Query 025832
Match_columns 247
No_of_seqs 171 out of 471
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 5.1E-60 1.1E-64 415.7 15.2 195 39-235 12-212 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 2.8E-46 6E-51 313.0 9.8 136 41-176 1-149 (151)
3 PF04970 LRAT: Lecithin retino 94.4 0.021 4.5E-07 45.9 1.6 38 108-148 82-120 (125)
4 PF05608 DUF778: Protein of un 93.7 0.16 3.5E-06 42.9 5.7 40 113-152 75-114 (136)
5 PF09601 DUF2459: Protein of u 72.0 5.2 0.00011 34.7 3.9 41 111-152 97-160 (173)
6 PF08405 Calici_PP_N: Viral po 62.4 21 0.00046 34.5 6.1 96 63-175 21-122 (358)
7 PF13387 DUF4105: Domain of un 56.0 16 0.00035 31.0 3.9 54 104-157 97-154 (176)
8 PF11022 DUF2611: Protein of u 50.4 15 0.00032 28.0 2.4 28 151-178 7-34 (71)
9 KOG3150 Uncharacterized conser 50.1 32 0.00068 30.4 4.7 51 103-153 78-131 (182)
10 cd01781 AF6_RA_repeat2 Ubiquit 37.8 70 0.0015 25.9 4.6 52 87-139 2-55 (100)
11 PF04046 PSP: PSP; InterPro: 33.7 38 0.00082 24.0 2.2 25 143-167 5-31 (48)
12 smart00581 PSP proline-rich do 29.0 52 0.0011 23.9 2.3 24 144-167 10-35 (54)
13 PF13964 Kelch_6: Kelch motif 27.9 53 0.0012 21.6 2.1 20 64-83 3-22 (50)
14 PF04412 DUF521: Protein of un 27.3 61 0.0013 31.9 3.2 46 109-155 267-316 (400)
15 PF11931 DUF3449: Domain of un 25.9 23 0.00049 31.8 0.0 20 153-172 85-104 (196)
16 cd02998 PDI_a_ERp38 PDIa famil 25.8 29 0.00063 25.3 0.6 46 115-160 34-80 (105)
17 TIGR02117 chp_urease_rgn conse 25.2 96 0.0021 27.8 3.8 41 110-151 126-190 (208)
18 PF15643 Tox-PL-2: Papain fold 24.5 42 0.00092 27.2 1.3 45 113-164 1-45 (100)
19 PF07646 Kelch_2: Kelch motif; 24.4 75 0.0016 21.0 2.4 17 65-81 4-20 (49)
20 PF12419 DUF3670: SNF2 Helicas 23.7 92 0.002 25.8 3.2 25 99-123 71-95 (141)
21 cd02860 Pullulanase_N_term Pul 22.1 1.5E+02 0.0034 22.4 4.0 51 22-80 9-66 (100)
22 KOG3967 Uncharacterized conser 22.1 27 0.00059 32.6 -0.2 58 71-141 14-71 (297)
23 PF01344 Kelch_1: Kelch motif; 20.5 92 0.002 19.9 2.1 19 65-83 4-22 (47)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-60 Score=415.74 Aligned_cols=195 Identities=52% Similarity=0.902 Sum_probs=179.0
Q ss_pred CCccEEEEEEeCCCCccccccccceeEeeeEEEeCeEEEeccccCCCCCeEeecCCCCCCCCeEEEEEecceecCHHHHH
Q 025832 39 GNAPVYLNVYDLTPANGYVYWAGLGIFHTGVEVYGIEYAFGAHDFASSGVFEVEPRQCPGFRFRKSILMGTTCLDPIEVR 118 (247)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~~~~~GlGIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~fresI~LG~T~lt~~e~~ 118 (247)
...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|++||+++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccCcchHHHHHHHHhcCCCCChHHHHHHhhh--hhccccCCccccccCCCCCCC----CCCC
Q 025832 119 EFMERQSANYNGDTYHLIVKNCNHFCEDICYKLTGKPIPKWVNRLARIG--LLCNCILPETLKTSTVPHDPN----FQGC 192 (247)
Q Consensus 119 ~~l~~L~~~f~g~tYhLL~rNCNHFS~el~~~L~Gk~IP~wInrLA~iG--~~~~c~lP~~l~~~~~~~~p~----~~~~ 192 (247)
+||++|+++|+|++||||.||||||||++|++|+||+||+||||||++| .+|+|++|.....+++.+.+. ..++
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~~~ 171 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFDEE 171 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccCcc
Confidence 9999999999999999999999999999999999999999999999999 899999998888887776554 3456
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCCCCChhh
Q 025832 193 DSEKKRLRTAFSCWSSISMPQKEVSISSLFLHSHYKGCLPPWE 235 (247)
Q Consensus 193 ~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (247)
+.++++++|..| ++.++++.+.+.++.++-+.-.++..++.
