Query 025834
Match_columns 247
No_of_seqs 271 out of 2142
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1054 Predicted sulfurtransf 100.0 5.2E-47 1.1E-51 333.6 6.0 173 3-224 112-286 (308)
2 PRK00142 putative rhodanese-re 100.0 1.2E-43 2.6E-48 321.5 12.5 181 3-223 111-293 (314)
3 PRK05320 rhodanese superfamily 100.0 2.8E-33 6.1E-38 247.3 11.9 148 3-181 109-256 (257)
4 PRK01415 hypothetical protein; 100.0 3.5E-32 7.7E-37 238.2 10.8 126 2-149 110-237 (247)
5 cd01518 RHOD_YceA Member of th 99.9 5.8E-22 1.3E-26 150.7 8.0 100 4-125 2-101 (101)
6 cd01533 4RHOD_Repeat_2 Member 99.8 5.1E-20 1.1E-24 141.9 8.6 99 4-127 10-109 (109)
7 PRK00162 glpE thiosulfate sulf 99.8 5.9E-20 1.3E-24 141.3 8.2 104 3-134 4-107 (108)
8 cd01527 RHOD_YgaP Member of th 99.8 2.4E-19 5.2E-24 135.5 10.3 97 4-129 2-98 (99)
9 cd01523 RHOD_Lact_B Member of 99.8 8.8E-20 1.9E-24 138.3 7.9 99 6-124 1-99 (100)
10 cd01519 RHOD_HSP67B2 Member of 99.8 1.5E-19 3.2E-24 137.9 8.4 104 7-124 2-105 (106)
11 cd01526 RHOD_ThiF Member of th 99.8 4.3E-19 9.3E-24 139.7 9.2 108 4-129 8-117 (122)
12 cd01447 Polysulfide_ST Polysul 99.8 6.5E-19 1.4E-23 133.4 9.0 102 6-127 1-103 (103)
13 cd01534 4RHOD_Repeat_3 Member 99.8 4.4E-19 9.5E-24 133.4 8.0 94 6-124 1-94 (95)
14 cd01525 RHOD_Kc Member of the 99.8 7.6E-19 1.6E-23 133.9 9.4 104 6-124 1-104 (105)
15 cd01521 RHOD_PspE2 Member of t 99.8 8.4E-19 1.8E-23 135.5 9.6 102 3-130 7-110 (110)
16 cd01528 RHOD_2 Member of the R 99.8 4.9E-19 1.1E-23 134.5 8.1 98 6-126 2-99 (101)
17 smart00450 RHOD Rhodanese Homo 99.8 6.6E-19 1.4E-23 130.6 8.6 98 31-129 3-100 (100)
18 cd01444 GlpE_ST GlpE sulfurtra 99.8 5.1E-19 1.1E-23 132.4 8.0 93 5-124 1-95 (96)
19 PLN02160 thiosulfate sulfurtra 99.8 1.1E-18 2.5E-23 140.4 9.9 111 4-131 15-127 (136)
20 cd01520 RHOD_YbbB Member of th 99.8 9.9E-19 2.2E-23 138.9 7.9 104 6-125 1-126 (128)
21 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 2.1E-18 4.5E-23 142.8 9.9 112 4-130 36-162 (162)
22 cd01524 RHOD_Pyr_redox Member 99.8 1E-18 2.2E-23 130.2 7.0 89 6-124 1-89 (90)
23 cd01530 Cdc25 Cdc25 phosphatas 99.8 3.2E-18 6.9E-23 135.0 8.9 105 4-124 2-120 (121)
24 cd01448 TST_Repeat_1 Thiosulfa 99.8 3.8E-18 8.3E-23 133.6 9.3 108 6-127 2-122 (122)
25 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.8E-18 4E-23 134.4 7.1 105 6-124 1-117 (118)
26 cd01529 4RHOD_Repeats Member o 99.7 2.6E-18 5.7E-23 129.3 7.1 85 31-124 11-95 (96)
27 PF00581 Rhodanese: Rhodanese- 99.7 4E-18 8.8E-23 130.1 7.1 106 7-126 1-113 (113)
28 cd01522 RHOD_1 Member of the R 99.7 7.2E-18 1.6E-22 132.0 8.0 104 6-126 1-105 (117)
29 KOG1530 Rhodanese-related sulf 99.7 1.4E-17 3E-22 131.0 8.1 98 31-130 37-134 (136)
30 cd01531 Acr2p Eukaryotic arsen 99.7 3.6E-17 7.8E-22 126.9 7.7 102 4-126 2-112 (113)
31 cd01532 4RHOD_Repeat_1 Member 99.7 4.2E-17 9.1E-22 122.2 7.1 81 30-124 8-91 (92)
32 cd01535 4RHOD_Repeat_4 Member 99.7 4.7E-17 1E-21 132.4 6.8 89 29-132 8-96 (145)
33 cd00158 RHOD Rhodanese Homolog 99.7 9.5E-17 2E-21 117.4 6.6 82 30-124 8-89 (89)
34 COG0607 PspE Rhodanese-related 99.7 2.7E-16 5.7E-21 120.1 9.3 89 30-131 18-107 (110)
35 cd01445 TST_Repeats Thiosulfat 99.7 2.7E-16 5.8E-21 126.9 8.4 109 6-124 1-137 (138)
36 PRK11493 sseA 3-mercaptopyruva 99.7 3.9E-16 8.4E-21 139.6 9.2 113 4-130 5-133 (281)
37 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 2.7E-16 5.8E-21 122.0 7.0 104 4-124 2-112 (113)
38 PRK08762 molybdopterin biosynt 99.6 3.6E-16 7.9E-21 145.3 8.7 100 4-130 3-102 (376)
39 PRK07878 molybdopterin biosynt 99.6 7E-16 1.5E-20 144.2 9.8 101 4-129 287-387 (392)
40 PRK09629 bifunctional thiosulf 99.6 1.3E-15 2.9E-20 149.2 10.1 113 4-130 9-127 (610)
41 PLN02723 3-mercaptopyruvate su 99.6 2.2E-15 4.8E-20 137.3 9.9 114 4-131 22-150 (320)
42 PRK07411 hypothetical protein; 99.6 2.2E-15 4.7E-20 140.8 9.3 88 32-130 299-386 (390)
43 TIGR02981 phageshock_pspE phag 99.6 1.4E-15 3E-20 116.5 6.4 81 31-125 17-97 (101)
44 PRK11493 sseA 3-mercaptopyruva 99.6 3E-15 6.5E-20 133.9 7.8 100 31-131 167-278 (281)
45 PLN02723 3-mercaptopyruvate su 99.6 3.9E-15 8.5E-20 135.7 8.0 99 31-130 204-315 (320)
46 PRK10287 thiosulfate:cyanide s 99.6 3.7E-15 8E-20 114.8 6.6 81 31-125 19-99 (104)
47 PRK05597 molybdopterin biosynt 99.5 4.4E-14 9.6E-19 130.5 9.5 82 31-125 273-354 (355)
48 PRK09629 bifunctional thiosulf 99.5 3E-14 6.5E-19 139.8 8.5 110 31-141 161-280 (610)
49 cd01446 DSP_MapKP N-terminal r 99.5 6.7E-14 1.5E-18 111.3 8.4 109 6-127 2-128 (132)
50 PRK11784 tRNA 2-selenouridine 99.5 5.4E-14 1.2E-18 129.3 8.2 96 31-128 14-131 (345)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.5 8.2E-14 1.8E-18 126.4 6.3 96 32-129 2-118 (311)
52 PRK05600 thiamine biosynthesis 99.5 9.7E-14 2.1E-18 128.9 6.8 94 5-121 272-369 (370)
53 COG2897 SseA Rhodanese-related 99.4 2.3E-13 4.9E-18 121.8 8.4 98 30-128 169-277 (285)
54 COG2897 SseA Rhodanese-related 99.4 4.2E-13 9.1E-18 120.1 8.9 119 4-131 11-137 (285)
55 KOG3772 M-phase inducer phosph 99.2 8.1E-11 1.8E-15 106.0 8.1 110 4-128 156-278 (325)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.1 1.1E-10 2.4E-15 111.9 6.6 73 31-118 406-482 (482)
57 KOG2017 Molybdopterin synthase 99.0 1.4E-09 3E-14 98.7 6.9 104 5-129 318-422 (427)
58 KOG1529 Mercaptopyruvate sulfu 98.7 4.3E-08 9.3E-13 87.0 8.4 113 4-130 5-134 (286)
59 COG5105 MIH1 Mitotic inducer, 98.3 1.1E-06 2.5E-11 79.0 6.2 105 4-127 242-359 (427)
60 KOG1529 Mercaptopyruvate sulfu 98.3 1.2E-06 2.6E-11 77.8 6.0 94 30-125 170-275 (286)
61 COG2603 Predicted ATPase [Gene 95.5 0.012 2.7E-07 52.9 3.2 92 31-124 14-127 (334)
62 TIGR01244 conserved hypothetic 94.5 0.08 1.7E-06 42.3 5.1 21 86-106 87-107 (135)
63 KOG1093 Predicted protein kina 91.6 0.04 8.7E-07 53.8 -0.9 87 31-124 633-719 (725)
64 PF04273 DUF442: Putative phos 88.6 0.45 9.7E-06 36.8 3.0 20 86-105 87-106 (110)
65 KOG1717 Dual specificity phosp 88.0 0.4 8.6E-06 42.9 2.6 106 4-127 4-125 (343)
66 PF11494 Ta0938: Ta0938; Inte 81.9 0.47 1E-05 35.8 0.2 35 169-207 14-48 (105)
67 PF14446 Prok-RING_1: Prokaryo 78.7 1.1 2.3E-05 30.4 1.1 31 169-210 5-35 (54)
68 PRK00142 putative rhodanese-re 77.7 0.34 7.4E-06 44.3 -2.1 43 7-63 17-59 (314)
69 KOG3636 Uncharacterized conser 73.5 5.3 0.00012 38.4 4.5 32 31-62 325-356 (669)
70 COG2888 Predicted Zn-ribbon RN 69.9 4.3 9.4E-05 28.0 2.3 47 169-215 9-57 (61)
71 PF01451 LMWPc: Low molecular 69.1 3.5 7.5E-05 32.4 2.0 36 88-123 1-41 (138)
72 PRK14890 putative Zn-ribbon RN 69.0 5.8 0.00013 27.3 2.8 45 169-215 7-55 (59)
73 cd00127 DSPc Dual specificity 66.0 4.7 0.0001 31.2 2.2 25 86-110 82-109 (139)
74 PF12368 DUF3650: Protein of u 62.5 2.4 5.3E-05 24.7 -0.0 12 213-224 1-12 (28)
75 PF15645 Tox-PLDMTX: Dermonecr 62.2 5.5 0.00012 32.0 1.9 45 98-144 11-64 (135)
76 PF09992 DUF2233: Predicted pe 59.9 13 0.00029 30.1 4.0 41 81-122 97-142 (170)
77 TIGR03167 tRNA_sel_U_synt tRNA 58.4 14 0.00031 33.7 4.2 29 31-60 150-182 (311)
78 PRK13530 arsenate reductase; P 58.3 17 0.00038 28.7 4.2 35 86-120 4-39 (133)
79 PLN02727 NAD kinase 57.8 15 0.00032 38.5 4.5 22 86-107 342-365 (986)
80 TIGR02689 ars_reduc_gluta arse 57.8 16 0.00036 28.3 4.0 35 87-121 2-37 (126)
81 smart00291 ZnF_ZZ Zinc-binding 57.6 8.3 0.00018 24.5 1.8 32 170-205 5-36 (44)
82 PF12156 ATPase-cat_bd: Putati 56.5 7 0.00015 28.9 1.5 10 171-180 2-11 (88)
83 smart00226 LMWPc Low molecular 56.1 11 0.00023 29.7 2.7 36 88-123 1-37 (140)
84 PRK10126 tyrosine phosphatase; 51.9 15 0.00034 29.3 3.0 36 87-123 4-40 (147)
85 PF08394 Arc_trans_TRASH: Arch 49.5 8.9 0.00019 23.9 0.9 33 172-206 1-33 (37)
86 PRK04023 DNA polymerase II lar 49.2 14 0.0003 38.9 2.8 44 169-217 626-672 (1121)
87 cd02340 ZZ_NBR1_like Zinc fing 48.1 13 0.00028 23.7 1.6 31 171-205 2-32 (43)
88 PRK11391 etp phosphotyrosine-p 47.8 20 0.00043 28.7 3.0 36 87-123 4-40 (144)
89 COG0394 Wzb Protein-tyrosine-p 44.3 32 0.00069 27.6 3.7 36 87-122 4-40 (139)
90 cd00115 LMWPc Substituted upda 43.5 29 0.00062 27.3 3.3 37 87-123 2-40 (141)
91 PRK15372 pathogenicity island 42.7 15 0.00032 32.6 1.6 42 99-142 153-203 (292)
92 PRK07688 thiamine/molybdopteri 41.1 23 0.00049 32.7 2.6 38 5-50 278-315 (339)
93 cd02336 ZZ_RSC8 Zinc finger, Z 40.9 20 0.00043 23.2 1.6 32 171-206 2-33 (45)
94 TIGR02691 arsC_pI258_fam arsen 39.2 35 0.00077 26.7 3.2 34 88-121 1-35 (129)
95 PF04473 DUF553: Transglutamin 39.0 17 0.00038 29.7 1.4 47 97-145 81-130 (153)
96 smart00195 DSPc Dual specifici 38.3 50 0.0011 25.4 3.9 25 86-110 79-106 (138)
97 PF01753 zf-MYND: MYND finger; 35.9 14 0.0003 22.4 0.3 18 198-217 11-28 (37)
98 cd02345 ZZ_dah Zinc finger, ZZ 35.8 23 0.00049 23.2 1.3 32 171-206 2-34 (49)
99 cd02249 ZZ Zinc finger, ZZ typ 35.7 25 0.00054 22.4 1.5 32 171-206 2-33 (46)
100 PF03833 PolC_DP2: DNA polymer 33.8 14 0.0003 38.3 0.0 44 169-217 655-701 (900)
101 COG3453 Uncharacterized protei 33.4 46 0.00099 26.4 2.8 19 86-104 88-106 (130)
102 PF06689 zf-C4_ClpX: ClpX C4-t 33.3 27 0.00059 21.9 1.3 31 171-205 3-33 (41)
103 PF01488 Shikimate_DH: Shikima 33.1 67 0.0014 25.1 3.9 36 86-122 13-48 (135)
104 KOG0333 U5 snRNP-like RNA heli 33.0 44 0.00096 33.1 3.3 35 86-121 518-552 (673)
105 PRK12336 translation initiatio 30.7 29 0.00063 29.6 1.5 32 169-206 98-129 (201)
106 PRK03988 translation initiatio 30.5 33 0.00071 27.6 1.7 31 169-205 102-132 (138)
107 KOG3134 Predicted membrane pro 30.4 22 0.00048 30.9 0.7 33 171-206 2-34 (225)
108 smart00653 eIF2B_5 domain pres 30.1 33 0.00071 26.5 1.6 30 169-204 80-109 (110)
109 PHA02776 E7 protein; Provision 29.7 27 0.00059 26.7 1.0 37 167-205 56-100 (101)
110 PF08274 PhnA_Zn_Ribbon: PhnA 29.6 25 0.00054 20.8 0.6 27 169-205 2-28 (30)
111 PF09889 DUF2116: Uncharacteri 29.4 29 0.00063 23.8 1.0 13 169-181 3-15 (59)
112 PF04606 Ogr_Delta: Ogr/Delta- 29.1 42 0.0009 21.6 1.7 14 184-197 25-38 (47)
113 TIGR00311 aIF-2beta translatio 28.5 35 0.00076 27.3 1.5 31 169-205 97-127 (133)
114 PHA02565 49 recombination endo 28.3 42 0.00091 27.7 2.0 35 169-204 20-63 (157)
115 PRK09678 DNA-binding transcrip 28.1 54 0.0012 23.4 2.3 18 183-200 26-43 (72)
116 cd00079 HELICc Helicase superf 27.1 90 0.002 23.0 3.6 33 87-120 30-62 (131)
117 cd02335 ZZ_ADA2 Zinc finger, Z 26.6 46 0.001 21.6 1.6 33 171-206 2-34 (49)
118 cd02338 ZZ_PCMF_like Zinc fing 26.6 39 0.00085 22.0 1.3 32 171-206 2-34 (49)
119 PF00628 PHD: PHD-finger; Int 26.5 46 0.001 21.2 1.6 17 194-210 12-28 (51)
120 PF03884 DUF329: Domain of unk 26.2 24 0.00051 24.1 0.1 20 205-224 19-38 (57)
121 PF03853 YjeF_N: YjeF-related 26.1 1.2E+02 0.0026 24.7 4.4 29 86-115 26-57 (169)
122 PF14803 Nudix_N_2: Nudix N-te 25.7 45 0.00099 20.2 1.3 29 171-204 2-30 (34)
123 cd02339 ZZ_Mind_bomb Zinc fing 25.7 48 0.001 21.3 1.5 30 171-204 2-32 (45)
124 PRK00418 DNA gyrase inhibitor; 25.6 26 0.00056 24.4 0.2 17 205-221 23-39 (62)
125 PF06200 tify: tify domain; I 25.4 41 0.00089 20.7 1.1 12 130-141 10-21 (36)
126 PF14952 zf-tcix: Putative tre 25.1 44 0.00095 21.6 1.2 27 169-196 11-37 (44)
127 cd02334 ZZ_dystrophin Zinc fin 25.0 53 0.0011 21.6 1.6 32 171-206 2-34 (49)
128 PF04122 CW_binding_2: Putativ 25.0 1.2E+02 0.0027 21.8 3.9 32 86-120 51-82 (92)
129 PF04161 Arv1: Arv1-like famil 24.7 42 0.00092 28.7 1.5 31 171-204 2-32 (208)
130 PF00569 ZZ: Zinc finger, ZZ t 24.5 42 0.0009 21.5 1.1 33 169-205 4-37 (46)
131 COG5254 ARV1 Predicted membran 23.6 33 0.00071 29.6 0.5 33 171-206 2-34 (239)
132 COG3024 Uncharacterized protei 23.6 52 0.0011 23.0 1.4 36 169-223 7-42 (65)
133 PF00782 DSPc: Dual specificit 23.3 1.3E+02 0.0028 22.8 3.9 25 86-110 74-101 (133)
134 PF01873 eIF-5_eIF-2B: Domain 22.9 51 0.0011 26.1 1.5 31 169-205 93-123 (125)
135 COG2453 CDC14 Predicted protei 22.7 76 0.0017 26.2 2.6 25 86-110 106-133 (180)
136 TIGR00853 pts-lac PTS system, 22.2 1.3E+02 0.0027 22.3 3.5 39 86-125 4-46 (95)
137 PF10497 zf-4CXXC_R1: Zinc-fin 21.6 95 0.0021 23.7 2.7 32 170-202 8-44 (105)
138 cd07168 NR_DBD_DHR4_like DNA-b 21.6 57 0.0012 24.1 1.5 29 168-206 5-33 (90)
139 KOG0353 ATP-dependent DNA heli 21.2 1.5E+02 0.0032 28.4 4.3 24 88-111 320-343 (695)
140 COG0068 HypF Hydrogenase matur 21.0 67 0.0014 32.8 2.2 26 195-220 150-185 (750)
141 PRK04837 ATP-dependent RNA hel 20.9 1.1E+02 0.0024 28.6 3.6 34 87-121 257-290 (423)
142 PLN03158 methionine aminopepti 20.7 39 0.00085 32.0 0.5 31 170-216 10-45 (396)
143 smart00132 LIM Zinc-binding do 20.6 61 0.0013 18.7 1.2 9 172-180 2-10 (39)
144 PF13240 zinc_ribbon_2: zinc-r 20.6 57 0.0012 17.9 0.9 10 172-181 2-11 (23)
145 PRK09590 celB cellobiose phosp 20.3 1.3E+02 0.0028 22.8 3.2 37 87-124 3-43 (104)
No 1
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=100.00 E-value=5.2e-47 Score=333.59 Aligned_cols=173 Identities=39% Similarity=0.806 Sum_probs=150.3
Q ss_pred CCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 3 AIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 3 a~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
+++|+|++|+++|.+ ++++|||+||.|||++|||.||++|++.+|++||.|.... .+. -
T Consensus 112 G~yl~p~~wn~~l~D-------------~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~-------~~~-~ 170 (308)
T COG1054 112 GTYLSPKDWNELLSD-------------PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEEN-------LDL-L 170 (308)
T ss_pred cCccCHHHHHHHhcC-------------CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHH-------HHh-c
Confidence 689999999999997 8899999999999999999999999999999998544321 111 2
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCC--ceeecceeEEeeeeecCCCCCCCchhhhhhh
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP--VEWVGNLFVFDSRLSLPPSAYKPDAVSEARM 160 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~--~~~~G~~fvFD~R~~~~~~~~~~~~~~~~~~ 160 (247)
++ |+|+||||||||||++++||+..||++||+|+|||..|.++.+. ..|+|+|||||+||+|+++..+++
T Consensus 171 ~~-KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~lw~G~cFVFDeRvav~~~l~~~~------- 242 (308)
T COG1054 171 KD-KKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGSLWDGKCFVFDERVAVPIGLVEGD------- 242 (308)
T ss_pred cC-CcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCceeccceeEecceecccCcccCCC-------
Confidence 33 36999999999999999999999999999999999999997655 359999999999999998864321
Q ss_pred cCCCCCCCccccccCCCcccccccccCCCCCCCceEEechhhhhccCCCCCccccccccCCCCC
Q 025834 161 IGKVPENPFATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLRGCCCLNCTTAPQRRPVL 224 (247)
Q Consensus 161 ~~~~~~~~~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~~~~c~~~c~~~~~~~~~~ 224 (247)
+ .|+ .||+|+.|+.++++|+.|..++.++|+++|.+++++|+..
