Query 025833
Match_columns 247
No_of_seqs 120 out of 249
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 18:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 20.1 87 0.0064 21.1 5.3 37 22-58 7-43 (158)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 19.8 91 0.0067 23.0 5.8 24 16-39 156-179 (319)
3 d1xrda1 f.3.1.1 (A:1-52) Light 19.7 25 0.0018 22.7 1.8 12 163-174 17-29 (52)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 18.2 36 0.0026 20.3 2.2 13 165-177 22-34 (37)
5 d1zkea1 a.30.6.1 (A:1-79) Hypo 17.4 20 0.0015 24.8 1.1 15 49-63 63-77 (79)
6 d1iwga8 f.35.1.1 (A:513-566,A: 17.3 84 0.0061 24.2 5.1 57 17-73 110-178 (222)
7 d2gola1 a.61.1.1 (A:7-107) HIV 15.6 21 0.0015 26.0 0.8 13 49-61 89-101 (101)
8 d1j1va_ a.4.12.2 (A:) Chromoso 13.3 76 0.0055 21.5 3.4 30 33-62 46-75 (94)
9 d1ep3a_ c.1.4.1 (A:) Dihydroor 12.2 77 0.0056 25.0 3.6 31 30-60 278-308 (311)
10 d2dy1a4 d.58.11.1 (A:378-454) 12.0 48 0.0035 21.9 1.8 17 45-61 15-31 (77)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=20.13 E-value=87 Score=21.12 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHH
Q 025833 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKI 58 (247)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKi 58 (247)
..|+++|+|+.==++=.+..+.++.+++.....+.-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666677777777776655544444433
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=19.79 E-value=91 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 025833 16 WAVAVVCFVLVTISIIIEHIIHLI 39 (247)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~l 39 (247)
|.++.++.+++.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 667777777777777665544443
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=19.71 E-value=25 Score=22.70 Aligned_cols=12 Identities=67% Similarity=1.143 Sum_probs=10.0
Q ss_pred HHHHHHHHHHH-H
Q 025833 163 LHIFIFVLALF-H 174 (247)
Q Consensus 163 LHiFIFVLAv~-H 174 (247)
++.|.|+||++ |
T Consensus 17 ~~~fL~~LAl~IH 29 (52)
T d1xrda1 17 LATFLFVLALLIH 29 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 58999999964 5
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.18 E-value=36 Score=20.29 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 025833 165 IFIFVLALFHVLY 177 (247)
Q Consensus 165 iFIFVLAv~HV~y 177 (247)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999876655
No 5
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=17.38 E-value=20 Score=24.78 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 025833 49 RALYEALEKIKSELM 63 (247)
Q Consensus 49 kaL~eALeKiK~ELM 63 (247)
|...+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678899999999974
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.27 E-value=84 Score=24.25 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhh--hhcchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 025833 17 AVAVVCFVLVTISIIIEHIIHLIGKWLT--KKHKRALYEALEKIKSEL----------MLLGFISLLLT 73 (247)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lk--k~~kkaL~eALeKiK~EL----------MLLGFISLLLt 73 (247)
-+.+....++++++.+...+|.+..+.+ +++.++..+|..+--+|- +.+||++|++.
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 3455667778899999999999998865 233345555554443333 36888888774
No 7
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=15.65 E-value=21 Score=25.98 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHH
Q 025833 49 RALYEALEKIKSE 61 (247)
Q Consensus 49 kaL~eALeKiK~E 61 (247)
+.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 3346999999987
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=13.29 E-value=76 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 025833 33 EHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (247)
Q Consensus 33 Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (247)
...+-.+|+.|..|.-.+...|+.|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 446778899996555588899999998754
No 9
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=12.24 E-value=77 Score=24.96 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHhhhhcchHHHHHHHHHHH
Q 025833 30 IIIEHIIHLIGKWLTKKHKRALYEALEKIKS 60 (247)
Q Consensus 30 l~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ 60 (247)
.++.+++..|.+|+++++=+.+-|...|+|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4688999999999999988899999999986
No 10
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=12.05 E-value=48 Score=21.87 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.4
Q ss_pred hhcchHHHHHHHHHHHH
Q 025833 45 KKHKRALYEALEKIKSE 61 (247)
Q Consensus 45 k~~kkaL~eALeKiK~E 61 (247)
+.....|.+||+|+.+|
T Consensus 15 ~~d~~kl~~aL~~L~~e 31 (77)
T d2dy1a4 15 RTDEARLGEALRKLLEE 31 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34556799999999887
Done!