T Consensus 172 ~~~~~~~~s~~s--~~~~~~~~s~s~~~~~~~~~~~~~~~~~~ 212 (214)
T KOG0324|consen 172 ENSKKKLASSGS--PSRSAPLLSASDSGLILLSGPSLKRERNT 212 (214)
T ss_pred ccccccccccCC--CcccCCCCCcCcCccccccCccccccccc
Confidence 666888998888 88888999988888888666555555544
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=2.8e-46 Score=313.03 Aligned_cols=136 Identities=55% Similarity=1.018 Sum_probs=104.7
Q ss_pred ccEEEEEEeCCCCcc------ccccccc---eeEeeeEEEeCeEEEeccccCCCCCeEeecCCC-CCCCCeEEEEEecce
Q 025832 41 APVYLNVYDLTPANG------YVYWAGL---GIFHTGVEVYGIEYAFGAHDFASSGVFEVEPRQ-CPGFRFRKSILMGTT 110 (247)
Q Consensus 41 ~~V~LnVYDLs~~n~------~~~~~Gl---GIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~-~pg~~fresI~LG~T 110 (247)
++|+||||||++.|. ...++|. |||||||||+|+||+||+|+.+.+||+.+.|++ .++++|+++|.||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 489999999996654 4467897 999999999999999999999889999999998 788899999999999
Q ss_pred ecCHHHHHHHHHHhhcCCCCCcccccccCcchHHHHHHHHhcCCCCChHHHHHHhhhh---hccccCCc
Q 025832 111 CLDPIEVREFMERQSANYNGDTYHLIVKNCNHFCEDICYKLTGKPIPKWVNRLARIGL---LCNCILPE 176 (247)
Q Consensus 111 ~lt~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS~el~~~L~Gk~IP~wInrLA~iG~---~~~c~lP~ 176 (247)
.+++++|+++|++|+++|++++||||.||||||||+||++|+|++||+||+|+|+++. +.+|++|.
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~ 149 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPM 149 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcC
Confidence 9999999999999999999999999999999999999999999999999999999886 66777774
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.39 E-value=0.021 Score=45.86 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=19.1
Q ss_pred cceecCHHHHHHHHHH-hhcCCCCCcccccccCcchHHHHHH
Q 025832 108 GTTCLDPIEVREFMER-QSANYNGDTYHLIVKNCNHFCEDIC 148 (247)
Q Consensus 108 G~T~lt~~e~~~~l~~-L~~~f~g~tYhLL~rNCNHFS~el~ 148 (247)
.....+++++.+-.++ |..+ ..|||+.+||=||+....
T Consensus 82 ~~~~~~~~~iv~rA~~~lg~~---~~Y~l~~nNCEhFa~~c~ 120 (125)
T PF04970_consen 82 RYKPFPPEEIVERAESRLGKE---FEYNLLFNNCEHFATWCR 120 (125)
T ss_dssp TS--S-HHHHHHHHHHTTT-E---ESS---HHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHcCC---CccCCCcCCHHHHHHHHH
Confidence 3444555555443333 2323 389999999999987653
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=93.74 E-value=0.16 Score=42.88 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHhhcCCCCCcccccccCcchHHHHHHHHhc
Q 025832 113 DPIEVREFMERQSANYNGDTYHLIVKNCNHFCEDICYKLT 152 (247)
Q Consensus 113 t~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS~el~~~L~ 152 (247)
+.+...+-|++-.++|....|+|+..||.+|...+.+.|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4566677788888999999999999999999988888774
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=72.05 E-value=5.2 Score=34.71 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=31.4
Q ss_pred ecCHHHHHHHHHHhhcCCCCC-----------------------cccccccCcchHHHHHHHHhc
Q 025832 111 CLDPIEVREFMERQSANYNGD-----------------------TYHLIVKNCNHFCEDICYKLT 152 (247)
Q Consensus 111 ~lt~~e~~~~l~~L~~~f~g~-----------------------tYhLL~rNCNHFS~el~~~L~ 152 (247)
.+++++++++++.++..|.-+ +|||+ ++||+-+++..+...
