Query 025835
Match_columns 247
No_of_seqs 195 out of 1756
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnj_A Universal stress protei 99.9 1.5E-26 5.1E-31 180.1 14.6 147 34-196 2-149 (150)
2 3s3t_A Nucleotide-binding prot 99.9 1.6E-26 5.3E-31 179.1 14.1 143 35-193 2-146 (146)
3 1mjh_A Protein (ATP-binding do 99.9 3.2E-25 1.1E-29 174.8 16.8 150 37-195 4-160 (162)
4 2dum_A Hypothetical protein PH 99.9 5.8E-25 2E-29 174.8 18.2 151 36-199 3-161 (170)
5 3hgm_A Universal stress protei 99.9 1E-25 3.6E-30 174.4 12.8 144 37-192 1-147 (147)
6 3fg9_A Protein of universal st 99.9 9.5E-25 3.2E-29 171.2 16.2 142 34-193 11-156 (156)
7 2z08_A Universal stress protei 99.9 5.3E-25 1.8E-29 169.0 14.3 136 37-193 1-137 (137)
8 3idf_A USP-like protein; unive 99.9 1.5E-24 5.1E-29 166.5 15.5 137 38-193 1-138 (138)
9 1tq8_A Hypothetical protein RV 99.9 9.2E-25 3.2E-29 173.3 13.4 144 34-196 13-160 (163)
10 3dlo_A Universal stress protei 99.9 1.2E-24 4E-29 171.4 12.8 135 33-193 19-155 (155)
11 2gm3_A Unknown protein; AT3G01 99.9 5.7E-24 1.9E-28 170.0 15.6 149 36-196 3-165 (175)
12 3fdx_A Putative filament prote 99.9 4.4E-24 1.5E-28 164.6 11.3 140 39-193 2-143 (143)
13 1jmv_A USPA, universal stress 99.9 1E-23 3.5E-28 162.3 11.5 137 37-196 1-140 (141)
14 3mt0_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 174.8 14.5 158 15-195 112-277 (290)
15 3olq_A Universal stress protei 99.9 6.2E-22 2.1E-26 172.1 15.5 150 35-197 4-153 (319)
16 3cis_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 169.4 14.1 160 15-195 145-307 (309)
17 3loq_A Universal stress protei 99.9 6.1E-22 2.1E-26 170.6 10.1 145 35-197 19-165 (294)
18 3loq_A Universal stress protei 99.9 1.5E-21 5.2E-26 168.2 12.5 143 19-197 150-293 (294)
19 3olq_A Universal stress protei 99.9 1.4E-21 4.9E-26 169.8 12.3 163 16-196 135-307 (319)
20 3cis_A Uncharacterized protein 99.9 3.1E-21 1.1E-25 167.4 13.8 150 33-197 14-164 (309)
21 3ab8_A Putative uncharacterize 99.8 5E-21 1.7E-25 162.6 12.3 151 39-197 1-152 (268)
22 3mt0_A Uncharacterized protein 99.8 2.6E-21 9E-26 166.5 10.4 127 35-196 4-130 (290)
23 1q77_A Hypothetical protein AQ 99.8 3.5E-21 1.2E-25 147.6 8.1 135 36-193 2-138 (138)
24 3ab8_A Putative uncharacterize 99.8 9.1E-19 3.1E-23 148.6 11.9 139 12-193 130-268 (268)
25 2iel_A Hypothetical protein TT 93.5 1.7 5.9E-05 32.4 13.4 129 38-192 1-133 (138)
26 3qjg_A Epidermin biosynthesis 93.3 0.35 1.2E-05 37.9 7.9 113 37-193 4-117 (175)
27 1wy5_A TILS, hypothetical UPF0 92.0 2.5 8.4E-05 36.0 12.3 38 38-75 24-62 (317)
28 4b4k_A N5-carboxyaminoimidazol 91.9 0.74 2.5E-05 36.0 7.9 60 127-197 49-111 (181)
29 4grd_A N5-CAIR mutase, phospho 91.7 0.68 2.3E-05 36.0 7.4 60 127-197 39-101 (173)
30 2ejb_A Probable aromatic acid 91.0 0.49 1.7E-05 37.5 6.3 122 39-194 2-126 (189)
31 3a2k_A TRNA(Ile)-lysidine synt 90.6 1.3 4.3E-05 40.0 9.4 38 38-75 18-55 (464)
32 1efv_B Electron transfer flavo 90.3 4.7 0.00016 33.3 12.0 83 44-164 35-128 (255)
33 2ywx_A Phosphoribosylaminoimid 89.9 0.72 2.4E-05 35.3 6.0 57 127-194 26-82 (157)
34 3kuu_A Phosphoribosylaminoimid 89.8 1.4 4.8E-05 34.3 7.7 59 127-196 39-100 (174)
35 1efp_B ETF, protein (electron 89.7 3.2 0.00011 34.3 10.4 83 44-164 32-125 (252)
36 1o97_C Electron transferring f 89.6 2.6 8.8E-05 35.1 9.9 85 43-164 31-124 (264)
37 3trh_A Phosphoribosylaminoimid 89.3 1.3 4.3E-05 34.4 7.1 59 127-196 33-94 (169)
38 1xmp_A PURE, phosphoribosylami 89.2 0.91 3.1E-05 35.2 6.2 60 127-197 38-100 (170)
39 3ih5_A Electron transfer flavo 89.0 2.1 7.3E-05 34.5 8.7 39 38-76 3-46 (217)
40 1u11_A PURE (N5-carboxyaminoim 88.9 1.4 4.8E-05 34.5 7.2 60 127-197 48-110 (182)
41 3oow_A Phosphoribosylaminoimid 88.8 1.7 5.8E-05 33.6 7.5 60 127-197 32-94 (166)
42 3ors_A N5-carboxyaminoimidazol 88.4 1.7 5.8E-05 33.5 7.2 60 127-197 30-92 (163)
43 3lp6_A Phosphoribosylaminoimid 87.9 1.7 5.9E-05 33.8 7.1 60 127-197 34-96 (174)
44 1p3y_1 MRSD protein; flavoprot 87.7 0.42 1.4E-05 38.0 3.6 118 36-194 6-123 (194)
45 3rg8_A Phosphoribosylaminoimid 86.4 1.6 5.5E-05 33.5 6.0 59 127-196 29-91 (159)
46 1o4v_A Phosphoribosylaminoimid 86.1 2.3 7.8E-05 33.3 6.8 60 127-197 40-102 (183)
47 3g40_A Na-K-CL cotransporter; 82.3 18 0.00062 30.4 11.2 126 37-197 19-149 (294)
48 1mvl_A PPC decarboxylase athal 82.1 0.49 1.7E-05 38.2 1.5 42 153-194 97-140 (209)
49 1zun_A Sulfate adenylyltransfe 81.6 5.8 0.0002 33.9 8.3 38 38-75 46-83 (325)
50 2xry_A Deoxyribodipyrimidine p 81.1 7.9 0.00027 34.9 9.4 116 46-194 46-161 (482)
51 3mcu_A Dipicolinate synthase, 79.4 3.4 0.00012 33.1 5.7 49 150-198 82-133 (207)
52 3g40_A Na-K-CL cotransporter; 78.3 8.6 0.00029 32.4 7.9 122 34-199 151-282 (294)
53 2oq2_A Phosphoadenosine phosph 75.1 27 0.00093 28.5 10.3 37 38-75 41-77 (261)
54 3umv_A Deoxyribodipyrimidine p 73.4 9 0.00031 34.9 7.4 96 39-158 38-135 (506)
55 1iv0_A Hypothetical protein; r 73.2 6.5 0.00022 27.4 5.1 51 139-194 38-93 (98)
56 1k92_A Argininosuccinate synth 71.2 57 0.002 29.2 12.2 36 36-75 8-43 (455)
57 2wq7_A RE11660P; lyase-DNA com 70.7 22 0.00075 32.6 9.4 128 40-194 30-161 (543)
58 2nz2_A Argininosuccinate synth 69.2 45 0.0015 29.4 10.8 35 37-75 4-38 (413)
59 3bl5_A Queuosine biosynthesis 68.6 39 0.0013 26.2 11.4 35 38-76 3-37 (219)
60 3zqu_A Probable aromatic acid 68.0 7.4 0.00025 31.1 5.0 38 36-74 2-39 (209)
61 1g63_A Epidermin modifying enz 66.4 5.3 0.00018 31.2 3.8 115 37-194 1-115 (181)
62 3gxq_A Putative regulator of t 66.3 5.5 0.00019 23.4 2.8 30 127-156 9-38 (54)
63 1ni5_A Putative cell cycle pro 65.3 32 0.0011 30.4 9.2 38 38-75 13-51 (433)
64 2h31_A Multifunctional protein 64.8 11 0.00038 33.5 5.9 61 124-195 289-353 (425)
65 3tvs_A Cryptochrome-1; circadi 64.5 9 0.00031 35.2 5.5 92 46-160 13-107 (538)
66 2wsi_A FAD synthetase; transfe 63.5 26 0.00087 29.5 7.8 95 39-165 54-170 (306)
67 1sur_A PAPS reductase; assimil 62.8 52 0.0018 25.6 10.1 33 39-75 45-77 (215)
68 1dnp_A DNA photolyase; DNA rep 61.0 22 0.00074 31.9 7.3 93 46-161 10-104 (471)
69 2c5s_A THII, probable thiamine 58.0 58 0.002 28.5 9.4 37 36-76 185-221 (413)
70 2hma_A Probable tRNA (5-methyl 57.0 87 0.003 27.0 10.3 36 37-76 8-43 (376)
71 3kcq_A Phosphoribosylglycinami 56.7 42 0.0014 26.7 7.6 89 34-162 4-92 (215)
72 2j07_A Deoxyribodipyrimidine p 55.5 40 0.0014 29.6 8.0 111 46-194 11-121 (420)
73 1kor_A Argininosuccinate synth 55.1 1E+02 0.0035 26.9 10.5 34 39-75 1-34 (400)
74 1w2w_B 5-methylthioribose-1-ph 54.6 4.8 0.00016 31.8 1.5 61 127-194 30-93 (191)
75 3da8_A Probable 5'-phosphoribo 54.5 62 0.0021 25.7 8.2 86 36-162 10-99 (215)
76 1u3d_A Cryptochrome 1 apoprote 52.5 75 0.0026 28.6 9.5 118 46-194 21-138 (509)
77 2a0u_A Initiation factor 2B; S 51.4 15 0.00052 32.1 4.4 63 125-194 235-298 (383)
78 3fy4_A 6-4 photolyase; DNA rep 51.3 24 0.00081 32.4 5.9 95 46-161 14-112 (537)
79 1ccw_A Protein (glutamate muta 51.2 63 0.0022 23.4 7.3 60 127-193 31-92 (137)
80 1np7_A DNA photolyase; protein 50.8 1.4E+02 0.0047 26.7 11.1 101 40-161 7-109 (489)
81 1nu0_A Hypothetical protein YQ 50.1 10 0.00036 28.1 2.7 56 140-196 41-98 (138)
82 4ds3_A Phosphoribosylglycinami 49.8 84 0.0029 24.8 8.3 88 36-162 5-96 (209)
83 1vl2_A Argininosuccinate synth 49.5 25 0.00084 31.2 5.5 37 35-75 11-47 (421)
84 2ywb_A GMP synthase [glutamine 49.2 1.5E+02 0.005 26.6 11.0 33 39-75 210-242 (503)
85 1sbz_A Probable aromatic acid 48.6 26 0.00089 27.6 5.0 119 39-194 1-122 (197)
86 3p9x_A Phosphoribosylglycinami 48.2 1E+02 0.0034 24.4 8.8 86 38-162 2-91 (211)
87 2yvk_A Methylthioribose-1-phos 47.4 16 0.00054 32.0 3.8 64 124-194 230-294 (374)
88 3k32_A Uncharacterized protein 47.4 26 0.00087 27.4 4.9 38 35-76 3-40 (203)
89 1vlc_A 3-isopropylmalate dehyd 46.8 21 0.00071 31.1 4.5 27 48-74 173-199 (366)
90 1owl_A Photolyase, deoxyribodi 46.7 49 0.0017 29.7 7.2 118 46-194 12-129 (484)
91 1t9k_A Probable methylthioribo 46.1 16 0.00055 31.5 3.7 64 124-194 205-269 (347)
92 1t5o_A EIF2BD, translation ini 45.4 17 0.0006 31.4 3.8 62 125-194 204-266 (351)
93 1vhx_A Putative holliday junct 42.6 7 0.00024 29.4 0.8 56 139-195 42-99 (150)
94 2e0i_A 432AA long hypothetical 41.6 64 0.0022 28.6 7.0 117 46-194 10-126 (440)
95 2y3z_A 3-isopropylmalate dehyd 40.7 25 0.00085 30.5 4.0 27 48-74 162-188 (359)
96 1qzu_A Hypothetical protein MD 39.6 25 0.00085 27.9 3.6 44 151-194 95-140 (206)
97 2yxb_A Coenzyme B12-dependent 39.4 36 0.0012 25.6 4.4 60 127-193 46-107 (161)
98 1qv9_A F420-dependent methylen 39.3 55 0.0019 26.8 5.5 46 142-194 54-99 (283)
99 1vbk_A Hypothetical protein PH 38.8 1.7E+02 0.0058 24.3 11.0 35 36-75 177-211 (307)
100 3h5i_A Response regulator/sens 38.6 82 0.0028 21.8 6.2 53 139-197 37-89 (140)
101 2dpl_A GMP synthetase, GMP syn 37.2 1.4E+02 0.0048 24.8 8.2 34 39-75 21-54 (308)
102 3ouz_A Biotin carboxylase; str 37.0 85 0.0029 27.3 7.1 38 34-76 2-39 (446)
103 3tqr_A Phosphoribosylglycinami 37.0 1.5E+02 0.0053 23.3 8.8 85 38-162 5-93 (215)
104 1y80_A Predicted cobalamin bin 36.1 44 0.0015 26.0 4.6 60 127-193 116-178 (210)
105 3ecs_A Translation initiation 36.0 70 0.0024 27.1 6.0 62 125-195 170-232 (315)
106 2der_A TRNA-specific 2-thiouri 35.4 2E+02 0.0068 24.8 9.1 35 37-75 16-50 (380)
107 2i2x_B MTAC, methyltransferase 35.3 95 0.0032 25.1 6.7 62 127-195 151-213 (258)
108 1w0d_A 3-isopropylmalate dehyd 35.0 83 0.0028 26.9 6.4 27 48-74 153-179 (337)
109 3to5_A CHEY homolog; alpha(5)b 34.7 79 0.0027 22.7 5.5 47 144-197 49-98 (134)
110 3o1l_A Formyltetrahydrofolate 34.6 2E+02 0.0069 24.0 9.4 85 37-162 104-191 (302)
111 1g63_A Epidermin modifying enz 34.4 20 0.00068 27.8 2.2 8 187-194 136-143 (181)
112 2pg3_A Queuosine biosynthesis 34.3 1.6E+02 0.0056 22.9 12.1 34 38-75 2-35 (232)
113 3qk7_A Transcriptional regulat 34.1 1.8E+02 0.006 23.2 8.4 58 127-195 40-97 (294)
114 2j4d_A Cryptochrome 3, cryptoc 33.8 2.6E+02 0.009 25.1 11.8 102 39-161 40-144 (525)
115 3vmk_A 3-isopropylmalate dehyd 33.3 1E+02 0.0035 26.8 6.8 27 48-74 178-204 (375)
116 3nbm_A PTS system, lactose-spe 32.8 72 0.0024 22.3 4.8 54 127-195 34-87 (108)
117 3n0v_A Formyltetrahydrofolate 32.5 2.1E+02 0.0072 23.6 10.0 85 37-162 89-176 (286)
118 3lou_A Formyltetrahydrofolate 32.4 2.2E+02 0.0074 23.6 10.3 86 36-162 93-181 (292)
119 3lqk_A Dipicolinate synthase s 31.9 35 0.0012 26.9 3.3 52 151-202 85-139 (201)
120 2ywr_A Phosphoribosylglycinami 31.1 1.9E+02 0.0065 22.6 9.3 20 142-161 70-89 (216)
121 2bon_A Lipid kinase; DAG kinas 30.5 1.2E+02 0.0041 25.4 6.8 61 127-196 57-120 (332)
122 2o8v_A Phosphoadenosine phosph 29.8 2.1E+02 0.0073 22.8 9.3 32 39-74 46-77 (252)
123 1o97_D Electron transferring f 29.7 2.5E+02 0.0085 23.6 9.7 34 41-75 3-42 (320)
124 3u1h_A 3-isopropylmalate dehyd 29.6 1.3E+02 0.0046 26.2 6.9 27 48-74 185-211 (390)
125 3udu_A 3-isopropylmalate dehyd 29.2 1E+02 0.0034 26.7 6.0 27 48-74 166-192 (361)
126 2qv7_A Diacylglycerol kinase D 29.2 82 0.0028 26.5 5.5 61 127-196 55-116 (337)
127 3hly_A Flavodoxin-like domain; 29.2 97 0.0033 22.8 5.3 35 127-164 29-63 (161)
128 3s40_A Diacylglycerol kinase; 28.9 92 0.0031 25.7 5.7 60 127-196 39-99 (304)
129 3tqi_A GMP synthase [glutamine 28.8 47 0.0016 30.2 4.0 34 39-75 231-264 (527)
130 2o2z_A Hypothetical protein; s 28.2 92 0.0032 26.5 5.5 62 129-196 155-220 (323)
131 3fni_A Putative diflavin flavo 28.0 73 0.0025 23.6 4.4 35 127-164 33-68 (159)
132 1meo_A Phosophoribosylglycinam 28.0 2.2E+02 0.0074 22.3 8.9 85 39-162 1-89 (209)
133 3f6p_A Transcriptional regulat 27.6 1.4E+02 0.0047 19.9 8.1 51 139-197 34-84 (120)
134 2zay_A Response regulator rece 27.6 1.5E+02 0.0052 20.4 6.8 49 142-197 42-93 (147)
135 1cnz_A IPMDH, IMDH, protein (3 27.5 1.5E+02 0.0053 25.5 6.9 27 48-74 169-195 (363)
136 3hv2_A Response regulator/HD d 27.5 1.3E+02 0.0045 21.0 5.8 50 139-196 46-96 (153)
137 2a9o_A Response regulator; ess 27.3 1.3E+02 0.0046 19.6 5.5 50 139-196 33-82 (120)
138 2ppv_A Uncharacterized protein 27.2 1.6E+02 0.0055 25.1 6.9 63 129-197 154-220 (332)
139 3auf_A Glycinamide ribonucleot 27.0 2.4E+02 0.0081 22.4 9.1 21 141-161 90-110 (229)
140 1x0l_A Homoisocitrate dehydrog 26.8 1.2E+02 0.0042 25.8 6.0 27 48-74 143-170 (333)
141 2amj_A Modulator of drug activ 26.3 1.2E+02 0.0042 23.3 5.7 35 127-163 47-81 (204)
142 1v6t_A Hypothetical UPF0271 pr 26.2 2E+02 0.0067 23.6 6.9 132 41-200 31-171 (255)
143 1to6_A Glycerate kinase; glyce 25.9 69 0.0024 27.8 4.3 60 132-196 257-319 (371)
144 2d1c_A Isocitrate dehydrogenas 25.3 37 0.0013 30.8 2.5 27 48-74 164-191 (496)
145 3kht_A Response regulator; PSI 25.2 1.7E+02 0.0057 20.1 7.6 49 142-197 41-92 (144)
146 1a05_A IPMDH, IMDH, 3-isopropy 25.1 1.8E+02 0.006 25.1 6.8 27 48-74 164-190 (358)
147 3n53_A Response regulator rece 24.3 1.7E+02 0.0059 19.9 6.1 51 139-197 34-87 (140)
148 3vk5_A MOEO5; TIM barrel, tran 24.3 52 0.0018 27.5 3.1 46 144-193 58-104 (286)
149 3flk_A Tartrate dehydrogenase/ 24.1 1.1E+02 0.0037 26.5 5.3 27 48-74 165-192 (364)
150 3r8w_A 3-isopropylmalate dehyd 24.1 1.9E+02 0.0064 25.4 6.8 27 48-74 206-232 (405)
151 1vb5_A Translation initiation 23.6 71 0.0024 26.4 3.9 61 127-196 160-221 (276)
152 3pm6_A Putative fructose-bisph 23.5 42 0.0014 28.4 2.4 63 127-192 26-88 (306)
153 3gt7_A Sensor protein; structu 23.4 2E+02 0.0067 20.2 7.5 49 142-197 41-92 (154)
154 3t8y_A CHEB, chemotaxis respon 23.1 1.6E+02 0.0054 21.1 5.5 51 139-197 59-109 (164)
155 2p0y_A Hypothetical protein LP 22.9 83 0.0028 27.0 4.2 50 140-195 178-229 (341)
156 1mkz_A Molybdenum cofactor bio 22.8 1.4E+02 0.0047 22.5 5.2 33 127-159 41-76 (172)
157 3i42_A Response regulator rece 22.4 1.8E+02 0.0061 19.4 8.4 50 142-198 37-89 (127)
158 3blx_A Isocitrate dehydrogenas 22.1 1.6E+02 0.0056 25.2 6.0 27 48-74 156-183 (349)
159 1mio_B Nitrogenase molybdenum 22.1 4E+02 0.014 23.3 10.8 28 133-161 367-394 (458)
160 3cg4_A Response regulator rece 22.0 1.9E+02 0.0066 19.6 7.6 49 142-197 41-92 (142)
161 1jq5_A Glycerol dehydrogenase; 22.0 2E+02 0.007 24.3 6.7 59 127-196 58-120 (370)
162 3iwt_A 178AA long hypothetical 22.0 1.2E+02 0.0043 22.7 4.8 35 126-160 52-89 (178)
163 3n0r_A Response regulator; sig 21.6 3.2E+02 0.011 22.0 8.6 50 139-196 193-243 (286)
164 2gkg_A Response regulator homo 21.5 1.8E+02 0.0061 19.1 8.1 48 142-196 39-89 (127)
165 2qxy_A Response regulator; reg 21.3 2E+02 0.0068 19.6 6.8 48 142-197 38-86 (142)
166 3dm5_A SRP54, signal recogniti 21.3 2.6E+02 0.009 24.7 7.4 32 42-74 105-136 (443)
167 3o1i_D Periplasmic protein TOR 21.3 2E+02 0.007 22.7 6.3 57 127-193 35-94 (304)
168 1v95_A Nuclear receptor coacti 21.1 1.8E+02 0.0061 21.1 5.2 39 123-161 31-70 (130)
169 1qzu_A Hypothetical protein MD 21.1 37 0.0013 26.9 1.5 38 36-73 17-54 (206)
170 3grc_A Sensor protein, kinase; 21.0 2E+02 0.0069 19.5 7.8 48 142-196 40-90 (140)
171 2pju_A Propionate catabolism o 21.0 2.2E+02 0.0075 22.6 6.2 34 127-160 129-162 (225)