T Consensus 243 --------~-------~~C-----~~C~~p~~~~~~~~~~~~~~~~~~~C~~ec~~~~~~r~~e 286 (308)
T COG1054 243 --------H-------TPC-----DNCRNPLCNLLFISCEYCEGKYCGCCSDECSEEPRLRYEE 286 (308)
T ss_pred --------c-------chh-----hhcCCCCCHHHhhcchhhhcccCCCccHHHhhhhhhHHHH
Confidence 2 222 2899999999999999999999999999999999999765
No 2
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=100.00 E-value=1.2e-43 Score=321.54 Aligned_cols=181 Identities=40% Similarity=0.817 Sum_probs=155.1
Q ss_pred CCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 3 AIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 3 a~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
..+++|++|++++.+ ++++|||||+++||+.||||||+++|+..|++++.+ +. ..+ ...
T Consensus 111 ~~~is~~el~~~l~~-------------~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~-----l~--~~~-~~~ 169 (314)
T PRK00142 111 GTYLKPKEVNELLDD-------------PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPW-----VE--ENL-DPL 169 (314)
T ss_pred CcccCHHHHHHHhcC-------------CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHH-----HH--Hhc-CCC
Confidence 467899999988875 679999999999999999999999999988765311 10 011 233
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc--eeecceeEEeeeeecCCCCCCCchhhhhhh
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV--EWVGNLFVFDSRLSLPPSAYKPDAVSEARM 160 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~--~~~G~~fvFD~R~~~~~~~~~~~~~~~~~~ 160 (247)
+++ +|||||++|+||++++.+|++.||++|++|+|||.+|.+..++. .|+|+|||||+|++++++
T Consensus 170 kdk-~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~~~~~w~G~~fVFD~R~~~~~~------------ 236 (314)
T PRK00142 170 KDK-KVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDPETQGLLWDGKLYVFDERMAVPIN------------ 236 (314)
T ss_pred CcC-eEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHhhccccceeecCCccccCcccCCCC------------
Confidence 444 79999999999999999999999999999999999999976554 599999999999999876
Q ss_pred cCCCCCCCccccccCCCcccccccccCCCCCCCceEEechhhhhccCCCCCccccccccCCCC
Q 025834 161 IGKVPENPFATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLRGCCCLNCTTAPQRRPV 223 (247)
Q Consensus 161 ~~~~~~~~~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~~~~c~~~c~~~~~~~~~ 223 (247)
...++++|+.||+|++ +|.||+|+.||.++++|+.|.+++.++||..|..++++++.
T Consensus 237 ----~~~~~~~c~~cg~~~~--~~~~C~~~~C~~~~~~c~~c~~~~~~~~s~~~~~~~~~~~~ 293 (314)
T PRK00142 237 ----DEVPIGHCHQCGTPCD--RYVNCANPACNLLILQCEECEEKYLGCCSEECCEHPRNRYV 293 (314)
T ss_pred ----ccccccccccCCCCcc--hhhCCCCCCCCCeEeechhhhHHhcCccCchhcccccCHHH
Confidence 1356899999999998 57999999999999999999999999999999999888743
No 3
>PRK05320 rhodanese superfamily protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=247.34 Aligned_cols=148 Identities=34% Similarity=0.638 Sum_probs=118.6
Q ss_pred CCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 3 AIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 3 a~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
..+|+|.+|.+++++... ..+++++|||||+++||+.||||||+|||...|++++.+.. . .+..+
T Consensus 109 ~~~is~~el~~~l~~~~~-------~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~--~-----~~~~~- 173 (257)
T PRK05320 109 APSVDAATLKRWLDQGHD-------DAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALA--A-----HRADL- 173 (257)
T ss_pred CceeCHHHHHHHHhcccc-------ccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHH--h-----hhhhc-
Confidence 356888888888765210 01246899999999999999999999999998876542211 1 11122
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCceeecceeEEeeeeecCCCCCCCchhhhhhhcC
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWVGNLFVFDSRLSLPPSAYKPDAVSEARMIG 162 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~~~~G~~fvFD~R~~~~~~~~~~~~~~~~~~~~ 162 (247)
++ ++|+|||++|+||++|+.+|++.||++|++|+|||.+|.++.++..|+|+|||||+|++|+++.
T Consensus 174 kd-k~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~~~~~G~~fVFD~R~~~~~~~------------- 239 (257)
T PRK05320 174 AG-KTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEEVGGAHYDGDCFVFDYRTALDPQL------------- 239 (257)
T ss_pred CC-CeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHhCCCCeeeeeeeeecCeeecCCCC-------------
Confidence 44 4799999999999999999999999999999999999999877778999999999999998653
Q ss_pred CCCCCCccccccCCCcccc
Q 025834 163 KVPENPFATCYICSSQVRE 181 (247)
Q Consensus 163 ~~~~~~~~~C~~C~~~~~~ 181 (247)
...+++.|+.|+.|.++
T Consensus 240 --~~~~~~~c~~c~~~~~~ 256 (257)
T PRK05320 240 --APLVDVTCFACRAVVTP 256 (257)
T ss_pred --ccCccceecCCCCcCCC
Confidence 23457889999999874
No 4
>PRK01415 hypothetical protein; Validated
Probab=99.97 E-value=3.5e-32 Score=238.17 Aligned_cols=126 Identities=34% Similarity=0.700 Sum_probs=108.1
Q ss_pred CCCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCC
Q 025834 2 RAIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADL 81 (247)
Q Consensus 2 ra~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (247)
++++|+|++|++++++ ++++|||||+++||+.||||||+|+|...|++++.+.. ....+
T Consensus 110 ~g~~i~p~e~~~ll~~-------------~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~--------~~~~~ 168 (247)
T PRK01415 110 KGEYIEPKDWDEFITK-------------QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQ--------QNQEL 168 (247)
T ss_pred CccccCHHHHHHHHhC-------------CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHh--------hhhhh
Confidence 3578999999999985 78999999999999999999999999998887653221 11234
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCC--ceeecceeEEeeeeecCCCC
Q 025834 82 DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP--VEWVGNLFVFDSRLSLPPSA 149 (247)
Q Consensus 82 ~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~--~~~~G~~fvFD~R~~~~~~~ 149 (247)
++++ +|+|||++|+||++++.+|+++||++||+|+|||.+|.++.++ ..|+|+|||||+|++|+.+.
T Consensus 169 ~k~k-~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~~~~~~~w~G~~fVFD~R~av~~~l 237 (247)
T PRK01415 169 LKGK-KIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDTQNKNNLWQGECFVFDDRRAVTDDL 237 (247)
T ss_pred cCCC-eEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhcccCCCeeeeeeeeeCceeecCCCC
Confidence 5554 7999999999999999999999999999999999999987654 57999999999999998654
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.86 E-value=5.8e-22 Score=150.69 Aligned_cols=100 Identities=56% Similarity=0.981 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
..++|+++.+++.. ++++|||||++.||+.||||||+|+|...+.+++. .+. .+..+++
T Consensus 2 ~~is~~~l~~~~~~-------------~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~-----~~~---~~~~~~~ 60 (101)
T cd01518 2 TYLSPAEWNELLED-------------PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPF-----WLD---ENLDLLK 60 (101)
T ss_pred CcCCHHHHHHHHcC-------------CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHH-----HHH---hhhhhcC
Confidence 56899999998864 67899999999999999999999999987653221 110 0111245
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHH
Q 025834 84 EKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 125 (247)
Q Consensus 84 ~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~ 125 (247)
++ +||+||.+|.|+..++.+|+++||++|+.|+||+.+|.+
T Consensus 61 ~~-~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 61 GK-KVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred CC-EEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 54 799999999999999999999999999999999999974
No 6
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.81 E-value=5.1e-20 Score=141.91 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
..++++++.++++. +.+.+|||||++.||..||||||+|+|...|... + ..+ ..++
T Consensus 10 ~~i~~~~l~~~~~~------------~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~--------~---~~l-~~~~ 65 (109)
T cd01533 10 PSVSADELAALQAR------------GAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR--------V---GEL-APDP 65 (109)
T ss_pred CcCCHHHHHHHHhc------------CCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH--------H---Hhc-CCCC
Confidence 56788888887764 2467899999999999999999999998766321 0 001 1123
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHcCCCc-EEEccchHHHHHHCc
Q 025834 84 EKTDILMYCTGGIRCDVYSTILRQRGFHN-LYTLKGGVSHYLENE 127 (247)
Q Consensus 84 ~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~n-V~~L~GGi~~w~~~g 127 (247)
+ ++||+||.+|.|+..++..|+..||++ |+.|+||+.+|..+|
T Consensus 66 ~-~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 66 R-TPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred C-CeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 3 479999999999999999999999998 999999999998764
No 7
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=5.9e-20 Score=141.34 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=87.4
Q ss_pred CCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 3 AIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 3 a~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
.+.++|+++.++++. .+.+|||+|++.||..||||||+|+|...|.++ +..++
T Consensus 4 ~~~is~~el~~~l~~-------------~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~--------------~~~~~ 56 (108)
T PRK00162 4 FECINVEQAHQKLQE-------------GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF--------------MRQAD 56 (108)
T ss_pred ccccCHHHHHHHHHc-------------CCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH--------------HHhcC
Confidence 467899999998875 467899999999999999999999998665321 11244
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCceeec
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWVG 134 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~~~~G 134 (247)
+++ +|++||.+|.++..++..|+..||++|++|+||+.+|.+.+.|+...|
T Consensus 57 ~~~-~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~~ 107 (108)
T PRK00162 57 FDT-PVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVASG 107 (108)
T ss_pred CCC-CEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCCC
Confidence 554 799999999999999999999999999999999999999998866544
No 8
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.80 E-value=2.4e-19 Score=135.52 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
+.++|+++.++++. + .+|||+|++.||..||||||+|+|...+... ...+++
T Consensus 2 ~~i~~~el~~~~~~-------------~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------~~~~~~ 53 (99)
T cd01527 2 TTISPNDACELLAQ-------------G-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------GLPLVG 53 (99)
T ss_pred CccCHHHHHHHHHC-------------C-CEEEECCCHHHHHhCcCCCCEECChhHhccc--------------ccCCCC
Confidence 46889999988874 3 7899999999999999999999998766421 012455
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCC
Q 025834 84 EKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 84 ~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~ 129 (247)
++ +||+||.+|.|+..++..|.+.||++|+.|+||+.+|...++|
T Consensus 54 ~~-~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~ 98 (99)
T cd01527 54 AN-AIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLP 98 (99)
T ss_pred CC-cEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCC
Confidence 54 7999999999999999999999999999999999999998776
No 9
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.80 E-value=8.8e-20 Score=138.26 Aligned_cols=99 Identities=20% Similarity=0.344 Sum_probs=77.6
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEK 85 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~ 85 (247)
|+|+++.+++++ +++++|||||++.||+.||||||+|+|...+..... .... ..+..+++++
T Consensus 1 is~~el~~~l~~------------~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~-~~~~-----~~~~~~~~~~ 62 (100)
T cd01523 1 LDPEDLYARLLA------------GQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFL-EIEE-----DILDQLPDDQ 62 (100)
T ss_pred CCHHHHHHHHHc------------CCCcEEEEeCCHHHHhhcccCCCcccccccchHHHH-HhhH-----HHHhhCCCCC
Confidence 578888888765 356899999999999999999999999876532100 0000 1122345554
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
+||+||.+|.|+..++..|++.||+ ++.|.||+.+|.
T Consensus 63 -~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 63 -EVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred -eEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 7999999999999999999999998 999999999995
No 10
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.80 E-value=1.5e-19 Score=137.88 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=77.2
Q ss_pred CHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCc
Q 025834 7 APSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKT 86 (247)
Q Consensus 7 sp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~ 86 (247)
+++++.++++. .++++|||+|++.||..||||||+|+|...+.+... ...+++........++++ +
T Consensus 2 ~~~~~~~~l~~------------~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 67 (106)
T cd01519 2 SFEEVKNLPNP------------HPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALA-LSEEEFEKKYGFPKPSKD-K 67 (106)
T ss_pred cHHHHHHhcCC------------CCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhC-CCHHHHHHHhcccCCCCC-C
Confidence 45666666651 267999999999999999999999999887643211 111122111111123444 4
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 87 DILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 87 ~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
+||+||.+|.|+.+++..|..+||+||+.|+||+.+|.
T Consensus 68 ~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 68 ELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 79999999999999999999999999999999999995
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.79 E-value=4.3e-19 Score=139.70 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhcc-CCccCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFAS-DPLADLD 82 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~-~~l~~l~ 82 (247)
..|+|+++.+++++ +++++|||+|++.||..||||||+|+|...+.+.. ..+... .....++
T Consensus 8 ~~is~~el~~~~~~------------~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~-----~~~~~~~~~~~~~~ 70 (122)
T cd01526 8 ERVSVKDYKNILQA------------GKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKA-----AELKSLQELPLDND 70 (122)
T ss_pred cccCHHHHHHHHhC------------CCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhh-----hhhhhhhhcccccC
Confidence 56888888888764 35789999999999999999999999988764311 010000 0011234
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCC-CcEEEccchHHHHHHCcCC
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGF-HNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf-~nV~~L~GGi~~w~~~g~~ 129 (247)
+++ +||+||.+|.|+..++..|++.|| ++|+.|+||+.+|..+..+
T Consensus 71 ~~~-~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 71 KDS-PIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 554 799999999999999999999999 7999999999999987655
No 12
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.78 E-value=6.5e-19 Score=133.36 Aligned_cols=102 Identities=23% Similarity=0.396 Sum_probs=78.0
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhh-hcccCCCcccCCccccccccCCcchhhhhccCCccCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEW-DIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKE 84 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~-~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~ 84 (247)
++++++.++++. ++.+|||+|++.|+ ..||||||+|+|...+...... ... .....++++
T Consensus 1 is~~el~~~~~~-------------~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~---~~~---~~~~~~~~~ 61 (103)
T cd01447 1 LSPEDARALLGS-------------PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADP---DSP---YHKPAFAED 61 (103)
T ss_pred CCHHHHHHHHhC-------------CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCc---ccc---ccccCCCCC
Confidence 567788877764 56899999999998 5799999999998665321100 000 011134555
Q ss_pred CceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCc
Q 025834 85 KTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENE 127 (247)
Q Consensus 85 ~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g 127 (247)
+ +||+||++|.|+..++..|...||++|+.|+||+.+|...+
T Consensus 62 ~-~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 62 K-PFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred C-eEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 4 79999999999999999999999999999999999997653
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=4.4e-19 Score=133.45 Aligned_cols=94 Identities=26% Similarity=0.447 Sum_probs=74.6
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEK 85 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~ 85 (247)
|+|+++.+++.+. .+++++||||++.||..||||||+|+|...+.... .. +.. .++
T Consensus 1 is~~~l~~~~~~~-----------~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~-----~~------~~~-~~~- 56 (95)
T cd01534 1 IGAAELARWAAEG-----------DRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET-----DH------FAP-VRG- 56 (95)
T ss_pred CCHHHHHHHHHcC-----------CCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH-----HH------hcc-cCC-
Confidence 5778888887641 13688999999999999999999999986553210 01 111 123
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
++||+||.+|.|+..++.+|+..||+ |+.|+||+.+|.
