAAKHQ-VALEINNSSFLHSRKGSEDNCREVAAAV  180 (245)
T ss_dssp             TTSCCCCHHHHHHHHHHHHH-TSCCSEECCTTCTTSCCCHHHHHHHHHHHT-CEEEEETTC----------CHHHHHHHH
T ss_pred             CccCcchHHHHHHHHHHHHh-CCCCCEEECCCCccchhHHHHHHHHHHHcC-CEEEEECCCCcccCCCCCCchHHHHHHH
Confidence            34544432 45678899898 99999999998754   2356788898999 7999998753         357888999


Q ss_pred             HHcCCceeecCCCCCCC
Q 025831          125 DTYGLLKLGGSDYHGRG  141 (247)
Q Consensus       125 ~~~gLl~TGGSDfHG~~  141 (247)
                      +++|+.+|+|||+|++.
T Consensus       181 ~~~g~~~~~gSDaH~~~  197 (245)
T 1m65_A          181 RDAGGWVALGSDSHTAF  197 (245)
T ss_dssp             HHHTCCEEEECCBSSGG
T ss_pred             HHcCCEEEEECCCCChH
Confidence            99999999999999974

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=99.04  E-value=2.3e-10  Score=99.88  Aligned_cols=74  Identities=22%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHcCCeEEecCCcCCCC---hHHHHHHHHHcCCcEEEEecCcc-----------cHHHHHHHHHHcCCcee
Q 025831           67 LAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG-----------KLVAYTDLADTYGLLKL  132 (247)
Q Consensus        67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~~-----------~~~~~~~lA~~~gLl~T  132 (247)
                      .+.+++..++++|+++|+|||.++..   ..+++..+++.|+. +|+.+++.           ....+.+++.++|++.|
T Consensus       121 ~~~~~i~~i~~~g~~~vlaHp~r~~~~~~~~~~l~~l~~~G~~-lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~  199 (247)
T 2wje_A          121 DIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCY-TQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHV  199 (247)
T ss_dssp             HHHHHHHHHHTTTCEEEETTGGGCGGGTTCHHHHHHHHHTTCE-EEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHHHHCCCcEEEEehhhHHHHhhCHHHHHHHHHCCCE-EEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEE
Confidence            35779999999999999999998752   35788999999997 99987543           23678888899999999


Q ss_pred             ecCCCCCCC
Q 025831          133 GGSDYHGRG  141 (247)
Q Consensus       133 GGSDfHG~~  141 (247)
                      .|||+|++.
T Consensus       200 ~GSDaH~~~  208 (247)
T 2wje_A          200 IASDMHNLD  208 (247)
T ss_dssp             EECCBCCSS
T ss_pred             EEeCCCCCc
Confidence            999999984

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=98.93  E-value=1.9e-09  Score=93.67  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHcCCeEEecCCcCCC---C----------hHHHHHHHHHcCCcEEEEecCcc--------cHHHHHHHHHH
Q 025831           68 AEVAVQLIHRTGGLAVLAHPWALK---N----------PAAIIRKLKDVGLHGLEVYRSDG--------KLVAYTDLADT  126 (247)
Q Consensus        68 ~~EaI~~Ih~aGGvaVLAHP~~~~---~----------~~~li~~l~~~GlDGIEv~~~~~--------~~~~~~~lA~~  126 (247)
                      .++++++|+. ||++|+|||.++.   .          ...+++.+++.| .+||+.+++.        ....+.++|++
T Consensus       137 ~~~~~~~i~~-g~~~vlaHp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~iEvn~~~~~~~~~~~~~~~~~~~~~~~  214 (267)
T 2yxo_A          137 FQEVEKAARS-GLFHAIGHLDLPKKFGHRLPEEALLELAEPALRAVAEAG-LFLDVNTAGLRRPAKEVYPAPALLRRARE  214 (267)
T ss_dssp             HHHHHHHHTS-SCCSEESCTTGGGTTSCCCCHHHHHHHHHHHHHHHHHHT-CEEEEEGGGGGSTTCSCBSCHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCEEeCccHHHHhCCCCChHHHHHHHHHHHHHHHHcC-CEEEEEchHhcCCCCCCCCCHHHHHHHHH
Confidence            3678899986 9999999998742   1          235677888888 6999987642        35889999999