172 3o3m_A Alpha subunit 2-hydroxy 21.0 66 0.0023 28.1 3.3 56 139-197 321-376 (408)
173 3ia7_A CALG4; glycosysltransfe 20.5 1.6E+02 0.0056 24.4 5.7 37 37-74 3-40 (402)
174 3av3_A Phosphoribosylglycinami 20.3 3.1E+02 0.011 21.3 9.0 22 141-162 71-92 (212)
175 2q7x_A UPF0052 protein SP_1565 20.3 1.2E+02 0.0041 25.8 4.7 50 140-195 174-225 (326)
176 3rjz_A N-type ATP pyrophosphat 20.1 3.4E+02 0.012 21.7 10.2 94 39-162 5-100 (237)
No 1
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.94 E-value=1.5e-26 Score=180.12 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=99.7
Q ss_pred CCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHH
Q 025835 34 TGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTT 113 (247)
Q Consensus 34 ~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (247)
.|+++++||||+|+|+.+..+++||+.+|...+++|+++||++........++...........+...+..++.++.+..
T Consensus 2 ~m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (150)
T 3tnj_A 2 HMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGN 81 (150)
T ss_dssp --CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999876432111111111111111223333334444333322
Q ss_pred HhhhhhhhhhhhCCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 114 TKANDLAQPLVEAQIP-FKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 114 ~~~~~~~~~~~~~~v~-v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
+. +++ +++++..| ++.+.|+++++++++||||||+++++.+. + ++||++++|+++++||||||
T Consensus 82 ~~-----------~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~---~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 82 TL-----------GIDPAHRWLVWG-EPREEIIRIAEQENVDLIVVGSHGRHGLA-L---LLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HH-----------TCCGGGEEEEES-CHHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEE
T ss_pred Hc-----------CCCcceEEEecC-CHHHHHHHHHHHcCCCEEEEecCCCCCcC-e---EecchHHHHHHhCCCCEEEE
Confidence 21 555 46677777 79999999999999999999999999999 9 99999999999999999999
Q ss_pred ecCC
Q 025835 193 RFSD 196 (247)
Q Consensus 193 ~~~~ 196 (247)
|++.
T Consensus 146 ~~~~ 149 (150)
T 3tnj_A 146 RLRD 149 (150)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9764
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=1.6e-26 Score=179.08 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=111.5
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTT 114 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (247)
.+++++||||+|+|+.+..+++||+.+|...+++|+++||++.........+. ......+...+..++
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------- 69 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDP----VLSELLDAEAAHAKD-------- 69 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHH----HHHHHHHHHHHHHHH--------
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccc----ccHHHHHHHHHHHHH--------
Confidence 46899999999999999999999999999999999999999875433211110 111111112222222
Q ss_pred hhhhhhhhhhhCCC-ceEEEEEecCChHHHHHH-HHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 115 KANDLAQPLVEAQI-PFKIHIVKDHDMKERLCL-EVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 115 ~~~~~~~~~~~~~v-~v~~~v~~g~d~~~~I~~-~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
.++.+...+...|+ ++++++..| ++.+.|++ ++++.++||||||+++++.+.++ ++||++++|+++++||||||
T Consensus 70 ~l~~~~~~~~~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 70 AMRQRQQFVATTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV---AVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHHHHHHTTSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC---SSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHhcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcceE---EEcchHHHHhccCCCCEEEe
Confidence 22333334445588 999999988 79999999 99999999999999999999999 99999999999999999999
Q ss_pred e
Q 025835 193 R 193 (247)
Q Consensus 193 ~ 193 (247)
|
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 7
No 3
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=3.2e-25 Score=174.84 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=107.9
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCC-----CccCCCccc--chhhhcchhhHHHHHHHHHHHH
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTS-----VLYGADWGA--IEVSLEMSESEESQRKLEDDFD 109 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 109 (247)
++++||||+|+|+.+..|++||+.+|...+++|+++||++.. ......... .. ...........+.+.+..
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 81 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLN-KSVEEFENELKNKLTEEA- 81 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHH-
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccc-cchhhhHHHHHHHHHHHH-
Confidence 689999999999999999999999999999999999998753 110100000 00 000000001111111111
Q ss_pred HHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccE
Q 025835 110 QFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPV 189 (247)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PV 189 (247)
.+.++.+.+.+...|+++++++..| ++.+.|+++++++++||||||++|++++.++ ++||++++|+++++|||
T Consensus 82 ---~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~---~~GSv~~~vl~~~~~pV 154 (162)
T 1mjh_A 82 ---KNKMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI---LLGSVTENVIKKSNKPV 154 (162)
T ss_dssp ---HHHHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC---SSCHHHHHHHHHCCSCE
T ss_pred ---HHHHHHHHHHHHHcCCceEEEEcCC-CHHHHHHHHHHHcCCCEEEEcCCCCCCccce---EecchHHHHHHhCCCCE
Confidence 1122222333445588999888888 7999999999999999999999999999999 99999999999999999
Q ss_pred EEEecC
Q 025835 190 IVVRFS 195 (247)
Q Consensus 190 lvV~~~ 195 (247)
||||..
T Consensus 155 lvv~~~ 160 (162)
T 1mjh_A 155 LVVKRK 160 (162)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999864
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.93 E-value=5.8e-25 Score=174.83 Aligned_cols=151 Identities=19% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccch------hhhcchhhHHHHHHHHHHHH
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIE------VSLEMSESEESQRKLEDDFD 109 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~ 109 (247)
.++++||||+|+|+.+..+++||+.+|+..+++|++|||++........ ..+. ........+..++..++.++
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIELKDIKEKLKEEASRKLQ 81 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------CCTTSHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-cccccccccccccHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998754321100 0000 00001111222222222222
Q ss_pred HHHHHhhhhhhhhhhhCCCceEE--EEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCc
Q 025835 110 QFTTTKANDLAQPLVEAQIPFKI--HIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVC 187 (247)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~v~v~~--~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~ 187 (247)
.+.. .+...++++++ ++..| ++.+.|+++++++++||||||+++++++.++ ++||++++|+++++|
T Consensus 82 ~~~~--------~~~~~g~~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~---~~Gsv~~~vl~~~~~ 149 (170)
T 2dum_A 82 EKAE--------EVKRAFRAKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKLSLSHE---FLGSTVMRVLRKTKK 149 (170)
T ss_dssp HHHH--------HHHHHTTCSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCCC--TT---CCCHHHHHHHHHCSS
T ss_pred HHHH--------HHHHcCCceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCCccccc---eechHHHHHHHhCCC
Confidence 2221 22233788887 77777 7999999999999999999999999999999 999999999999999
Q ss_pred cEEEEecCCCCC
Q 025835 188 PVIVVRFSDDKD 199 (247)
Q Consensus 188 PVlvV~~~~~~~ 199 (247)
||||||......
T Consensus 150 PVlvv~~~~~~~ 161 (170)
T 2dum_A 150 PVLIIKEVDENE 161 (170)
T ss_dssp CEEEECCCCCC-
T ss_pred CEEEEccCCccc
Confidence 999999765443
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.93 E-value=1e-25 Score=174.44 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=106.4
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
|+++||||+|+|+.+..+++||+.+|...+++|+++||++....+................+..++..++.++.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 76 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAK---- 76 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHH----
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHH----
Confidence 6899999999999999999999999999999999999987643110000000011111111222222222222221
Q ss_pred hhhhhhhhhCCCce---EEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 117 NDLAQPLVEAQIPF---KIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 117 ~~~~~~~~~~~v~v---~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
+.+...|+++ ++++..| ++.+.|+++++++++||||||+++++.+.++ ++||++++|+++++||||||
T Consensus 77 ----~~~~~~g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 77 ----TRATELGVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTNGDKSL---LLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp ----HHHHHTTCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTTCCSCC---CCCHHHHHHHHHCSSCEEEC
T ss_pred ----HHHHhcCCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCccccce---eeccHHHHHHhhCCCCEEEC
Confidence 1223347777 8888888 7999999999999999999999999999999 99999999999999999986
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=9.5e-25 Score=171.24 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=107.3
Q ss_pred CCCCCCeEEEeec--CChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHH
Q 025835 34 TGGAHRKIGIAVD--LSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQF 111 (247)
Q Consensus 34 ~~~~~k~ILVavD--~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (247)
.++++++||||+| +|+.+..+++||+.+|+..+++|+++||++...... +..... ...+...+..++.++.
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~~~----~~~~~~~~~~~~~l~~- 83 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI--FDSLTP----SKIQAKRKHVEDVVAE- 83 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC--CCSSHH----HHHHHHHHHHHHHHHH-
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc--cccCCH----HHHHHHHHHHHHHHHH-
Confidence 3578999999999 999999999999999999999999999997754321 111111 1112222222222222
Q ss_pred HHHhhhhhhhhhhhCCC-ceEEEEEecCChHHHHHHH-HHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccE
Q 025835 112 TTTKANDLAQPLVEAQI-PFKIHIVKDHDMKERLCLE-VERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPV 189 (247)
Q Consensus 112 ~~~~~~~~~~~~~~~~v-~v~~~v~~g~d~~~~I~~~-a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PV 189 (247)
+.+.+.+.|+ .+++++..++++.+.|+++ ++++++||||||++++++++ . ++||++++|+++++|||
T Consensus 84 -------~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~---~~Gs~~~~vl~~a~~PV 152 (156)
T 3fg9_A 84 -------YVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K---IAGAIGPRLARKAPISV 152 (156)
T ss_dssp -------HHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S---SCSCHHHHHHHHCSSEE
T ss_pred -------HHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e---eecchHHHHHHhCCCCE
Confidence 2222334488 5899999834899999999 99999999999999999986 6 89999999999999999
Q ss_pred EEEe
Q 025835 190 IVVR 193 (247)
Q Consensus 190 lvV~ 193 (247)
||||
T Consensus 153 lvV~ 156 (156)
T 3fg9_A 153 IVVR 156 (156)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 7
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.93 E-value=5.3e-25 Score=169.03 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=102.3
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
++++||||+|+|+.+..+++||+.+|+..+++|+++||+++... .+.... . +...+..++..++.++.+...
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~-- 72 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD---YLGEPF-F--EEALRRRLERAEGVLEEARAL-- 72 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc---cccccc-h--HHHHHHHHHHHHHHHHHHHHH--
Confidence 57999999999999999999999999999999999999874321 111110 0 011111222222222222111
Q ss_pred hhhhhhhhhCCC-ceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 117 NDLAQPLVEAQI-PFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 117 ~~~~~~~~~~~v-~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
.|+ ++++++..| ++.+.|+++++++++||||||+++++++.++ ++||++++|+++++|||||||
T Consensus 73 ---------~g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 73 ---------TGVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRGLGALGSL---FLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp ---------HCCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSCTTCCSCS---SSCHHHHHHHHHCSSCEEEEC
T ss_pred ---------cCCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCCCchhhhh---hhccHHHHHHhcCCCCEEEeC
Confidence 277 777887777 7999999999999999999999999999999 999999999999999999996
No 8
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.92 E-value=1.5e-24 Score=166.45 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=105.2
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHh-CCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNY-LRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la-~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
|++||||+|+|+.+..+++||+.++ +..+++|+++||++....... .. ... ....+.+. +....+.+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~--~~---~~~----~~~~~~~~---~~~~~~~l 68 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE--AV---LAA----YDEIEMKE---EEKAKLLT 68 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH--HH---HHH----HHHHHHHH---HHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc--cc---cCc----HHHHHHHH---HHHHHHHH
Confidence 5899999999999999999999999 999999999999976543211 00 000 11111111 01112222
Q ss_pred hhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
+.+.+.+...|+++++++..| ++.+.|+++++ ++||||||+++++++.++ + ||++++|+++++|||||||
T Consensus 69 ~~~~~~~~~~g~~~~~~v~~g-~~~~~I~~~a~--~~dliV~G~~~~~~~~~~---~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 69 QKFSTFFTEKGINPFVVIKEG-EPVEMVLEEAK--DYNLLIIGSSENSFLNKI---F-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHTTTCCCEEEEEES-CHHHHHHHHHT--TCSEEEEECCTTSTTSSC---C-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHCCCCeEEEEecC-ChHHHHHHHHh--cCCEEEEeCCCcchHHHH---h-CcHHHHHHhcCCCCEEEeC
Confidence 333334445689999999998 79999999998 899999999999999999 8 9999999999999999997
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.92 E-value=9.2e-25 Score=173.35 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred CCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEE--EEecCCCc-cCCCcccchhhhcchhhHHHHHHHHHHHHH
Q 025835 34 TGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILL--HVRPTSVL-YGADWGAIEVSLEMSESEESQRKLEDDFDQ 110 (247)
Q Consensus 34 ~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~ll--hV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (247)
...++++||||+|+|+.+..+++||+.+|. .+++|++| ||++.... ...... .....+...+..++.+++.