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 47999999999999999999999999 999999999996
No 14
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.78 E-value=7.6e-19 Score=133.88 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=76.5
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEK 85 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~ 85 (247)
||++++++++.+. .++++|||+|++.||..||||||+|+|...+....... ..+.....+.. .++
T Consensus 1 is~~~l~~~l~~~-----------~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~--~~~~~~~~~~~-~~~- 65 (105)
T cd01525 1 ISVYDVIRLLDNS-----------PAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGEL--EQLPTVPRLEN-YKG- 65 (105)
T ss_pred CCHHHHHHHHhCC-----------CCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccc--ccccchHHHHh-hcC-
Confidence 5788888888641 14689999999999999999999999987553211000 00000000111 123
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
++||+||.+|.++..+++.|+..||++|+.|+||+.+|+
T Consensus 66 ~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 66 KIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred CeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 479999999999999999999999999999999999995
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.78 E-value=8.4e-19 Score=135.52 Aligned_cols=102 Identities=26% Similarity=0.359 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 3 AIPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 3 a~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
+..++++++.++++.. .++++|||+|++.||..||||||+++|...+.. . .+..++
T Consensus 7 ~~~~s~~el~~~l~~~-----------~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~--------~-----~~~~i~ 62 (110)
T cd01521 7 AFETDCWDVAIALKNG-----------KPDFVLVDVRSAEAYARGHVPGAINLPHREICE--------N-----ATAKLD 62 (110)
T ss_pred eeecCHHHHHHHHHcC-----------CCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhh--------H-----hhhcCC
Confidence 3568889999888751 146899999999999999999999999876531 0 112355
Q ss_pred CCCceEEEEeCCCc--hHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 83 KEKTDILMYCTGGI--RCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 83 k~~~~Iv~YCtgG~--R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
+++ +||+||++|. ++..++..|++.||+ |+.|+||+.+|..+++|+
T Consensus 63 ~~~-~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 63 KEK-LFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCC-eEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 654 7999999874 899999999999995 999999999999998763
No 16
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=4.9e-19 Score=134.50 Aligned_cols=98 Identities=26% Similarity=0.424 Sum_probs=78.3
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEK 85 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~ 85 (247)
|+++++.+++... ..+++|||+|+..||..+|||||+|+|...+.+.. .. +...+++
T Consensus 2 i~~~~l~~~~~~~-----------~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~-----~~------~~~~~~~- 58 (101)
T cd01528 2 ISVAELAEWLADE-----------REEPVLIDVREPEELEIAFLPGFLHLPMSEIPERS-----KE------LDSDNPD- 58 (101)
T ss_pred CCHHHHHHHHhcC-----------CCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHH-----HH------hcccCCC-
Confidence 6788888888751 13689999999999999999999999987664210 11 1112334
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHC
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLEN 126 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~ 126 (247)
++||+||++|.|+..++.+|.+.||++|+.|+||+.+|.+.
T Consensus 59 ~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 59 KDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 47999999999999999999999999999999999999754
No 17
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.78 E-value=6.6e-19 Score=130.65 Aligned_cols=98 Identities=31% Similarity=0.448 Sum_probs=74.4
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
++++|||+|+..||..||||||+|+|...+...........+.........++++ +||+||.+|.++..++..|++.||
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~c~~g~~a~~~~~~l~~~G~ 81 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDK-PVVVYCRSGNRSAKAAWLLRELGF 81 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCC-eEEEEeCCCcHHHHHHHHHHHcCC
Confidence 6789999999999999999999999997664322111100000000112344544 799999999999999999999999
Q ss_pred CcEEEccchHHHHHHCcCC
Q 025834 111 HNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 111 ~nV~~L~GGi~~w~~~g~~ 129 (247)
++|++|+||+.+|...+++
T Consensus 82 ~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 82 KNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CceEEecCCHHHHHhcCCC
Confidence 9999999999999988754
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.78 E-value=5.1e-19 Score=132.43 Aligned_cols=93 Identities=29% Similarity=0.516 Sum_probs=78.3
Q ss_pred CCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhc--ccCCCcccCCccccccccCCcchhhhhccCCccCCC
Q 025834 5 PLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDI--GHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 5 ~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~--GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
++++.++.++++. +.+++|||+|++.||.. ||||||+|+|...+.+. +..++
T Consensus 1 ~i~~~~~~~~~~~------------~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~--------------~~~~~ 54 (96)
T cd01444 1 RISVDELAELLAA------------GEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW--------------LGDLD 54 (96)
T ss_pred CcCHHHHHHHHhc------------CCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH--------------HhhcC
Confidence 4678888888764 25689999999999999 99999999998766321 12245
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 83 KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 83 k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
+++ +||+||.+|.|+..++..|+..||++|+.|+||+.+|.
T Consensus 55 ~~~-~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 55 RDR-PVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 554 79999999999999999999999999999999999995
No 19
>PLN02160 thiosulfate sulfurtransferase
Probab=99.78 E-value=1.1e-18 Score=140.39 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCc--ccCCccccccccCCcchhhhhccCCccCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGA--RRPDVDCFRSTSFGLSQREAFASDPLADL 81 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGA--i~i~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (247)
..++++++.++++. +.+|||||++.||..|||||| +|+|...+.........+.... ....+
T Consensus 15 ~~i~~~e~~~~~~~--------------~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~--~~~~~ 78 (136)
T PLN02160 15 VSVDVSQAKTLLQS--------------GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQ--VSSLL 78 (136)
T ss_pred eEeCHHHHHHHHhC--------------CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHH--HHhcc
Confidence 45677777777653 357999999999999999999 8888743311000000110000 01113
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCce
Q 025834 82 DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131 (247)
Q Consensus 82 ~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~~ 131 (247)
++++ +||+||.+|.|+..++..|...||++|+.|.||+.+|.+++.|+.
T Consensus 79 ~~~~-~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 127 (136)
T PLN02160 79 NPAD-DILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPIN 127 (136)
T ss_pred CCCC-cEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcc
Confidence 4554 799999999999999999999999999999999999999999864
No 20
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.77 E-value=9.9e-19 Score=138.90 Aligned_cols=104 Identities=23% Similarity=0.354 Sum_probs=75.4
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccC----Cc--------------
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSF----GL-------------- 67 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~----~~-------------- 67 (247)
|+|+++.++++ ++.+|||||++.||..||||||+|+|+..+..... +.
T Consensus 1 ~s~~el~~~l~--------------~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (128)
T cd01520 1 ITAEDLLALRK--------------ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLEL 66 (128)
T ss_pred CCHHHHHHHHh--------------cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHH
Confidence 57888888775 35789999999999999999999999864321000 00
Q ss_pred ---chhhhhccCCccCCCCCCceEEEEeC-CCchHHHHHHHHHHcCCCcEEEccchHHHHHH
Q 025834 68 ---SQREAFASDPLADLDKEKTDILMYCT-GGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 125 (247)
Q Consensus 68 ---~~~~~~~~~~l~~l~k~~~~Iv~YCt-gG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~ 125 (247)
....+.....-..+++++ +||+||. +|.||..+++.|+.+|| +|+.|+||+.+|..
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~-~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 67 VSGKLKRILNEAWEARLERDP-KLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HhhhHHHHHHHHHHhccCCCC-eEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 000000000002466665 7999997 79999999999999999 59999999999974
No 21
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.77 E-value=2.1e-18 Score=142.80 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCch----hhhc---------ccCCCcccCCccccccccCCcchh
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGY----EWDI---------GHFHGARRPDVDCFRSTSFGLSQR 70 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~----E~~~---------GhipGAi~i~~~~~~~~~~~~~~~ 70 (247)
..|+++++.+++.+ ++++|||||+.. ||.. ||||||+|+|...+.++.... ..
T Consensus 36 ~~vs~~el~~~l~~-------------~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~-~~ 101 (162)
T TIGR03865 36 RVLDTEAAQALLAR-------------GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAW-QA 101 (162)
T ss_pred cccCHHHHHHHHhC-------------CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCch-hH
Confidence 56888888888875 568899999865 4543 499999999864332222110 00
Q ss_pred hhhcc-CCccCCCCCCceEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 71 EAFAS-DPLADLDKEKTDILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 71 ~~~~~-~~l~~l~k~~~~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
.+... ..+...+++ ++||+||.+|. ++..+++.|+.+||++|++|+||+.+|..+|+|+
T Consensus 102 ~~~~~l~~~~~~~~d-~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 102 YFRRGLERATGGDKD-RPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHhcCCCCC-CEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 01000 011112454 48999999997 8999999999999999999999999999999874
No 22
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.76 E-value=1e-18 Score=130.17 Aligned_cols=89 Identities=35% Similarity=0.584 Sum_probs=74.8
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEK 85 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~ 85 (247)
++|+++.+++. ++.++||+|+..+|..||||||+|+|...|.+. +..+++++
T Consensus 1 ~~~~e~~~~~~--------------~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~--------------~~~~~~~~ 52 (90)
T cd01524 1 VQWHELDNYRA--------------DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR--------------LNELPKDK 52 (90)
T ss_pred CCHHHHHHHhc--------------CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH--------------HHhcCCCC
Confidence 46888888873 567899999999999999999999998766421 11244544
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
+||+||.+|.++..++..|++.|| +|+.|+||+.+|.
T Consensus 53 -~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 53 -EIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred -cEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 799999999999999999999999 8999999999995
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.75 E-value=3.2e-18 Score=135.05 Aligned_cols=105 Identities=21% Similarity=0.395 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCcc-ccccccCCcchhhhhccCCccCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVD-CFRSTSFGLSQREAFASDPLADLD 82 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~-~~~~~~~~~~~~~~~~~~~l~~l~ 82 (247)
..|+|+++.+++..... ...++++|||||++.||..||||||+|+|.. .+.+ .+........++
T Consensus 2 ~~Is~~el~~~l~~~~~-------~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~--------~~~~~~~~~~~~ 66 (121)
T cd01530 2 KRISPETLARLLQGKYD-------NFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEE--------FFLDKPGVASKK 66 (121)
T ss_pred CccCHHHHHHHHhcccc-------cCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHH--------HHHHhhcccccC
Confidence 46899999999875110 0014689999999999999999999999985 3421 110000001245
Q ss_pred CCCceEEEEeC-CCchHHHHHHHHHHc------------CCCcEEEccchHHHHH
Q 025834 83 KEKTDILMYCT-GGIRCDVYSTILRQR------------GFHNLYTLKGGVSHYL 124 (247)
Q Consensus 83 k~~~~Iv~YCt-gG~R~e~aa~~L~~~------------Gf~nV~~L~GGi~~w~ 124 (247)
+++ +||+||. +|.|+..++++|++. ||.+||+|+|||.+|.
T Consensus 67 ~~~-~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 67 KRR-VLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred CCC-EEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 554 7999997 999999999999985 9999999999999985
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.75 E-value=3.8e-18 Score=133.64 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=80.1
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCc-------hhhhcccCCCcccCCccccccc----cCC-cchhhhh
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNG-------YEWDIGHFHGARRPDVDCFRST----SFG-LSQREAF 73 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~-------~E~~~GhipGAi~i~~~~~~~~----~~~-~~~~~~~ 73 (247)
++++++.+++.. ++.+|||+|++ .||..||||||+|+|...+... ... ...+++.
T Consensus 2 i~~~~l~~~l~~-------------~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd01448 2 VSPDWLAEHLDD-------------PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFA 68 (122)
T ss_pred cCHHHHHHHhCC-------------CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHH
Confidence 578888888764 56899999999 8999999999999998765431 111 1111111
Q ss_pred ccCCccCCCCCCceEEEEeCC-CchHHHHHHHHHHcCCCcEEEccchHHHHHHCc
Q 025834 74 ASDPLADLDKEKTDILMYCTG-GIRCDVYSTILRQRGFHNLYTLKGGVSHYLENE 127 (247)
Q Consensus 74 ~~~~l~~l~k~~~~Iv~YCtg-G~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g 127 (247)
.......+++++ +||+||.+ |.++..+++.|+.+||++|+.|+||+.+|..++
T Consensus 69 ~~~~~~~~~~~~-~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 69 ELLGSLGISNDD-TVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHcCCCCCC-EEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 110111345554 79999998 589999999999999999999999999998754
No 25
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=1.8e-18 Score=134.44 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=76.9
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhc-----------ccCCCcccCCccccccccCCc-chhhhh
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDI-----------GHFHGARRPDVDCFRSTSFGL-SQREAF 73 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~-----------GhipGAi~i~~~~~~~~~~~~-~~~~~~ 73 (247)
++++++.+++++ ++++|||+|+..||.. ||||||+++|...+....... ..+++.
T Consensus 1 ~s~~~l~~~l~~-------------~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDS-------------GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCC-------------CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHH
Confidence 467777777653 5689999999999976 999999999987654311101 011111
Q ss_pred ccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 74 ASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 74 ~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
.......+++++ +||+||++|.|+..++++|+..||++|+.|+||+.+|.
T Consensus 68 ~~~~~~~~~~~~-~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 68 ALFAALGITPDK-PVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHHHcCCCCCC-CEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 100011244554 79999999999999999999999999999999999996
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.75 E-value=2.6e-18 Score=129.33 Aligned_cols=85 Identities=25% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
++++|||+|++.||..||||||+|+|...+... ...+.. +..+++++ +||+||++|.++..++.+|+..||
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~-----~~~~~~---~~~~~~~~-~ivv~c~~g~~s~~~~~~l~~~G~ 81 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR-----SQELQA---LEAPGRAT-RYVLTCDGSLLARFAAQELLALGG 81 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC-----HHHHHH---hhcCCCCC-CEEEEeCChHHHHHHHHHHHHcCC
Confidence 678999999999999999999999997655311 111110 22234554 699999999999999999999999
Q ss_pred CcEEEccchHHHHH
Q 025834 111 HNLYTLKGGVSHYL 124 (247)
Q Consensus 111 ~nV~~L~GGi~~w~ 124 (247)
++|++|+||+.+|.
T Consensus 82 ~~v~~l~GG~~~W~ 95 (96)
T cd01529 82 KPVALLDGGTSAWV 95 (96)
T ss_pred CCEEEeCCCHHHhc
Confidence 99999999999995
No 27
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.74 E-value=4e-18 Score=130.09 Aligned_cols=106 Identities=31% Similarity=0.557 Sum_probs=76.2
Q ss_pred CHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhh--ccCCccCCCCC
Q 025834 7 APSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAF--ASDPLADLDKE 84 (247)
Q Consensus 7 sp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~--~~~~l~~l~k~ 84 (247)
||+++.+++. +++++|||+|++.+|..||||||+|+|...+............. .......++++
T Consensus 1 s~~el~~~l~-------------~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (113)
T PF00581_consen 1 SPEELKEMLE-------------NESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKD 67 (113)
T ss_dssp -HHHHHHHHT-------------TTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTT
T ss_pred CHHHHHhhhh-------------CCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccccccccccccccccccccc
Confidence 5788888883 38899999999999999999999999996551100001111110 01111223454
Q ss_pred CceEEEEeCCCchHHHHHHH-----HHHcCCCcEEEccchHHHHHHC
Q 025834 85 KTDILMYCTGGIRCDVYSTI-----LRQRGFHNLYTLKGGVSHYLEN 126 (247)
Q Consensus 85 ~~~Iv~YCtgG~R~e~aa~~-----L~~~Gf~nV~~L~GGi~~w~~~ 126 (247)
+ +||+||.+|.++..+++. |.+.||++|++|+||+.+|.++
T Consensus 68 ~-~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 68 K-DIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp S-EEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred c-cceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 4 799999999998887776 8889999999999999999863
No 28
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.73 E-value=7.2e-18 Score=132.03 Aligned_cols=104 Identities=25% Similarity=0.426 Sum_probs=79.6
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhh-cccCCCcccCCccccccccCCcchhhhhccCCccCCCCC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWD-IGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKE 84 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~-~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~ 84 (247)
|+|+++.+++++ +++.+|||||++.||+ .||||||+|+|...+..... ...+.. ......+++
T Consensus 1 is~~el~~~l~~------------~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~---~~~~~~-~l~~~~~~~ 64 (117)
T cd01522 1 LTPAEAWALLQA------------DPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEI---NPNFLA-ELEEKVGKD 64 (117)
T ss_pred CCHHHHHHHHHh------------CCCeEEEECCCHHHHhcccCCCCceecchhhcccccc---CHHHHH-HHHhhCCCC
Confidence 578888888875 3578999999999999 99999999999876532100 001100 000112344
Q ss_pred CceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHC
Q 025834 85 KTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLEN 126 (247)
Q Consensus 85 ~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~ 126 (247)
++||+||.+|.|+..++..|+..||++|+.|.||+.+|...