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG 160 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG 160 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence 678999999888776555543 56665 699999999888763
No 6
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=62.38 E-value=21 Score=34.50 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=53.8
Q ss_pred eeEeeeEEEeCeEEEeccccCC---CCCeEeecCCCCCCCCeEEEEEecceecCHHHHHHHHHHhhcCCCCCcccccccC
Q 025832 63 GIFHTGVEVYGIEYAFGAHDFA---SSGVFEVEPRQCPGFRFRKSILMGTTCLDPIEVREFMERQSANYNGDTYHLIVKN 139 (247)
Q Consensus 63 GIyHTGVeV~G~EY~FG~h~~~---~sGI~~~~P~~~pg~~fresI~LG~T~lt~~e~~~~l~~L~~~f~g~tYhLL~rN 139 (247)
-+||-||-|.+ -+.+|-|.-+ +.|-+.++|-..+ +| .++.=+-.++.+++++.+ .+.| -|..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~---WR-vvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW---WR-VVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc---cc-cccCCCCCCCHHHHHHhc---CCCC---Cchhhccc
Confidence 58999998743 5667766432 2344455554332 22 122222345566544422 3445 48999999
Q ss_pred cchHHHHHHHHhcCCCCCh-HHHHH--HhhhhhccccCC
Q 025832 140 CNHFCEDICYKLTGKPIPK-WVNRL--ARIGLLCNCILP 175 (247)
Q Consensus 140 CNHFS~el~~~L~Gk~IP~-wInrL--A~iG~~~~c~lP 175 (247)
|=||| |+-|. +++ |.+|- .+-|.|..+..+
T Consensus 90 Cy~fc---c~vl~---L~D~wl~rr~v~r~~~F~~P~Qd 122 (358)
T PF08405_consen 90 CYTFC---CWVLG---LNDSWLKRRLVSRTGPFYHPYQD 122 (358)
T ss_pred hHHHh---HhhcC---CChHHHhhccccccCCCCCCCCc
Confidence 99999 66553 343 66663 234556555443
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=55.99 E-value=16 Score=31.05 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=40.3
Q ss_pred EEEecceecCHHHHHHHHHHhhcC----CCCCcccccccCcchHHHHHHHHhcCCCCC
Q 025832 104 SILMGTTCLDPIEVREFMERQSAN----YNGDTYHLIVKNCNHFCEDICYKLTGKPIP 157 (247)
Q Consensus 104 sI~LG~T~lt~~e~~~~l~~L~~~----f~g~tYhLL~rNCNHFS~el~~~L~Gk~IP 157 (247)
.|..=...++++|.+.+++.+-+. -.+-.||.+..||=.-.-++.....++.+|
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 344455688999999988876433 255699999999988888888777776444
No 8
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=50.36 E-value=15 Score=28.01 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=22.3
Q ss_pred hcCCCCChHHHHHHhhhhhccccCCccc
Q 025832 151 LTGKPIPKWVNRLARIGLLCNCILPETL 178 (247)
Q Consensus 151 L~Gk~IP~wInrLA~iG~~~~c~lP~~l 178 (247)
+.|+.||.+++-++.||.++-.+.+...