T Consensus 13 ~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~--- 86 (163)
T 1tq8_A 13 SLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILK--DESYKVTGTAPIYEILHDA--- 86 (163)
T ss_dssp CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC----------------------CCTHHHHHHHH---
T ss_pred ccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccc--cHHHHHHHHHHHHHHHHHH---
Confidence 456789999999999999999999999999 99999999 77654322 110000 0000001111122222222
Q ss_pred HHHHhhhhhhhhhhhCCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccE
Q 025835 111 FTTTKANDLAQPLVEAQIP-FKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPV 189 (247)
Q Consensus 111 ~~~~~~~~~~~~~~~~~v~-v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PV 189 (247)
.+.+...+++ +++.+..| ++.+.|++++++.++||||||+++++.+.++ ++||++++|+++++|||
T Consensus 87 ---------~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSva~~vl~~a~~PV 153 (163)
T 1tq8_A 87 ---------KERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGR---LLGSVPANVSRRAKVDV 153 (163)
T ss_dssp ---------HHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHH---HTBBHHHHHHHHTTCEE
T ss_pred ---------HHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccce---eeccHHHHHHHhCCCCE
Confidence 2222344888 88888888 7999999999999999999999999999999 99999999999999999
Q ss_pred EEEecCC
Q 025835 190 IVVRFSD 196 (247)
Q Consensus 190 lvV~~~~ 196 (247)
||||.+.
T Consensus 154 lvV~~~~ 160 (163)
T 1tq8_A 154 LIVHTTE 160 (163)
T ss_dssp EEECCC-
T ss_pred EEEeCCC
Confidence 9998654
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=1.2e-24 Score=171.36 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=104.9
Q ss_pred CCCCCCCeEEEeecC-ChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHH
Q 025835 33 TTGGAHRKIGIAVDL-SDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQF 111 (247)
Q Consensus 33 ~~~~~~k~ILVavD~-S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (247)
...+++++||||+|+ |+.+..+++||+.+|...+++|++|||++.+... .+...+..++.+++..+
T Consensus 19 ~~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----------~~~~~~~~~~~l~~~~~-- 85 (155)
T 3dlo_A 19 FQGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-----------KDEDIIEAKETLSWAVS-- 85 (155)
T ss_dssp ---CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-----------CHHHHHHHHHHHHHHHH--
T ss_pred ccccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-----------cHHHHHHHHHHHHHHHH--
Confidence 356889999999999 9999999999999999999999999998753210 01112223333333222
Q ss_pred HHHhhhhhhhhhhhCCCceEEEE-EecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEE
Q 025835 112 TTTKANDLAQPLVEAQIPFKIHI-VKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVI 190 (247)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~v~~~v-~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVl 190 (247)
.+.+.++++++.+ +..+++.+.|+++++++++||||||+++++++.++ ++||++++|+++++||||
T Consensus 86 ----------~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSv~~~vl~~a~~PVL 152 (155)
T 3dlo_A 86 ----------IIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL---IFGSVARDVILKANKPVI 152 (155)
T ss_dssp ----------HHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE---ECCHHHHHHHHHCSSCEE
T ss_pred ----------HHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE---EeccHHHHHHHhCCCCEE
Confidence 2223477777653 33448999999999999999999999999999999 999999999999999999
Q ss_pred EEe
Q 025835 191 VVR 193 (247)
Q Consensus 191 vV~ 193 (247)
|||
T Consensus 153 vVr 155 (155)
T 3dlo_A 153 CIK 155 (155)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.92 E-value=5.7e-24 Score=169.98 Aligned_cols=149 Identities=23% Similarity=0.345 Sum_probs=95.5
Q ss_pred CCCCeEEEeecCCh---------HHHHHHHHHHHHh-CC--CCCEEEEEEEecCCCccCCCccc--chhhhcchhhHHHH
Q 025835 36 GAHRKIGIAVDLSD---------ESAFAVKWAVQNY-LR--PGDAVILLHVRPTSVLYGADWGA--IEVSLEMSESEESQ 101 (247)
Q Consensus 36 ~~~k~ILVavD~S~---------~s~~al~~A~~la-~~--~~a~v~llhV~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 101 (247)
..+++||||+|+|+ .+..+++||+.++ +. .+++|++|||++........... ..........+..+
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNK 82 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHH
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHH
Confidence 45799999999999 9999999999987 43 68999999998643211000000 00000000000111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHH
Q 025835 102 RKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYC 181 (247)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~v 181 (247)
+...+.++ .+...+...++++++++..| ++.+.|+++++++++||||||+++++++.++ ++||++++|
T Consensus 83 ~~~~~~l~--------~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~---~~Gsva~~v 150 (175)
T 2gm3_A 83 AKGLHLLE--------FFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKV---FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHH--------HHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHH
T ss_pred HHHHHHHH--------HHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhhhh---hcCchHHHH
Confidence 11111111 12222233488898888888 7999999999999999999999999999999 999999999
Q ss_pred hhcCCccEEEEecCC
Q 025835 182 VHHCVCPVIVVRFSD 196 (247)
Q Consensus 182 l~~a~~PVlvV~~~~ 196 (247)
+++++|||||||...
T Consensus 151 l~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 151 VKHAECPVMTIKRNA 165 (175)
T ss_dssp HHHCSSCEEEEECCG
T ss_pred HhCCCCCEEEEcCCc
Confidence 999999999999654
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.91 E-value=4.4e-24 Score=164.64 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=100.1
Q ss_pred CeEEEeecCChH--HHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 39 RKIGIAVDLSDE--SAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 39 k~ILVavD~S~~--s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
|+||||+|+|+. +..+++||+.+|+..+++|+++||++....+.. .+...... ....+...+...+.++.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~------ 73 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYAS-LGMAYTAE-LPGMDELREGSETQLKE------ 73 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHH------
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccc-ccccccch-hhhHHHHHHHHHHHHHH------
Confidence 899999999999 999999999999999999999999976432211 10000000 01111122222222222
Q ss_pred hhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
+++.+...++.+++.+..| ++.+.|+++++++++||||||+++ +++.++ ++||++++|+++++|||||||
T Consensus 74 --~~~~~~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~---~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 74 --IAKKFSIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASHR-PDITTY---LLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp --HHTTSCCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC---SSCHHHHHHHHHCSSEEEEEC
T ss_pred --HHHHcCCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee---eeccHHHHHHHhCCCCEEEeC
Confidence 2222212245678888888 799999999999999999999995 888899 999999999999999999997
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.90 E-value=1e-23 Score=162.30 Aligned_cols=137 Identities=24% Similarity=0.251 Sum_probs=99.5
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecC-CCccCCCcccchh-hhcchhhHHHHHHHHHHHHHHHHH
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPT-SVLYGADWGAIEV-SLEMSESEESQRKLEDDFDQFTTT 114 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 114 (247)
|+++||||+|+|+.+..+++||+.+|...+++|+++||++. +..+. .+..... ...+...+..++.+++..+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 74 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT-GLIDVNMSSMQDRISTETQKALLDLAE----- 74 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC-CCEEHHHHHHTTCCCCHHHHHHHHHHH-----
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc-cccccchHHHHHHHHHHHHHHHHHHHH-----
Confidence 57999999999999999999999999999999999999854 22111 1111000 0001111222222222211
Q ss_pred hhhhhhhhhhhCCCce-EEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 115 KANDLAQPLVEAQIPF-KIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 115 ~~~~~~~~~~~~~v~v-~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
..++++ ++.+..| ++.+.|++++++.++||||||++ ++++.++ ||++++|+++++|||||||
T Consensus 75 ----------~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~~~~~~l-----gs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 75 ----------SVDYPISEKLSGSG-DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKL-----MSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp ----------HSSSCCCCEEEEEE-CHHHHHHHHHHHTTCCEEEEEEC-CCCHHHH-----HHHHHHHHTTCCSEEEEEE
T ss_pred ----------HcCCCceEEEEecC-CHHHHHHHHHHhcCCCEEEEeCC-Cchhhhh-----cchHHHHHhcCCCCEEEee
Confidence 126665 4566667 79999999999999999999999 8887764 8999999999999999999
Q ss_pred cCC
Q 025835 194 FSD 196 (247)
Q Consensus 194 ~~~ 196 (247)
...
T Consensus 138 ~~~ 140 (141)
T 1jmv_A 138 LRD 140 (141)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 14
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.89 E-value=1.2e-22 Score=174.84 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=115.2
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCeEEEeecCChH-------HHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCccc
Q 025835 15 ATAVIVQPSSPRFPLSSPTTGGAHRKIGIAVDLSDE-------SAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGA 87 (247)
Q Consensus 15 ~~~~~~~~~~p~~~~~~~~~~~~~k~ILVavD~S~~-------s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~ 87 (247)
...++....+|++.++..... .+++||||+|+|+. +..+++||+.++...+++|+++||++.......
T Consensus 112 ~~~vl~~~~~PVlvv~~~~~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---- 186 (290)
T 3mt0_A 112 DWKLLRFAPCPVLMTKTARPW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA---- 186 (290)
T ss_dssp HHHHHHHCSSCEEEECCCSCS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-----------
T ss_pred HHHHHhcCCCCEEEecCCCCC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc----
Confidence 344455667777777644445 89999999999998 999999999999999999999999876432211
Q ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhCCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCcc
Q 025835 88 IEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIP-FKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAA 166 (247)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~ 166 (247)
.+ . ....+..++...+.++.+..+ .+++ +.+++..| ++.+.|+++++++++||||||++|++++
T Consensus 187 ~~--~-~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~~~ 251 (290)
T 3mt0_A 187 DP--T-FQLSETIEARYREACRTFQAE-----------YGFSDEQLHIEEG-PADVLIPRTAQKLDAVVTVIGTVARTGL 251 (290)
T ss_dssp ----C-HHHHHHHHHHHHHHHHHHHHH-----------HTCCTTTEEEEES-CHHHHHHHHHHHHTCSEEEEECCSSCCG
T ss_pred Cc--h-hHHHHHHHHHHHHHHHHHHHH-----------cCCCcceEEEecc-CHHHHHHHHHHhcCCCEEEECCCCCcCC
Confidence 00 0 011122222222222222211 1553 55677777 7999999999999999999999999999
Q ss_pred ccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 167 KKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 167 ~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
.++ ++||++++|+++++||||+||+.
T Consensus 252 ~~~---~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 252 SGA---LIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp GGC---CSCHHHHHHHTTCSSEEEEECCH
T ss_pred cce---ecchHHHHHHhcCCCCEEEECCC
Confidence 999 99999999999999999999853
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.88 E-value=6.2e-22 Score=172.12 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=109.4
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTT 114 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (247)
|+++++|||++|+|+.+..+++||+.+|+..+++|+++||++....... ...... ..+...+.+.+..+ +
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~----~ 73 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT--TLLSPD----ERNAMRKGVINQKT----A 73 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT--TTSCHH----HHHHHHHHHHHHHH----H
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc--cccChh----hHHHHHHHHHHHHH----H
Confidence 6789999999999999999999999999999999999999864321110 000000 11111111111111 1
Q ss_pred hhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 115 KANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 115 ~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.++.+...+...++++++.+...+++.+.|++++++.++||||||+++++.+.++ ++||++.+|+++++|||||||.
T Consensus 74 ~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~---~~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 74 WIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL---IFTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC---BCCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcc---cccccHHHHHhcCCCCEEEecC
Confidence 2222333334569999999983337999999999999999999999999999999 9999999999999999999997
Q ss_pred CCC
Q 025835 195 SDD 197 (247)
Q Consensus 195 ~~~ 197 (247)
...
T Consensus 151 ~~~ 153 (319)
T 3olq_A 151 KEW 153 (319)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=1.5e-21 Score=169.44 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=116.6
Q ss_pred CCccccCCCCCCCCCCCCCC---CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhh
Q 025835 15 ATAVIVQPSSPRFPLSSPTT---GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVS 91 (247)
Q Consensus 15 ~~~~~~~~~~p~~~~~~~~~---~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~ 91 (247)
...++....+|++.++.... ...+++||||+|+|+.+..+++||+.++...+++|+++||++...... ... .
T Consensus 145 ~~~vl~~~~~PVlvv~~~~~~~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~---~ 219 (309)
T 3cis_A 145 SSGLLRHAHCPVVIIHDEDSVMPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE--WPG---I 219 (309)
T ss_dssp HHHHHHHCSSCEEEECTTCCCSCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT--CSS---C
T ss_pred HHHHHHhCCCCEEEEcCCcccCCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC--CCc---c
Confidence 34445556677776655443 456899999999999999999999999999999999999986543211 100 0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccC
Q 025835 92 LEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSK 171 (247)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~ 171 (247)
......+..++.+++.++.+.. . ..++.+++++..| ++.+.|+++++ ++||||||+++++++.++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~--------~--~~~~~~~~~~~~g-~~~~~I~~~a~--~adliV~G~~~~~~~~~~-- 284 (309)
T 3cis_A 220 DWPATQSMAEQVLAERLAGWQE--------R--YPNVAITRVVVRD-QPARQLVQRSE--EAQLVVVGSRGRGGYAGM-- 284 (309)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHH--------H--CTTSCEEEEEESS-CHHHHHHHHHT--TCSEEEEESSCSSCCTTC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--------h--CCCCcEEEEEEcC-CHHHHHHHhhC--CCCEEEECCCCCCCcccc--
Confidence 0011122222233322222111 0 0378888888877 79999999997 899999999999999999
Q ss_pred ccCCCHHHHHhhcCCccEEEEecC
Q 025835 172 SRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 172 ~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
|+||++++|+++++|||||||+.
T Consensus 285 -l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 285 -LVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp -SSCHHHHHHHHHCSSCEEEECC-
T ss_pred -ccCcHHHHHHhcCCCCEEEeCCC
Confidence 99999999999999999999853
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.86 E-value=6.1e-22 Score=170.65 Aligned_cols=145 Identities=22% Similarity=0.156 Sum_probs=108.5
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTT 114 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (247)
++++++|||++|+|+.+..+++||+.+|+..+++|+++||++.........+... ....+..++..++.++
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~----- 89 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDI----DHYIDEMSEKAEEVLP----- 89 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCT----THHHHHHHHHHHHHHH-----
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccH----HHHHHHHHHHHHHHHH-----
Confidence 6789999999999999999999999999999999999999876543211111111 1111122222222222
Q ss_pred hhhhhhhhhhhCCCceEE-EEE-ecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 115 KANDLAQPLVEAQIPFKI-HIV-KDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 115 ~~~~~~~~~~~~~v~v~~-~v~-~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
.+.+.+...|+++++ .+. .| ++.+.| ++++.++||||||+++++.+.++ ++||++++|+++++||||||
T Consensus 90 ---~~~~~~~~~g~~~~~~~v~~~g-~~~~~I--~a~~~~~DliV~G~~g~~~~~~~---~~Gs~~~~vl~~~~~PVlvv 160 (294)
T 3loq_A 90 ---EVAQKIEAAGIKAEVIKPFPAG-DPVVEI--IKASENYSFIAMGSRGASKFKKI---LLGSVSEGVLHDSKVPVYIF 160 (294)
T ss_dssp ---HHHHHHHHTTCEEEECSSCCEE-CHHHHH--HHHHTTSSEEEEECCCCCHHHHH---HHCCHHHHHHHHCSSCEEEE
T ss_pred ---HHHHHHHHcCCCcceeEeeccC-ChhHhe--eeccCCCCEEEEcCCCCccccce---eeccHHHHHHhcCCCCEEEe
Confidence 222233345888888 677 66 799999 99999999999999999999999 99999999999999999999
Q ss_pred ecCCC
Q 025835 193 RFSDD 197 (247)
Q Consensus 193 ~~~~~ 197 (247)
|....
T Consensus 161 ~~~~~ 165 (294)
T 3loq_A 161 KHDMV 165 (294)
T ss_dssp CCCTT
T ss_pred cCccc
Confidence 97753
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.86 E-value=1.5e-21 Score=168.17 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=115.2
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhh
Q 025835 19 IVQPSSPRFPLSSPTT-GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSES 97 (247)
Q Consensus 19 ~~~~~~p~~~~~~~~~-~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~ 97 (247)
+....+|++.++.... ...+++||||+|+|+.+..++++|+.++...+++|+++||++... .
T Consensus 150 l~~~~~PVlvv~~~~~~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------~ 212 (294)
T 3loq_A 150 LHDSKVPVYIFKHDMVVNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------K 212 (294)
T ss_dssp HHHCSSCEEEECCCTTTTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------C
T ss_pred HhcCCCCEEEecCccccCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------H
Confidence 3445567666655443 367899999999999999999999999999999999999976531 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCH
Q 025835 98 EESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSV 177 (247)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSv 177 (247)
+. .+++..+ .+.+.++++++.+..| ++.+.|++++++.++||||||+++++++.++ |+||+
T Consensus 213 ~~---~l~~~~~------------~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~---~~Gs~ 273 (294)
T 3loq_A 213 TA---DLRVMEE------------VIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTM---ILGST 273 (294)
T ss_dssp HH---HHHHHHH------------HHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHH---HHHCH
T ss_pred HH---HHHHHHH------------HHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccce---eeCcH
Confidence 11 1111111 1122388888888877 8999999999999999999999999999999 99999
Q ss_pred HHHHhhcCCccEEEEecCCC
Q 025835 178 SDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 178 s~~vl~~a~~PVlvV~~~~~ 197 (247)
+++|+++++||||+||+.++
T Consensus 274 ~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 274 SESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHHCSSCEEEECSCTT
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 99999999999999998654
No 19
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.86 E-value=1.4e-21 Score=169.81 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=117.5
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCeEEEeecCCh-------HHHHHHHHHHHHhCCC--CCEEEEEEEecCCCccCCCcc
Q 025835 16 TAVIVQPSSPRFPLSSPTTGGAHRKIGIAVDLSD-------ESAFAVKWAVQNYLRP--GDAVILLHVRPTSVLYGADWG 86 (247)
Q Consensus 16 ~~~~~~~~~p~~~~~~~~~~~~~k~ILVavD~S~-------~s~~al~~A~~la~~~--~a~v~llhV~~~~~~~~~~~~ 86 (247)
..++....+|++.++... ...+++||||+|+|. .+..++++|+.++... +++|+++||++...... +.