T Consensus 65 -~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 65 -RPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred -CeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 47999999999999999999999999999999999999754
No 29
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=131.03 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=74.7
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
+++++||||.+.||..||+|.+||+|...... .+.....++...-.. ..++.++.||+||.+|.|+-+|+..|...||
T Consensus 37 ~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-~~~l~~~eF~kqvg~-~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gy 114 (136)
T KOG1530|consen 37 PDVVLLDVREPEEFKQGHIPASINIPYMSRPG-AGALKNPEFLKQVGS-SKPPHDKEIIFGCASGVRSLKATKILVSAGY 114 (136)
T ss_pred CCEEEEeecCHHHhhccCCcceEecccccccc-ccccCCHHHHHHhcc-cCCCCCCcEEEEeccCcchhHHHHHHHHcCc
Confidence 56999999999999999999999999854321 111111222111111 1233334799999999999999999999999
Q ss_pred CcEEEccchHHHHHHCcCCc
Q 025834 111 HNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 111 ~nV~~L~GGi~~w~~~g~~~ 130 (247)
+||..+.||+.+|.+.+++.
T Consensus 115 knv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 115 KNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred ccccccCccHHHHHHccCCC
Confidence 99999999999999998774
No 30
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=3.6e-17 Score=126.87 Aligned_cols=102 Identities=18% Similarity=0.375 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
+.|+++++.+++... .++++|||||+. ||..||||||+++|...|.... .++.. ....++
T Consensus 2 ~~is~~~l~~~~~~~-----------~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----~~~~~---~~~~~~ 61 (113)
T cd01531 2 SYISPAQLKGWIRNG-----------RPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----NQLVQ---LLSGSK 61 (113)
T ss_pred CcCCHHHHHHHHHcC-----------CCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----HHHHH---HHhcCC
Confidence 568899999988651 146789999999 9999999999999998764211 11111 011234
Q ss_pred CCceEEEEeC-CCchHHHHHHHHHH--------cCCCcEEEccchHHHHHHC
Q 025834 84 EKTDILMYCT-GGIRCDVYSTILRQ--------RGFHNLYTLKGGVSHYLEN 126 (247)
Q Consensus 84 ~~~~Iv~YCt-gG~R~e~aa~~L~~--------~Gf~nV~~L~GGi~~w~~~ 126 (247)
++ +||+||. +|.|+..++..|.+ .||.+|+.|+||+.+|.+.
T Consensus 62 ~~-~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 62 KD-TVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CC-eEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 44 7999998 77899988887754 4999999999999999864
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.69 E-value=4.2e-17 Score=122.18 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCC-CCCCceEEEEeCCCch--HHHHHHHHH
Q 025834 30 NRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADL-DKEKTDILMYCTGGIR--CDVYSTILR 106 (247)
Q Consensus 30 ~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l-~k~~~~Iv~YCtgG~R--~e~aa~~L~ 106 (247)
.++++|||+|++.||..||||||+|+|...+... . ...+ +++ ++||+||.+|.| +..++..|+
T Consensus 8 ~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~-------~------~~~~~~~~-~~ivl~c~~G~~~~s~~aa~~L~ 73 (92)
T cd01532 8 REEIALIDVREEDPFAQSHPLWAANLPLSRLELD-------A------WVRIPRRD-TPIVVYGEGGGEDLAPRAARRLS 73 (92)
T ss_pred CCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh-------h------HhhCCCCC-CeEEEEeCCCCchHHHHHHHHHH
Confidence 3678999999999999999999999998755310 0 0012 233 489999999987 578999999
Q ss_pred HcCCCcEEEccchHHHHH
Q 025834 107 QRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 107 ~~Gf~nV~~L~GGi~~w~ 124 (247)
+.||++|+.|+||+.+|.
T Consensus 74 ~~G~~~v~~l~GG~~~W~ 91 (92)
T cd01532 74 ELGYTDVALLEGGLQGWR 91 (92)
T ss_pred HcCccCEEEccCCHHHHc
Confidence 999999999999999996
No 32
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.69 E-value=4.7e-17 Score=132.39 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHc
Q 025834 29 LNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQR 108 (247)
Q Consensus 29 ~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~ 108 (247)
.+.+++|||||+..+|..||||||++++...|.. . +..++++ .+||+||.+|.++..+++.|+..
T Consensus 8 ~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~---------~-----l~~l~~~-~~vVv~c~~g~~a~~aa~~L~~~ 72 (145)
T cd01535 8 EGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ---------A-----LEKLPAA-ERYVLTCGSSLLARFAAADLAAL 72 (145)
T ss_pred CCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH---------H-----HHhcCCC-CCEEEEeCCChHHHHHHHHHHHc
Confidence 3467999999999999999999999998765531 1 1223444 37999999999999999999999
Q ss_pred CCCcEEEccchHHHHHHCcCCcee
Q 025834 109 GFHNLYTLKGGVSHYLENEGPVEW 132 (247)
Q Consensus 109 Gf~nV~~L~GGi~~w~~~g~~~~~ 132 (247)
||++|+.|+||+.+|..++.|+..
T Consensus 73 G~~~v~~L~GG~~aW~~~g~pl~~ 96 (145)
T cd01535 73 TVKPVFVLEGGTAAWIAAGLPVES 96 (145)
T ss_pred CCcCeEEecCcHHHHHHCCCCccc
Confidence 999999999999999999998653
No 33
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.67 E-value=9.5e-17 Score=117.40 Aligned_cols=82 Identities=35% Similarity=0.621 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcC
Q 025834 30 NRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRG 109 (247)
Q Consensus 30 ~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~G 109 (247)
+++.+|||+|+..||+.||||||+++|...+.... .....+++. +||+||.+|.++..++..|++.|
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~------------~~~~~~~~~-~vv~~c~~~~~a~~~~~~l~~~G 74 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------ALLELDKDK-PIVVYCRSGNRSARAAKLLRKAG 74 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchHHHhhHH------------HhhccCCCC-eEEEEeCCCchHHHHHHHHHHhC
Confidence 37899999999999999999999999987653210 112244544 79999999999999999999999
Q ss_pred CCcEEEccchHHHHH
Q 025834 110 FHNLYTLKGGVSHYL 124 (247)
Q Consensus 110 f~nV~~L~GGi~~w~ 124 (247)
|.+|++|.||+.+|.
T Consensus 75 ~~~v~~l~gG~~~w~ 89 (89)
T cd00158 75 GTNVYNLEGGMLAWK 89 (89)
T ss_pred cccEEEecCChhhcC
Confidence 999999999999984
No 34
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.7e-16 Score=120.07 Aligned_cols=89 Identities=30% Similarity=0.578 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCchhhhcccCCC-cccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHc
Q 025834 30 NRDFILLDVRNGYEWDIGHFHG-ARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQR 108 (247)
Q Consensus 30 ~~~~vvIDvRn~~E~~~GhipG-Ai~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~ 108 (247)
.++.++||||++.||+.+|||| ++++|...+.+... ... ++++ ++||+||.+|.|+..++..|++.
T Consensus 18 ~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~-----------~~~-~~~~-~~ivv~C~~G~rS~~aa~~L~~~ 84 (110)
T COG0607 18 GEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN-----------LLE-LPDD-DPIVVYCASGVRSAAAAAALKLA 84 (110)
T ss_pred cCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc-----------ccc-cCCC-CeEEEEeCCCCChHHHHHHHHHc
Confidence 3689999999999999999999 99999987753210 000 3455 47999999999999999999999
Q ss_pred CCCcEEEccchHHHHHHCcCCce
Q 025834 109 GFHNLYTLKGGVSHYLENEGPVE 131 (247)
Q Consensus 109 Gf~nV~~L~GGi~~w~~~g~~~~ 131 (247)
||++++.|.||+.+|..++.+..
T Consensus 85 G~~~~~~l~gG~~~w~~~~~~~~ 107 (110)
T COG0607 85 GFTNVYNLDGGIDAWKGAGLPLV 107 (110)
T ss_pred CCccccccCCcHHHHHhcCCCcc
Confidence 99999999999999999988754
No 35
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.66 E-value=2.7e-16 Score=126.88 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCc--------hhhhc------------ccCCCcccCCccccccccC
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNG--------YEWDI------------GHFHGARRPDVDCFRSTSF 65 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~--------~E~~~------------GhipGAi~i~~~~~~~~~~ 65 (247)
++++++.+.+.... .+++++|||+|.. .+|.. ||||||+++|+..+.....
T Consensus 1 vs~e~l~~~l~~~~---------~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~ 71 (138)
T cd01445 1 KSTEQLAENLEAGK---------VGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAG 71 (138)
T ss_pred CCHHHHHHHhhccc---------cCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCC
Confidence 46777777776310 1267999999987 78887 9999999999876533111
Q ss_pred ----Ccc-hhhhhccCCccCCCCCCceEEEEeCC---CchHHHHHHHHHHcCCCcEEEccchHHHHH
Q 025834 66 ----GLS-QREAFASDPLADLDKEKTDILMYCTG---GIRCDVYSTILRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 66 ----~~~-~~~~~~~~~l~~l~k~~~~Iv~YCtg---G~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~ 124 (247)
..+ .+++.......++++++ +||+||++ |.++.++++.|+.+|+++|++|+||+.+|.
T Consensus 72 ~~~~~~p~~~~~~~~~~~~GI~~~~-~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 72 FEESMEPSEAEFAAMFEAKGIDLDK-HLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCCHHHHHHHHHHcCCCCCC-eEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 111 11222111122466665 79999986 788999999999999999999999999996
No 36
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.65 E-value=3.9e-16 Score=139.64 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCC----------chhhhcccCCCcccCCcccccccc----CCc-c
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRN----------GYEWDIGHFHGARRPDVDCFRSTS----FGL-S 68 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn----------~~E~~~GhipGAi~i~~~~~~~~~----~~~-~ 68 (247)
.-++++++++.+.+ ++++|||+|+ +.+|..||||||+|+|+..+.... ... .
T Consensus 5 ~lvs~~~l~~~l~~-------------~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~ 71 (281)
T PRK11493 5 WFVAADWLAEHIDD-------------PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPR 71 (281)
T ss_pred cccCHHHHHHhcCC-------------CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCC
Confidence 45788888888875 6799999997 678999999999999987654321 111 1
Q ss_pred hhhhhccCCccCCCCCCceEEEEeCCCch-HHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 69 QREAFASDPLADLDKEKTDILMYCTGGIR-CDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 69 ~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R-~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
.+++.......++++++ +||+||++|.+ +.++++.|...||++|++|+||+.+|.+++.|+
T Consensus 72 ~~~~~~~~~~~Gi~~d~-~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 133 (281)
T PRK11493 72 PETFAVAMRELGVNQDK-HLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLL 133 (281)
T ss_pred HHHHHHHHHHcCCCCCC-EEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCc
Confidence 11221111112356665 79999998775 667888899999999999999999999887764
No 37
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.65 E-value=2.7e-16 Score=122.04 Aligned_cols=104 Identities=21% Similarity=0.370 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
+.|+|+++++++...... ..++++|||||+. ||..||||||+|+|...+.+.. .+.... +. ..+
T Consensus 2 ~~is~~el~~~l~~~~~~-------~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-----~~~~~~--~~-~~~ 65 (113)
T cd01443 2 KYISPEELVALLENSDSN-------AGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-----PQVYAL--FS-LAG 65 (113)
T ss_pred cccCHHHHHHHHhCCccc-------cCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-----HHHHHH--hh-hcC
Confidence 468999999998751000 0136899999999 9999999999999987664211 111110 11 122
Q ss_pred CCceEEEEeCC-CchHHHHHHHHHH----cCC--CcEEEccchHHHHH
Q 025834 84 EKTDILMYCTG-GIRCDVYSTILRQ----RGF--HNLYTLKGGVSHYL 124 (247)
Q Consensus 84 ~~~~Iv~YCtg-G~R~e~aa~~L~~----~Gf--~nV~~L~GGi~~w~ 124 (247)
. ++||+||.+ |.|+..++.+|.+ .|| .+|+.|+||+.+|.
T Consensus 66 ~-~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 66 V-KLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred C-CEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 3 379999986 6898888776554 465 78999999999995
No 38
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.64 E-value=3.6e-16 Score=145.29 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
+.++++++.+++++ +.+|||+|++.||..||||||+|+|...+.... . . + ..++
T Consensus 3 ~~is~~el~~~l~~--------------~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------~-~-~-~~~~ 56 (376)
T PRK08762 3 REISPAEARARAAQ--------------GAVLIDVREAHERASGQAEGALRIPRGFLELRI---------E-T-H-LPDR 56 (376)
T ss_pred ceeCHHHHHHHHhC--------------CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHH---------h-h-h-cCCC
Confidence 46888899888863 478999999999999999999999987653210 0 0 0 1234
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 84 EKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 84 ~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
+ ++||+||.+|.|+..++..|++.||++|++|+||+.+|.+++.|+
T Consensus 57 ~-~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 102 (376)
T PRK08762 57 D-REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPL 102 (376)
T ss_pred C-CeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcc
Confidence 4 479999999999999999999999999999999999999887764
No 39
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.64 E-value=7e-16 Score=144.18 Aligned_cols=101 Identities=31% Similarity=0.587 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
..++++++.+++++ +++++|||+|++.||..||||||+|+|...+... ..+..+++
T Consensus 287 ~~Is~~el~~~l~~------------~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~------------~~~~~l~~ 342 (392)
T PRK07878 287 STITPRELKEWLDS------------GKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG------------EALAKLPQ 342 (392)
T ss_pred CccCHHHHHHHHhC------------CCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch------------hHHhhCCC
Confidence 34666677666653 3568999999999999999999999998765320 01223556
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCC
Q 025834 84 EKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 84 ~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~ 129 (247)
++ +||+||.+|.|+..++..|++.||++|+.|+||+.+|.++..+
T Consensus 343 d~-~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 343 DR-TIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred CC-cEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 54 7999999999999999999999999999999999999987654
No 40
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.62 E-value=1.3e-15 Score=149.25 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccc----cCCcc-hhhhhccCCc
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRST----SFGLS-QREAFASDPL 78 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~----~~~~~-~~~~~~~~~l 78 (247)
..++++++++++++ ++++|||+|+..+|..||||||+++|+..+... +...+ .+++......
T Consensus 9 ~lIs~~eL~~~l~~-------------~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~ 75 (610)
T PRK09629 9 LVIEPNDLLERLDA-------------PELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGE 75 (610)
T ss_pred ceecHHHHHHHhcC-------------CCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHH
Confidence 46889999999875 679999999999999999999999997643211 11111 1122211111
Q ss_pred cCCCCCCceEEEEeCCC-chHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 79 ADLDKEKTDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 79 ~~l~k~~~~Iv~YCtgG-~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
.++++++ +||+||.+| .++.++++.|+.+||++|++|+||+.+|..+++|+
T Consensus 76 lGI~~d~-~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~ 127 (610)
T PRK09629 76 LGHNPDA-VYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPL 127 (610)
T ss_pred cCCCCCC-EEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcc
Confidence 2355654 799999976 57889999999999999999999999999988764
No 41
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=2.2e-15 Score=137.26 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcC--------C-chhhhcccCCCcccCCcccccccc----CCcc-h
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVR--------N-GYEWDIGHFHGARRPDVDCFRSTS----FGLS-Q 69 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvR--------n-~~E~~~GhipGAi~i~~~~~~~~~----~~~~-~ 69 (247)
..++++++++.+.+ ++++|||+| + ..+|..||||||+++++..+.+.. ...+ .
T Consensus 22 ~lvs~~~L~~~l~~-------------~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~ 88 (320)
T PLN02723 22 PVVSVDWLHANLRE-------------PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSE 88 (320)
T ss_pred ceecHHHHHHHhcC-------------CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCH
Confidence 35777888777764 679999996 3 368999999999999987654321 1111 1
Q ss_pred hhhhccCCccCCCCCCceEEEEeCCCch-HHHHHHHHHHcCCCcEEEccchHHHHHHCcCCce
Q 025834 70 REAFASDPLADLDKEKTDILMYCTGGIR-CDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131 (247)
Q Consensus 70 ~~~~~~~~l~~l~k~~~~Iv~YCtgG~R-~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~~ 131 (247)
+.+.......++.+++ +||+||.+|.+ +.++++.|+.+||++|++|+||+.+|.++|+|+.
T Consensus 89 ~~~~~~l~~~Gi~~~~-~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~ 150 (320)
T PLN02723 89 EAFAAAVSALGIENKD-GVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVE 150 (320)
T ss_pred HHHHHHHHHcCCCCCC-EEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcc
Confidence 1111111112345554 79999987765 5678889999999999999999999999988764
No 42
>PRK07411 hypothetical protein; Validated
Probab=99.60 E-value=2.2e-15 Score=140.76 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=71.4
Q ss_pred CeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCCC
Q 025834 32 DFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGFH 111 (247)
Q Consensus 32 ~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~ 111 (247)
+++|||||++.||+.||||||+|+|+..+.+... . ..+..+++++ +||+||.+|.||..++.+|++.||+
T Consensus 299 ~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~---~------~~l~~l~~d~-~IVvyC~~G~RS~~aa~~L~~~G~~ 368 (390)
T PRK07411 299 DFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPG---V------EKVKELLNGH-RLIAHCKMGGRSAKALGILKEAGIE 368 (390)
T ss_pred CeEEEECCCHHHhccCcCCCCEEccHHHhhcccc---h------HHHhhcCCCC-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999876643210 0 1122344554 7999999999999999999999998
Q ss_pred cEEEccchHHHHHHCcCCc
Q 025834 112 NLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 112 nV~~L~GGi~~w~~~g~~~ 130 (247)
+ +.|.||+.+|.++..|.
T Consensus 369 ~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 369 G-TNVKGGITAWSREVDPS 386 (390)
T ss_pred e-EEecchHHHHHHhcCCC
Confidence 5 68999999999887664
No 43
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.60 E-value=1.4e-15 Score=116.53 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=65.7
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
....+||+|++.||..||||||+|+|...+.+. +. .+ ..+++ ++||+||.+|.|+..++..|++.||
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~--------l~---~~-~~~~~-~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEH--------IA---TA-VPDKN-DTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHH--------HH---Hh-CCCCC-CeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 566799999999999999999999998765321 10 01 11233 4799999999999999999999999
Q ss_pred CcEEEccchHHHHHH
Q 025834 111 HNLYTLKGGVSHYLE 125 (247)
Q Consensus 111 ~nV~~L~GGi~~w~~ 125 (247)
++|+.+ ||+.+|.-
T Consensus 84 ~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 84 THAENA-GGIKDIAM 97 (101)
T ss_pred CeEEec-CCHHHhhh
Confidence 999986 99999963
No 44
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.58 E-value=3e-15 Score=133.93 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCeEEEEcCCchhhh-----------cccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHH
Q 025834 31 RDFILLDVRNGYEWD-----------IGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCD 99 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~-----------~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e 99 (247)
.+++|||+|+..||. .||||||+|+|+..+.+.....+..++.......++++++ +||+||++|+|+.
