BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025835
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 43 IAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQR 102
+ +DLS ES A +WAV LR GD +I++ V+ D A V M ESE+
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVD-----VIECDDPSARAVKDRM-ESEQ--- 485
Query: 103 KLEDDFDQFTTTKANDLAQPLVEAQIPFK-IHIVKDHDMKERLCLE-VERLGLSAVIMGS 160
LE ++ T L++ ++E ++ + IH H+ + L +E ++ + S V+MGS
Sbjct: 486 -LE-TLEKITKYILKLLSKTVLEVEVNIEVIH----HEKAKHLIIEMIDYIEPSLVVMGS 539
Query: 161 RGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
RG K LGS S+Y V+ PV+V R
Sbjct: 540 RGRSHLK---GVLLGSFSNYLVNKSSVPVMVAR 569
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 135 VKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194
+K D K+ +C EV+R+ +++GSRG G + K +G+VS +CV H CPV+ ++
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVSAFCVKHAECPVMTIKR 163
Query: 195 SDDKDAAD 202
+ D+ +D
Sbjct: 164 NADETPSD 171
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 69 VILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQI 128
+ LLH+ V+ G G + ++ + + +Q+ +E + T + P V ++
Sbjct: 38 ITLLHIV-APVVVGWPVGQLYANMTEWQKDNAQQVIEQAREALTNSLGES-KPPQVHTEL 95
Query: 129 PFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCP 188
F + D ++ L +++GS+G GA + LGS+S +HH CP
Sbjct: 96 VFSNVVPTLIDASQQAWL---------MVVGSQGMGAL---GRLLLGSISTALLHHARCP 143
Query: 189 VIVVRFSDDKDAADGDADAASKSDG 213
V ++ S + D DA DG
Sbjct: 144 VAIIH-SGNGATPDSDAPVLVGIDG 167
>sp|Q05FI1|RS7_CARRP 30S ribosomal protein S7 OS=Carsonella ruddii (strain PV) GN=rpsG
PE=3 SV=1
Length = 156
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 19 IVQPSSPRFPLSSPTTGGAHRKIGIAVDLSDESAFAVKWAVQN 61
I+ P F + GG+ KI I ++L F++KW V+N
Sbjct: 65 ILYNVQPNFEIKKKKIGGSFYKIPIKINLKRSLMFSMKWIVKN 107
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 156 VIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
V++G RG K ++ LGSVS Y +HH C V++V+
Sbjct: 119 VVLGRRGL---KGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|Q5WEY6|COAA_BACSK Pantothenate kinase OS=Bacillus clausii (strain KSM-K16) GN=coaA
PE=3 SV=1
Length = 316
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 83 ADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKE 142
A+W + +E+ ++ LE ++ + + ND+ PL E +H V+ HD
Sbjct: 19 AEWAQLNDGHSAPLTEKERKNLEGIYETISEAEVNDVYMPLSELLYKRMVHNVRLHDDLN 78
Query: 143 RLCLEVERLGLSAVIMGSRGFGAAKKSSKSRL 174
R L+ ER + VI G G A KS+ +RL
Sbjct: 79 RF-LKRERKRVPFVI-GIAGSVAVGKSTTARL 108
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 152 GLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
G+S +++GSRG K+ LGSVS CPV++VR
Sbjct: 110 GVSLIVVGSRGISGLKEM---MLGSVSHKVSQLSTCPVLIVR 148
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGD-AVILLHVRPTSVLYGADWGAIEVSLEMSES 97
R +D + S AV W + L D AV+L + P+S L E
Sbjct: 140 RTFLCGMDGNSYSEVAVDWLFETLLADNDEAVVLRVIDPSSKL-----------AEDLSD 188
Query: 98 EESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVI 157
E+S R L + K +D I ++ + K DM + + ++I
Sbjct: 189 EQSYRSLAEHIMAGILKKVDDDK----AVSIIVELVVGKPQDM---ILRTIHVYSPDSLI 241
Query: 158 MGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
+G+RG S GSVS +C+ PVIVVR
Sbjct: 242 VGTRGKALNSFQSLLSSGSVSKFCLQKSPIPVIVVR 277
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 39/174 (22%)
Query: 41 IGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSES--- 97
I + VD S ES AV+WA + + L+HV V+ + LE E
Sbjct: 10 ILVGVDSSAESDAAVRWAAREASLHDAPITLMHVIAPVVVSWPAGPYMATVLECQEENAR 69
Query: 98 ---EESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEV 148
E++Q+ + D + T + +A+ L++A K M
Sbjct: 70 HAIEQAQKVVADCLGETHGLTVQTEIRKESVARTLIDAS--------KSAQM-------- 113
Query: 149 ERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDDKDAAD 202
V++G+RG GA + LGS S +H+ PV+VV DD+ A D
Sbjct: 114 -------VVVGNRGMGAL---GRVLLGSTSTSLLHYASGPVVVV-HGDDQAAHD 156
>sp|P60004|USPA_PHOLL Universal stress protein A OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=uspA PE=3 SV=1
Length = 143
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 15/110 (13%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I +AVDLS ES V+ AV + +P +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILVAVDLSPESQVLVRKAV-SMAKPDNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKL-----EDDFD-QFTTTKANDLAQPLVEAQIPFKIHIV 135
M + SEE++ L + +D Q T + + DL Q LV+A + I +V
Sbjct: 58 MQQRISEETRSALKALSADSAYDIQETLSGSGDLGQVLVDAIKKYGIDMV 107
>sp|P39177|USPG_ECOLI Universal stress protein G OS=Escherichia coli (strain K12) GN=uspG
PE=1 SV=2
Length = 142
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 45 VDLSDESAFAVKWAVQNYLRPGDAVI-LLHVRPTSVLYGADWGAIEVS-LEMSESEESQR 102
++LSD+ AV+ A +L D VI LLHV P S A +V E E+Q
Sbjct: 14 MELSDK---AVRHA--EFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAQE 68
Query: 103 KLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRG 162