T Consensus 135 ~~vl~~~~~PVlvv~~~~-~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~ 211 (319)
T 3olq_A 135 WQLLRKCPAPVWMVKDKE-WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AI 211 (319)
T ss_dssp HHHHHHCSSCEEEEESSC-CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CT
T ss_pred HHHHhcCCCCEEEecCcc-cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hc
Confidence 334455667777665433 347899999999999 6899999999999988 99999999997654321 11
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhCCC-ceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCc
Q 025835 87 AIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQI-PFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGA 165 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~ 165 (247)
..+........+..++...+.++.+..+ .++ .+++++..| ++.+.|+++++++++||||||++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~~ 279 (319)
T 3olq_A 212 ELPDFDPNLYNNALRGQHLIAMKELRQK-----------FSIPEEKTHVKEG-LPEQVIPQVCEELNAGIVVLGILGRTG 279 (319)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHHHHHH-----------TTCCGGGEEEEES-CHHHHHHHHHHHTTEEEEEEECCSCCS
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHH-----------hCCCcccEEEecC-CcHHHHHHHHHHhCCCEEEEeccCccC
Confidence 1111111111222233333333332221 144 345667777 799999999999999999999999999
Q ss_pred cccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 166 AKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 166 ~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
+.++ |+||++++|+++++||||+||+..
T Consensus 280 ~~~~---~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 280 LSAA---FLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp THHH---HHHHHHHHHHTTCCSEEEEECCTT
T ss_pred Cccc---cccHHHHHHHhhCCCCEEEECCCC
Confidence 9999 999999999999999999998754
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.86 E-value=3.1e-21 Score=167.44 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=105.6
Q ss_pred CCCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHH
Q 025835 33 TTGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFT 112 (247)
Q Consensus 33 ~~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (247)
+...++++|||++|+|+.+..+++||+.+|+..+++|+++||+++.. .................+..++.+++..+.+
T Consensus 14 ~~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 91 (309)
T 3cis_A 14 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV-ATWLEVPLPPGVLRWQQDHGRHLIDDALKVV- 91 (309)
T ss_dssp ----CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC-CCTTCCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcc-cccccCCCCchhhHHHHHHHHHHHHHHHHHH-
Confidence 34567899999999999999999999999999999999999987322 1111111111110111122222222221111
Q ss_pred HHhhhhhhhhhh-hCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEE
Q 025835 113 TTKANDLAQPLV-EAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIV 191 (247)
Q Consensus 113 ~~~~~~~~~~~~-~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlv 191 (247)
...+. ..++++++.+..| ++.+.|+++++ ++||||||+++++.+.++ ++||++++|+++++|||||
T Consensus 92 -------~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~~DliV~G~~g~~~~~~~---~~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 92 -------EQASLRAGPPTVHSEIVPA-AAVPTLVDMSK--DAVLMVVGCLGSGRWPGR---LLGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp -------HHHCSSSCCSCEEEEEESS-CHHHHHHHHGG--GEEEEEEESSCTTCCTTC---CSCHHHHHHHHHCSSCEEE
T ss_pred -------HHhcccCCCceEEEEEecC-CHHHHHHHHhc--CCCEEEECCCCCcccccc---ccCcHHHHHHHhCCCCEEE
Confidence 10000 1278899888887 79999999996 799999999999999999 9999999999999999999
Q ss_pred EecCCC
Q 025835 192 VRFSDD 197 (247)
Q Consensus 192 V~~~~~ 197 (247)
||....
T Consensus 159 v~~~~~ 164 (309)
T 3cis_A 159 IHDEDS 164 (309)
T ss_dssp ECTTCC
T ss_pred EcCCcc
Confidence 997654
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=5e-21 Score=162.58 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=104.8
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAND 118 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 118 (247)
|+||||+|+|+.+..+++||+.+|+..+++|+++||++.............. ..... ....+...+.......+.++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGA-LTVPV-PVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC--------CH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchH-HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998643211000000000 00000 000000011111111122223
Q ss_pred hhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCC-ccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 119 LAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFG-AAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 119 ~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~-~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
+...+...|+++++++..| ++.+.|+++ +.++||||||+++++ .+.++ ++||++++|+++++|||++||....
T Consensus 79 ~~~~~~~~g~~~~~~~~~g-~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~---~~Gs~~~~v~~~a~~PVlvv~~~~~ 152 (268)
T 3ab8_A 79 VRQSALAAGVAVEAVLEEG-VPHEAILRR--ARAADLLVLGRSGEAHGDGFG---GLGSTADRVLRASPVPVLLAPGEPV 152 (268)
T ss_dssp HHHHHHHTTCCEEEEEEEE-CHHHHHHHH--HTTCSEEEEESSCTTSCTTCC---SCCHHHHHHHHHCSSCEEEECSSCC
T ss_pred HHHHHHhCCCCeEEEEecC-CHHHHHHhh--ccCCCEEEEeccCCCcccccc---ccchhHHHHHHhCCCCEEEECCCCC
Confidence 3333445589999998888 799999999 779999999999998 89999 9999999999999999999997653
No 22
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2.6e-21 Score=166.49 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=106.2
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTT 114 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (247)
|+++++|||++|+|+.+..+++||+.+|+..+++|+++||+++ +..++.+++..+.+
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~--------------------~~~~~~l~~~~~~~--- 60 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR--------------------RDHSAALNDLAQEL--- 60 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS--------------------SCCHHHHHHHHHHH---
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc--------------------HHHHHHHHHHHHHH---
Confidence 5679999999999999999999999999999999999999752 01112222222211
Q ss_pred hhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 115 KANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 115 ~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
...++++++.+..++++.+.|++++++.++||||||+++++.+.++ ++||++.+|+++++||||+||.
T Consensus 61 ---------~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~---~~gs~~~~vl~~~~~PVlvv~~ 128 (290)
T 3mt0_A 61 ---------REEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA---ILTPDDWKLLRFAPCPVLMTKT 128 (290)
T ss_dssp ---------HHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT---SCCHHHHHHHHHCSSCEEEECC
T ss_pred ---------hhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhc---ccCHHHHHHHhcCCCCEEEecC
Confidence 1338999999886668999999999999999999999999999999 9999999999999999999995
Q ss_pred CC
Q 025835 195 SD 196 (247)
Q Consensus 195 ~~ 196 (247)
..
T Consensus 129 ~~ 130 (290)
T 3mt0_A 129 AR 130 (290)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 23
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.84 E-value=3.5e-21 Score=147.60 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=94.0
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe-cC-CCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHH
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR-PT-SVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTT 113 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (247)
.++++|||++|+|+.+..+++||+.+|+..+++|+++||+ +. +..........+ ......+...+..++.++.+ .
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~ 78 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLP--FPPEIKEESKKRIERRLREV-W 78 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCC--CCTHHHHHHHHHHHHHHHHH-H
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCC--CChHHHHHHHHHHHHHHHHH-H
Confidence 4689999999999999999999999999999999999998 53 110000000000 00111122222222222222 1
Q ss_pred HhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 114 TKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 114 ~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
. + .+...+ ++++++..| ++.+.|+++++++++||||||++|+ |++++|+++++|||||||
T Consensus 79 ~----~--~~~~~~-~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 79 E----K--LTGSTE-IPGVEYRIG-PLSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp H----H--HHSCCC-CCCEEEECS-CHHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEECC
T ss_pred H----H--hhccCC-cceEEEEcC-CHHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEeeC
Confidence 1 1 012336 777777777 7999999999999999999999865 789999999999999986
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.78 E-value=9.1e-19 Score=148.58 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=108.1
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhh
Q 025835 12 DRQATAVIVQPSSPRFPLSSPTTGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVS 91 (247)
Q Consensus 12 ~~~~~~~~~~~~~p~~~~~~~~~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~ 91 (247)
++....+....++|++.++.... .+++||||+|+|+.+..++++|..++...+++|+++||++..
T Consensus 130 Gs~~~~v~~~a~~PVlvv~~~~~--~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~------------- 194 (268)
T 3ab8_A 130 GSTADRVLRASPVPVLLAPGEPV--ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP------------- 194 (268)
T ss_dssp CHHHHHHHHHCSSCEEEECSSCC--CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-------------
T ss_pred chhHHHHHHhCCCCEEEECCCCC--CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-------------
Confidence 33444555666778777754433 679999999999999999999999999899999999997531
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccC
Q 025835 92 LEMSESEESQRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSK 171 (247)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~ 171 (247)
+..++.+++..+ .+...|+++++++..| ++.+.|++++++. ||||||+ ++.++
T Consensus 195 ------~~~~~~l~~~~~------------~l~~~~~~~~~~~~~g-~~~~~i~~~a~~~--dliV~G~----~~~~~-- 247 (268)
T 3ab8_A 195 ------ARAEAWALEAEA------------YLRDHGVEASALVLGG-DAADHLLRLQGPG--DLLALGA----PVRRL-- 247 (268)
T ss_dssp ------HHHHHHHHHHHH------------HHHHTTCCEEEEEECS-CHHHHHHHHCCTT--EEEEEEC----CCSCC--
T ss_pred ------HHHHHHHHHHHH------------HHHHcCCceEEEEeCC-ChHHHHHHHHHhC--CEEEECC----ccccc--
Confidence 111222222211 2223488888888777 7999999999887 9999999 57788
Q ss_pred ccCCCHHHHHhhcCCccEEEEe
Q 025835 172 SRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 172 ~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
++||++++|+++++||||+||
T Consensus 248 -~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 248 -VFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp -SSCCHHHHHHHHCSSCEEEEC
T ss_pred -EeccHHHHHHhcCCCCEEEeC
Confidence 999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=93.53 E-value=1.7 Score=32.39 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=82.3
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCC-CEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPG-DAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~-a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
|++|||-+.-.-.+.........+..... ..+.+| |-..+ ...|.. ...+....+++.+...+..
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VL-VPa~~---~~a~~~----e~~~a~~~A~~~l~~sl~a------ 66 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLL-VPAVP---PPGWVY----EENEVRRRAEEEAAAAKRA------ 66 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEE-EEEEC---CCCSCC------CHHHHHHHHHHHHHHHH------
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEE-ecCCC---Cccccc----ChHHHHHHHHHHHHHHHHH------
Confidence 47888888865555555555455554443 555332 21111 111211 1122334455555544443
Q ss_pred hhhhhhhhhCCCceE-EEEEecCChHHHHHHHHHHcC--CCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 117 NDLAQPLVEAQIPFK-IHIVKDHDMKERLCLEVERLG--LSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~-~~v~~g~d~~~~I~~~a~~~~--~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
|...|+++. -.++.+ ++..+|.......+ +|=||+-+..+ ...+| |.-..+.+.=+ ...||+=+
T Consensus 67 ------L~~~G~~a~~G~v~d~-~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~---fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 67 ------LEAQGIPVEEAKAGDI-SPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRW---LRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp ------HHTTTCCCSEEEEEES-SHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHH---HHTTHHHHGGG-GSSCEEEE
T ss_pred ------HHHcCCcccccccCCC-ChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHH---HhccHHHHHHh-cCCCEEEE
Confidence 234489988 888888 69999999999999 99999999865 46677 77778888877 89999865
No 26
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=93.25 E-value=0.35 Score=37.87 Aligned_cols=113 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
+.|||++++-++..+.+++++...|.+ .|.+|+++-.-.-..+ ..... ++.+
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~A~~f---------------i~~~~-------l~~l----- 55 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTNGRKF---------------INGEI-------LKQF----- 55 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTGGGGG---------------SCHHH-------HHHH-----
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcCHHHH---------------hhHHH-------HHHh-----
Confidence 458999999999999998888666655 5788766543111000 00110 1111
Q ss_pred hhhhhhhhhCCCceEEEEEecCC-hHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHD-MKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d-~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
. + ++ ....+ .....+..+ ..+|++|+..-..+.+.+++.++-.+....++....+||+++|
T Consensus 56 ---~------~-~v----~~~~~~~~~~hi~l~--~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 56 ---C------D-NY----YDEFEDPFLNHVDIA--NKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp ---C------S-CE----ECTTTCTTCCHHHHH--HTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred ---c------C-CE----EecCCCCcccccccc--chhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 0 2 11 11111 111234444 3489999998888888888666666777778888899999998
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=91.95 E-value=2.5 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=33.0
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCE-EEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDA-VILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~-v~llhV~ 75 (247)
.++|+|++.|...|..++..+..+....+.+ |.++|+-
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd 62 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFN 62 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEE
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4789999999999999999888877667778 9999984
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=91.90 E-value=0.74 Score=36.01 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=48.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..++..+...+.+.+|+++ .+++.||.|..+...+..+ |.-.+..||+-||....
T Consensus 49 gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv-----------vAa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 49 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------VAAKTNLPVIGVPVQSK 111 (181)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------HHTTCCSCEEEEECCCT
T ss_pred CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh-----------HHhcCCCCEEEEecCCC
Confidence 999999999999888888888765 5789999998765555544 44567999999998654
No 29
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=91.65 E-value=0.68 Score=36.00 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=47.5
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+++ .+++.||.|..+.+.+..+ |.-.+.+||+-||-...
T Consensus 39 gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv-----------vA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 39 GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM-----------LAAKTTVPVLGVPVASK 101 (173)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH-----------HHHHCCSCEEEEEECCT
T ss_pred CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh-----------heecCCCCEEEEEcCCC
Confidence 999999999999888888888766 6789999998765555443 44567999999997654
No 30
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=90.99 E-value=0.49 Score=37.49 Aligned_cols=122 Identities=9% Similarity=0.043 Sum_probs=69.8
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAND 118 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 118 (247)
+||++++-++..+..+++....|.+. |.+|+++-. +.+.+.+......- ...
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T-----------------------~~A~~~i~~e~~~~----~~~ 53 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVIS-----------------------RNAKVVLKEEHSLT----FEE 53 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEEC-----------------------HHHHHHHHHC-----------
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC-----------------------hhHHHHhhHHhCCC----HHH
Confidence 79999999999999999888777665 787776553 33333333311100 000
Q ss_pred hhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcC---CccEEEEec
Q 025835 119 LAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC---VCPVIVVRF 194 (247)
Q Consensus 119 ~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a---~~PVlvV~~ 194 (247)
+.. .+.-.. +....+...-|.--.-...+|++|+..-..+.+.+++.|+-.+....++..+ .+||+++|.
T Consensus 54 l~~-----~l~~~~-v~~~~~~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~Pa 126 (189)
T 2ejb_A 54 VLK-----GLKNVR-IHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLLVR 126 (189)
T ss_dssp CCC-----CCSSEE-EEETTCTTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHH-----HhCCCe-EecCCCCcCCccccccccccCEEEEecCCHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEEEC
Confidence 000 010011 1112233222221111256899999887777788775555555555655555 899999997
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=90.57 E-value=1.3 Score=40.03 Aligned_cols=38 Identities=16% Similarity=-0.049 Sum_probs=34.1
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
..+|+|++.|...|..++..+..+....+.++.++||-
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvd 55 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD 55 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEE
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 47899999999999999999988887778899999995
No 32
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=90.30 E-value=4.7 Score=33.32 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=53.2
Q ss_pred eecCChHHHHHHHHHHHHhCCCCC--EEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 025835 44 AVDLSDESAFAVKWAVQNYLRPGD--AVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQ 121 (247)
Q Consensus 44 avD~S~~s~~al~~A~~la~~~~a--~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (247)
..-.++.+..|+..|++|... +. +|++|.+-+.. ..+.+.+.+.
T Consensus 35 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~---------------------a~~~lr~ala------------ 80 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ---------------------CQETIRTALA------------ 80 (255)
T ss_dssp CEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT---------------------HHHHHHHHHH------------
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh---------------------HHHHHHHHHh------------
Confidence 444688999999999999876 66 89998875321 1122222211
Q ss_pred hhhhCCCceEEEEE-e-----cCC---hHHHHHHHHHHcCCCEEEEeecCCC
Q 025835 122 PLVEAQIPFKIHIV-K-----DHD---MKERLCLEVERLGLSAVIMGSRGFG 164 (247)
Q Consensus 122 ~~~~~~v~v~~~v~-~-----g~d---~~~~I~~~a~~~~~DLIVmGs~g~~ 164 (247)
.|..--+++. . +.+ .+..|...+++.++|+|++|....+
T Consensus 81 ----~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 81 ----MGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp ----HTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred ----cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 1555444443 1 222 3456788888889999999987654
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=89.89 E-value=0.72 Score=35.35 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
|++++..+...+...+.+.+|+++...+.||.+..+.+.+..+ |.-.+.+||+-||.