T Consensus 167 ~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~ii~yC~~G~~A~ 245 (281)
T PRK11493 167 KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDR-PIIASCGSGVTAA 245 (281)
T ss_pred CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC-CEEEECCcHHHHH
Confidence 467899999999984 6999999999987764321122223332211223456665 7999999999999
Q ss_pred HHHHHHHHcCCCcEEEccchHHHHHH-CcCCce
Q 025834 100 VYSTILRQRGFHNLYTLKGGVSHYLE-NEGPVE 131 (247)
Q Consensus 100 ~aa~~L~~~Gf~nV~~L~GGi~~w~~-~g~~~~ 131 (247)
.++..|+.+||+||+.|+||+..|.. .+.|++
T Consensus 246 ~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~ 278 (281)
T PRK11493 246 VVVLALATLDVPNVKLYDGAWSEWGARADLPVE 278 (281)
T ss_pred HHHHHHHHcCCCCceeeCCCHHHHccCCCCCcC
Confidence 99999999999999999999999997 577754
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.58 E-value=3.9e-15 Score=135.67 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=74.9
Q ss_pred CCeEEEEcCCchhh-----------hcccCCCcccCCcccccccc-CCcchhhhhccCCccCCCCCCceEEEEeCCCchH
Q 025834 31 RDFILLDVRNGYEW-----------DIGHFHGARRPDVDCFRSTS-FGLSQREAFASDPLADLDKEKTDILMYCTGGIRC 98 (247)
Q Consensus 31 ~~~vvIDvRn~~E~-----------~~GhipGAi~i~~~~~~~~~-~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~ 98 (247)
++++|||+|++.|| ..||||||+|+|+..+.+.. .+.+.+++.......++++++ +||+||++|.|+
T Consensus 204 ~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~-~iv~yC~sG~~A 282 (320)
T PLN02723 204 KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDS-PIVASCGTGVTA 282 (320)
T ss_pred CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCC-CEEEECCcHHHH
Confidence 56889999998888 56999999999987654321 223333333221122466665 799999999999
Q ss_pred HHHHHHHHHcCCCcEEEccchHHHHHHCc-CCc
Q 025834 99 DVYSTILRQRGFHNLYTLKGGVSHYLENE-GPV 130 (247)
Q Consensus 99 e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g-~~~ 130 (247)
..++..|+.+||++|++|+||+..|.... .|+
T Consensus 283 ~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 283 CILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 99999999999999999999999998753 443
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.58 E-value=3.7e-15 Score=114.78 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=65.3
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
.+-++||+|++.||+.||||||+|+|...+.+. +. .+ ..+++ ++||+||.+|.|+..++..|.+.||
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~--------l~---~l-~~~~~-~~IVlyC~~G~rS~~aa~~L~~~G~ 85 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER--------IA---TA-VPDKN-DTVKLYCNAGRQSGQAKEILSEMGY 85 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHH--------HH---hc-CCCCC-CeEEEEeCCChHHHHHHHHHHHcCC
Confidence 456799999999999999999999998765321 10 01 12333 4799999999999999999999999
Q ss_pred CcEEEccchHHHHHH
Q 025834 111 HNLYTLKGGVSHYLE 125 (247)
Q Consensus 111 ~nV~~L~GGi~~w~~ 125 (247)
++|+. .||+.+|.-
T Consensus 86 ~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 86 THAEN-AGGLKDIAM 99 (104)
T ss_pred CeEEe-cCCHHHHhh
Confidence 99987 699999963
No 47
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.51 E-value=4.4e-14 Score=130.50 Aligned_cols=82 Identities=23% Similarity=0.517 Sum_probs=68.3
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
.+.+|||+|++.||..||||||+|+|...+.... ....+++++ +||+||.+|.|+.+++..|+..||
T Consensus 273 ~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~------------~~~~~~~~~-~IvvyC~~G~rS~~Aa~~L~~~G~ 339 (355)
T PRK05597 273 DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGA------------NPPSVSAGD-EVVVYCAAGVRSAQAVAILERAGY 339 (355)
T ss_pred CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcc------------ccccCCCCC-eEEEEcCCCHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999987653210 001234444 799999999999999999999999
Q ss_pred CcEEEccchHHHHHH
Q 025834 111 HNLYTLKGGVSHYLE 125 (247)
Q Consensus 111 ~nV~~L~GGi~~w~~ 125 (247)
++|+.|+||+.+|.+
T Consensus 340 ~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 340 TGMSSLDGGIEGWLD 354 (355)
T ss_pred CCEEEecCcHHHHhh
Confidence 999999999999975
No 48
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.51 E-value=3e-14 Score=139.75 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=81.6
Q ss_pred CCeEEEEcCCchhhh--------cccCCCcccCCcccccccc-CCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHH
Q 025834 31 RDFILLDVRNGYEWD--------IGHFHGARRPDVDCFRSTS-FGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVY 101 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~--------~GhipGAi~i~~~~~~~~~-~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~a 101 (247)
++++|||+|++.||. .||||||+|+|+..+.+.. .....+++.......++++++ +||+||.+|.|+..+
T Consensus 161 ~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~-~VVvYC~sG~rAa~~ 239 (610)
T PRK09629 161 ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDK-EVITHCQTHHRSGFT 239 (610)
T ss_pred CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCC-CEEEECCCChHHHHH
Confidence 578899999999994 6999999999986543211 112222222111122456665 799999999999999
Q ss_pred HHHHHHcCCCcEEEccchHHHHHHC-cCCceeecceeEEee
Q 025834 102 STILRQRGFHNLYTLKGGVSHYLEN-EGPVEWVGNLFVFDS 141 (247)
Q Consensus 102 a~~L~~~Gf~nV~~L~GGi~~w~~~-g~~~~~~G~~fvFD~ 141 (247)
++.|+..||++|++++||+.+|... ..|+...|.+-|--+
T Consensus 240 ~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~~~~~~~~ 280 (610)
T PRK09629 240 YLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPTVAAAPIE 280 (610)
T ss_pred HHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCCCCccccc
Confidence 9999999999999999999999975 568777776655443
No 49
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.50 E-value=6.7e-14 Score=111.33 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCcccccc--ccCCcch-h-hh---hccCCc
Q 025834 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRS--TSFGLSQ-R-EA---FASDPL 78 (247)
Q Consensus 6 Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~--~~~~~~~-~-~~---~~~~~l 78 (247)
|+|+++.+.++.. .++++|||+|+..+|..||||||+++|...+.. ....... . .+ .....+
T Consensus 2 is~~~l~~~l~~~-----------~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (132)
T cd01446 2 IDCAWLAALLREG-----------GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL 70 (132)
T ss_pred cCHHHHHHHHhcC-----------CCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH
Confidence 6889999988751 257999999999999999999999999875321 0000000 0 00 000112
Q ss_pred cCCCCCCceEEEEeCCCch---------HHHHHHHHHH--cCCCcEEEccchHHHHHHCc
Q 025834 79 ADLDKEKTDILMYCTGGIR---------CDVYSTILRQ--RGFHNLYTLKGGVSHYLENE 127 (247)
Q Consensus 79 ~~l~k~~~~Iv~YCtgG~R---------~e~aa~~L~~--~Gf~nV~~L~GGi~~w~~~g 127 (247)
... ++ ++||+||.+|.+ +..+...|.. .|+.+|++|+||+.+|.+..
T Consensus 71 ~~~-~~-~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~~ 128 (132)
T cd01446 71 RRG-ES-LAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSEF 128 (132)
T ss_pred hcC-CC-CeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhhC
Confidence 122 23 479999998875 5666667776 47789999999999998754
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.49 E-value=5.4e-14 Score=129.32 Aligned_cols=96 Identities=27% Similarity=0.380 Sum_probs=67.8
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCcccccccc-C---C--------------cchhhhhc--cCCccCCC-CCCceEE
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTS-F---G--------------LSQREAFA--SDPLADLD-KEKTDIL 89 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~-~---~--------------~~~~~~~~--~~~l~~l~-k~~~~Iv 89 (247)
++++|||||++.||..||||||+|+|..+..+.. . + ....++.. ...+..++ ++ ++||
T Consensus 14 ~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~~~~~-~~iv 92 (345)
T PRK11784 14 NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADFPRAN-PRGL 92 (345)
T ss_pred CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhcccCC-CeEE
Confidence 5789999999999999999999999995432100 0 0 00000000 00011122 33 4799
Q ss_pred EEe-CCCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcC
Q 025834 90 MYC-TGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEG 128 (247)
Q Consensus 90 ~YC-tgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~ 128 (247)
+|| .||.||..++++|...|| +|+.|+||+.+|...+.
T Consensus 93 vyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 93 LYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred EEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 999 589999999999999999 59999999999987654
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.46 E-value=8.2e-14 Score=126.45 Aligned_cols=96 Identities=26% Similarity=0.261 Sum_probs=66.8
Q ss_pred CeEEEEcCCchhhhcccCCCcccCCcccccccc----CCcc--h------------hhhh--ccCCccCCCCCCceEEEE
Q 025834 32 DFILLDVRNGYEWDIGHFHGARRPDVDCFRSTS----FGLS--Q------------REAF--ASDPLADLDKEKTDILMY 91 (247)
Q Consensus 32 ~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~----~~~~--~------------~~~~--~~~~l~~l~k~~~~Iv~Y 91 (247)
+.+|||||++.||..||||||+|+|..+..+.. .+.. . ..+. ........+++. +||+|
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~-~vvvy 80 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPP-QPLLY 80 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCC-cEEEE
Confidence 358999999999999999999999985432100 0000 0 0000 000011123332 49999
Q ss_pred eC-CCchHHHHHHHHHHcCCCcEEEccchHHHHHHCcCC
Q 025834 92 CT-GGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 92 Ct-gG~R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~ 129 (247)
|. +|.||..++++|+.+|| +|+.|+||+.+|...+.+
T Consensus 81 C~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~ 118 (311)
T TIGR03167 81 CWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID 118 (311)
T ss_pred ECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence 94 89999999999999999 699999999999887644
No 52
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.45 E-value=9.7e-14 Score=128.87 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCC---CcccCCccccccccCCcchhhhhccCCccCC
Q 025834 5 PLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFH---GARRPDVDCFRSTSFGLSQREAFASDPLADL 81 (247)
Q Consensus 5 ~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~Ghip---GAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (247)
.++++++.+++++ .+.+|||||++.||+.|||| ||+|+|...+.+... . ...+..+
T Consensus 272 ~~~~~el~~~l~~-------------~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~-----~---~~~l~~~ 330 (370)
T PRK05600 272 RTDTTSLIDATLN-------------GSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDAD-----I---LHALSPI 330 (370)
T ss_pred ccCHHHHHHHHhc-------------CCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchh-----h---hhhcccc
Confidence 3566777776654 45789999999999999998 699999887743110 0 0112223
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHcCCCc-EEEccchHH
Q 025834 82 DKEKTDILMYCTGGIRCDVYSTILRQRGFHN-LYTLKGGVS 121 (247)
Q Consensus 82 ~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf~n-V~~L~GGi~ 121 (247)
++ + +||+||.+|.||..++.+|++.||++ |+.|.||+.
T Consensus 331 ~~-~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DG-D-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CC-C-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 33 3 79999999999999999999999996 999999974
No 53
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2.3e-13 Score=121.79 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCchhhhc----------ccCCCcccCCcccccccc-CCcchhhhhccCCccCCCCCCceEEEEeCCCchH
Q 025834 30 NRDFILLDVRNGYEWDI----------GHFHGARRPDVDCFRSTS-FGLSQREAFASDPLADLDKEKTDILMYCTGGIRC 98 (247)
Q Consensus 30 ~~~~vvIDvRn~~E~~~----------GhipGAi~i~~~~~~~~~-~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~ 98 (247)
....+|||+|++.||.. ||||||+|+|+..+.+.. +....++........++++++ +||+||..|.|+
T Consensus 169 ~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~-~vI~yCgsG~~A 247 (285)
T COG2897 169 VPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDK-EVIVYCGSGVRA 247 (285)
T ss_pred CCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCC-CEEEEcCCchHH
Confidence 36778999999999988 999999999998776522 222222322222234577776 699999999999
Q ss_pred HHHHHHHHHcCCCcEEEccchHHHHHHCcC
Q 025834 99 DVYSTILRQRGFHNLYTLKGGVSHYLENEG 128 (247)
Q Consensus 99 e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~ 128 (247)
......|...|+.++..++|++..|.....
T Consensus 248 s~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 248 SVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred HHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 999999999999988999999999998654
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.2e-13 Score=120.07 Aligned_cols=119 Identities=19% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCc--hhhhcccCCCcccCCccccccccC----Ccch-hhhhccC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNG--YEWDIGHFHGARRPDVDCFRSTSF----GLSQ-REAFASD 76 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~--~E~~~GhipGAi~i~~~~~~~~~~----~~~~-~~~~~~~ 76 (247)
.-++|+++.+.|..... .-.++.+++.+.. .+|..||||||++++++.+.+-+. ..+. +.+....
T Consensus 11 ~lVs~~wl~~~l~~~~~--------~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 11 FLVSPDWLAENLDDPAV--------VIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred eEEcHHHHHhhcccccc--------ccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 34788888888875210 0146777777766 789999999999999988765432 2221 2222222
Q ss_pred CccCCCCCCceEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHHHHHCcCCce
Q 025834 77 PLADLDKEKTDILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131 (247)
Q Consensus 77 ~l~~l~k~~~~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~~ 131 (247)
...++..+. +||+|..+|. .+.++++.|+-+|+++|++|+||+.+|..+++|++
T Consensus 83 ~~~GI~~d~-tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~ 137 (285)
T COG2897 83 GELGIRNDD-TVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLE 137 (285)
T ss_pred HHcCCCCCC-EEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCcc
Confidence 233466665 6999997654 58899999999999999999999999999998754
No 55
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=8.1e-11 Score=106.04 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
.+|+|+.++.+|+..-...+ ...+|||+|-+|||..|||+||+|+.........+... .... ...
T Consensus 156 k~Is~etl~~ll~~~~~~~~-------~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~-------~~~~-~~~ 220 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFF-------DKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLK-------DGVP-SGS 220 (325)
T ss_pred cccCHHHHHHHHHhccccce-------eeEEEEEeCCcccccCcccccceecccHhhhhhhhccc-------cccc-ccc
Confidence 67999999999986322211 23789999999999999999999998875532221111 0010 001
Q ss_pred CCceEEEEeCC-CchHHHHHHHHHH------------cCCCcEEEccchHHHHHHCcC
Q 025834 84 EKTDILMYCTG-GIRCDVYSTILRQ------------RGFHNLYTLKGGVSHYLENEG 128 (247)
Q Consensus 84 ~~~~Iv~YCtg-G~R~e~aa~~L~~------------~Gf~nV~~L~GGi~~w~~~g~ 128 (247)
....+|+||+. ..|..++|..|++ .-|.++|+|+||+.+|.....
T Consensus 221 ~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 221 KRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP 278 (325)
T ss_pred CceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence 12358999995 5789999999984 347789999999999987654
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.10 E-value=1.1e-10 Score=111.92 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=61.4
Q ss_pred CCeEEEEcCCchhhhcccCCC----cccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHH
Q 025834 31 RDFILLDVRNGYEWDIGHFHG----ARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILR 106 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipG----Ai~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~ 106 (247)
++.++||||++.||+.||||| |+|+|...+.+ . +..+++++ +||+||.+|.||..++..|+
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~--------~------~~~l~~~~-~iivyC~~G~rS~~aa~~L~ 470 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLST--------Q------FGDLDQSK-TYLLYCDRGVMSRLQALYLR 470 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHH--------H------HhhcCCCC-eEEEECCCCHHHHHHHHHHH
Confidence 578999999999999999999 99999876632 1 12245554 79999999999999999999
Q ss_pred HcCCCcEEEccc
Q 025834 107 QRGFHNLYTLKG 118 (247)
Q Consensus 107 ~~Gf~nV~~L~G 118 (247)
+.||+||+++.+
T Consensus 471 ~~G~~nv~~y~~ 482 (482)
T PRK01269 471 EQGFSNVKVYRP 482 (482)
T ss_pred HcCCccEEecCC
Confidence 999999997753
No 57
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.95 E-value=1.4e-09 Score=98.65 Aligned_cols=104 Identities=24% Similarity=0.383 Sum_probs=79.8
Q ss_pred CCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCC
Q 025834 5 PLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKE 84 (247)
Q Consensus 5 ~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~ 84 (247)
+++..+|+.++++ .+..++||||++-||++-|+|.|+|||...++.... +.....++..
T Consensus 318 Rvsv~d~k~il~~------------~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~---------~~~~~~~~~~ 376 (427)
T KOG2017|consen 318 RVSVTDYKRILDS------------GAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG---------KKLQGDLNTE 376 (427)
T ss_pred cccHHHHHHHHhc------------CCCeEEEeccCcceEEEEecccccccchhhhhhhhh---------hhhccccccc
Confidence 4566666666665 478999999999999999999999999988764321 1112223333
Q ss_pred CceEEEEeCCCchHHHHHHHHHHcCC-CcEEEccchHHHHHHCcCC
Q 025834 85 KTDILMYCTGGIRCDVYSTILRQRGF-HNLYTLKGGVSHYLENEGP 129 (247)
Q Consensus 85 ~~~Iv~YCtgG~R~e~aa~~L~~~Gf-~nV~~L~GGi~~w~~~g~~ 129 (247)
.++|++.|..|+.|.+|.++|++..+ -.|.-+-||+.+|..+..+
T Consensus 377 ~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~ 422 (427)
T KOG2017|consen 377 SKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDP 422 (427)
T ss_pred CCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCc
Confidence 35799999999999999999997654 4677889999999987554
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.73 E-value=4.3e-08 Score=87.01 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcC---------CchhhhcccCCCcccCCcccccccc----CCcch-
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVR---------NGYEWDIGHFHGARRPDVDCFRSTS----FGLSQ- 69 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvR---------n~~E~~~GhipGAi~i~~~~~~~~~----~~~~~- 69 (247)
.-+++..+++.+.+ ..++|||.- ...||..-|||||++++.+...... +..+.