+L+ FT + ++ + F +++ + E LG V++GSR
Sbjct: 69 RLQTMVSHFTIDPSR------IKQHVRFG-------SVRDEVNELAEELGADVVVIGSRN 115
Query: 163 FGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
S LGS + + H PV+VVR
Sbjct: 116 ----PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 27/219 (12%)
Query: 33 TTGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSL 92
++G + I + +D S + AV+WA ++ + L+H V A W +EV L
Sbjct: 2 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV---ATW--LEVPL 56
Query: 93 E---MSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVE 149
+ ++ R L DD + + P V ++I + DM + L
Sbjct: 57 PPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKDAVL--- 113
Query: 150 RLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDDKDAADGDADAAS 209
+++G G G + LGSVS + H CPV+++ D+D+ A
Sbjct: 114 ------MVVGCLGSG---RWPGRLLGSVSSGLLRHAHCPVVIIH---DEDSVMPHPQQAP 161
Query: 210 KSDGLKLGRENELCTVAEEDEQEYHD----AFDKHSDIE 244
G+ +EL T DE + A SD++
Sbjct: 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVD 200
>sp|Q8ZLD7|USPA_SALTY Universal stress protein A OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspA PE=3 SV=3
Length = 144
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVI-LLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A I L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKISLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|P0AED4|USPA_SHISO Universal stress protein A OS=Shigella sonnei GN=uspA PE=3 SV=2
Length = 144
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|P0AED3|USPA_SHIFL Universal stress protein A OS=Shigella flexneri GN=uspA PE=3 SV=2
Length = 144
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|P0AED0|USPA_ECOLI Universal stress protein A OS=Escherichia coli (strain K12) GN=uspA
PE=1 SV=2
Length = 144
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|P0AED1|USPA_ECOL6 Universal stress protein A OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspA PE=3 SV=2
Length = 144
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|P0AED2|USPA_ECO57 Universal stress protein A OS=Escherichia coli O157:H7 GN=uspA PE=3
SV=2
Length = 144
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVRPT-SVLYGADWGAIEVSL-E 93
A++ I IAVDLS ES V+ AV + RP +A V L+HV S LY G I+V+L +
Sbjct: 2 AYKHILIAVDLSPESKVLVEKAV-SMARPYNAKVSLIHVDVNYSDLYT---GLIDVNLGD 57
Query: 94 MSE--SEESQRKLEDDFDQF------TTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLC 145
M + SEE+ L + T + + DL Q LV+A +K +DM +C
Sbjct: 58 MQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDA--------IKKYDMDLVVC 109
>sp|Q9LV52|HSFC1_ARATH Heat stress transcription factor C-1 OS=Arabidopsis thaliana
GN=HSFC1 PE=2 SV=1
Length = 330
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 80 LYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHD 139
+YG D E+ E+ +E QR+LE + + +P E + F +V+D D
Sbjct: 113 MYGQDLEDGEIVREIERLKEEQRELEAEIQRMNRRIEATEKRP--EQMMAFLYKVVEDPD 170
Query: 140 MKERLCLEVER 150
+ R+ LE ER
Sbjct: 171 LLPRMMLEKER 181
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 151 LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
LG+ ++ G+ G A ++ +GSVS+ V H C V+VVR
Sbjct: 104 LGVDLIMCGTSGLNAVERFI---VGSVSEAIVRHAPCDVLVVR 143
>sp|Q83M07|USPG_SHIFL Universal stress protein G OS=Shigella flexneri GN=uspG PE=3 SV=1
Length = 142
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 45 VDLSDESAFAVKWAVQNYLRPGDAVI-LLHVRPTSVLYGADWGAIEVS-LEMSESEESQR 102
++LSD+ AV+ A +L D VI LLHV P S A +V E E++
Sbjct: 14 MELSDK---AVRHA--EFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEE 68
Query: 103 KLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRG 162
+L+ FT + ++ + F +++ + E LG V++GSR
Sbjct: 69 RLQTMVSHFTIDPSR------IKQHVRFG-------SVRDEVNELAEELGADVVVIGSRN 115
Query: 163 FGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
S LGS + + H PV+VVR
Sbjct: 116 ----PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|Q8XBT3|USPG_ECO57 Universal stress protein G OS=Escherichia coli O157:H7 GN=uspG PE=3
SV=1
Length = 142
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 45 VDLSDESAFAVKWAVQNYLRPGDAVI-LLHVRPTSVLYGADWGAIEVS-LEMSESEESQR 102
++LSD+ AV+ A +L D VI LLHV P S A +V E E++
Sbjct: 14 MELSDK---AVRHA--EFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEE 68
Query: 103 KLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRG 162
+L+ FT + ++ + F +++ + E LG V++GSR
Sbjct: 69 RLQTMVSHFTIDPSR------IKQHVRFG-------SVRDEVNELAEELGADVVVIGSRN 115
Query: 163 FGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193
S LGS + + H PV+VVR
Sbjct: 116 ----PSISTHLLGSNASSVIRHANLPVLVVR 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,207,910
Number of Sequences: 539616
Number of extensions: 3744042
Number of successful extensions: 9563
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 9547
Number of HSP's gapped (non-prelim): 38
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)