T Consensus 26 gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv-----------va~~t~~PVIgVP~ 82 (157)
T 2ywx_A 26 GVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV-----------VASLTTKPVIAVPV 82 (157)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH-----------HHTTCSSCEEEEEE
T ss_pred CCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH-----------HHhccCCCEEEecC
Confidence 9999999999999999999999987669999988765555544 45567999999998
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=89.76 E-value=1.4 Score=34.26 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=47.3
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
|++++..+...+...+.+.+|+++ .+++.||.+..+...+..+ |.-.+.+||+-||...
T Consensus 39 Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 100 (174)
T 3kuu_A 39 NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM-----------LAAKTLVPVLGVPVQS 100 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH-----------HHHTCSSCEEEEEECC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 999999999999888888888865 5789999988765555443 5556799999999864
No 35
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=89.67 E-value=3.2 Score=34.27 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=53.1
Q ss_pred eecCChHHHHHHHHHHHHhCCCCC--EEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 025835 44 AVDLSDESAFAVKWAVQNYLRPGD--AVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQ 121 (247)
Q Consensus 44 avD~S~~s~~al~~A~~la~~~~a--~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (247)
..-.++.+..|+..|++|... +. +|++|.+-+.. ..+.+.+.+.
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~---------------------a~~~lr~ala------------ 77 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ---------------------AAETLRTALA------------ 77 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG---------------------GHHHHHHHHH------------
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh---------------------HHHHHHHHHh------------
Confidence 444688999999999999876 66 89988875320 1112222111
Q ss_pred hhhhCCCceEEEEE-e-----cCC---hHHHHHHHHHHcCCCEEEEeecCCC
Q 025835 122 PLVEAQIPFKIHIV-K-----DHD---MKERLCLEVERLGLSAVIMGSRGFG 164 (247)
Q Consensus 122 ~~~~~~v~v~~~v~-~-----g~d---~~~~I~~~a~~~~~DLIVmGs~g~~ 164 (247)
.|..--+++. . +.+ .+..|...+++.++|+|++|....+
T Consensus 78 ----~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 78 ----MGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp ----HTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred ----cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 1555444443 1 212 3456778888889999999987654
No 36
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=89.63 E-value=2.6 Score=35.07 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=53.6
Q ss_pred EeecCChHHHHHHHHHHHHhCCCCC--EEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 025835 43 IAVDLSDESAFAVKWAVQNYLRPGD--AVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLA 120 (247)
Q Consensus 43 VavD~S~~s~~al~~A~~la~~~~a--~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 120 (247)
+..-.++.+..++..|++|....+. +|++|.+-+. ...+.+.+.+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~---------------------~~~~~lr~al------------ 77 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD---------------------RVDESLRKCL------------ 77 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG---------------------GGHHHHHHHH------------
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch---------------------hHHHHHHHHH------------
Confidence 4555789999999999999876666 8998887431 0111222211
Q ss_pred hhhhhCCCceEEEEEec----CC---hHHHHHHHHHHcCCCEEEEeecCCC
Q 025835 121 QPLVEAQIPFKIHIVKD----HD---MKERLCLEVERLGLSAVIMGSRGFG 164 (247)
Q Consensus 121 ~~~~~~~v~v~~~v~~g----~d---~~~~I~~~a~~~~~DLIVmGs~g~~ 164 (247)
..|..--+++... .+ .+..|...+++.++|+|++|....+
T Consensus 78 ----a~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 78 ----AKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp ----HTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred ----hcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 1155533333221 12 3457788888889999999987643
No 37
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=89.27 E-value=1.3 Score=34.38 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCceEEEEEecCChHHHHHHHHH---HcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVE---RLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~---~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
|++++..+...+...+.+.+|++ ..+++.||.+..+...+.. -|.-.+.+||+-||...
T Consensus 33 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg-----------vvA~~t~~PVIgVP~~~ 94 (169)
T 3trh_A 33 GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG-----------TIAAHTLKPVIGVPMAG 94 (169)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH-----------HHHHTCSSCEEEEECCC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH-----------HHHhcCCCCEEEeecCC
Confidence 99999999999888888888865 4678988888865554444 35567799999999764
No 38
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=89.21 E-value=0.91 Score=35.18 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=47.9
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+++ .+++.||.+..+...+..+ |.-.+.+||+-||....
T Consensus 38 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 38 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------VAAKTNLPVIGVPVQSK 100 (170)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHTTCCSCEEEEEECCT
T ss_pred CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 999999999998888899999875 3589999988765555544 45567999999998653
No 39
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=89.01 E-value=2.1 Score=34.46 Aligned_cols=39 Identities=5% Similarity=-0.125 Sum_probs=32.4
Q ss_pred CCeEEEeecC-----ChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 38 HRKIGIAVDL-----SDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 38 ~k~ILVavD~-----S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
|++|||-++- .+.+..+|..|.+|+...|.+|++|-+-+
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~ 46 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGT 46 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 5778988874 67799999999999988888888887753
No 40
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=88.94 E-value=1.4 Score=34.49 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=47.7
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|+++++.+...+...+.+.+|+++ .+++.||.+..+...+..+ |.-.+.+||+-||....
T Consensus 48 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 48 EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM-----------CAAWTRLPVLGVPVESR 110 (182)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 999999999999888999999875 3589999888765555443 45567999999998653
No 41
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=88.84 E-value=1.7 Score=33.57 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCceEEEEEecCChHHHHHHHHHHc---CCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERL---GLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~---~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+++. +++.||.+..+...+..+ |.-.+.+||+-||....
T Consensus 32 gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 32 GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM-----------VAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------HHHTCSSCEEEEECCCT
T ss_pred CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH-----------HHhccCCCEEEeecCcC
Confidence 9999999999988888899998764 689999998765555443 55577999999997653
No 42
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=88.45 E-value=1.7 Score=33.47 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=47.3
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+++ .+++.||.+..+...+..+ |.-.+.+||+-||....
T Consensus 30 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 30 EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM-----------VASLTTLPVIGVPIETK 92 (163)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECCT
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 999999999999888888888865 4689999888765555443 45567999999997654
No 43
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=87.91 E-value=1.7 Score=33.76 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCceEEEEEecCChHHHHHHHH---HHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEV---ERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a---~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+ +..+++.||.+..+...+..+ |.-.+.+||+-||....
T Consensus 34 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 34 DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM-----------VAAATPLPVIGVPVPLG 96 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECCS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 9999999999888777777775 446899999988765555443 45567999999997654
No 44
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=87.72 E-value=0.42 Score=38.04 Aligned_cols=118 Identities=5% Similarity=-0.153 Sum_probs=70.4
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
...++|++++-++..+.++++....|.+ .|.+|.++-. +.+.+.+.... +
T Consensus 6 l~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T-----------------------~~A~~fi~~~~--~---- 55 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMT-----------------------KTAEDLIPAHT--V---- 55 (194)
T ss_dssp GGGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEEC-----------------------HHHHHHSCHHH--H----
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc-----------------------hhHHHHHHHHH--H----
Confidence 3458999999999999999888777654 5887776543 22222221110 0
Q ss_pred hhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
..+. +. +-.......+.... +.++ ..+|++|+..-..+.+.+++.|+-.+....++....+||+++|.
T Consensus 56 -~~l~------~~-v~~~~~~~~~~~~h-i~l~--~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pa 123 (194)
T 1p3y_1 56 -SYFC------DH-VYSEHGENGKRHSH-VEIG--RWADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPN 123 (194)
T ss_dssp -GGGS------SE-EECTTCSSSCCCCH-HHHH--HHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEEC
T ss_pred -HHhc------CC-EeccccccCCCcCc-cccc--ccCCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEEC
Confidence 0000 11 00000000001111 1222 23799999988888888886666667777777778999999996
No 45
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=86.41 E-value=1.6 Score=33.50 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=46.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHHc----CCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERL----GLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~----~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
|++++..+...+...+.+.+|+++. +++.||.+..+...+..+ |.-.+.+||+-||...
T Consensus 29 gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 91 (159)
T 3rg8_A 29 GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-----------VDGFVKGATIACPPPS 91 (159)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-----------HHHHSSSCEEECCCCC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 9999999999988888888887642 589999998655554443 4556799999999763
No 46
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=86.07 E-value=2.3 Score=33.33 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCceEEEEEecCChHHHHHHHHHH---cCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVER---LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~---~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
|++++..+...+...+.+.+|+++ .+++.||.+..+.+.+..+ |.-.+.+||+-||....
T Consensus 40 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 40 GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM-----------VASITHLPVIGVPVKTS 102 (183)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH-----------HHhccCCCEEEeeCCCC
Confidence 999999999998888888888875 4689999888765555443 45567999999998663
No 47
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=82.34 E-value=18 Score=30.45 Aligned_cols=126 Identities=11% Similarity=0.078 Sum_probs=77.5
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
-.-+|||++.........++++..+.. ...-++++++.+.... +.+.+.. +.+.+
T Consensus 19 WrP~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~-------------~~l~~ql-~~l~~---------- 73 (294)
T 3g40_A 19 WKANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDK-------------ENLLSQL-PSISE---------- 73 (294)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CT-------------TCHHHHH-HHHHH----------
T ss_pred CCCcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCc-------------cHHHHHH-HHHHH----------
Confidence 456899999888899999999999888 4577999998643210 0001111 22222
Q ss_pred hhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHc-----CCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEE
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERL-----GLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIV 191 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~-----~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlv 191 (247)
.+.+.++..-+.++...++...+...++.+ .++.|+||-..... ++- -+..+..+ +++...-|++
T Consensus 74 -----~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~---~y~~~i~~-~~~~~~nVli 143 (294)
T 3g40_A 74 -----GFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDE---EIREIIRK-ASMYRMGVLL 143 (294)
T ss_dssp -----HHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHH---HHHHHHHH-HHHTTCEEEE
T ss_pred -----HHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhH---HHHHHHHH-HHHhCceEEE
Confidence 222348998899998888999999998887 57899999764322 211 12333333 3345899999
Q ss_pred EecCCC
Q 025835 192 VRFSDD 197 (247)
Q Consensus 192 V~~~~~ 197 (247)
++....
T Consensus 144 l~~~~~ 149 (294)
T 3g40_A 144 FSKHPQ 149 (294)
T ss_dssp EECCTT
T ss_pred EecCCc
Confidence 975443
No 48
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=82.06 E-value=0.49 Score=38.17 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=32.0
Q ss_pred CCEEEEeecCCCccccccCccCCCHHHHHhhcC--CccEEEEec
Q 025835 153 LSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC--VCPVIVVRF 194 (247)
Q Consensus 153 ~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a--~~PVlvV~~ 194 (247)
+|++|+..-..+.+.+++.++-.+....+++.+ .+||+++|.
T Consensus 97 aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPa 140 (209)
T 1mvl_A 97 ADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPA 140 (209)
T ss_dssp CSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEEC
Confidence 699999988888888875555555555555664 699999996
No 49
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=81.61 E-value=5.8 Score=33.94 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
+.+|+|++.+...|...|..+..+....+..|.++|+-
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 56899999999999999999988876555678888883
No 50
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=81.09 E-value=7.9 Score=34.86 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+--....||..|+..+...+..|..|+++++.... . ...-...+.+. +.++.+.|.+
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~-----------~~~r~~Fl~~s--------L~~L~~~L~~ 103 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---A-----------GIRQYEFMLKG--------LQELEVSLSR 103 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---S-----------CHHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---c-----------CHHHHHHHHHH--------HHHHHHHHHH
Confidence 666667788889988776567789999998764211 0 01111122222 2333334444
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 126 AQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.|+++.+ ..| ++.+.|.+++++++++.|+.-.. .....+ ..-..+.....|+|..+..
T Consensus 104 ~G~~L~v--~~g-~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~-------~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 104 KKIPSFF--LRG-DPGEKISRFVKDYNAGTLVTDFS-PLRIKN-------QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp TTCCEEE--EES-CHHHHHHHHHHHTTCSEEEEECC-CSHHHH-------HHHHHHHHHCCSCEEEECC
T ss_pred cCCcEEE--EeC-CHHHHHHHHHHHcCCCEEEEecc-cchhHH-------HHHHHHHHHcCCEEEEEeC
Confidence 4777544 456 79999999999999999998643 222211 1234444445888877754
No 51
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=79.45 E-value=3.4 Score=33.12 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=34.9
Q ss_pred HcCCCEEEEeecCCCccccccCccCCCHHHH---HhhcCCccEEEEecCCCC
Q 025835 150 RLGLSAVIMGSRGFGAAKKSSKSRLGSVSDY---CVHHCVCPVIVVRFSDDK 198 (247)
Q Consensus 150 ~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~---vl~~a~~PVlvV~~~~~~ 198 (247)
...+|++|+..-..+.+.+++.|+-.+.... +.-...+||+++|.-...
T Consensus 82 s~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaPamn~~ 133 (207)
T 3mcu_A 82 KIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDA 133 (207)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred chhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEECCChh
Confidence 4568999999887778888765554454444 444578999999975443
No 52
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=78.26 E-value=8.6 Score=32.41 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=71.8
Q ss_pred CCCCCCeEEEe-------ec--C-ChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHH
Q 025835 34 TGGAHRKIGIA-------VD--L-SDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRK 103 (247)
Q Consensus 34 ~~~~~k~ILVa-------vD--~-S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
..+.+++|=|= +| + ..+..-++-.|-.|....+++|.|+.|++. +...+.
T Consensus 151 ~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d--------------------e~a~~~ 210 (294)
T 3g40_A 151 GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT--------------------AIQAQA 210 (294)
T ss_dssp TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS--------------------HHHHHH
T ss_pred CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC--------------------HHHHHH
Confidence 34567787777 32 1 223344444444444456999999999764 333344
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh
Q 025835 104 LEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH 183 (247)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~ 183 (247)
.++.++.+.+.. .+..+..++. . ....|+..+ -++||+++|-.....+ ...++++.
T Consensus 211 a~~~l~~Lv~~~-----------Ri~a~~~vv~-~-~F~~il~~s--~~ADL~flGl~~~~df---------~~~~~~~~ 266 (294)
T 3g40_A 211 AENFLQSLAELA-----------RIPNVKMQVL-R-ENPIKSSKL--PFASLHIFSLDPNPDL---------DLARHLME 266 (294)
T ss_dssp HHHHHHHHHHHH-----------TCCSCEEEEE-S-SCTTTSSSC--CCCSEEEEECCSSCCH---------HHHHHHHH
T ss_pred HHHHHHHHHHHh-----------cCCceEEEec-C-chHHHHhhC--cCCCEEEEcCCCCCcH---------HHHHHHHH
Confidence 444444333221 3333333433 3 444455444 5699999998654433 34688899
Q ss_pred cCCccEEEEecCCCCC
Q 025835 184 HCVCPVIVVRFSDDKD 199 (247)
Q Consensus 184 ~a~~PVlvV~~~~~~~ 199 (247)
.+...++.++....+.
T Consensus 267 ~~~ssc~f~~dsg~e~ 282 (294)
T 3g40_A 267 KAGSSCIFALDSGEEN 282 (294)
T ss_dssp HHTSEEEEEECCSCCC
T ss_pred hcCCeEEEEecCchhH
Confidence 9999999998665543
No 53
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=75.07 E-value=27 Score=28.48 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=30.1
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
+.+|+|++.+...|...+..+..+... +..+.++|+-
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEec
Confidence 458999999999999999988887654 5577888873
No 54
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=73.40 E-value=9 Score=34.90 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=60.6
Q ss_pred CeEEEee--cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 39 RKIGIAV--DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 39 k~ILVav--D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
+.+|+=+ |+.-....||.+|+..+...+..|+.|+++++...+. .. ...-...+.+ .+
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~-~~-----------~~~r~~FL~~--------sL 97 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL-SA-----------RRRQLGFLLR--------GL 97 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-GC-----------CHHHHHHHHH--------HH
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc-CC-----------CHHHHHHHHH--------HH
Confidence 3444444 7777888999999998876678899999987642110 00 0111122222 23
Q ss_pred hhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEE
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIM 158 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVm 158 (247)
.++.+.|.+.|+++ .+..| ++.+. .+++++++++.|+.
T Consensus 98 ~dL~~~L~~lG~~L--~v~~G-~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 98 RRLAADAAARHLPF--FLFTG-GPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HHHHHHHHHTTCCE--EEESS-CTTHH-HHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCce--EEEec-ChHHH-HHHHHhcCCCEEEe
Confidence 33333344446664 45567 68888 99999999999997
No 55
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=73.18 E-value=6.5 Score=27.41 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCC-----CccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGF-----GAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~-----~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
...+.|.+++++++++.||+|-.-. +...+ ..-..++.+-.. ..||..+-.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~----~~~~f~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAG----KVLPLVEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSS----TTHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHH----HHHHHHHHHhcC-CCCEEEECC
Confidence 3567899999999999999994321 11111 123456777766 899988853
No 56
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=71.22 E-value=57 Score=29.17 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
...++|+|++.+...|..++.|+.+. |.+|+.+|+.
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd 43 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTAN 43 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEE
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 44689999999999999999998763 7899999985
No 57
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=70.70 E-value=22 Score=32.56 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=72.2
Q ss_pred eEEEee--cCChHHHHHHHHHHHHhCC--CCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 40 KIGIAV--DLSDESAFAVKWAVQNYLR--PGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 40 ~ILVav--D~S~~s~~al~~A~~la~~--~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
.+|+=+ |+--....||..|+..+.. .+..|..|+++++........ -..-...+.+.+
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~-----------~~~r~~Fl~~sL------- 91 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQV-----------GANRWRFLQQTL------- 91 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTS-----------CHHHHHHHHHHH-------
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCC-----------CHHHHHHHHHHH-------
Confidence 335444 7777778889999887654 466799999987643211000 011112222222
Q ss_pred hhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.++.+.|.+.|+++.+ ..| ++.+.|.+++++++++.|+.-.. .+..... .-.....++....|+|..+..