T Consensus 5 ~iv~~~~v~~~~~~-------------~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~ 71 (286)
T KOG1529|consen 5 SIVSVKWVMENLGN-------------HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTA 71 (286)
T ss_pred cccChHHHHHhCcC-------------CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccH
Confidence 45677777777765 678999973 3457888999999999988664311 11111
Q ss_pred hhhhccCCccCCCCCCceEEEEeC--CCch-HHHHHHHHHHcCCCcEEEccchHHHHHHCcCCc
Q 025834 70 REAFASDPLADLDKEKTDILMYCT--GGIR-CDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 130 (247)
Q Consensus 70 ~~~~~~~~l~~l~k~~~~Iv~YCt--gG~R-~e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g~~~ 130 (247)
+.+.......+++.++ .+|+|.. +|.. +.+++|.++-.|+++|+.|+||+.+|++.++++
T Consensus 72 e~Fa~y~~~lGi~n~d-~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~ 134 (286)
T KOG1529|consen 72 EHFAEYASRLGVDNGD-HVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPV 134 (286)
T ss_pred HHHHHHHHhcCCCCCC-eEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcc
Confidence 1111112233466665 5999998 6764 778999999999999999999999999988764
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.31 E-value=1.1e-06 Score=79.01 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDK 83 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k 83 (247)
++|+++.++..|+..-.... .+.+|||.|=+|||..|||-+|+||....-- ...+.... +..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f-------~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l--------~~~F~hkp---lTh 303 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDF-------LKCIIIDCRFEYEYRGGHIINAVNISSTKKL--------GLLFRHKP---LTH 303 (427)
T ss_pred hhcCHHHHHHHHhchhhhhh-------hceeEEeecceeeecCceeeeeeecchHHHH--------HHHHHhcc---ccC
Confidence 57888888888875322111 3478999999999999999999999865311 01111111 111
Q ss_pred CCceEEEEeC-CCchHHHHHHHHHHc------------CCCcEEEccchHHHHHHCc
Q 025834 84 EKTDILMYCT-GGIRCDVYSTILRQR------------GFHNLYTLKGGVSHYLENE 127 (247)
Q Consensus 84 ~~~~Iv~YCt-gG~R~e~aa~~L~~~------------Gf~nV~~L~GGi~~w~~~g 127 (247)
..-+|+.|. +.+|+..+|..|+.+ -|.+||+|+||+..+....
T Consensus 304 -p~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~ 359 (427)
T COG5105 304 -PRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNY 359 (427)
T ss_pred -ceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcC
Confidence 124889998 578999999999764 2678999999998876554
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.29 E-value=1.2e-06 Score=77.83 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCchhh-----------hcccCCCcccCCccccccccCCcc-hhhhhccCCccCCCCCCceEEEEeCCCch
Q 025834 30 NRDFILLDVRNGYEW-----------DIGHFHGARRPDVDCFRSTSFGLS-QREAFASDPLADLDKEKTDILMYCTGGIR 97 (247)
Q Consensus 30 ~~~~vvIDvRn~~E~-----------~~GhipGAi~i~~~~~~~~~~~~~-~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R 97 (247)
..++.+||.|...+| ..||||||+|+|...+-....+.+ ++++........+..+ +|||+-|..|+.
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~-~p~~~sC~~Gis 248 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLS-KPVIVSCGTGIS 248 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccC-CCEEEeeccchh
Confidence 467999999988887 349999999999987643222222 2333222222233333 589999999999
Q ss_pred HHHHHHHHHHcCCCcEEEccchHHHHHH
Q 025834 98 CDVYSTILRQRGFHNLYTLKGGVSHYLE 125 (247)
Q Consensus 98 ~e~aa~~L~~~Gf~nV~~L~GGi~~w~~ 125 (247)
+...+..|...| .+|.+++|++..|..
T Consensus 249 a~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 249 ASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 998999999999 789999999999986
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.46 E-value=0.012 Score=52.86 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=56.3
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCcccccccc-------C-Ccchhhhh---------ccCCcc---CCCCCCceEEE
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTS-------F-GLSQREAF---------ASDPLA---DLDKEKTDILM 90 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~-------~-~~~~~~~~---------~~~~l~---~l~k~~~~Iv~ 90 (247)
.++.+||||.+-||..|+.|+++|+|.-+-.+.. . ........ ....+. ..- ...|+-+
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~-e~~~~Gi 92 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ-EENPVGI 92 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhCCcce
Confidence 5788999999999999999999999975422100 0 00000000 000000 000 1235767
Q ss_pred EeC-CCchHHHHHHHH-HHcCCCcEEEccchHHHHH
Q 025834 91 YCT-GGIRCDVYSTIL-RQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 91 YCt-gG~R~e~aa~~L-~~~Gf~nV~~L~GGi~~w~ 124 (247)
+|. ||.|+...+.|| ...|++ +--+.||..++.
T Consensus 93 ~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 93 LCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred eeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 776 778999999999 667775 555668877654
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.47 E-value=0.08 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.1
Q ss_pred ceEEEEeCCCchHHHHHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILR 106 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~ 106 (247)
+||++||+.|.|+..+++++.
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHH
Confidence 489999999999887766543
No 63
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=91.55 E-value=0.04 Score=53.75 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCccccccccCCcchhhhhccCCccCCCCCCceEEEEeCCCchHHHHHHHHHHcCC
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGF 110 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~~~~~~~~~~~~~~~l~~l~k~~~~Iv~YCtgG~R~e~aa~~L~~~Gf 110 (247)
....|+|.|+..||..+||++++|+|++.- +.. -++...-....-... +.++++..+..-+......+..+-+
T Consensus 633 ~~l~v~d~r~~~ef~r~~~s~s~nip~~~~-ea~-----l~~~~~l~~~~~~~~-~~~v~~~~~~K~~~e~~~~~~~mk~ 705 (725)
T KOG1093|consen 633 KMLYVLDTRQESEFQREHFSDSINIPFNNH-EAD-----LDWLRFLPGIVCSEG-KKCVVVGKNDKHAAERLTELYVMKV 705 (725)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCccch-HHH-----HHHhhcchHhHHhhC-CeEEEeccchHHHHHHhhHHHHhcc
Confidence 567899999999999999999999998721 100 001000000001122 3477776665555555555655558
Q ss_pred CcEEEccchHHHHH
Q 025834 111 HNLYTLKGGVSHYL 124 (247)
Q Consensus 111 ~nV~~L~GGi~~w~ 124 (247)
..+..|++|+.++.
T Consensus 706 p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 706 PRICILHDGFNNID 719 (725)
T ss_pred cHHHHHHHHHhhcC
Confidence 88889999998554
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=88.63 E-value=0.45 Score=36.85 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=15.0
Q ss_pred ceEEEEeCCCchHHHHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTIL 105 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L 105 (247)
+||++||..|.|+..++.+-
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHHH
Confidence 48999999999997655543
No 65
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=88.03 E-value=0.4 Score=42.94 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccc--ccccc-CCcchhhhhccCCccC
Q 025834 4 IPLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDC--FRSTS-FGLSQREAFASDPLAD 80 (247)
Q Consensus 4 ~~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~--~~~~~-~~~~~~~~~~~~~l~~ 80 (247)
...+.+++++.+.. .+++++|.|+ +..||.+|+++-..- ++... .......+........
T Consensus 4 ~~~s~~wlnr~l~~-------------~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~ 66 (343)
T KOG1717|consen 4 ISKSVAWLNRQLEL-------------GNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDK 66 (343)
T ss_pred HHHHHHHHHhhccc-------------CceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccc
Confidence 34567778887775 6799999999 677899998765432 11110 0000000000000011
Q ss_pred CCCC---CceEEEEeCCCch------HHH-HHHH---HHHcCCCcEEEccchHHHHHHCc
Q 025834 81 LDKE---KTDILMYCTGGIR------CDV-YSTI---LRQRGFHNLYTLKGGVSHYLENE 127 (247)
Q Consensus 81 l~k~---~~~Iv~YCtgG~R------~e~-aa~~---L~~~Gf~nV~~L~GGi~~w~~~g 127 (247)
..++ ..++|.|..+... ++. .... ++..|.. ++.|.||+..+..+.
T Consensus 67 ~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~ 125 (343)
T KOG1717|consen 67 RFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEA 125 (343)
T ss_pred cccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhh
Confidence 1111 1368999876221 111 1112 2345764 999999999987654
No 66
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=81.89 E-value=0.47 Score=35.79 Aligned_cols=35 Identities=29% Similarity=0.777 Sum_probs=15.3
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhccC
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLR 207 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~~ 207 (247)
-..|-.||+||..+ |. ..+-.+||.+|+.|...|.
T Consensus 14 e~~CalCG~tWg~~-y~---Ev~G~rLfFCCd~ca~EF~ 48 (105)
T PF11494_consen 14 EMGCALCGATWGDY-YE---EVDGERLFFCCDDCAKEFK 48 (105)
T ss_dssp GGS-SS---S---S-S----B-TT--BSSS--SSSS-TT
T ss_pred cccccccCCcHHHH-HH---hhcCCEEEEEcHHHHHHHH
Confidence 45799999999865 33 3467789999999987664
No 67
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.68 E-value=1.1 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.491 Sum_probs=21.4
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhccCCCC
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLRGCC 210 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~~~~c 210 (247)
-.+|..||++.... .-+++|+.|.+.++.-|
T Consensus 5 ~~~C~~Cg~~~~~~-----------dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDG-----------DDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCC-----------CCEEECCCCCCcccHHH
Confidence 45788898887321 12788999988876443
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=77.70 E-value=0.34 Score=44.28 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=34.2
Q ss_pred CHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCCCcccCCccccccc
Q 025834 7 APSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRST 63 (247)
Q Consensus 7 sp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~~ 63 (247)
+|+++.+.+.+ ...++|+|....+..+||+|++++|...|..+
T Consensus 17 ~~~~~~~~l~~--------------~~~~~d~rg~i~~a~egIngtis~~~~~~~~~ 59 (314)
T PRK00142 17 DPEAFRDEHLA--------------LCKSLGLKGRILVAEEGINGTVSGTIEQTEAY 59 (314)
T ss_pred CHHHHHHHHHH--------------HHHHcCCeeEEEEcCCCceEEEEecHHHHHHH
Confidence 46667766653 35689999999999999999999998766543
No 69
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=73.51 E-value=5.3 Score=38.41 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCeEEEEcCCchhhhcccCCCcccCCcccccc
Q 025834 31 RDFILLDVRNGYEWDIGHFHGARRPDVDCFRS 62 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~GhipGAi~i~~~~~~~ 62 (247)
-+..|||.|+..+|..||+-.|.+++-..+-+
T Consensus 325 VrFFiVDcRpaeqynaGHlstaFhlDc~lmlq 356 (669)
T KOG3636|consen 325 VRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQ 356 (669)
T ss_pred eEEEEEeccchhhcccccchhhhcccHHHHhc
Confidence 35789999999999999999999998765543
No 70
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=69.95 E-value=4.3 Score=27.96 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=35.5
Q ss_pred ccccccCCCcc-cccccccCCCCCCC-ceEEechhhhhccCCCCCcccc
Q 025834 169 FATCYICSSQV-RELRHRNCANLDCN-LLFLCCADCVKNLRGCCCLNCT 215 (247)
Q Consensus 169 ~~~C~~C~~~~-~~~~~~nc~~~~C~-~~~~~c~~c~~~~~~~c~~~c~ 215 (247)
...|..||... ...++..-.-+.|. ..+.-|..|+....-+=|+.|.
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcC
Confidence 56899999887 33345544446798 8889999999888777788875
No 71
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=69.10 E-value=3.5 Score=32.40 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=30.2
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----CCCcEEEccchHHHH
Q 025834 88 ILMYCTGGI-RCDVYSTILRQR----GFHNLYTLKGGVSHY 123 (247)
Q Consensus 88 Iv~YCtgG~-R~e~aa~~L~~~----Gf~nV~~L~GGi~~w 123 (247)
|++.|++.+ ||..|.++|+++ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 789999854 899999998887 667889999998877
No 72
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=69.02 E-value=5.8 Score=27.30 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=33.8
Q ss_pred ccccccCCCcccccc-c--ccCCCCCCCce-EEechhhhhccCCCCCcccc
Q 025834 169 FATCYICSSQVRELR-H--RNCANLDCNLL-FLCCADCVKNLRGCCCLNCT 215 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~-~--~nc~~~~C~~~-~~~c~~c~~~~~~~c~~~c~ 215 (247)
.-.|..|+.+..... . -.| +.|... +.-|+.|++....+=|+.|.
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~C--PnCG~~~I~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLC--PNCGEVIIYRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred CccccCCCCcccCCCccCEeeC--CCCCCeeEeechhHHhcCCceECCCCC
Confidence 447999998876422 2 356 578877 88999999988888788875
No 73
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=66.00 E-value=4.7 Score=31.18 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=16.7
Q ss_pred ceEEEEeCCCc-hHHH-HHHHH-HHcCC
Q 025834 86 TDILMYCTGGI-RCDV-YSTIL-RQRGF 110 (247)
Q Consensus 86 ~~Iv~YCtgG~-R~e~-aa~~L-~~~Gf 110 (247)
++|+++|..|. |+.. ++.+| ...|+
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 47999999887 7763 34444 44443
No 74
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=62.53 E-value=2.4 Score=24.70 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.7
Q ss_pred cccccccCCCCC
Q 025834 213 NCTTAPQRRPVL 224 (247)
Q Consensus 213 ~c~~~~~~~~~~ 224 (247)
+|+.+||+|++.
T Consensus 1 ECr~hprNrYV~ 12 (28)
T PF12368_consen 1 ECRVHPRNRYVK 12 (28)
T ss_pred CcccCcchhhHH
Confidence 599999999886
No 75
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=62.19 E-value=5.5 Score=32.04 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCcEEEccchHHHHHH--CcCC-------ceeecceeEEeeeee
Q 025834 98 CDVYSTILRQRGFHNLYTLKGGVSHYLE--NEGP-------VEWVGNLFVFDSRLS 144 (247)
Q Consensus 98 ~e~aa~~L~~~Gf~nV~~L~GGi~~w~~--~g~~-------~~~~G~~fvFD~R~~ 144 (247)
+..++.+|++.||+++... |+.-|.. +..| ..+.|+-||||--..
T Consensus 11 ~~~v~~~lk~~g~~~~k~~--~l~~W~~~~~~~p~NH~vv~~k~~g~eyV~D~Ta~ 64 (135)
T PF15645_consen 11 MKEVADFLKDKGYEDIKYR--GLLIWENANDDSPTNHFVVVAKKNGKEYVFDPTAH 64 (135)
T ss_pred HHHHHHHHHhCCCCcceee--EEEEecCCCccCCcceEEEEEEECCEEEEEeCcHH
Confidence 4567788999999776543 3334632 2223 238999999996443
No 76
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=59.86 E-value=13 Score=30.12 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCCCCceEEEEeCC-----CchHHHHHHHHHHcCCCcEEEccchHHH
Q 025834 81 LDKEKTDILMYCTG-----GIRCDVYSTILRQRGFHNLYTLKGGVSH 122 (247)
Q Consensus 81 l~k~~~~Iv~YCtg-----G~R~e~aa~~L~~~Gf~nV~~L~GGi~~ 122 (247)
++++. .++++... |..-..++.+|+++|..+...||||-..
T Consensus 97 ~~~~g-~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 97 VTADG-KLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp E-TTS-EEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EeCCC-cEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 34555 46655544 4566778889999999999999998654
No 77
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=58.37 E-value=14 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCeEEEEcCCchhhhc---ccCC-CcccCCcccc
Q 025834 31 RDFILLDVRNGYEWDI---GHFH-GARRPDVDCF 60 (247)
Q Consensus 31 ~~~vvIDvRn~~E~~~---Ghip-GAi~i~~~~~ 60 (247)
.++.|||+|+..+|.. ||++ +. .+....|
T Consensus 150 ~~~~VvDlr~~a~hrGs~fG~~~~~~-qpsq~~f 182 (311)
T TIGR03167 150 AGAQVLDLEGLANHRGSSFGALGLGP-QPSQKRF 182 (311)
T ss_pred CCCeEEECCchHHhcCcccCCCCCCC-CCchHHH
Confidence 4678999999999987 8888 43 3333344
No 78
>PRK13530 arsenate reductase; Provisional
Probab=58.27 E-value=17 Score=28.66 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=25.4
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchH
Q 025834 86 TDILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGV 120 (247)
Q Consensus 86 ~~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi 120 (247)
++|++.|++.+ ||..|.++|+.++-.++.....|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 36999999764 788888888876434566666665
No 79
>PLN02727 NAD kinase
Probab=57.83 E-value=15 Score=38.53 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=16.8
Q ss_pred ceEEEEeCCCchH--HHHHHHHHH
Q 025834 86 TDILMYCTGGIRC--DVYSTILRQ 107 (247)
Q Consensus 86 ~~Iv~YCtgG~R~--e~aa~~L~~ 107 (247)
+||++||.+|.|+ ..+|.||..