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~~~~~~~~~ 34 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVFGGVYLATS 34 (71)
T ss_pred ecccccccchhHHHHHHHHHHHheeccC
Confidence 4588999999999999988776655433
No 9
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.14 E-value=32 Score=30.41 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=38.8
Q ss_pred EEEEecceec---CHHHHHHHHHHhhcCCCCCcccccccCcchHHHHHHHHhcC
Q 025832 103 KSILMGTTCL---DPIEVREFMERQSANYNGDTYHLIVKNCNHFCEDICYKLTG 153 (247)
Q Consensus 103 esI~LG~T~l---t~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS~el~~~L~G 153 (247)
+-+.|+.+.. .+....+.+.+-+++|...+|||+.-||..|-.-...+|.=
T Consensus 78 RY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry 131 (182)
T KOG3150|consen 78 RYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRY 131 (182)
T ss_pred eeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhc
Confidence 3455554433 45667788999999999999999999999998766666643
No 10
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=37.85 E-value=70 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=37.1
Q ss_pred CeEeecCCC-CCCCCeEEEEEecceecCHHHHHHHHHHhh-cCCCCCcccccccC
Q 025832 87 GVFEVEPRQ-CPGFRFRKSILMGTTCLDPIEVREFMERQS-ANYNGDTYHLIVKN 139 (247)
Q Consensus 87 GI~~~~P~~-~pg~~fresI~LG~T~lt~~e~~~~l~~L~-~~f~g~tYhLL~rN 139 (247)
|+..+-|+. +|+..|+ +|.+-.++.+++.|.+.|++.. +.-.++.|.|..-+
T Consensus 2 G~LKIYg~~L~~~~~YK-SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 2 GTLKIYGGSLVPTRPYK-TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred CeEEEcCCcccCCCCeE-EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 444454543 2556665 8999999999999999999765 55567788776653
No 11
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=33.69 E-value=38 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCCCChHHHHHHhhh
Q 025832 143 FCEDICYKLT--GKPIPKWVNRLARIG 167 (247)
Q Consensus 143 FS~el~~~L~--Gk~IP~wInrLA~iG 167 (247)
.|+++-++|. ...+|.||.++.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 3677777774 467999999999998
No 12
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=28.97 E-value=52 Score=23.90 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=20.0
Q ss_pred HHHHHHHhc--CCCCChHHHHHHhhh
Q 025832 144 CEDICYKLT--GKPIPKWVNRLARIG 167 (247)
Q Consensus 144 S~el~~~L~--Gk~IP~wInrLA~iG 167 (247)
|+++-++|. ...+|.|+.++.++|
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 678888884 357999999999998
No 13
>PF13964 Kelch_6: Kelch motif
Probab=27.91 E-value=53 Score=21.65 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=16.5
Q ss_pred eEeeeEEEeCeEEEeccccC
Q 025832 64 IFHTGVEVYGIEYAFGAHDF 83 (247)
Q Consensus 64 IyHTGVeV~G~EY~FG~h~~ 83 (247)
..|+.|.+.|+=|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998543
No 14
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=27.27 E-value=61 Score=31.89 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=38.0
Q ss_pred ceecCHHHHHHHHHHhhcCCCCCcccccccCcchHH----HHHHHHhcCCC
Q 025832 109 TTCLDPIEVREFMERQSANYNGDTYHLIVKNCNHFC----EDICYKLTGKP 155 (247)
Q Consensus 109 ~T~lt~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS----~el~~~L~Gk~ 155 (247)
+..++.+++++..+++. .-..+.-|++.=-|+||| .++++.|-|++
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35668899999999886 667788999999999999 46777787875
No 15
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=25.93 E-value=23 Score=31.81 Aligned_cols=20 Identities=45% Similarity=1.109 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHhhhhhccc
Q 025832 153 GKPIPKWVNRLARIGLLCNC 172 (247)
Q Consensus 153 Gk~IP~wInrLA~iG~~~~c 172 (247)
||+||-|+-.|.-|+.-+.|
T Consensus 85 GkPIPyWLYKLhGL~~ey~C 104 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKC 104 (196)
T ss_dssp --------------------
T ss_pred CCcccHHHHHHhCCCCeeee
Confidence 89999999999999988877
No 16
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=25.82 E-value=29 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCC-CcccccccCcchHHHHHHHHhcCCCCChHH
Q 025832 115 IEVREFMERQSANYNG-DTYHLIVKNCNHFCEDICYKLTGKPIPKWV 160 (247)
Q Consensus 115 ~e~~~~l~~L~~~f~g-~tYhLL~rNCNHFS~el~~~L~Gk~IP~wI 160 (247)
.++...++++...+.. ..+.++.=||+....++|+.+....+|..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 3455667777777663 467888899999767888888888888744
No 17