T Consensus 92 -~~L~~~L~~~G~~L~v--~~g-~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~----rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 92 -EDLDNQLRKLNSRLFV--VRG-KPAEVFPRIFKSWRVEMLTFETD-IEPYSVT----RDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp -HHHHHHHHHTTCCCEE--EES-CHHHHHHHHHHHTTEEEEEEECC-CSHHHHH----HHHHHHHHHHHHTCEEEEECC
T ss_pred -HHHHHHHHHCCCeEEE--EeC-CHHHHHHHHHHHcCCCEEEEecC-cCHHHHH----HHHHHHHHHHHcCCEEEEecC
Confidence 2223333344776544 456 79999999999999998888643 2333221 112233444445677766654
No 58
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=69.19 E-value=45 Score=29.40 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
..++|+|++.+...|..++.|+.+. +.+|+.+|+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd 38 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLAN 38 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEE
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 3579999999999999999998763 6789999985
No 59
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=68.65 E-value=39 Score=26.18 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
.++|+|++.+...|..++.++.+. +.+|..+|+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~ 37 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHY 37 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEES
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeC
Confidence 478999999999999998887764 36788888853
No 60
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=67.98 E-value=7.4 Score=31.12 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.8
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...|+|+|++-++..+.++++..-.|.+ .|.+|+++-.
T Consensus 2 ~~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 2 SGPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp CSCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 3468999999999999999998877766 4888777654
No 61
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=66.43 E-value=5.3 Score=31.19 Aligned_cols=115 Identities=8% Similarity=-0.053 Sum_probs=69.9
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
+++||++++-++..+.++++....|.+ .|.+|.++-.-.-..+. . ... +
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~~fi-------~--------~~~-------l-------- 49 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFI-------N--------TDV-------L-------- 49 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGGGGGTS-------C--------GGG-------G--------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHHHHH-------H--------HHH-------H--------
Confidence 468999999999999999988777755 47877766532111100 0 000 0
Q ss_pred hhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
..+. +. + .-..+...... .+.+ ..+|++|+..-..+.+.+++.|+-.+....++....+||+++|.
T Consensus 50 ~~l~------~~-~--~d~~~~~~~~h-i~l~--~~aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvlaPa 115 (181)
T 1g63_A 50 KLFC------DN-L--YDEIKDPLLNH-INIV--ENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPN 115 (181)
T ss_dssp GGTS------SC-E--ECTTTCTTCCH-HHHH--HTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEEC
T ss_pred HHHh------CC-c--ccccCCCCCcc-cccc--ccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEEeC
Confidence 0000 11 1 00001000111 1122 45899999988888888886666667777777778999999994
No 62
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=66.32 E-value=5.5 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEE
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAV 156 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLI 156 (247)
.-.+..+++.+-|+.+.|++|+++.++|-+
T Consensus 9 kkkvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 9 KKKVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred cceeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 345677877777899999999999887743
No 63
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=65.33 E-value=32 Score=30.42 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=33.8
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCC-CCCEEEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLR-PGDAVILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~-~~a~v~llhV~ 75 (247)
..+|+|++.|...|...+..+..+... .+.+|.++||-
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 478999999999999999999888776 78899999994
No 64
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=64.85 E-value=11 Score=33.49 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=43.5
Q ss_pred hhCCCceEEEEEecCChHHHHHHHHHH---cCC-CEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 124 VEAQIPFKIHIVKDHDMKERLCLEVER---LGL-SAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 124 ~~~~v~v~~~v~~g~d~~~~I~~~a~~---~~~-DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
...|+++++.+...+...+.+.+++++ .++ +.||.|..+.+.+..+ |.-.+.+||+-||..
T Consensus 289 ~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv-----------va~~t~~PVIgvP~~ 353 (425)
T 2h31_A 289 GNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV-----------MSGNTAYPVISCPPL 353 (425)
T ss_dssp HHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH-----------HHHHCSSCEEECCCC
T ss_pred HHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH-----------HhccCCCCEEEeeCc
Confidence 344899999998888777777777653 457 5777777654444443 455679999999974
No 65
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=64.46 E-value=9 Score=35.17 Aligned_cols=92 Identities=15% Similarity=0.055 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+.-....||..|+..+. .+..|..|+|+++........ ...-...+.+. +.++.+.|.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~-----------~~~r~~Fl~~s--------L~~L~~~L~~ 72 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNV-----------GYNRMRFLLDS--------LQDIDDQLQA 72 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTC-----------CHHHHHHHHHH--------HHHHHHHGGG
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCC-----------CHHHHHHHHHH--------HHHHHHHHHH
Confidence 666666677888776654 455899999987643211000 01112222222 3333334444
Q ss_pred C---CCceEEEEEecCChHHHHHHHHHHcCCCEEEEee
Q 025835 126 A---QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGS 160 (247)
Q Consensus 126 ~---~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs 160 (247)
. |++. .+..| ++.+.|.+++++++++.|+.-.
T Consensus 73 ~~~~G~~L--~v~~G-~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 73 ATDGRGRL--LVFEG-EPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp SCSSSSCC--EEEES-CHHHHHHHHHHHHCEEEECEEC
T ss_pred hhcCCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEcc
Confidence 4 5554 44567 7999999999999999998643
No 66
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=63.48 E-value=26 Score=29.51 Aligned_cols=95 Identities=6% Similarity=0.067 Sum_probs=55.5
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhC------------------CCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHH
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYL------------------RPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEES 100 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~------------------~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (247)
.+|+|++.|...|.-.+..+...+. ..+..+.++|+-.... ..+.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~-----------------fpet 116 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET-----------------FPTL 116 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC-----------------CHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC-----------------CHHH
Confidence 5899999999999999988776531 1245677888742110 1222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhCCCceEEEEEe---cCChHHHHHHHHHHc-CCCEEEEeecCCCc
Q 025835 101 QRKLEDDFDQFTTTKANDLAQPLVEAQIPFKIHIVK---DHDMKERLCLEVERL-GLSAVIMGSRGFGA 165 (247)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~---g~d~~~~I~~~a~~~-~~DLIVmGs~g~~~ 165 (247)
.+.+++..+.+ ++++.+.... +....+.+.++++.. ..+.|++|.|.-..
T Consensus 117 ~~fv~~~~~~y---------------gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds 170 (306)
T 2wsi_A 117 ENFVLETSERY---------------CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDP 170 (306)
T ss_dssp HHHHHHHHHHT---------------TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSS
T ss_pred HHHHHHHHHHc---------------CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccc
Confidence 22332222211 4444322111 124677788888774 68899999986543
No 67
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=62.80 E-value=52 Score=25.60 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=27.1
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
.+|+|++.|...|...+..+..+. .+|.++|+-
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd 77 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTD 77 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEee
Confidence 589999999999999888887763 357788874
No 68
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=61.05 E-value=22 Score=31.95 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=51.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+.-....||.+|+.. ..+ .|..|+++++...... .....-...+. +.+.++.+.|.+
T Consensus 10 DLRl~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~-----------~~~~~r~~fl~--------~sL~~L~~~L~~ 67 (471)
T 1dnp_A 10 DLRLHDNLALAAACRN--SSA-RVLALYIATPRQWATH-----------NMSPRQAELIN--------AQLNGLQIALAE 67 (471)
T ss_dssp CCCSTTCHHHHHHSSS--TTS-EEEEEEEECHHHHHHT-----------TCCHHHHHHHH--------HHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHhC--CCC-CEEEEEEECchhhccC-----------CCCHHHHHHHH--------HHHHHHHHHHHH
Confidence 4444455666666642 133 8999998764211000 00011111222 223333334445
Q ss_pred CCCceEEEEE--ecCChHHHHHHHHHHcCCCEEEEeec
Q 025835 126 AQIPFKIHIV--KDHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 126 ~~v~v~~~v~--~g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
.|+++.+..+ .| ++.+.|.+++++++++.|+.-..
T Consensus 68 ~G~~L~v~~~~~~g-~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 68 KGIPLLFREVDDFV-ASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp TTCCEEEEECSSHH-HHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCeEEEEEccCCC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 5777655433 45 79999999999999999888543
No 69
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=57.98 E-value=58 Score=28.53 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
+...+++|++.|...|..++.++.. .|.+|..+|+..
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 3458999999999999988888765 378899999853
No 70
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=57.04 E-value=87 Score=27.04 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
..++|+|++.+-..|..++..+.+ .+.+|+.+|+..
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~ 43 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKN 43 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEC
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEEC
Confidence 357999999999999988877765 378899999853
No 71
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=56.65 E-value=42 Score=26.74 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHH
Q 025835 34 TGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTT 113 (247)
Q Consensus 34 ~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (247)
++...+||.|-+.++.....++-.++. ..+....++-|+...... .. ++.
T Consensus 4 ~~~~~~ri~vl~SG~gsnl~all~~~~---~~~~~~~I~~Vis~~~~a-----------------~~---l~~------- 53 (215)
T 3kcq_A 4 SMKKELRVGVLISGRGSNLEALAKAFS---TEESSVVISCVISNNAEA-----------------RG---LLI------- 53 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHTC---CC-CSEEEEEEEESCTTC-----------------TH---HHH-------
T ss_pred CCCCCCEEEEEEECCcHHHHHHHHHHH---cCCCCcEEEEEEeCCcch-----------------HH---HHH-------
Confidence 345568999999999888777776652 222234455555432100 00 110
Q ss_pred HhhhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecC
Q 025835 114 TKANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 114 ~~~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
..+.|+++...-.... ....+++..+++++|+||+..-+
T Consensus 54 ---------A~~~gIp~~~~~~~~~-~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 54 ---------AQSYGIPTFVVKRKPL-DIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp ---------HHHTTCCEEECCBTTB-CHHHHHHHHHHTTCSEEEESSCC
T ss_pred ---------HHHcCCCEEEeCcccC-ChHHHHHHHHHhCCCEEEEeCCc
Confidence 0122777654311111 13778999999999999998653
No 72
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=55.53 E-value=40 Score=29.63 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=62.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+--....||..|+.. + .|..|+++++.... . ...-...+.+ .+.++.+.|.+
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~-------------~-~~~r~~fl~~--------sL~~l~~~L~~ 63 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNLK-------------T-TPRRRAWFLE--------NVRALREAYRA 63 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHHS-------------S-CHHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCcccc-------------C-CHHHHHHHHH--------HHHHHHHHHHH
Confidence 5555566677777642 2 68888887542110 0 0111112222 23333334444
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 126 AQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.|+++.+ ..| ++.+.|.+++++++++.|+.-.. ......- .-..|...+.|+|..+..
T Consensus 64 ~g~~l~~--~~g-~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~-------rd~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 64 RGGALWV--LEG-LPWEKVPEAARRLKAKAVYALTS-HTPYGRY-------RDGRVREALPVPLHLLPA 121 (420)
T ss_dssp TTCCEEE--EES-CHHHHHHHHHHHTTCSEEEEECC-CSHHHHH-------HHHHHHHHCSSCEEEECC
T ss_pred CCCeEEE--EeC-CHHHHHHHHHHHcCCCEEEEecc-cChhHHH-------HHHHHHHHcCCeEEEeCC
Confidence 5777544 456 79999999999999999988643 3333222 123333333777777754
No 73
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=55.05 E-value=1e+02 Score=26.87 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
++|+|++.+...|..++.|+.+.. +..|+.+|+-
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd 34 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTAD 34 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEE
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEe
Confidence 479999999999999999987643 5789999985
No 74
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=54.63 E-value=4.8 Score=31.78 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcC--CCEEEEeecCCCccccccCccCCCHHHHHh-hcCCccEEEEec
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLG--LSAVIMGSRGFGAAKKSSKSRLGSVSDYCV-HHCVCPVIVVRF 194 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~--~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl-~~a~~PVlvV~~ 194 (247)
|+++.... + +. +-.+.++.+ +|+||+|..+-........ ..|+..-.++ ++..+||+|+-+
T Consensus 30 gI~vtlI~--D-sa---~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 30 KIPSTLIT--D-SS---IAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp TCCBEEBC--G-GG---HHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEe--c-hH---HHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 88877543 2 12 333344556 9999999976432222200 2476555444 556899999854
No 75
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=54.47 E-value=62 Score=25.74 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=50.2
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
.++.||+|-+.++.....++-.+.. ...+++|.+ |+..+.. .. ++.
T Consensus 10 ~~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~--Vis~~~a------------------~~---~~~--------- 55 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRSLLDAAV--GDYPARVVA--VGVDREC------------------RA---AEI--------- 55 (215)
T ss_dssp CSSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEE--EEESSCC------------------HH---HHH---------
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEE--EEeCCch------------------HH---HHH---------
Confidence 4457899999998888877776652 234455544 4433210 00 111
Q ss_pred hhhhhhhhhhCCCceEEEEEecC-C---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDH-D---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~-d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
..+.|+++...-.... + ...++++..+++++|+||+..-+
T Consensus 56 -------A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 56 -------AAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp -------HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred -------HHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 1122777654421111 1 14578888999999999998654
No 76
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=52.46 E-value=75 Score=28.60 Aligned_cols=118 Identities=19% Similarity=0.083 Sum_probs=66.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+--....||..|+.. + .|..|+++++........ ....+..+.+. +.++.+.|.+
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~-----------~~~~~~fl~~s--------L~~L~~~L~~ 76 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHP-----------GRVSRWWLKNS--------LAQLDSSLRS 76 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCC-----------CHHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCc-----------chHHHHHHHHH--------HHHHHHHHHH
Confidence 7777777888888874 2 567788876532110000 00111122222 3333334444
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 126 AQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.|+++. +..++++.+.|.+++++++++.|+.-.. ....... . -......+....|+|..+..
T Consensus 77 ~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~---r-d~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 77 LGTCLI--TKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLV---R-DHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp TTCCEE--EEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHH---H-HHHHHHHHHTTTCEEEEECC
T ss_pred CCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHH---H-HHHHHHHHHHcCcEEEEECC
Confidence 577754 4454579999999999999999988643 3333222 1 12234445556788777764
No 77
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=51.41 E-value=15 Score=32.14 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=37.6
Q ss_pred hCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHH-hhcCCccEEEEec
Q 025835 125 EAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYC-VHHCVCPVIVVRF 194 (247)
Q Consensus 125 ~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~v-l~~a~~PVlvV~~ 194 (247)
+.|+++.... + +. +-.+.++..+|+||+|...-........ ..|+..-.+ .++..+|++|+-+
T Consensus 235 ~~GIpvtlI~--D-sa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 235 QEDIPCTLIC--D-GA---ASSLMLNRKIDAVVVGADRICQNGDTAN-KIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HTTCCEEEEC--G-GG---HHHHHHHSCCCEEEECCSEECTTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HcCCCEEEEe--h-hH---HHHHhhcCCCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEeCC
Confidence 4488876543 3 22 3334456779999999985432222200 247655544 5667899999854
No 78
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=51.26 E-value=24 Score=32.36 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=53.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCC----CcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGA----DWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQ 121 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (247)
|+.-....||..|+. .+..|+.|+|+++...... .++... .-..-...+.+.+. ++.+
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~------~g~~r~~Fl~~sL~--------~L~~ 75 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSR------AGVNRIRFLLESLK--------DLDS 75 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSS------CBHHHHHHHHHHHH--------HHHH
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhccccccccccccc------CCHHHHHHHHHHHH--------HHHH
Confidence 777677778888764 3567999999865321100 000000 00111222222222 2223
Q ss_pred hhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeec
Q 025835 122 PLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 122 ~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
.|.+.|+++- +..| ++.+.|.+++++++++.|+.-..
T Consensus 76 ~L~~~G~~L~--v~~G-~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 76 SLKKLGSRLL--VFKG-EPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHTTCCCE--EEES-CHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHcCCceE--EEEC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 3334466644 4456 79999999999999999888643
No 79
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=51.18 E-value=63 Score=23.39 Aligned_cols=60 Identities=8% Similarity=-0.119 Sum_probs=38.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcC--CccEEEEe
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC--VCPVIVVR 193 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a--~~PVlvV~ 193 (247)
|+++... ...-+.+.|++.++++++|+|.+.+........ +..+.+.+-... .++|++--
T Consensus 31 G~~Vi~l--G~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 31 GFNVVNI--GVLSPQELFIKAAIETKADAILVSSLYGQGEID-----CKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp TCEEEEE--EEEECHHHHHHHHHHHTCSEEEEEECSSTHHHH-----HTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCEEEEC--CCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHH-----HHHHHHHHHhcCCCCCEEEEEC
Confidence 6665433 222488899999999999999999876444332 345555554432 36665543
No 80
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=50.78 E-value=1.4e+02 Score=26.69 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=55.9
Q ss_pred eEEEee--cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhh
Q 025835 40 KIGIAV--DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAN 117 (247)
Q Consensus 40 ~ILVav--D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 117 (247)
.+|+=+ |+--....||..|+. .+..|..|+++++........+... ....-...+.+.++
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~------~~~~r~~Fl~~sL~-------- 68 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAK------TGPWRSNFLQQSVQ-------- 68 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBS------SCHHHHHHHHHHHH--------
T ss_pred cEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCC------CCHHHHHHHHHHHH--------
Confidence 344443 666677778888875 2457888888865432110000000 00111122222222
Q ss_pred hhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeec
Q 025835 118 DLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 118 ~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
++.+.|.+.|+++.+ ..| ++.+.|.+++++++++.|+.-..