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHHH
Confidence 5899999999953 456777764
No 80
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=57.78 E-value=16 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=25.8
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHH
Q 025834 87 DILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVS 121 (247)
Q Consensus 87 ~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~ 121 (247)
+|++.|++.. ||..|.++|++++-.++.....|+.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 5999998754 8999999998876445555555643
No 81
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=57.59 E-value=8.3 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.650 Sum_probs=24.4
Q ss_pred cccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 170 ATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 170 ~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
..|..|++++...|| .|. .|.. +-+|++|..+
T Consensus 5 ~~C~~C~~~i~g~ry-~C~--~C~d-~dlC~~Cf~~ 36 (44)
T smart00291 5 YSCDTCGKPIVGVRY-HCL--VCPD-YDLCQSCFAK 36 (44)
T ss_pred cCCCCCCCCCcCCEE-ECC--CCCC-ccchHHHHhC
Confidence 469999999887766 576 5754 7788888765
No 82
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=56.53 E-value=7 Score=28.88 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=8.9
Q ss_pred ccccCCCccc
Q 025834 171 TCYICSSQVR 180 (247)
Q Consensus 171 ~C~~C~~~~~ 180 (247)
.|++||.|+.
T Consensus 2 ~C~HCg~~~p 11 (88)
T PF12156_consen 2 KCYHCGLPVP 11 (88)
T ss_pred CCCCCCCCCC
Confidence 5999999995
No 83
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=56.12 E-value=11 Score=29.66 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=28.0
Q ss_pred EEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHHH
Q 025834 88 ILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHY 123 (247)
Q Consensus 88 Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~w 123 (247)
|++.|++.+ ||..|.++|+++.-.++.+..-|+..|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 688998754 899999999887644577777888766
No 84
>PRK10126 tyrosine phosphatase; Provisional
Probab=51.85 E-value=15 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=26.5
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHHH
Q 025834 87 DILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHY 123 (247)
Q Consensus 87 ~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~w 123 (247)
+|++.|+|.+ ||..|.++|++.+ ..+.+...|+..|
T Consensus 4 ~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 4 NILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGAL 40 (147)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCC
Confidence 5999999865 8999999998876 3355555666544
No 85
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=49.54 E-value=8.9 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.680 Sum_probs=20.2
Q ss_pred cccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 172 CYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 172 C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
|..||.+.....+. ....=+..+++|++|...+
T Consensus 1 Cd~CG~~I~~eP~~--~k~~~~~y~fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGEPIV--VKIGNKVYYFCCPTCLSQF 33 (37)
T ss_pred CCccCCcccCCEEE--EEECCeEEEEECHHHHHHH
Confidence 66788777643221 1113356788889998765
No 86
>PRK04023 DNA polymerase II large subunit; Validated
Probab=49.18 E-value=14 Score=38.92 Aligned_cols=44 Identities=20% Similarity=0.475 Sum_probs=34.3
Q ss_pred ccccccCCCcccccccccCCCCCCCc---eEEechhhhhccCCCCCcccccc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNL---LFLCCADCVKNLRGCCCLNCTTA 217 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~---~~~~c~~c~~~~~~~c~~~c~~~ 217 (247)
.-.|..||..+.. ..|. .|+. ....|+.|........|+.|...
T Consensus 626 ~RfCpsCG~~t~~---frCP--~CG~~Te~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 626 RRKCPSCGKETFY---RRCP--FCGTHTEPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred CccCCCCCCcCCc---ccCC--CCCCCCCcceeCccccCcCCCCcCCCCCCC
Confidence 3489999999743 4575 6775 58899999998877889999854
No 87
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=48.08 E-value=13 Score=23.66 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=22.2
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
.|..|++|....|| .|. .|.. +-.|.+|...
T Consensus 2 ~Cd~C~~~i~G~ry-~C~--~C~d-~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRY-KCL--VCPD-YDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeE-ECC--CCCC-ccchHHhhCc
Confidence 58999998776554 476 4664 7778888764
No 88
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=47.81 E-value=20 Score=28.71 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=26.3
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHHH
Q 025834 87 DILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHY 123 (247)
Q Consensus 87 ~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~w 123 (247)
+|++.|+|.+ ||..|.++|++.. .++.+...|+..|
T Consensus 4 ~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 4 SILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGL 40 (144)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCC
Confidence 5999999764 8999999998765 2355566666554
No 89
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=44.30 E-value=32 Score=27.56 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=28.6
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHHH
Q 025834 87 DILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSH 122 (247)
Q Consensus 87 ~Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~~ 122 (247)
+|++.|+|.+ ||..|-++|++..-.++.+...|..+
T Consensus 4 kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 4 KVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred eEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 5999999854 89999999987654678888887655
No 90
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=43.47 E-value=29 Score=27.29 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=27.5
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCC-cEEEccchHHHH
Q 025834 87 DILMYCTGGI-RCDVYSTILRQRGFH-NLYTLKGGVSHY 123 (247)
Q Consensus 87 ~Iv~YCtgG~-R~e~aa~~L~~~Gf~-nV~~L~GGi~~w 123 (247)
+|++.|++.+ ||..|.++|++..-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 5999999754 788888888876533 677777777543
No 91
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=42.65 E-value=15 Score=32.63 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCcEEEccchHHHHHHCc--CCc-------eeecceeEEeee
Q 025834 99 DVYSTILRQRGFHNLYTLKGGVSHYLENE--GPV-------EWVGNLFVFDSR 142 (247)
Q Consensus 99 e~aa~~L~~~Gf~nV~~L~GGi~~w~~~g--~~~-------~~~G~~fvFD~R 142 (247)
+-++.+|++.||.++..- ||.-|.... .|. ..+|+.||||--
T Consensus 153 ~pVa~fm~~~g~~diryR--giyiW~~a~de~P~nHf~VvgkK~~k~YvfDlt 203 (292)
T PRK15372 153 TPVSNFMNEKGFDNIRYR--GIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVS 203 (292)
T ss_pred HHHHHHHHhcCCceeeee--eEEEecCCcccCccceeEEEeeccCcceEEEcc
Confidence 347889999999887754 777887643 343 268899999953
No 92
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=41.08 E-value=23 Score=32.73 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=24.9
Q ss_pred CCCHHHHHHHhhcCCchhhhhcccCCCCeEEEEcCCchhhhcccCC
Q 025834 5 PLAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFH 50 (247)
Q Consensus 5 ~Lsp~e~~~~l~~~~~~~l~~~~~~~~~~vvIDvRn~~E~~~Ghip 50 (247)
.++++++.+.++... ..-..+.++||||.+. |++.+||
T Consensus 278 ~i~~~~~~~~l~~~~-------~~~~~~~~ll~vr~~~-~~~~~~~ 315 (339)
T PRK07688 278 EYDLEELAELLRDRG-------LDVNVNPYLLSFSLEE-KRLVLFK 315 (339)
T ss_pred ccCHHHHHHHHHhcc-------cccCCCcEEEEEecCC-eEEEEEc
Confidence 467777777664210 0012578899999977 8888776
No 93
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=40.85 E-value=20 Score=23.21 Aligned_cols=32 Identities=19% Similarity=0.544 Sum_probs=22.5
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..||..++..||.|=... -+.+|+.|-.+.
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~----~~dLC~~CF~~G 33 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAK----KYDLCPSCYQEG 33 (45)
T ss_pred cccCCCCccCceEEEecCCC----ccccChHHHhCc
Confidence 49999999988776632222 477888887654
No 94
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=39.21 E-value=35 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.8
Q ss_pred EEEEeCCCc-hHHHHHHHHHHcCCCcEEEccchHH
Q 025834 88 ILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVS 121 (247)
Q Consensus 88 Iv~YCtgG~-R~e~aa~~L~~~Gf~nV~~L~GGi~ 121 (247)
|++.|++.. ||..|.++|+.+.-.++.....|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 688998754 7888888888764356666777763
No 95
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=38.96 E-value=17 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHcCCCcEEEccchHHHHH---HCcCCceeecceeEEeeeeec
Q 025834 97 RCDVYSTILRQRGFHNLYTLKGGVSHYL---ENEGPVEWVGNLFVFDSRLSL 145 (247)
Q Consensus 97 R~e~aa~~L~~~Gf~nV~~L~GGi~~w~---~~g~~~~~~G~~fvFD~R~~~ 145 (247)
-+...+++|..+||+.+|++ ++.--. ..--.+.-.|+.||.|.+..+
T Consensus 81 YA~Lta~lLl~~g~~~~yi~--~~~~~~~~~Haa~aV~ing~~yvlDq~~p~ 130 (153)
T PF04473_consen 81 YAILTAALLLNMGYSPVYIL--HIEFDNDPGHAAVAVKINGKYYVLDQHLPP 130 (153)
T ss_pred HHHHHHHHHHHCCCCceEEE--EEecCCCCCeEEEEEEECCEEEEEeCCCCC
Confidence 45667888999999988877 222111 111224589999999998764
No 96
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=38.26 E-value=50 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=17.4
Q ss_pred ceEEEEeCCCc-hHHH-HHHHH-HHcCC
Q 025834 86 TDILMYCTGGI-RCDV-YSTIL-RQRGF 110 (247)
Q Consensus 86 ~~Iv~YCtgG~-R~e~-aa~~L-~~~Gf 110 (247)
++|++.|..|. |+.. +++|| ...|+
T Consensus 79 ~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 79 GKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred CeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 47999999986 7653 45554 45665
No 97
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=35.91 E-value=14 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=11.1
Q ss_pred echhhhhccCCCCCcccccc
Q 025834 198 CCADCVKNLRGCCCLNCTTA 217 (247)
Q Consensus 198 ~c~~c~~~~~~~c~~~c~~~ 217 (247)
.|..|...+ +||.+|+..
T Consensus 11 ~C~~C~~~~--YCs~~Cq~~ 28 (37)
T PF01753_consen 11 RCSRCKSVY--YCSEECQRA 28 (37)
T ss_dssp EETTTSSSE--ESSHHHHHH
T ss_pred cCCCCCCEE--ecCHHHHHH
Confidence 566664433 677777754
No 98
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=35.75 E-value=23 Score=23.17 Aligned_cols=32 Identities=22% Similarity=0.690 Sum_probs=22.4
Q ss_pred ccccCCC-cccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSS-QVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~-~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..|.+ |....|+ .|. .|.. +-.|..|....
T Consensus 2 ~C~~C~~~~i~g~R~-~C~--~C~d-ydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRF-PCQ--VCRD-YSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeE-ECC--CCCC-cCchHHHHhCC
Confidence 5889998 8876654 576 6654 77788886643
No 99
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=35.66 E-value=25 Score=22.44 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=21.6
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..|+++....| ..|. .|.. +-+|.+|..+.
T Consensus 2 ~C~~C~~~i~g~r-~~C~--~C~d-~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIVGVR-YHCL--VCED-FDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCcCCE-EECC--CCCC-CcCHHHHHCcC
Confidence 4889999877644 3465 5653 77788886643
No 100
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=33.84 E-value=14 Score=38.25 Aligned_cols=44 Identities=20% Similarity=0.551 Sum_probs=0.0
Q ss_pred ccccccCCCcccccccccCCCCCCCce---EEechhhhhccCCCCCcccccc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLL---FLCCADCVKNLRGCCCLNCTTA 217 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~---~~~c~~c~~~~~~~c~~~c~~~ 217 (247)
.-+|..||..+- +..|. .|... +..|+.|........|+.|...
T Consensus 655 ~r~Cp~Cg~~t~---~~~Cp--~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETF---YNRCP--ECGSHTEPVYVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp ----------------------------------------------------
T ss_pred cccCcccCCcch---hhcCc--ccCCccccceeccccccccCcccccccccc
Confidence 467999999874 34574 67665 8899999999888899999864
No 101
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.36 E-value=46 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.6
Q ss_pred ceEEEEeCCCchHHHHHHH
Q 025834 86 TDILMYCTGGIRCDVYSTI 104 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~ 104 (247)
.||+-||.+|.||..+..+
T Consensus 88 gPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 88 GPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred CCEEeeecCCchHHHHHHH
Confidence 3899999999999865544
No 102
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=33.29 E-value=27 Score=21.92 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=17.4
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
.|..||++.++.+..- +.+ .-..+|++|...
T Consensus 3 ~CSFCgr~~~~v~~li-~g~---~~~~IC~~Cv~~ 33 (41)
T PF06689_consen 3 RCSFCGRPESEVGRLI-SGP---NGAYICDECVEQ 33 (41)
T ss_dssp B-TTT--BTTTSSSEE-EES----SEEEEHHHHHH
T ss_pred CccCCCCCHHHHhcee-cCC---CCcEECHHHHHH
Confidence 6999999987643221 222 118899999764
No 103
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.13 E-value=67 Score=25.13 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=27.7
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 122 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~~ 122 (247)
+++++...|| -+..++..|...|+++|++..--...
T Consensus 13 ~~vlviGaGg-~ar~v~~~L~~~g~~~i~i~nRt~~r 48 (135)
T PF01488_consen 13 KRVLVIGAGG-AARAVAAALAALGAKEITIVNRTPER 48 (135)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred CEEEEECCHH-HHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 4689998765 46668888899999999988765544
No 104
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.04 E-value=44 Score=33.06 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=30.6
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 121 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~ 121 (247)
.|||+|-+.-.-++.+|..|.+.|| +++.|.||-.
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCcc
Confidence 4799999887779999999999998 5999999864
No 105
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=30.72 E-value=29 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.4
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
+-.|..|+.|-..+ ..- =+.++|.|.+|.+..
T Consensus 98 yV~C~~C~~pdT~l--~k~----~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 98 YVICSECGLPDTRL--VKE----DRVLMLRCDACGAHR 129 (201)
T ss_pred eEECCCCCCCCcEE--EEc----CCeEEEEcccCCCCc
Confidence 67899999998765 321 267799999998754
No 106
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=30.50 E-value=33 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=23.8
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
+-.|..|+.|-..+ +. .=+.+++.|.+|.+.
T Consensus 102 yVlC~~C~spdT~l--~k----~~r~~~l~C~ACGa~ 132 (138)
T PRK03988 102 YVICPECGSPDTKL--IK----EGRIWVLKCEACGAE 132 (138)
T ss_pred cEECCCCCCCCcEE--EE----cCCeEEEEcccCCCC
Confidence 67899999998754 33 234679999999865
No 107
>KOG3134 consensus Predicted membrane protein [Function unknown]
Probab=30.39 E-value=22 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=24.3
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..||.+.+.+ |..=+ .-|...-.|+.|++..
T Consensus 2 ~CVeCg~~vksL-y~~Ys--~g~irlt~C~nC~e~v 34 (225)
T KOG3134|consen 2 RCVECGSEVKSL-YTQYS--PGNIRLTKCPNCQEVV 34 (225)
T ss_pred cccccCchHHHH-HHhcC--CCcEEEeeCCchhhHH
Confidence 599999999874 44333 3388899999998754
No 108
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=30.13 E-value=33 Score=26.52 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=22.3
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhh
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVK 204 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~ 204 (247)
+-.|..|+.|-..+ ..= =+.+++.|.+|.+
T Consensus 80 yVlC~~C~spdT~l--~k~----~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTEL--IKE----NRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEE--EEe----CCeEEEEccccCC
Confidence 57899999997654 321 2567999999975
No 109
>PHA02776 E7 protein; Provisional
Probab=29.72 E-value=27 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=26.4
Q ss_pred CCccccccCCCcccccccccCCCC--------CCCceEEechhhhhc
Q 025834 167 NPFATCYICSSQVRELRHRNCANL--------DCNLLFLCCADCVKN 205 (247)
Q Consensus 167 ~~~~~C~~C~~~~~~~~~~nc~~~--------~C~~~~~~c~~c~~~ 205 (247)
.++..|..|++...- ...|... ....|.|+|+.|+.+
T Consensus 56 ~Ivt~C~~C~~~lRL--~V~st~~~IR~lqqLLl~~L~ivCp~Ca~~ 100 (101)
T PHA02776 56 QIVTCCCGCDNNVRL--VVECTEPDIQELHNLLLGSLNIVCPICAPK 100 (101)
T ss_pred EEEeECCCCCCeEEE--EEEcChhhHHHHHHHhcCCeEEECCCCCCC
Confidence 457889999998742 3444432 357889999999865
No 110
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=29.63 E-value=25 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=11.7
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
+.+|..|+.... |..- -+++|++|...
T Consensus 2 ~p~Cp~C~se~~---y~D~-------~~~vCp~C~~e 28 (30)
T PF08274_consen 2 LPKCPLCGSEYT---YEDG-------ELLVCPECGHE 28 (30)
T ss_dssp S---TTT--------EE-S-------SSEEETTTTEE
T ss_pred CCCCCCCCCcce---eccC-------CEEeCCccccc
Confidence 467999998764 3211 26888888653
No 111
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.40 E-value=29 Score=23.85 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=9.9
Q ss_pred ccccccCCCcccc
Q 025834 169 FATCYICSSQVRE 181 (247)
Q Consensus 169 ~~~C~~C~~~~~~ 181 (247)
-.+|..||+|...
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 3579999998863
No 112
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=29.05 E-value=42 Score=21.61 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=9.3
Q ss_pred cccCCCCCCCceEE
Q 025834 184 HRNCANLDCNLLFL 197 (247)
Q Consensus 184 ~~nc~~~~C~~~~~ 197 (247)
|..|.|++|..-|+
T Consensus 25 Y~qC~N~~Cg~tfv 38 (47)
T PF04606_consen 25 YCQCTNPECGHTFV 38 (47)
T ss_pred EEEECCCcCCCEEE
Confidence 56677777766554
No 113
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=28.46 E-value=35 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=23.2
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
+-.|..|+.|-..+ .. .=+..++.|.+|.+.
T Consensus 97 yVlC~~C~sPdT~l--~k----~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 97 YVICRECNRPDTRI--IK----EGRVSLLKCEACGAK 127 (133)
T ss_pred eEECCCCCCCCcEE--EE----eCCeEEEecccCCCC
Confidence 57899999998764 32 224568999999865
No 114
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=28.34 E-value=42 Score=27.66 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=22.0
Q ss_pred ccccccCCCcccccccccCCCCCCC---------ceEEechhhhh
Q 025834 169 FATCYICSSQVRELRHRNCANLDCN---------LLFLCCADCVK 204 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~---------~~~~~c~~c~~ 204 (247)
-+.|..|+.|.+.....++- ..|| ..-|.|..|-.
