Query 025832
Match_columns 247
No_of_seqs 171 out of 471
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 2.8E-51 9.7E-56 349.6 10.6 143 39-187 5-160 (168)
2 2lkt_A Retinoic acid receptor 92.1 0.042 1.5E-06 43.1 1.1 34 111-147 86-120 (125)
3 4dot_A Group XVI phospholipase 91.9 0.088 3E-06 43.3 2.8 29 131-162 104-132 (140)
4 4dpz_X HRAS-like suppressor 2; 91.9 0.048 1.6E-06 44.7 1.2 37 110-149 85-122 (137)
5 1fme_A FSD-EY peptide; beta-BE 23.3 60 0.002 19.5 2.4 20 106-125 7-26 (28)
6 1rpq_W Peptide E131; receptor- 21.4 13 0.00044 22.1 -0.8 14 139-152 2-15 (26)
7 2wj8_A Nucleoprotein; RNA bind 20.6 57 0.0019 30.4 2.9 43 105-149 270-326 (391)
8 1wxa_A Afadin, AF-6 protein; R 12.4 3.6E+02 0.012 20.6 5.2 51 86-137 9-61 (116)
9 1f9y_A HPPK, protein (6-hydrox 12.1 2.9E+02 0.0099 22.5 4.8 39 86-124 37-76 (158)
10 4h62_V Mediator of RNA polymer 11.0 71 0.0024 19.6 0.6 17 108-124 5-21 (31)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=2.8e-51 Score=349.56 Aligned_cols=143 Identities=26% Similarity=0.412 Sum_probs=129.5
Q ss_pred CCccEEEEEEeCCCCcccc---ccccc---eeEeeeEEEeCeEEEeccccCCCCCeEeecCCCCCCCCeEEEEEecceec
Q 025832 39 GNAPVYLNVYDLTPANGYV---YWAGL---GIFHTGVEVYGIEYAFGAHDFASSGVFEVEPRQCPGFRFRKSILMGTTCL 112 (247)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~~---~~~Gl---GIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~fresI~LG~T~l 112 (247)
++++|+||||||+++++.. .++|. |||||||||||+||+||+ +||+.+.|+.++.++||++|+||+|++
T Consensus 5 ~~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~ 79 (168)
T 2wp7_A 5 NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEV 79 (168)
T ss_dssp CCEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECC
T ss_pred CCcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccC
Confidence 3589999999999986532 46887 999999999999999996 699999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcC-CCCCcccccccCcchHHHHHHHHhcCCCCChHHHHHHh------hhhhccccCCccccccCCCC
Q 025832 113 DPIEVREFMERQSAN-YNGDTYHLIVKNCNHFCEDICYKLTGKPIPKWVNRLAR------IGLLCNCILPETLKTSTVPH 185 (247)
Q Consensus 113 t~~e~~~~l~~L~~~-f~g~tYhLL~rNCNHFS~el~~~L~Gk~IP~wInrLA~------iG~~~~c~lP~~l~~~~~~~ 185 (247)
++++|++||++|+++ |++++||||.|||||||||+|++|+||+||+||||||+ +|++++|+|+ .+..++.+.
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~-~~~~~~~~~ 158 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLD-SIQIQPPGG 158 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHT-TCCCCCTTC
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHH-HHhhCCCCC
Confidence 999999999999998 99999999999999999999999999999999999998 8999999995 455555444
Q ss_pred CC
Q 025832 186 DP 187 (247)
Q Consensus 186 ~p 187 (247)
.|
T Consensus 159 ~~ 160 (168)
T 2wp7_A 159 NS 160 (168)
T ss_dssp EE
T ss_pred Cc
Confidence 44
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=92.12 E-value=0.042 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=21.6
Q ss_pred ecCHHHHHH-HHHHhhcCCCCCcccccccCcchHHHHH
Q 025832 111 CLDPIEVRE-FMERQSANYNGDTYHLIVKNCNHFCEDI 147 (247)
Q Consensus 111 ~lt~~e~~~-~l~~L~~~f~g~tYhLL~rNCNHFS~el 147 (247)
.++.+++.+ ....|.+++ .||||.+||=||+..+
T Consensus 86 p~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 86 PRPVEVIISSAKEMVGQKM---KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CCCHHHHHHHHHHHTTCEE---CSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCC---CcCCCccCHHHHHhhh
Confidence 345555433 333344333 6999999999998654
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=91.88 E-value=0.088 Score=43.28 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=18.7
Q ss_pred CcccccccCcchHHHHHHHHhcCCCCChHHHH
Q 025832 131 DTYHLIVKNCNHFCEDICYKLTGKPIPKWVNR 162 (247)
Q Consensus 131 ~tYhLL~rNCNHFS~el~~~L~Gk~IP~wInr 162 (247)
..|+||.+||-||+..+.. |+..-.-|.+
T Consensus 104 ~~Y~ll~nNCEHFvt~cr~---G~~~S~Qv~~ 132 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELRY---GVARSDQVRD 132 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHH---CCC-------
T ss_pred ccccccccChHHHHHHHhc---CCcccchhhh
Confidence 6999999999999988755 6554443433
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=91.86 E-value=0.048 Score=44.65 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=19.2
Q ss_pred eecCHHHHHHHHH-HhhcCCCCCcccccccCcchHHHHHHH
Q 025832 110 TCLDPIEVREFME-RQSANYNGDTYHLIVKNCNHFCEDICY 149 (247)
Q Consensus 110 T~lt~~e~~~~l~-~L~~~f~g~tYhLL~rNCNHFS~el~~ 149 (247)
..++.+++.+-.+ .+.. -..|+|+.+||.||+..+..