T Consensus 69 ~L~~~L~~~G~~L~v--~~g-~~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 69 NLAESLQKVGNKLLV--TTG-LPEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHHHTTCCEEE--EES-CHHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHCCCcEEE--EEC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 222333344776544 456 79999999999999998887743
No 81
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=50.09 E-value=10 Score=28.12 Aligned_cols=56 Identities=7% Similarity=-0.072 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeecC-CCcccc-ccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 140 MKERLCLEVERLGLSAVIMGSRG-FGAAKK-SSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 140 ~~~~I~~~a~~~~~DLIVmGs~g-~~~~~~-~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
..+.|.+++++++++.||+|-.- .++... .+. ..-..++.+-....+||..+-..-
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~-~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA-RARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH-HHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH-HHHHHHHHHHHHhCCCEEEEcCCc
Confidence 57889999999999999999541 111111 000 112345566555679999996533
No 82
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=49.77 E-value=84 Score=24.80 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=49.9
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
|..+||.|-+.++.....++-.++.- ...+++| +-|+...... .. ++.
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~-~~l~~~I--~~Visn~~~a-----------------~~---l~~--------- 52 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQA-PGFPAEI--VAVFSDKAEA-----------------GG---LAK--------- 52 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTS-TTCSEEE--EEEEESCTTC-----------------TH---HHH---------
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHc-CCCCcEE--EEEEECCccc-----------------HH---HHH---------
Confidence 44578999999998888887776632 1223444 4454321100 00 110
Q ss_pred hhhhhhhhhhCCCceEEEEEecC-C---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDH-D---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~-d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
..+.|+++...-.... + ..+.+++..+++++|+||+..-+
T Consensus 53 -------A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 53 -------AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -------HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -------HHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 0122777654321111 1 23678999999999999998643
No 83
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=49.46 E-value=25 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
..+.++|+|++.+.-.|..++.|+.+ .|.+|+.+++.
T Consensus 11 ~~~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d 47 (421)
T 1vl2_A 11 HHMKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVAN 47 (421)
T ss_dssp ---CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEE
T ss_pred ccccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEE
Confidence 45678899999999999999999865 27889888874
No 84
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=49.24 E-value=1.5e+02 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=28.5
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
++|+|++.+...|..++..+.+. +.+|+.+|+-
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd 242 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVD 242 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEe
Confidence 79999999999999888887765 6889999984
No 85
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=48.63 E-value=26 Score=27.59 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=66.4
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAND 118 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 118 (247)
+||++++-+|..+.++++..-.|.+..|.+|+++-. +.+.+.+......-... ...
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T-----------------------~~A~~fi~~~tg~~v~~-~~~ 56 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMS-----------------------KWAKTTIELETPYSARD-VAA 56 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC-----------------------HHHHHHHHHHSSCCHHH-HHH
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC-----------------------chHHHHhHHHHCCCHHH-HHH
Confidence 489999999999999998888876644888877653 22222222110000000 000
Q ss_pred hhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHh---hcCCccEEEEec
Q 025835 119 LAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCV---HHCVCPVIVVRF 194 (247)
Q Consensus 119 ~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl---~~a~~PVlvV~~ 194 (247)
+. + . +....+...-+.. -...+|++|+..-..+.+.+++.|+-.+.....+ -...+||+++|.
T Consensus 57 l~------~---~--~~~~~~l~api~s--gs~~aD~mvIaPaTanTlAkiA~GiaDnLlt~aa~v~L~~~~plvl~Pa 122 (197)
T 1sbz_A 57 LA------D---F--SHNPADQAATISS--GSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR 122 (197)
T ss_dssp TS------S---E--EECTTCTTSGGGS--TTSCCSEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEEC
T ss_pred hc------C---c--ccCchhhcccccC--CCcccCEEEEecCCHhHHHHHHccccccHHHHHHHHHHhcCCCEEEEEC
Confidence 00 1 1 1111122211111 0146899999988777777775554444444433 445799999998
No 86
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=48.16 E-value=1e+02 Score=24.42 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhh
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAN 117 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 117 (247)
|+||+|-+.++-....+|-.+...- ..+++|.+|-. .... .. ..+
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~-~l~~eI~~Vis--n~~~-----------------a~----v~~----------- 46 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAG-QLPCEVALLIT--DKPG-----------------AK----VVE----------- 46 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTT-CCSSEEEEEEE--SCSS-----------------SH----HHH-----------
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcC-CCCcEEEEEEE--CCCC-----------------cH----HHH-----------
Confidence 4789999999888888888776532 34566655443 2110 00 000
Q ss_pred hhhhhhhhCCCceEEEEEecC-C---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 118 DLAQPLVEAQIPFKIHIVKDH-D---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 118 ~~~~~~~~~~v~v~~~v~~g~-d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
...+.|+++...-.... + -...+++..+++++|+||+..-+
T Consensus 47 ----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 47 ----RVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp ----HHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred ----HHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 01122777643221111 1 13578889999999999998653
No 87
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=47.42 E-value=16 Score=31.97 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=37.0
Q ss_pred hhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHH-HhhcCCccEEEEec
Q 025835 124 VEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDY-CVHHCVCPVIVVRF 194 (247)
Q Consensus 124 ~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~-vl~~a~~PVlvV~~ 194 (247)
.+.|+++.... + +. +-.+.++..+|+||+|...-........ ..|+..-. +.++..+|++|+-+
T Consensus 230 ~~~GIpvtlI~--D-sa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 230 MQGGIDVTLIT--D-SM---AAHTMKEKQISAVIVGADRIAKNGDTAN-KIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HTTTCEEEEEC--G-GG---HHHHHHHTTCCEEEECCSEEETTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHcCCCEEEEe--h-hH---HHHHhhhcCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 34488776443 3 22 3333445679999999975422221100 24765544 45667899999844
No 88
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=47.37 E-value=26 Score=27.39 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=28.3
Q ss_pred CCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 35 GGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 35 ~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
+|.+++|+|++.+...|..++.++.. .+.+|..+|+..
T Consensus 3 ~m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~ 40 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINF 40 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEEC
T ss_pred cccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeC
Confidence 45678999999999999888866553 467888898853
No 89
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=46.84 E-value=21 Score=31.08 Aligned_cols=27 Identities=7% Similarity=-0.104 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 173 r~~~eRIar~AFe~A~~rrkkVt~v~K 199 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRRKKVTSVDK 199 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 456899999999999887788999984
No 90
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=46.70 E-value=49 Score=29.69 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+--....||..|+... ..|..|+++++........ -..-...+.+.+. ++.+.|.+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~-----------~~~r~~fl~~sL~--------~L~~~L~~ 68 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQSADM-----------APARVAYLQGCLQ--------ELQQRYQQ 68 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTCTTC-----------CHHHHHHHHHHHH--------HHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcCCCC-----------CHHHHHHHHHHHH--------HHHHHHHH
Confidence 55555667788777642 2688888876432100000 0111122222222 22223333
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 126 AQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.|+++.+ ..| ++.+.|.+++++++++.|+.-.. ......- + -......+....|+|..+..
T Consensus 69 ~G~~L~v--~~g-~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~---r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 69 AGSRLLL--LQG-DPQHLIPQLAQQLQAEAVYWNQD-IEPYGRD---R-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HTSCEEE--EES-CHHHHHHHHHHHTTCSEEEEECC-CSHHHHH---H-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCeEEE--EeC-CHHHHHHHHHHHcCCCEEEEecc-CChhHHH---H-HHHHHHHHHHcCcEEEEecC
Confidence 3776544 456 79999999999999999888543 3333222 1 12233344455677777654
No 91
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=46.06 E-value=16 Score=31.54 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=37.1
Q ss_pred hhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHH-HhhcCCccEEEEec
Q 025835 124 VEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDY-CVHHCVCPVIVVRF 194 (247)
Q Consensus 124 ~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~-vl~~a~~PVlvV~~ 194 (247)
.+.|+++.... + +. +-.+.++..+|+||+|...-........ ..|+..-. +.++..+|++|+-+
T Consensus 205 ~~~GI~vtlI~--D-sa---~~~~M~~~~Vd~VivGAd~V~aNG~v~N-KiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 205 MKDGIEVYVIT--D-NM---AGWLMKRGLIDAVVVGADRIALNGDTAN-KIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HTTTCEEEEEC--G-GG---HHHHHHTTCCSEEEECCSEEETTSCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HhCCCCEEEEe--h-hH---HHHHhhcCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 34488766443 3 22 3333445679999999986422222100 24765544 45667899999843
No 92
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=45.38 E-value=17 Score=31.37 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=37.4
Q ss_pred hCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHH-hhcCCccEEEEec
Q 025835 125 EAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYC-VHHCVCPVIVVRF 194 (247)
Q Consensus 125 ~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~v-l~~a~~PVlvV~~ 194 (247)
+.|+++.... + +. +-.+.++..+|+||+|..+-.... ... ..|+..-.+ .++..+|++|+-+
T Consensus 204 ~~GI~vtlI~--D-sa---~~~~M~~~~Vd~VivGAd~V~aNG-v~N-KiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 204 EDGIDVTLIT--D-SM---VGIVMQKGMVDKVIVGADRIVRDA-VFN-KIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HTTCCEEEEC--G-GG---HHHHHHTTCCSEEEECCSEEETTE-EEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred hCCCCEEEEe--h-hH---HHHHhhcCCCCEEEECccchhhcC-ccc-ccCHHHHHHHHHHcCCCEEEeCc
Confidence 4488876543 2 22 333445567999999998642222 200 257655544 4567899999854
No 93
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=42.62 E-value=7 Score=29.45 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCc--cCCCHHHHHhhcCCccEEEEecC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKS--RLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~--~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
...+.|.+++++++++.||+|-.- ......+.. ..-.++..+.....+||..|-..
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~-~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr 99 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPK-NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 99 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCC-CBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeee-cCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCC
Confidence 467889999999999999999541 110000000 01123445555568999998543
No 94
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=41.65 E-value=64 Score=28.58 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 025835 46 DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLAQPLVE 125 (247)
Q Consensus 46 D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (247)
|+.-....||.+|+.. +..|..|+++++........ ....-...+.+. +.++.+.|.+
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~----------~~~~r~~Fl~~s--------L~~L~~~L~~ 67 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLINNPY----------KSEFAVSFMINS--------LLELDDELRK 67 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSSCTT----------CCHHHHHHHHHH--------HHHHHHHHHT
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhccCCc----------CCHHHHHHHHHH--------HHHHHHHHHH
Confidence 5555556778887762 56899999986532110000 001111222222 2233333444
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 126 AQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.|+++.+ ..| ++.+.|.++++ +++.|+.-.. ......- . -......+....|+|..+..
T Consensus 68 ~G~~L~v--~~g-~~~~~l~~l~~--~~~~v~~~~~-~~~~~~~---r-d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 68 KGSRLNV--FFG-EAEKVVSRFFN--KVDAIYVNED-YTPFSIS---R-DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp TTCCCEE--EES-CHHHHHHHHCT--TCSEEEEECC-CSHHHHH---H-HHHHHHHHHTTTCEEEEECC
T ss_pred cCCeEEE--EEC-CHHHHHHHHHc--CCCEEEEecc-cChHHHH---H-HHHHHHHHHHcCceEEEecC
Confidence 4776544 456 79999999998 8998887543 3332222 1 12333444555677777654
No 95
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=40.70 E-value=25 Score=30.53 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 162 ~~~~eRIar~AFe~A~~rrkkVt~v~K 188 (359)
T 2y3z_A 162 KPEVERVARVAFEAARKRRKHVVSVDK 188 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 346889999999999887788999984
No 96
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=39.59 E-value=25 Score=27.89 Aligned_cols=44 Identities=5% Similarity=-0.013 Sum_probs=33.4
Q ss_pred cCCCEEEEeecCCCccccccCccCCCHHHHHhhc--CCccEEEEec
Q 025835 151 LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH--CVCPVIVVRF 194 (247)
Q Consensus 151 ~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~--a~~PVlvV~~ 194 (247)
..+|++|+..-..+.+.+++.|+-.+....++.. ..+||+++|.
T Consensus 95 ~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~~~alk~~~pvvlaPa 140 (206)
T 1qzu_A 95 RWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPA 140 (206)
T ss_dssp TTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEEC
T ss_pred cccCEEEEecCCHHHHHHHHccccCCHHHHHHHHhcCCCCEEEEec
Confidence 3589999998888888887666555655566665 6899999993
No 97
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=39.41 E-value=36 Score=25.56 Aligned_cols=60 Identities=5% Similarity=-0.073 Sum_probs=38.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcC--CccEEEEe
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC--VCPVIVVR 193 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a--~~PVlvV~ 193 (247)
|+++ ..+...-+.+.|++.+++.++|+|.+.......+..+ ..+.+.+-... .++|++--
T Consensus 46 G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~-----~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 46 GFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLM-----KRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp TCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHH-----HHHHHHHHHTTCTTSCEEEEE
T ss_pred CCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHH-----HHHHHHHHhcCCCCCEEEEeC
Confidence 5543 3333334788999999999999999998754444332 34444444432 37777654
No 98
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=39.32 E-value=55 Score=26.78 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEec
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRF 194 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~ 194 (247)
.-+++.++++++|++|+.+.... ... -.-++.++....+|++|+-.
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a-~PG------P~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPA-APG------PSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTT-SHH------HHHHHHHHHTSSSCEEEEEE
T ss_pred HHhhhhhhhcCCCEEEEECCCCC-CCC------chHHHHHHHhCCCCEEEEcC
Confidence 33455668999999999987543 222 24678899999999999964
No 99
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=38.79 E-value=1.7e+02 Score=24.35 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
+...+++|++.+ -.|.-++-++.+ .|.+|..+|..
T Consensus 177 g~~~kvlvllSG-vDS~vaa~ll~~----~G~~v~~v~~~ 211 (307)
T 1vbk_A 177 GTEGRMIGILHD-ELSALAIFLMMK----RGVEVIPVYIG 211 (307)
T ss_dssp TTTCEEEEECSS-HHHHHHHHHHHH----BTCEEEEEEES
T ss_pred CCCCcEEEEEeC-CcHHHHHHHHHh----CCCeEEEEEEE
Confidence 345799999999 888766555443 58999999985
No 100
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=38.62 E-value=82 Score=21.82 Aligned_cols=53 Identities=6% Similarity=-0.108 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
+..+++....+...+|+||+...-..+...+ .....+-++..+||+++-....
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~------~~~~~l~~~~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 37 TGEAAVEKVSGGWYPDLILMDIELGEGMDGV------QTALAIQQISELPVVFLTAHTE 89 (140)
T ss_dssp SHHHHHHHHHTTCCCSEEEEESSCSSSCCHH------HHHHHHHHHCCCCEEEEESSSS
T ss_pred ChHHHHHHHhcCCCCCEEEEeccCCCCCCHH------HHHHHHHhCCCCCEEEEECCCC
Confidence 4555544443337899999997632212222 2344444456799999976544
No 101
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=37.21 E-value=1.4e+02 Score=24.79 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=27.8
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
++|+|++.|...|..++..+.+.. |.+|..+|+-
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd 54 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVN 54 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEE
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEc
Confidence 689999999999998888877652 4678888884
No 102
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=37.03 E-value=85 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=23.8
Q ss_pred CCCCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEec
Q 025835 34 TGGAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRP 76 (247)
Q Consensus 34 ~~~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~ 76 (247)
+.|++++|||. .....+...++.+ ++.|.++++++...
T Consensus 2 n~m~~~kiLI~-g~g~~a~~i~~aa----~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 2 NAMEIKSILIA-NRGEIALRALRTI----KEMGKKAICVYSEA 39 (446)
T ss_dssp CTTCCCEEEEC-CCHHHHHHHHHHH----HHTTCEEEEEEEGG
T ss_pred CccccceEEEE-CCCHHHHHHHHHH----HHcCCEEEEEEcCc
Confidence 45778999994 4444444444443 34688888877543
No 103
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=36.97 E-value=1.5e+02 Score=23.35 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=49.7
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhh
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAN 117 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 117 (247)
.+||+|-+.++.....++-.+..-- .+.+|. -|+..... ... ++.
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~--~Vis~~~~-----------------a~~---~~~----------- 49 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIR--AVISNRAD-----------------AYG---LKR----------- 49 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEE--EEEESCTT-----------------CHH---HHH-----------
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEE--EEEeCCcc-----------------hHH---HHH-----------
Confidence 4689999999988888888776532 344544 44432110 000 110
Q ss_pred hhhhhhhhCCCceEEEEEecC-C---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 118 DLAQPLVEAQIPFKIHIVKDH-D---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 118 ~~~~~~~~~~v~v~~~v~~g~-d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
..+.|+++...-.... + ...++++..+++++|+||+..-+
T Consensus 50 -----A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 50 -----AQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp -----HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred -----HHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 0122777654211111 1 24678899999999999997643
No 104
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=36.08 E-value=44 Score=26.04 Aligned_cols=60 Identities=13% Similarity=-0.062 Sum_probs=36.9
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcC---CccEEEEe
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC---VCPVIVVR 193 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a---~~PVlvV~ 193 (247)
|+++. .+...-+.+.|++.+++.++|+|.+..........+ ..+.+.+-+.. .+||++--
T Consensus 116 G~~v~--~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~-----~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 116 GFTVY--NLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNM-----KSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp TCEEE--ECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHH-----HHHHHHHHHTTCGGGCEEEEES
T ss_pred CCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHH-----HHHHHHHHhcCCCCCCeEEEEC
Confidence 55533 333334889999999999999999987643333222 33444443332 27877763
No 105
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=35.97 E-value=70 Score=27.09 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=35.5
Q ss_pred hCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCH-HHHHhhcCCccEEEEecC
Q 025835 125 EAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSV-SDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 125 ~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSv-s~~vl~~a~~PVlvV~~~ 195 (247)
+.|+++... .+ +....+.. .+|+|++|..+-...+.... ..|+. ..-+.++..+||+|+-+.