T Consensus 20 ~G~CaiC~~~l~~~~~~~~v-DHDH~l~g~~TG~VRGLLC~~CN~ 63 (157)
T PHA02565 20 NGICPLCKRELDGDVSKNHL-DHDHELNGPNAGRVRGLLCNLCNA 63 (157)
T ss_pred CCcCCCCCCccCCCcccccc-CCCCCCCCcccccccccCchhhhh
Confidence 57899999986532123333 4455 46777777765
No 115
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=28.06 E-value=54 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=12.3
Q ss_pred ccccCCCCCCCceEEech
Q 025834 183 RHRNCANLDCNLLFLCCA 200 (247)
Q Consensus 183 ~~~nc~~~~C~~~~~~c~ 200 (247)
+|..|.|.+|..-|..=+
T Consensus 26 ~Y~qC~N~eCg~tF~t~e 43 (72)
T PRK09678 26 RYHQCQNVNCSATFITYE 43 (72)
T ss_pred eeeecCCCCCCCEEEEEE
Confidence 467788887877766543
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=27.06 E-value=90 Score=22.98 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=27.9
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEccchH
Q 025834 87 DILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGV 120 (247)
Q Consensus 87 ~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi 120 (247)
++++||..-..++.+...|.+.++ .+..+.|++
T Consensus 30 ~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 30 KVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 699999988889999999988776 588888875
No 117
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=26.60 E-value=46 Score=21.58 Aligned_cols=33 Identities=27% Similarity=0.652 Sum_probs=22.2
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..|.++...-....|. .|.. +-+|.+|....
T Consensus 2 ~Cd~C~~~~~~g~r~~C~--~C~d-~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDITGTIRIKCA--ECPD-FDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCCCCcEEECC--CCCC-cchhHHhhhCc
Confidence 488899877652235576 6664 77788887643
No 118
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=26.60 E-value=39 Score=21.99 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=20.6
Q ss_pred ccccCC-CcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICS-SQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~-~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..|+ .|....|+ .|. .|-. +-.|.+|....
T Consensus 2 ~C~~C~~~~i~g~R~-~C~--~C~d-~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRY-KCL--ICYD-YDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeE-EeC--CCCC-CccchhHHhCC
Confidence 588899 67765443 365 5543 77788886643
No 119
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.55 E-value=46 Score=21.18 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=13.5
Q ss_pred ceEEechhhhhccCCCC
Q 025834 194 LLFLCCADCVKNLRGCC 210 (247)
Q Consensus 194 ~~~~~c~~c~~~~~~~c 210 (247)
...|+|+.|...++..|
T Consensus 12 ~~~i~C~~C~~~~H~~C 28 (51)
T PF00628_consen 12 GDMIQCDSCNRWYHQEC 28 (51)
T ss_dssp SSEEEBSTTSCEEETTT
T ss_pred CCeEEcCCCChhhCccc
Confidence 45899999998888654
No 120
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=26.19 E-value=24 Score=24.12 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.3
Q ss_pred ccCCCCCccccccccCCCCC
Q 025834 205 NLRGCCCLNCTTAPQRRPVL 224 (247)
Q Consensus 205 ~~~~~c~~~c~~~~~~~~~~ 224 (247)
.++-+||+-|+...-.|...
T Consensus 19 ~~rPFCS~RCk~iDLg~W~~ 38 (57)
T PF03884_consen 19 PFRPFCSERCKLIDLGRWAN 38 (57)
T ss_dssp S--SSSSHHHHHHHHS-SSS
T ss_pred CcCCcccHhhcccCHHHHhc
Confidence 45568999999776555444
No 121
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.13 E-value=1.2e+02 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHcCCCcEEE
Q 025834 86 TDILMYCTGGI---RCDVYSTILRQRGFHNLYT 115 (247)
Q Consensus 86 ~~Iv~YCtgG~---R~e~aa~~L~~~Gf~nV~~ 115 (247)
.+|++.|..|. ..-.++++|.+.|++ |.+
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 36999998765 467889999999996 554
No 122
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=25.72 E-value=45 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=13.8
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhh
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVK 204 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~ 204 (247)
-|..||.|+.. .+- + .=++.-++|++|..
T Consensus 2 fC~~CG~~l~~--~ip-~--gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLER--RIP-E--GDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EE--E---T--T-SS-EEEETTTTE
T ss_pred ccccccChhhh--hcC-C--CCCccceECCCCCC
Confidence 38899999853 121 1 22667888888854
No 123
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=25.66 E-value=48 Score=21.31 Aligned_cols=30 Identities=27% Similarity=0.803 Sum_probs=20.1
Q ss_pred ccccCC-CcccccccccCCCCCCCceEEechhhhh
Q 025834 171 TCYICS-SQVRELRHRNCANLDCNLLFLCCADCVK 204 (247)
Q Consensus 171 ~C~~C~-~~~~~~~~~nc~~~~C~~~~~~c~~c~~ 204 (247)
.|..|+ .|..-.|+ .|. .|.. +=.|+.|..
T Consensus 2 ~Cd~C~~~~i~G~Ry-kC~--~C~d-yDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRW-KCA--ECPN-YDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeE-ECC--CCCC-ccchHHHhC
Confidence 488898 56655453 476 4654 777888876
No 124
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=25.64 E-value=26 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=11.5
Q ss_pred ccCCCCCccccccccCC
Q 025834 205 NLRGCCCLNCTTAPQRR 221 (247)
Q Consensus 205 ~~~~~c~~~c~~~~~~~ 221 (247)
.++-+||+-|+...-.|
T Consensus 23 ~~rPFCS~RCk~IDLg~ 39 (62)
T PRK00418 23 PFRPFCSKRCQLIDLGE 39 (62)
T ss_pred CcCCcccHHHHhhhHHH
Confidence 45568999998764333
No 125
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=25.38 E-value=41 Score=20.74 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.1
Q ss_pred ceeecceeEEee
Q 025834 130 VEWVGNLFVFDS 141 (247)
Q Consensus 130 ~~~~G~~fvFD~ 141 (247)
..+.|+++|||.
T Consensus 10 IfY~G~V~Vfd~ 21 (36)
T PF06200_consen 10 IFYGGQVCVFDD 21 (36)
T ss_pred EEECCEEEEeCC
Confidence 458999999995
No 126
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=25.10 E-value=44 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=19.7
Q ss_pred ccccccCCCcccccccccCCCCCCCceE
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLF 196 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~ 196 (247)
+-+|..||.---. |...|.|..|...+
T Consensus 11 irkCp~CGt~NG~-R~~~CKN~~C~~~~ 37 (44)
T PF14952_consen 11 IRKCPKCGTYNGT-RGLSCKNKSCPQVF 37 (44)
T ss_pred cccCCcCcCccCc-ccccccCCccchhh
Confidence 6789999976643 55669998886543
No 127
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=25.01 E-value=53 Score=21.56 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=21.6
Q ss_pred ccccCCC-cccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSS-QVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~-~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..|++ |..-.||. |. .|.. +=+|.+|....
T Consensus 2 ~Cd~C~~~pi~g~Ryk-C~--~C~d-~DLC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYR-CL--KCFN-YDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEE-CC--CCCC-cCchHHHHhCC
Confidence 5888995 66655543 65 5654 77788887654
No 128
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.00 E-value=1.2e+02 Score=21.78 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=23.7
Q ss_pred ceEEEEeCCCchHHHHHHHHHHcCCCcEEEccchH
Q 025834 86 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGV 120 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi 120 (247)
.||++.- .... .....+|+..+.++|+++ ||.
T Consensus 51 ~PIll~~-~~l~-~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 51 APILLVN-NSLP-SSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred CeEEEEC-CCCC-HHHHHHHHHcCCCEEEEE-CCC
Confidence 4666665 4444 778889999999999998 654
No 129
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=24.67 E-value=42 Score=28.65 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=21.1
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhh
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVK 204 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~ 204 (247)
.|..||.|.+.+ |+.=. .=|...-.|+.|.+
T Consensus 2 iCIeCg~~v~~L-y~~Ys--~~~irLt~C~~C~~ 32 (208)
T PF04161_consen 2 ICIECGHPVKSL-YRQYS--PGNIRLTKCPNCGK 32 (208)
T ss_pred EeccCCCcchhh-hhccC--CCcEEEeeccccCC
Confidence 489999998753 33222 22677888888875
No 130
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=24.47 E-value=42 Score=21.46 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=20.0
Q ss_pred ccccccCCC-cccccccccCCCCCCCceEEechhhhhc
Q 025834 169 FATCYICSS-QVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 169 ~~~C~~C~~-~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
...|..|+. |....||. |. .|.. +=+|++|..+
T Consensus 4 ~~~C~~C~~~~i~g~Ry~-C~--~C~d-~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYH-CL--VCPD-YDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEE-ES--SSSS--EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEE-CC--CCCC-CchhhHHHhC
Confidence 347999998 76655543 65 4543 7788888765
No 131
>COG5254 ARV1 Predicted membrane protein [Function unknown]
Probab=23.61 E-value=33 Score=29.56 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=24.6
Q ss_pred ccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 171 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 171 ~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
.|..||.|.+.+ |.- +..=|.+.-.|+.|.++.
T Consensus 2 vCIeCg~~vdsL-yt~--ysts~iqls~Cp~C~~~~ 34 (239)
T COG5254 2 VCIECGSRVDSL-YTR--YSTSAIQLSRCPSCNRKM 34 (239)
T ss_pred eeeEcCCcccee-eee--ccCcceehhcCchHHHHH
Confidence 499999999874 332 234578888999998765
No 132
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=52 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=24.1
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhccCCCCCccccccccCCCC
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLRGCCCLNCTTAPQRRPV 223 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~~~~c~~~c~~~~~~~~~ 223 (247)
...|..||+|+.-. . ...|+-+||.-|+...-.|..
T Consensus 7 ~v~CP~Cgkpv~w~--~-----------------~s~frPFCSkRCklIDLg~Wa 42 (65)
T COG3024 7 TVPCPTCGKPVVWG--E-----------------ESPFRPFCSKRCKLIDLGEWA 42 (65)
T ss_pred cccCCCCCCccccc--c-----------------cCCcCcchhHhhhhcchhhhh
Confidence 45799999998631 1 235667899999876655543
No 133
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.25 E-value=1.3e+02 Score=22.84 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=17.0
Q ss_pred ceEEEEeCCCc-hHH-HHHHHHH-HcCC
Q 025834 86 TDILMYCTGGI-RCD-VYSTILR-QRGF 110 (247)
Q Consensus 86 ~~Iv~YCtgG~-R~e-~aa~~L~-~~Gf 110 (247)
.+|+++|..|. |+. .++++|. ..|+
T Consensus 74 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 74 GKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred ceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 47999999886 654 4555554 4565
No 134
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=22.86 E-value=51 Score=26.06 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=23.4
Q ss_pred ccccccCCCcccccccccCCCCCCCceEEechhhhhc
Q 025834 169 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 205 (247)
Q Consensus 169 ~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~ 205 (247)
+-.|..|+.|-..+ ..+ =+.+++.|.+|.+.
T Consensus 93 yVlC~~C~spdT~l-~k~-----~r~~~l~C~aCGa~ 123 (125)
T PF01873_consen 93 YVLCPECGSPDTEL-IKE-----GRLIFLKCKACGAS 123 (125)
T ss_dssp HSSCTSTSSSSEEE-EEE-----TTCCEEEETTTSCE
T ss_pred EEEcCCCCCCccEE-EEc-----CCEEEEEecccCCc
Confidence 56899999998754 222 35689999999764
No 135
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=22.65 E-value=76 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.665 Sum_probs=16.0
Q ss_pred ceEEEEeCCCc-hHH-HHHHHH-HHcCC
Q 025834 86 TDILMYCTGGI-RCD-VYSTIL-RQRGF 110 (247)
Q Consensus 86 ~~Iv~YCtgG~-R~e-~aa~~L-~~~Gf 110 (247)
++|++.|.+|+ |+. .+++|| ...|.
T Consensus 106 ~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 106 KKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred CeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 36999999987 544 444444 44343
No 136
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.23 E-value=1.3e+02 Score=22.34 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=26.0
Q ss_pred ceEEEEeCCCchHHHHHH----HHHHcCCCcEEEccchHHHHHH
Q 025834 86 TDILMYCTGGIRCDVYST----ILRQRGFHNLYTLKGGVSHYLE 125 (247)
Q Consensus 86 ~~Iv~YCtgG~R~e~aa~----~L~~~Gf~nV~~L~GGi~~w~~ 125 (247)
++|++.|.+|+.+..++. ++.+.|++ +.+-..++.....
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~~~ 46 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAAGE 46 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHHHh
Confidence 369999999987654444 44567885 5555666666543
No 137
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.63 E-value=95 Score=23.68 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=21.2
Q ss_pred cccccCCCcccccccccC----CCCCCCc-eEEechhh
Q 025834 170 ATCYICSSQVRELRHRNC----ANLDCNL-LFLCCADC 202 (247)
Q Consensus 170 ~~C~~C~~~~~~~~~~nc----~~~~C~~-~~~~c~~c 202 (247)
..||+|+..+... ...| .+..|+. ....|..|
T Consensus 8 ~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~C 44 (105)
T PF10497_consen 8 KTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGC 44 (105)
T ss_pred CCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhH
Confidence 4799999988753 5678 7778821 13355665
No 138
>cd07168 NR_DBD_DHR4_like DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4
Probab=21.61 E-value=57 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=20.3
Q ss_pred CccccccCCCcccccccccCCCCCCCceEEechhhhhcc
Q 025834 168 PFATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 206 (247)
Q Consensus 168 ~~~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~ 206 (247)
....|..|+.+...++|. ++.|.+|..=|
T Consensus 5 ~~~~C~VCg~~~~g~hyG----------v~sC~aCk~FF 33 (90)
T cd07168 5 SPKLCSICEDKATGLHYG----------IITCEGCKGFF 33 (90)
T ss_pred cCCCCcccCCcCcceEEC----------ceehhhhhHhh
Confidence 355799999987765443 67788886644
No 139
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=21.23 E-value=1.5e+02 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=21.9
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCC
Q 025834 88 ILMYCTGGIRCDVYSTILRQRGFH 111 (247)
Q Consensus 88 Iv~YCtgG~R~e~aa~~L~~~Gf~ 111 (247)
=|+||-+-..|++++..|+..|+.
T Consensus 320 giiyc~sq~d~ekva~alkn~gi~ 343 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNHGIH 343 (695)
T ss_pred ceEEEeccccHHHHHHHHHhcCcc
Confidence 589999989999999999999975
No 140
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=67 Score=32.80 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEechhhhhcc----------CCCCCccccccccC
Q 025834 195 LFLCCADCVKNL----------RGCCCLNCTTAPQR 220 (247)
Q Consensus 195 ~~~~c~~c~~~~----------~~~c~~~c~~~~~~ 220 (247)
-|..|++|...| ...||+.|..+.+.
T Consensus 150 ~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~~~l 185 (750)
T COG0068 150 DFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPHLFL 185 (750)
T ss_pred cCcCCHHHHHHhcCccccccccccccCcccCCCeEE
Confidence 378999999876 26799999865443
No 141
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.88 E-value=1.1e+02 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=29.8
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEccchHH
Q 025834 87 DILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 121 (247)
Q Consensus 87 ~Iv~YCtgG~R~e~aa~~L~~~Gf~nV~~L~GGi~ 121 (247)
++++||+.-..++.++..|...|++ +..+.|++.
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 5999999988899999999999985 888888863
No 142
>PLN03158 methionine aminopeptidase; Provisional
Probab=20.69 E-value=39 Score=31.98 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=19.6
Q ss_pred cccccCCCcccccccccCCCCCCCceEEechhhhhcc-----CCCCCccccc
Q 025834 170 ATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL-----RGCCCLNCTT 216 (247)
Q Consensus 170 ~~C~~C~~~~~~~~~~nc~~~~C~~~~~~c~~c~~~~-----~~~c~~~c~~ 216 (247)
..|..|+++. -|+|+.|.+.. ..+||.+|-.
T Consensus 10 ~~c~~c~~~a----------------~l~Cp~C~k~~~~~~~s~fCsq~CFk 45 (396)
T PLN03158 10 LACARCSKPA----------------HLQCPKCLELKLPREGASFCSQDCFK 45 (396)
T ss_pred ccccCCCCcc----------------cccCccchhcCCCCCCceeECHHHHH
Confidence 3488888764 25667776522 3468888864
No 143
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=20.61 E-value=61 Score=18.74 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=5.6
Q ss_pred cccCCCccc
Q 025834 172 CYICSSQVR 180 (247)
Q Consensus 172 C~~C~~~~~ 180 (247)
|..|+++..
T Consensus 2 C~~C~~~i~ 10 (39)
T smart00132 2 CAGCGKPIR 10 (39)
T ss_pred ccccCCccc
Confidence 666666654
No 144
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.60 E-value=57 Score=17.85 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=5.9
Q ss_pred cccCCCcccc
Q 025834 172 CYICSSQVRE 181 (247)
Q Consensus 172 C~~C~~~~~~ 181 (247)
|..||++.+.
T Consensus 2 Cp~CG~~~~~ 11 (23)
T PF13240_consen 2 CPNCGAEIED 11 (23)
T ss_pred CcccCCCCCC
Confidence 5666666643
No 145
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.32 E-value=1.3e+02 Score=22.82 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=24.6
Q ss_pred eEEEEeCCCchHHHHHHH----HHHcCCCcEEEccchHHHHH
Q 025834 87 DILMYCTGGIRCDVYSTI----LRQRGFHNLYTLKGGVSHYL 124 (247)
Q Consensus 87 ~Iv~YCtgG~R~e~aa~~----L~~~Gf~nV~~L~GGi~~w~ 124 (247)
+|++.|.+|..+..++.. +++.|++ +.+-..++....
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~~ 43 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEGE 43 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHHH
Confidence 599999999976555544 4567885 555555655543
Done!