T Consensus 85 ~p~~~~~iv~rA~~~lG~---~~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 85 TPLPSNKIVKRAEELVGQ---ELPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp CCCCHHHHHHHHHHHTTC---EEC-----CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CcccCcCccChHHHHHHHhc
Confidence 4556666533222 2221 24899999999999988754
No 5
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.28 E-value=60 Score=19.48 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.6
Q ss_pred EecceecCHHHHHHHHHHhh
Q 025832 106 LMGTTCLDPIEVREFMERQS 125 (247)
Q Consensus 106 ~LG~T~lt~~e~~~~l~~L~ 125 (247)
+-|.|...+.|+++||+...
T Consensus 7 ykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp SSSCEECCHHHHHHHHHHCC
T ss_pred hcccccccHHHHHHHHHHhc
Confidence 45888889999999999764
No 6
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=21.45 E-value=13 Score=22.08 Aligned_cols=14 Identities=43% Similarity=1.139 Sum_probs=10.3
Q ss_pred CcchHHHHHHHHhc
Q 025832 139 NCNHFCEDICYKLT 152 (247)
Q Consensus 139 NCNHFS~el~~~L~ 152 (247)
.|.|||-++-..|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988765553
No 7
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=20.65 E-value=57 Score=30.41 Aligned_cols=43 Identities=21% Similarity=0.491 Sum_probs=27.5
Q ss_pred EEecceecCH-----HHHHHHHHHhhcCCCCCcccccc---------cCcchHHHHHHH
Q 025832 105 ILMGTTCLDP-----IEVREFMERQSANYNGDTYHLIV---------KNCNHFCEDICY 149 (247)
Q Consensus 105 I~LG~T~lt~-----~e~~~~l~~L~~~f~g~tYhLL~---------rNCNHFS~el~~ 149 (247)
|-||...+.. .||.++++++..+ ..-|||.. -||+||+.-+.-
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 4456554432 2566778888654 44577665 499999976653
No 8
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=12.36 E-value=3.6e+02 Score=20.63 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=36.4
Q ss_pred CCeEeecCCC-CCCCCeEEEEEecceecCHHHHHHHHHHhh-cCCCCCcccccc
Q 025832 86 SGVFEVEPRQ-CPGFRFRKSILMGTTCLDPIEVREFMERQS-ANYNGDTYHLIV 137 (247)
Q Consensus 86 sGI~~~~P~~-~pg~~fresI~LG~T~lt~~e~~~~l~~L~-~~f~g~tYhLL~ 137 (247)
.|+..+-|.. +++..|+ +|.+...+...+.|.+.|++.. +.-..+.|-|..
T Consensus 9 ~g~lkIYg~~L~~~~~Yk-svlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lve 61 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYK-TILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61 (116)
T ss_dssp CCEEEECCTTTCSSSCCE-EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred CeEEEEeCCcccCCCceE-EEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEE
Confidence 4767777765 3666665 7888888888889999999875 344556665544
No 9
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=12.06 E-value=2.9e+02 Score=22.51 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCeEeecCCCC-CCCCeEEEEEecceecCHHHHHHHHHHh
Q 025832 86 SGVFEVEPRQC-PGFRFRKSILMGTTCLDPIEVREFMERQ 124 (247)
Q Consensus 86 sGI~~~~P~~~-pg~~fresI~LG~T~lt~~e~~~~l~~L 124 (247)
|.+++++|=.. .+-.|--.+....|.+++.++.+.+.++
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~I 76 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRI 76 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHH
Confidence 56777777432 3446777788889999999999888765
No 10
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=11.03 E-value=71 Score=19.56 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=10.1
Q ss_pred cceecCHHHHHHHHHHh
Q 025832 108 GTTCLDPIEVREFMERQ 124 (247)
Q Consensus 108 G~T~lt~~e~~~~l~~L 124 (247)
|.|..++.+++++++.-
T Consensus 5 gvtrfdekqieelldnc 21 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNC 21 (31)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 67888999999988853
Done!