Q ss_pred             cCCceeecCCCCCCC
Q 025831          127 YGLLKLGGSDYHGRG  141 (247)
Q Consensus       127 ~gLl~TGGSDfHG~~  141 (247)
                      +|+.+|+|||+|++.
T Consensus       215 ~g~~~~~gSDaH~~~  229 (267)
T 2yxo_A          215 LGIGLVLGSDAHRPE  229 (267)
T ss_dssp             HTCCEEEECCBSSGG
T ss_pred             cCCCEEEecCCCCHH
Confidence            999999999999974

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=98.92  E-value=1.3e-09  Score=97.09  Aligned_cols=75  Identities=20%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHcCCeEEecCCcCCCC---hHHHHHHHHHcCCcEEEEecCcc------cHHHHHHHHHHcCCceeecCC
Q 025831           66 PLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG------KLVAYTDLADTYGLLKLGGSD  136 (247)
Q Consensus        66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~~------~~~~~~~lA~~~gLl~TGGSD  136 (247)
                      ..+.++|..|..+|+++|||||.+|..   ..+.+.++++.|. ++|+..++.      ....+.+.|.++|++.|.|||
T Consensus       116 ~~~~~~l~~i~~~g~v~ILAHPeRy~~~~~~~~~l~~l~~~G~-~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSD  194 (262)
T 3qy7_A          116 RYAEQLFYDLQLKGYIPVIAHPERNREIRENPSLLYHLVEKGA-ASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASD  194 (262)
T ss_dssp             TTHHHHHHHHHHTTCEEEEECGGGCHHHHHCTHHHHHHHHTTC-EEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECC
T ss_pred             HHHHHHHHHHHHCCCcEEEECCCccccccccHHHHHHHHHCCC-EEEEECCccCcccchHHHHHHHHHHhCCCeEEEEcc
Confidence            468899999999999999999998752   1257889999995 899987542      356788888999999999999


Q ss_pred             CCCCC
Q 025831          137 YHGRG  141 (247)
Q Consensus       137 fHG~~  141 (247)
                      +|++.
T Consensus       195 aH~~~  199 (262)
T 3qy7_A          195 AHNVK  199 (262)
T ss_dssp             BCSSS
T ss_pred             CCCCC
Confidence            99985

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1

Probab=98.61  E-value=2.9e-08  Score=86.88  Aligned_cols=72  Identities=17%  Similarity=0.198  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHcCCeEEecCCcCCCChHH-----H---HHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecCC
Q 025831           65 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAA-----I---IRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD  136 (247)
Q Consensus        65 ~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~-----l---i~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGSD  136 (247)
                      ...++++++.+++.|+++|+|||.++.....     .   .+.+ ...+++||++++..-    .++|+++|+.+|+|||
T Consensus       131 ~~~~~~~l~~i~~~g~~~ilaHp~~~~~~~~~~~~~~~~~~~~~-~~~~~aiEin~~~~~----~~~~~~~g~~~~~gSD  205 (255)
T 2anu_A          131 SLPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERF-KDTFDAWEIANRDDL----FNSVGVKKYRYVANSD  205 (255)
T ss_dssp             TSCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTT-TTTCSEEEEEETTEE----CHHHHHTTCCEEEECC
T ss_pred             CCCHHHHHHHHHHCCCeEEEeCCCccccccccccccccchhhhh-hccCcEEEEcCCCch----hhHHHHcCCceEeccC
Confidence            3589999999999999999999997653211     0   1122 236899999997632    1368899999999999


Q ss_pred             CCCCC
Q 025831          137 YHGRG  141 (247)
Q Consensus       137 fHG~~  141 (247)
                      +|.+.
T Consensus       206 AH~~~  210 (255)
T 2anu_A          206 FHELW  210 (255)
T ss_dssp             BCSGG
T ss_pred             CCCCc
Confidence            99974

