Query 025833
Match_columns 247
No_of_seqs 120 out of 249
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 67.7 8.2 0.00028 26.9 4.5 43 11-56 5-48 (54)
2 2knc_A Integrin alpha-IIB; tra 65.3 13 0.00044 25.8 5.1 37 11-48 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 60.6 11 0.00038 24.8 3.9 36 11-47 6-41 (42)
4 2jwa_A Receptor tyrosine-prote 34.9 32 0.0011 22.9 3.0 30 15-49 12-41 (44)
5 2uwj_E Type III export protein 33.8 21 0.00073 26.1 2.1 33 32-64 8-40 (70)
6 1rh4_A Right-handed coiled coi 32.4 30 0.001 21.6 2.3 16 47-62 18-33 (35)
7 2knc_B Integrin beta-3; transm 29.9 87 0.003 22.9 4.9 22 189-210 41-62 (79)
8 1uii_A Geminin; human, DNA rep 25.1 53 0.0018 24.7 3.0 14 43-56 33-46 (83)
9 1zke_A Hypothetical protein HP 24.1 12 0.0004 28.1 -0.8 18 49-66 65-82 (83)
10 1wlq_A Geminin; coiled-coil; 2 23.1 61 0.0021 24.4 3.0 14 43-56 25-38 (83)
11 3sok_A Fimbrial protein; pilus 22.7 1.6E+02 0.0054 23.1 5.7 42 21-62 6-47 (151)
12 3rhw_A Avermectin-sensitive gl 20.0 3.2E+02 0.011 24.0 7.7 52 20-75 281-335 (347)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=67.69 E-value=8.2 Score=26.94 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred ccCCCchhHH-HHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHH
Q 025833 11 EETPTWAVAV-VCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALE 56 (247)
Q Consensus 11 e~TPTWaVA~-Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALe 56 (247)
+..|.|.+.+ |+.-+++++ ++=-++-++| +|||+++ +..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~-Lii~~LwK~G-FFKR~~~-~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLM-LLILALWKIG-FFKRPLK-KKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHH-HHHHHHHHHH-HTTSCCS-CCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHH-HHHHHHHHcC-cccCCCc-chhhHHh
Confidence 4689996432 222222222 3334666776 7776664 3344443
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.31 E-value=13 Score=25.85 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=20.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 025833 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK 48 (247)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 48 (247)
...|.|.+.+-...-+++-.++=-+|.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 468999644333322333333445677777 7777764
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=60.64 E-value=11 Score=24.84 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=18.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 025833 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKH 47 (247)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (247)
+..|.|.+.+-...-+++-.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 468999643322222222223345666776 666654
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.93 E-value=32 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcch
Q 025833 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKR 49 (247)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 49 (247)
|++.|.|..+++++-+.+ -++=|++|++++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 456666655443322222 235577777654
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.80 E-value=21 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHH
Q 025833 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSELML 64 (247)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELML 64 (247)
+|..|+-.+.-..++=+-.|+.||-++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666555555555566799999999999985
No 6
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=32.44 E-value=30 Score=21.60 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHHHHH
Q 025833 47 HKRALYEALEKIKSEL 62 (247)
Q Consensus 47 ~kkaL~eALeKiK~EL 62 (247)
-|-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3467889999999885
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.91 E-value=87 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=16.2
Q ss_pred hhhhHHHhhhhhccccccCCCC
Q 025833 189 MKKWKKWEKETRTIDYQFSHDP 210 (247)
Q Consensus 189 ir~Wk~WE~e~~~~~~~~~~dp 210 (247)
-|.++++|+|-++...+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6899999999876655544445
No 8
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.06 E-value=53 Score=24.70 Aligned_cols=14 Identities=50% Similarity=0.909 Sum_probs=10.1
Q ss_pred hhhhcchHHHHHHH
Q 025833 43 LTKKHKRALYEALE 56 (247)
Q Consensus 43 Lkk~~kkaL~eALe 56 (247)
+-.+||+||.+||+
T Consensus 33 lAE~RR~AL~eaL~ 46 (83)
T 1uii_A 33 VAEKRRKALYEALK 46 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567788888876
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=24.15 E-value=12 Score=28.10 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025833 49 RALYEALEKIKSELMLLG 66 (247)
Q Consensus 49 kaL~eALeKiK~ELMLLG 66 (247)
|....||.|+|.|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 678899999999986654
No 10
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.08 E-value=61 Score=24.37 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=10.1
Q ss_pred hhhhcchHHHHHHH
Q 025833 43 LTKKHKRALYEALE 56 (247)
Q Consensus 43 Lkk~~kkaL~eALe 56 (247)
+-.++|+||++||+
T Consensus 25 lAE~Rr~AL~eaL~ 38 (83)
T 1wlq_A 25 VAEQRRKALYEALK 38 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567788888885
No 11
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=22.70 E-value=1.6e+02 Score=23.09 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 025833 21 VCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (247)
Q Consensus 21 Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (247)
+..|+++|+|+.==.+-.+..+.+|.+.+.....+..++..+
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777778888888777665555555555433
No 12
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=20.05 E-value=3.2e+02 Score=24.01 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025833 20 VVCFVLVTISIIIEHIIHLIGKWLTKKHK---RALYEALEKIKSELMLLGFISLLLTVA 75 (247)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k---kaL~eALeKiK~ELMLLGFISLLLtv~ 75 (247)
.+|.+||.+|++.=-.++++.+ +++ +.+-+-+.++-...+-+.|+.+=++-.
T Consensus 281 ~~~~~~v~~slle~~~v~~l~~----~~~~~~~~~~~~~~~~~~~~~p~~~~i~n~~~~ 335 (347)
T 3rhw_A 281 GACMTFIFCALLEFALVNHIAN----AGTTEWNDISKRVDLISRALFPVLFFVFNILYW 335 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999998877667777664 333 467777888877777666666655433
Done!