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=25.17 E-value=96 Score=27.79 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=27.6
Q ss_pred eecCHHHHHHHHHHhhcC----------------CCC--------CcccccccCcchHHHHHHHHh
Q 025832 110 TCLDPIEVREFMERQSAN----------------YNG--------DTYHLIVKNCNHFCEDICYKL 151 (247)
Q Consensus 110 T~lt~~e~~~~l~~L~~~----------------f~g--------~tYhLL~rNCNHFS~el~~~L 151 (247)
..+++++++++++.+++. |.. ..|||+ ++||+-+++..+.-
T Consensus 126 l~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~aA 190 (208)
T TIGR02117 126 LLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRSA 190 (208)
T ss_pred EEcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHHc
Confidence 467899998877765422 211 136655 69999999887754
No 18
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=24.46 E-value=42 Score=27.23 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHhhcCCCCCcccccccCcchHHHHHHHHhcCCCCChHHHHHH
Q 025832 113 DPIEVREFMERQSANYNGDTYHLIVKNCNHFCEDICYKLTGKPIPKWVNRLA 164 (247)
Q Consensus 113 t~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS~el~~~L~Gk~IP~wInrLA 164 (247)
++++++..|..++.+|. - --|--|++++.++|.-++||.-+.+|-
T Consensus 1 ~~~~~~Q~I~~I~~~f~--~-----~qC~~cA~Al~~~L~~~gI~Gk~i~l~ 45 (100)
T PF15643_consen 1 NPAEVRQQIGKIASRFK--I-----FQCVECASALKQFLKQAGIPGKIIRLY 45 (100)
T ss_pred CHHHHHHHHHHhhcccC--c-----eehHHHHHHHHHHHHHCCCCceEEEEE
Confidence 35778888999988874 2 279999999999999999999877763
No 19
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=24.35 E-value=75 Score=20.99 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=15.4
Q ss_pred EeeeEEEeCeEEEeccc
Q 025832 65 FHTGVEVYGIEYAFGAH 81 (247)
Q Consensus 65 yHTGVeV~G~EY~FG~h 81 (247)
-|+.+++.++=|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48899999999999986
No 20
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.70 E-value=92 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCeEEEEEecceecCHHHHHHHHHH
Q 025832 99 FRFRKSILMGTTCLDPIEVREFMER 123 (247)
Q Consensus 99 ~~fresI~LG~T~lt~~e~~~~l~~ 123 (247)
..|+=.+.||...+|++||+++++.
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~ 95 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQ 95 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHc
Confidence 4678889999999999999999985
No 21
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.13 E-value=1.5e+02 Score=22.39 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred ccccccCcccccccCCCCCccEEEEEEeCCC-Cc---cc-cccccceeEeeeEE--EeCeEEEecc
Q 025832 22 ATRFCMFPKVKSAEFGRGNAPVYLNVYDLTP-AN---GY-VYWAGLGIFHTGVE--VYGIEYAFGA 80 (247)
Q Consensus 22 ~~~~~~f~~~~~~~~~~~~~~V~LnVYDLs~-~n---~~-~~~~GlGIyHTGVe--V~G~EY~FG~ 80 (247)
.++|+++.. ....|.|.+||-.. .. .. +..-.-|+||.-|. ..|..|.|--
T Consensus 9 ~~~F~vwAP--------~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i 66 (100)
T cd02860 9 KTTFRLWAP--------TAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEV 66 (100)
T ss_pred CEEEEEECC--------CCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEE
Confidence 455666544 34579999998321 01 11 11124599998776 3577787743
No 22
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=27 Score=32.63 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=31.8
Q ss_pred EeCeEEEeccccCCCCCeEeecCCCCCCCCeEEEEEecceecCHHHHHHHHHHhhcCCCCCcccccccCcc
Q 025832 71 VYGIEYAFGAHDFASSGVFEVEPRQCPGFRFRKSILMGTTCLDPIEVREFMERQSANYNGDTYHLIVKNCN 141 (247)
Q Consensus 71 V~G~EY~FG~h~~~~sGI~~~~P~~~pg~~fresI~LG~T~lt~~e~~~~l~~L~~~f~g~tYhLL~rNCN 141 (247)
.-|-+|+|.+ -|+....-..-| +.|.-+.++ .+-+.--+.|.+.-+-.-|.||.+|||
T Consensus 14 L~~fgYaFde-----kGvLr~iktgeP-F~fn~~eD~-------~enqk~ye~Lge~i~~~VYeLLEk~c~ 71 (297)
T KOG3967|consen 14 LEGFGYAFDE-----KGVLRHIKTGEP-FVFNYREDL-------HENQKRYEALGEIITKYVYELLEKDCN 71 (297)
T ss_pred HhhcceeecC-----cceeeeccCCCC-eEEecHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567899986 577766432222 333221122 121223344555555567999999997
No 23
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.50 E-value=92 Score=19.86 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=16.1
Q ss_pred EeeeEEEeCeEEEeccccC
Q 025832 65 FHTGVEVYGIEYAFGAHDF 83 (247)
Q Consensus 65 yHTGVeV~G~EY~FG~h~~ 83 (247)
.|+.++++++=|.+||...
T Consensus 4 ~~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp SEEEEEETTEEEEEEEBES
T ss_pred cCEEEEECCEEEEEeeecc
Confidence 5888999999999998654
Done!