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}

Probab=97.96  E-value=8.5e-06  Score=79.80  Aligned_cols=70  Identities=16%  Similarity=0.036  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCeEEecCCcCC---------CChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025831           69 EVAVQLIHRTGGLAVLAHPWAL---------KNPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSD  136 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~~---------~~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSD  136 (247)
                      ++.+++++ .|++.|+|||...         .+.+.+++.+++.| .+||+.+++.   .+..+.++|++ |+.+|.|||
T Consensus       440 ~~~~~ai~-~g~v~IlaHP~~~~~~~~~~~~~~~~~il~~~~e~g-~~lEIN~~~~r~~~~~~~~~~a~e-Gl~i~igSD  516 (578)
T 2w9m_A          440 ERLIRAVS-HPLVTVLGHATGRLLLRRPGYALDLDAVLGACEANG-TVVEINANAARLDLDWREALRWRE-RLKFAINTD  516 (578)
T ss_dssp             HHHHHHHT-CSSCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHT-CEEEEECSTTTCBSCHHHHHHHTT-TCCEEEECC
T ss_pred             HHHHHHHh-cCCCeEEECcchhhcCCCcCchhhHHHHHHHHHHCC-CEEEEECCCCCcCcHHHHHHHHHc-CCEEEEECC
Confidence            34555554 5999999999742         13456788888887 4999988753   46788999999 999999999


Q ss_pred             CCCCC
Q 025831          137 YHGRG  141 (247)
Q Consensus       137 fHG~~  141 (247)
                      +|.+.
T Consensus       517 AH~~~  521 (578)
T 2w9m_A          517 AHVPG  521 (578)
T ss_dssp             CSSGG
T ss_pred             CCChh
Confidence            99974

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*

Probab=97.19  E-value=0.00055  Score=66.80  Aligned_cols=71  Identities=24%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCeEEecCCcC-C-----C---ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025831           69 EVAVQLIHRTGGLAVLAHPWA-L-----K---NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSD  136 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~-~-----~---~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSD  136 (247)
                      ++.+++++ .|++.|+|||.. +     .   ..+.+++.+++.| .+||+-.++.   ....+.++|.++|+..+.|||
T Consensus       452 ~~l~~~i~-~g~v~IlaHp~~r~~~~r~~~~~~~~~il~~~~~~g-~~lEIN~~~~~~~~~~~~~~~a~e~G~~~vigSD  529 (575)
T 3b0x_A          452 KRLLKALE-NPFVHVLAHPTARLLGRRAPIEADWEAVFQKAKEKG-VAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTD  529 (575)
T ss_dssp             HHHHHHTT-CTTCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHT-CEEEEECCTTTCBSCHHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHh-cCCCeEEECCchhhcCCCcCchHHHHHHHHHHHHcC-CEEEEeCCCCcCCchHHHHHHHHHcCCeEEEECC
Confidence            34455554 799999999972 1     1   2345777777766 6999965432   346788999999999999999


Q ss_pred             CCCCC
Q 025831          137 YHGRG  141 (247)
Q Consensus       137 fHG~~  141 (247)
                      .|.+.
T Consensus       530 AH~~~  534 (575)
T 3b0x_A          530 AHQTD  534 (575)
T ss_dssp             BSSGG
T ss_pred             CCChH
Confidence            99974

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}

Probab=95.50  E-value=0.042  Score=48.87  Aligned_cols=76  Identities=20%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             HHHHHHHHc-C--CeEEecCCcCC---C----------C------hHHHHHHHHHcCCcEEEEecCcc---------cHH
Q 025831           70 VAVQLIHRT-G--GLAVLAHPWAL---K----------N------PAAIIRKLKDVGLHGLEVYRSDG---------KLV  118 (247)
Q Consensus        70 EaI~~Ih~a-G--GvaVLAHP~~~---~----------~------~~~li~~l~~~GlDGIEv~~~~~---------~~~  118 (247)
                      ..+++|... |  -+-|++||...   .          .      .+++++.+++.|+ +||+-.++.         ...
T Consensus       162 ~~~~~i~~~l~~~~~dilgH~Dlir~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~-~lEiN~~~l~~~~~~~~yp~~  240 (283)
T 3dcp_A          162 GVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDY-ELDFNTAGLFKPLCGETYPPK  240 (283)
T ss_dssp             HHHHHHHCCCCTTCCSEECCTTGGGTTGGGGTCCGGGCCHHHHHHHHHHHHHHHHHTC-EEEEECGGGGSTTCCSCBSCH
T ss_pred             HHHHHHHhCccccCCCEEECCcHHHHcCcccccccccccHHHHHHHHHHHHHHHHcCC-EEEEechHhcCCCCCCcCCHH
Confidence            445555542 1  33699999731   1          1      2355666666664 899987531         247


Q ss_pred             HHHHHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025831          119 AYTDLADTYGLLKLGGSDYHGRGGHGESELGSV  151 (247)
Q Consensus       119 ~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~  151 (247)
                      .+.++|+++|..++-|||.|.+.     .+|..
T Consensus       241 ~~~~~~~~~g~~i~igSDAH~~~-----~vg~~  268 (283)
T 3dcp_A          241 KIVTLASELQIPFVYGSDSHGVQ-----DIGRG  268 (283)
T ss_dssp             HHHHHHHHTTCCEEEECCBSSGG-----GTTTT
T ss_pred             HHHHHHHHcCCCEEEEcCCCCHH-----HHhCh
Confidence            88999999999999999999974     57753

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*

Probab=93.65  E-value=0.15  Score=43.27  Aligned_cols=72  Identities=13%  Similarity=0.177  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHcCCeEEecCCcCCC---C-hHHHHHHHHHcCCcEEEEecCcc---c----------HHHHHHHHHHcCC
Q 025831           67 LAEVAVQLIHRTGGLAVLAHPWALK---N-PAAIIRKLKDVGLHGLEVYRSDG---K----------LVAYTDLADTYGL  129 (247)
Q Consensus        67 ~~~EaI~~Ih~aGGvaVLAHP~~~~---~-~~~li~~l~~~GlDGIEv~~~~~---~----------~~~~~~lA~~~gL  129 (247)
                      +.+.--.++ +. .|=|++||+..+   . ...+++..++.|+ .+|+-+++.   .          ...+.++|++||.
T Consensus        85 ~~~~n~~a~-~~-~vDII~Hp~~~~~~~~~~~~~a~~A~e~gv-~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~  161 (212)
T 1v77_A           85 DLRVIRYSI-EK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNV-ALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKV  161 (212)
T ss_dssp             CHHHHHHHH-HT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTC-EEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHH-hC-CCCEEecccccccCCCCCHHHHHHHHHCCe-EEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            444444444 45 799999998542   1 2466776777775 899988652   1          1367899999999


Q ss_pred             ceeecCCCCCCC
Q 025831          130 LKLGGSDYHGRG  141 (247)
Q Consensus       130 l~TGGSDfHG~~  141 (247)
                      .++-|||.|.+.
T Consensus       162 ~ivisSDAh~~~  173 (212)
T 1v77_A          162 RRFLTSSAQEKW  173 (212)
T ss_dssp             CEEEECCCSSGG
T ss_pred             CEEEeCCCCChh
Confidence            999999999974

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=84.05  E-value=2.1  Score=36.21  Aligned_cols=42  Identities=12%  Similarity=-0.018  Sum_probs=35.7

Q ss_pred             ChHHHHHHHHHcCCcEEEEecCc-ccHHHHHHHHHHcCCceee
Q 025831           92 NPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG  133 (247)
Q Consensus        92 ~~~~li~~l~~~GlDGIEv~~~~-~~~~~~~~lA~~~gLl~TG  133 (247)
                      ..++.++.+.+.|+||||+..+. .+.+.+.++++++||-+++
T Consensus        24 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~   66 (269)
T 3ngf_A           24 PFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVL   66 (269)
T ss_dssp             CHHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEE
Confidence            35688999999999999998765 3678999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d2anua1	229	c.6.3.1 (A:5-233) Hypothetical protein TM0559 {The	2e-04

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 12/123 (9%)

Query: 29  RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW 88
                  ++  G            +      Y   S P+ E+ V+ +     L + AHP 
Sbjct: 80  AWEEYGMILIPGVEITNNTDLYHIVAVDVKEYVDPSLPVEEI-VEKLKEQNALVIAAHPD 138

Query: 89  ALKNPAAIIRKLK-------DVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRG 141
             K     +                  E+   D       +         +  SD+H   
Sbjct: 139 RKKQDEEHLSWYLWANMERFKDTFDAWEIANRD----DLFNSVGVKKYRYVANSDFHELW 194

Query: 142 GHG 144
              
Sbjct: 195 HVY 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d2anua1	229	Hypothetical protein TM0559 {Thermotoga maritima [	98.95
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	97.44
d1v77a_	202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	92.65
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	90.52
d1k77a_	260	Hypothetical protein YgbM (EC1530) {Escherichia co	80.22

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=3e-10  Score=93.44  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=68.3

Q ss_pred             CCCceeCCCCCCHHHHHHHHHHcCCeEEecCCcCCCChH-------HHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC
Q 025831           56 GGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA-------AIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG  128 (247)
Q Consensus        56 g~payv~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~-------~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g  128 (247)
                      +.+.|++ ...+..++++.+++.||++|+|||+......       ....+.....++|||++++..    +.++|++++
T Consensus       107 ~~~~~~~-~~~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~~----~~~~~~~~~  181 (229)
T d2anua1         107 DVKEYVD-PSLPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERFKDTFDAWEIANRDD----LFNSVGVKK  181 (229)
T ss_dssp             SCCSCCC-TTSCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTTTTTCSEEEEEETTE----ECHHHHHTT
T ss_pred             CCccccC-cccchHHHHHHHHhCCCeEEcccccccccchhhhhhhhHhHHHHHhccCcEEEeccHHH----HHHHHHHcC
Confidence            3344444 4568899999999999999999998653211       111122345699999998653    356889999


Q ss_pred             CceeecCCCCCCCCCCCccccCcc-------CCHHHHHHHhc
Q 025831          129 LLKLGGSDYHGRGGHGESELGSVK-------LPVLVLNDFLK  163 (247)
Q Consensus       129 Ll~TGGSDfHG~~~~~~~~lG~~~-------ip~~~l~~i~~  163 (247)
                      +.+++|||+|.+.     .+|...       .+..++++|++
T Consensus       182 l~~v~~SDaH~~~-----~~G~~~~~~~~~~t~~~i~~alr~  218 (229)
T d2anua1         182 YRYVANSDFHELW-----HVYSWKTLVKSEKNIEAIKEAIRK  218 (229)
T ss_dssp             CCEEEECCBCSGG-----GGSSEEEEEEECSSHHHHHHHHHH
T ss_pred             CCEEeeCCCCCcc-----ccCCeEEEEecCCCHHHHHHHHHC
Confidence            9999999999863     477652       24556666665

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00033  Score=55.70  Aligned_cols=76  Identities=20%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCeEEecCCcCCC---ChHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHHHHcCCceeecCCC
Q 025831           70 VAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGGSDY  137 (247)
Q Consensus        70 EaI~~Ih~aGGvaVLAHP~~~~---~~~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~lA~~~gLl~TGGSDf  137 (247)
                      +........|.+.+++||....   ........+ ......+|+.....         ....+.++|+++|+.+++|||+
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~v~~SDa  192 (244)
T d1m65a_         114 QAMIATIASGNVHIISHPGNPKYEIDVKAVAEAA-AKHQVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALGSDS  192 (244)
T ss_dssp             HHHHHHHHTSCCSEECCTTCTTSCCCHHHHHHHH-HHHTCEEEEETTC----------CHHHHHHHHHHHTCCEEEECCB
T ss_pred             HHHHHHHHccCCccccccccccchhhHHHHHHHH-HhhhhhhhhcccccccCCccccchHHHHHHHHHHCCCcEEEECCc
Confidence            4444556689999999998653   222333333 33456888876531         3567899999999999999999


Q ss_pred             CCCCCCCCccccCc
Q 025831          138 HGRGGHGESELGSV  151 (247)
Q Consensus       138 HG~~~~~~~~lG~~  151 (247)
                      |.+.     .+|.+
T Consensus       193 H~~~-----~~g~~  201 (244)
T d1m65a_         193 HTAF-----TMGEF  201 (244)
T ss_dssp             SSGG-----GTTCC
T ss_pred             CCHh-----hhhhH
Confidence            9863     56643

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.65  E-value=0.12  Score=42.27  Aligned_cols=71  Identities=10%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCCeEEecCCcCCC----ChHHHHHHHHHcCCcEEEEecCcc-------------cHHHHHHHHHHcCCce
Q 025831           69 EVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG-------------KLVAYTDLADTYGLLK  131 (247)
Q Consensus        69 ~EaI~~Ih~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~-------------~~~~~~~lA~~~gLl~  131 (247)
                      ..+-+.+-+. ++=||+||+...    ....+.+..++.|+ ++|+-+++-             ....+.++|++||..+
T Consensus        80 ~~~Nr~A~e~-~VDiL~~p~~~r~~~~~~hvlak~A~e~gV-~lEI~~s~ll~~~~~~R~~~i~~~~~~l~l~kky~~pi  157 (202)
T d1v77a_          80 LRVIRYSIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNV-ALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRR  157 (202)
T ss_dssp             HHHHHHHHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTC-EEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHhC-CccEEecCccccCcccccHHHHHHHHHCCe-EEEEEchhhhccCcccHHHHHHHHHHHHHHHHhcCCcE
Confidence            4566677777 599999998532    12345566667888 999986531             1246789999999999


Q ss_pred             eecCCCCCCC
Q 025831          132 LGGSDYHGRG  141 (247)
Q Consensus       132 TGGSDfHG~~  141 (247)
                      +-+||.|.+.
T Consensus       158 VisSdAh~~~  167 (202)
T d1v77a_         158 FLTSSAQEKW  167 (202)
T ss_dssp             EEECCCSSGG
T ss_pred             EEecCCCChh
Confidence            9999999863

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.14  Score=39.70  Aligned_cols=63  Identities=13%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             CCCHHHHHHHHHHcCCeEEe---cC-CcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCC
Q 025831           65 EPLAEVAVQLIHRTGGLAVL---AH-PWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGL  129 (247)
Q Consensus        65 ~~~~~EaI~~Ih~aGGvaVL---AH-P~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gL  129 (247)
                      ....++++++.++.|..+|.   || |....+.+..++.+.+.|++..+|++  .+.+++.++++++++
T Consensus       169 ~~~~~~~l~~a~~~g~~~v~~SDaH~~~~~g~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~l~~~~~  235 (244)
T d1m65a_         169 EDNCREVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILN--VSPRRLLNFLESRGM  235 (244)
T ss_dssp             --CHHHHHHHHHHHTCCEEEECCBSSGGGTTCCHHHHHHHHHTTCCGGGBGG--GCHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHHCCCcEEEECCcCCHhhhhhHHHHHHHHHHcCCCHHHeee--CCHHHHHHHHHHcCC
Confidence            34567899999999999999   99 76655666677777788999888887  356778889998776

>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Hypothetical protein YgbM (EC1530)
domain: Hypothetical protein YgbM (EC1530)
species: Escherichia coli [TaxId: 562]

Probab=80.22  E-value=0.8  Score=35.62  Aligned_cols=40  Identities=8%  Similarity=0.011  Sum_probs=32.7

Q ss_pred             HHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcCCceee
Q 025831           94 AAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG  133 (247)
Q Consensus        94 ~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~gLl~TG  133 (247)
                      .+.++..+++|+||||+..+.. +...+.++.+++|+.+++
T Consensus        18 ~e~i~~a~~~Gf~gIEl~~~~~~~~~~~~~~l~~~gl~~~~   58 (260)
T d1k77a_          18 IERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLAL   58 (260)
T ss_dssp             GGHHHHHHHHTCSEEECSCCTTSCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhCCCEEEECCCCCCCHHHHHHHHHHCCCcEEE
Confidence            4678888899999999987753 677888999999997754