T Consensus 170 ~~gI~vtli--~D-sa~~~~m~-----~vd~VivGAd~i~~nG~v~n-kiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 170 HLNVPVTVV--LD-AAVGYIME-----KADLVIVGAEGVVENGGIIN-KIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp TTTCCEEEE--CG-GGHHHHGG-----GCSEEEEECSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HcCCCEEEE--eh-hHHHHHHH-----hCCEEEECceEEecCCCeee-hhhhHHHHHHHHHhCCCEEEEecc
Confidence 348887544 33 23333332 69999999986322222100 24664 344566678999999543
No 106
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=35.36 E-value=2e+02 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.2
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
..++|+|++.+-..|..++..+.+ .+.+|+.+|+.
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~ 50 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMK 50 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 357899999998888877766554 37899999985
No 107
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=35.33 E-value=95 Score=25.12 Aligned_cols=62 Identities=10% Similarity=-0.145 Sum_probs=37.5
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc-CCccEEEEecC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH-CVCPVIVVRFS 195 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~-a~~PVlvV~~~ 195 (247)
|+++...=. . -+.+.|++.++++++|+|.+..........+ ..+.+.+-+. ..+||++--..
T Consensus 151 G~~Vi~LG~-~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~-----~~~i~~l~~~~~~~~v~vGG~~ 213 (258)
T 2i2x_B 151 GYNVVDLGR-D-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAF-----KEVNDMLLENGIKIPFACGGGA 213 (258)
T ss_dssp TCEEEEEEE-E-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHH-----HHHHHHHHTTTCCCCEEEESTT
T ss_pred CCEEEECCC-C-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHH-----HHHHHHHHhcCCCCcEEEECcc
Confidence 665443222 2 4788899999999999999987643333222 2334444333 34888776443
No 108
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=34.99 E-value=83 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 153 ~~~~eRiar~AFe~A~~rrkkVt~v~K 179 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRRKHLTLVHK 179 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 456889999999999877788999984
No 109
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=34.75 E-value=79 Score=22.75 Aligned_cols=47 Identities=6% Similarity=0.008 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHh---hcCCccEEEEecCCC
Q 025835 144 LCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCV---HHCVCPVIVVRFSDD 197 (247)
Q Consensus 144 I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl---~~a~~PVlvV~~~~~ 197 (247)
.++..++..+|+|++--. .....++ .+.+++= ....+||+++-....
T Consensus 49 al~~~~~~~~DlillD~~-MP~mdG~------el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 49 ALPMLKKGDFDFVVTDWN-MPGMQGI------DLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHHHHCCSEEEEESC-CSSSCHH------HHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHHHhCCCCEEEEcCC-CCCCCHH------HHHHHHHhCCCCCCCeEEEEECCCC
Confidence 445566778999999976 4444333 3344443 224689999976544
No 110
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=34.61 E-value=2e+02 Score=23.99 Aligned_cols=85 Identities=7% Similarity=0.015 Sum_probs=51.2
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
..+||+|-+.++..+..+|-++...- ..+++|.+| +.... .+. .+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~V--isn~~-------------------~~~-~~A----------- 149 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSD-ELDCDIACV--ISNHQ-------------------DLR-SMV----------- 149 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEE--EESSS-------------------TTH-HHH-----------
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEE--EECcH-------------------HHH-HHH-----------
Confidence 45789999999888888888776532 345665554 33211 000 010
Q ss_pred hhhhhhhhhCCCceEEEEEecCC---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHD---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
.+.|+++...-....+ -...+++..+++++|+||+..-+
T Consensus 150 -------~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 150 -------EWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp -------HTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred -------HHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 1227886543112111 23578999999999999998653
No 111
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=34.35 E-value=20 Score=27.85 Aligned_cols=8 Identities=25% Similarity=-0.118 Sum_probs=4.1
Q ss_pred ccEEEEec
Q 025835 187 CPVIVVRF 194 (247)
Q Consensus 187 ~PVlvV~~ 194 (247)
.-+.|+++
T Consensus 136 ~G~~iv~p 143 (181)
T 1g63_A 136 NDVKVYSP 143 (181)
T ss_dssp TTCEECCC
T ss_pred CCCEEECC
Confidence 44555554
No 112
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=34.27 E-value=1.6e+02 Score=22.87 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 38 HRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 38 ~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
+++++|++.+...|..++.++.+.. .+|..+|+.
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~ 35 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFD 35 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEE
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEE
Confidence 4689999999999999998887742 578888874
No 113
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.14 E-value=1.8e+02 Score=23.18 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=35.2
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
|+.+.+....+..-...+++.....++|-||+....... ..-..+....+||+++-..
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----------~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 40 GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-----------FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-----------HHHHHHHHTTCCEEEESCC
T ss_pred CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-----------HHHHHHHhCCCCEEEECCC
Confidence 766665554433345667777778889988886543211 1123455567888887543
No 114
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=33.82 E-value=2.6e+02 Score=25.11 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=57.8
Q ss_pred CeEEEee--cCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCc-ccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 39 RKIGIAV--DLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADW-GAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 39 k~ILVav--D~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
+.+|+=+ |+--....||..|+.. +..|..|+++++.......+ +... .-..-...+.+.++
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~------~~~~r~~Fl~~sL~------ 103 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPK------TGALRGGFLMECLV------ 103 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBS------SCHHHHHHHHHHHH------
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCC------CCHHHHHHHHHHHH------
Confidence 4455544 7766777888888763 34788888887543211000 0000 00111222222222
Q ss_pred hhhhhhhhhhCCCceEEEEEecCChHHHHHHHHHHcCCCEEEEeec
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
++.+.|.+.|+++.+ ..| ++.+.|.+++++++++.|+.-..
T Consensus 104 --~L~~~L~~~G~~L~v--~~g-~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 104 --DLRKNLMKRGLNLLI--RSG-KPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp --HHHHHHHHTTCCCEE--EES-CHHHHHHHHHHHHTCSEEEEECC
T ss_pred --HHHHHHHHcCCeEEE--EeC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 222333344776544 456 79999999999999999988643
No 115
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=33.27 E-value=1e+02 Score=26.75 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 178 r~~~eRIar~AFe~A~~rrkkVT~v~K 204 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRRKKVTSVDK 204 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 457899999999999887889999884
No 116
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.82 E-value=72 Score=22.33 Aligned_cols=54 Identities=4% Similarity=-0.108 Sum_probs=32.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
|+++++....-....+ +. .++|+|++|.+-+..+.+ .........+||.+++..
T Consensus 34 gi~v~i~a~~~~~~~~----~~--~~~DvvLLgPQV~y~~~~---------ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 34 EVRVIANSGAYGAHYD----IM--GVYDLIILAPQVRSYYRE---------MKVDAERLGIQIVATRGM 87 (108)
T ss_dssp TCSEEEEEEETTSCTT----TG--GGCSEEEECGGGGGGHHH---------HHHHHTTTTCEEEECCHH
T ss_pred CCceEEEEcchHHHHh----hc--cCCCEEEEChHHHHHHHH---------HHHHhhhcCCcEEEeCHH
Confidence 7887776543322222 22 358999999875433333 234455567999998753
No 117
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=32.52 E-value=2.1e+02 Score=23.60 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 025835 37 AHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKA 116 (247)
Q Consensus 37 ~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (247)
..+||+|-+.++..+..+|-++... ...+++|.+ |+.... .+.. +. +
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~--Visn~~-------------------~~~~-~A---~------- 135 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVA--VVSNHP-------------------DLEP-LA---H------- 135 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEE--EEESSS-------------------TTHH-HH---H-------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEE--EEeCcH-------------------HHHH-HH---H-------
Confidence 4578999999998888888887653 234555555 443211 0011 10 0
Q ss_pred hhhhhhhhhCCCceEEEEEecCC---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 117 NDLAQPLVEAQIPFKIHIVKDHD---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 117 ~~~~~~~~~~~v~v~~~v~~g~d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
+.|+++...-....+ -...+++..+++++|+||+..-+
T Consensus 136 --------~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 136 --------WHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp --------HTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred --------HcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 228886543221111 23468999999999999998653
No 118
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=32.36 E-value=2.2e+02 Score=23.65 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHh
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTK 115 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (247)
...+||+|-+.++..+..+|-++...- ..+++|.+ |+.... .+.. + .+
T Consensus 93 ~~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~--Visn~~-------------------~~~~-~---A~------ 140 (292)
T 3lou_A 93 AARPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVG--IVSNHP-------------------DFAP-L---AA------ 140 (292)
T ss_dssp TSCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEE--EEESSS-------------------TTHH-H---HH------
T ss_pred CCCCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEE--EEeCcH-------------------HHHH-H---HH------
Confidence 345799999999988888888876543 34566555 443211 0011 1 01
Q ss_pred hhhhhhhhhhCCCceEEEEEecCC---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 116 ANDLAQPLVEAQIPFKIHIVKDHD---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 116 ~~~~~~~~~~~~v~v~~~v~~g~d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
+.|+++...-....+ -...+++..+++++|+||+..-+
T Consensus 141 ---------~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 141 ---------QHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ---------HTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---------HcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 228886543221111 13578999999999999998653
No 119
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=31.89 E-value=35 Score=26.92 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=35.0
Q ss_pred cCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCCCCCcCC
Q 025835 151 LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSDDKDAAD 202 (247)
Q Consensus 151 ~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~~~~~~~ 202 (247)
..+|++|+..-..+.+.+++.|+-.+....++. ...+||+++|......-..
T Consensus 85 ~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h 139 (201)
T 3lqk_A 85 TPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLN 139 (201)
T ss_dssp SCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTT
T ss_pred cccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHh
Confidence 468999998887777877755554444444432 3589999999766554433
No 120
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=31.12 E-value=1.9e+02 Score=22.65 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCEEEEeec
Q 025835 142 ERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~ 161 (247)
..+++..+++++|+||+..-
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEeCc
Confidence 67888899999999999764
No 121
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=30.47 E-value=1.2e+02 Score=25.36 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~ 196 (247)
++++.+.......-...+.+.+...++|+||+.. |-|.+ ..++..+.. ...+|+.++|...
T Consensus 57 g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G-GDGTl--------~~v~~~l~~~~~~~~~plgiiP~Gt 120 (332)
T 2bon_A 57 GMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG-GDGTI--------NEVSTALIQCEGDDIPALGILPLGT 120 (332)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE-SHHHH--------HHHHHHHHHCCSSCCCEEEEEECSS
T ss_pred CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc-cchHH--------HHHHHHHhhcccCCCCeEEEecCcC
Confidence 7777666544322334444444445688777653 22333 234555553 4568888888654
No 122
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=29.83 E-value=2.1e+02 Score=22.78 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=25.5
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
.+|+|++.|...|...+..+..+. ..|.++|+
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~i 77 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILT 77 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEEC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEe
Confidence 589999999999999888887764 24667775
No 123
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=29.72 E-value=2.5e+02 Score=23.56 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=25.4
Q ss_pred EEEeec-----CChHHHHHHHHHHHHhCCCC-CEEEEEEEe
Q 025835 41 IGIAVD-----LSDESAFAVKWAVQNYLRPG-DAVILLHVR 75 (247)
Q Consensus 41 ILVavD-----~S~~s~~al~~A~~la~~~~-a~v~llhV~ 75 (247)
|||-.+ +++.+..++..|.+|+. .+ .+|+++-+-
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G 42 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIG 42 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEES
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEEC
Confidence 455444 36789999999999987 66 588887663
No 124
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=29.62 E-value=1.3e+02 Score=26.19 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 185 r~~~eRIar~AFe~A~~rrkkVT~v~K 211 (390)
T 3u1h_A 185 REEIERIIRKAFELALTRKKKVTSVDK 211 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHhHHHHHHHHHHHHcCCceEEEEC
Confidence 457899999999999887889999884
No 125
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=29.24 E-value=1e+02 Score=26.68 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 166 r~~~eRIar~AFe~A~~rrkkVT~v~K 192 (361)
T 3udu_A 166 KKEIERIARIAFESARIRKKKVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 457889999999999877789999884
No 126
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=29.24 E-value=82 Score=26.45 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=31.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHh-hcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCV-HHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl-~~a~~PVlvV~~~~ 196 (247)
++.+.+.......-+..+.+.+...++|+||+.. |-|.+.. ++..++ ....+|+.++|...
T Consensus 55 g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTv~~--------v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 55 GYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGTLNE--------VVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHHHHH--------HHHHHTTCSSCCEEEEEECSS
T ss_pred CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-CchHHHH--------HHHHHHhCCCCCcEEEecCCc
Confidence 5665555444422344454444445678776653 2223322 344443 23567888887543
No 127
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=29.20 E-value=97 Score=22.82 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=21.3
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFG 164 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~ 164 (247)
|++++..-+...++ ..+.....+ +|+||+|+...+
T Consensus 29 g~~v~~~~~~~~~~-~~~~~~~~~--~d~ii~Gspty~ 63 (161)
T 3hly_A 29 GVAVEMVDLRAVDP-QELIEAVSS--ARGIVLGTPPSQ 63 (161)
T ss_dssp TCCEEEEETTTCCH-HHHHHHHHH--CSEEEEECCBSS
T ss_pred CCeEEEEECCCCCH-HHHHHHHHh--CCEEEEEcCCcC
Confidence 77766655444333 334443433 699999998654
No 128
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=28.95 E-value=92 Score=25.74 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh-cCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH-HCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~-~a~~PVlvV~~~~ 196 (247)
++.+++.......-+..+.+.+.+ ++|+||+.. |-+.+.. +...+.. ...+|+.++|...
T Consensus 39 ~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGTl~~--------v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 39 FPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGTVFE--------CTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHHHHH--------HHHHHTTCSSCCEEEEEECSS
T ss_pred CCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchHHHH--------HHHHHhhCCCCCcEEEecCCc
Confidence 777777766654455566666543 788777654 2233333 3444443 2578999998643
No 129
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=28.77 E-value=47 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.2
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEe
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVR 75 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~ 75 (247)
++|+|++.+...|..++.++.+. .|.+|+.+|+-
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd 264 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVD 264 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEEC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEec
Confidence 78999999999999888887664 35678999984
No 130
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=28.19 E-value=92 Score=26.47 Aligned_cols=62 Identities=3% Similarity=0.061 Sum_probs=40.4
Q ss_pred ceEEEEEecC--ChHHHHHHHHHHcCCCEEEEeecCC--CccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 129 PFKIHIVKDH--DMKERLCLEVERLGLSAVIMGSRGF--GAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 129 ~v~~~v~~g~--d~~~~I~~~a~~~~~DLIVmGs~g~--~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
+++-....+. .+....++..++ +|+||+|.... |-+..+ ++..+.+. ++.+++|++.|.+--
T Consensus 155 ~i~~v~~~p~~~~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 155 KIKRVFLTPKDTKPLREGLEAIRK--ADVIVIGPGSLYTSVLPNL---LVPGICEA-IKQSTARKVYICNVM 220 (323)
T ss_dssp CEEEEEEESTTCCCCHHHHHHHHH--CSEEEECSSCTTTTHHHHH---TSTTHHHH-HHHCCSEEEEECCSB
T ss_pred CceEEEEeCCCCCCCHHHHHHHHh--CCEEEECCCCCHHHhcccc---cCchHHHH-HHhCCCCEEEEcCCC
Confidence 4444444443 245667777766 79999998643 233344 55667676 677899999998764
No 131
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=27.97 E-value=73 Score=23.56 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=20.9
Q ss_pred CCceEEEEEecC-ChHHHHHHHHHHcCCCEEEEeecCCC
Q 025835 127 QIPFKIHIVKDH-DMKERLCLEVERLGLSAVIMGSRGFG 164 (247)
Q Consensus 127 ~v~v~~~v~~g~-d~~~~I~~~a~~~~~DLIVmGs~g~~ 164 (247)
|++++..-+... ++ ..+..... ++|+||+|+....
T Consensus 33 g~~v~~~~~~~~~~~-~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 33 GVGVDVVDLGAAVDL-QELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp TCEEEEEESSSCCCH-HHHHHHHH--TEEEEEEECCBTT
T ss_pred CCeEEEEECcCcCCH-HHHHHHHH--hCCEEEEEcCcCC
Confidence 776665544443 33 33444343 4699999998664
No 132
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=27.95 E-value=2.2e+02 Score=22.28 Aligned_cols=85 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAND 118 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 118 (247)
+||.|-+.++..+..+|-.+..- ...+.+|.+|-.-++.. ... + .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~~~~-------------------~~~---~-~----------- 45 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNKAAV-------------------AGL---D-K----------- 45 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESSTTC-------------------HHH---H-H-----------
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCCCCh-------------------HHH---H-H-----------
Confidence 47899999988888887765542 22355555544322110 000 0 0
Q ss_pred hhhhhhhCCCceEEEEEec-CC---hHHHHHHHHHHcCCCEEEEeecC
Q 025835 119 LAQPLVEAQIPFKIHIVKD-HD---MKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 119 ~~~~~~~~~v~v~~~v~~g-~d---~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
+.+.|+++...-... .+ ....+++..+++++|+||+..-+
T Consensus 46 ----A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 46 ----AERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp ----HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred ----HHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 112277765322111 11 13568888899999999998643
No 133
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.64 E-value=1.4e+02 Score=19.91 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
+..+ .++.+++..+|+|++...- .....+ .....+-....+||+++-....
T Consensus 34 ~~~~-al~~~~~~~~dlii~D~~~-p~~~g~------~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 34 DGNE-AVEMVEELQPDLILLDIML-PNKDGV------EVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp SHHH-HHHHHHTTCCSEEEEETTS-TTTHHH------HHHHHHHTTCCSCEEEEEESSC
T ss_pred CHHH-HHHHHhhCCCCEEEEeCCC-CCCCHH------HHHHHHHhcCCCCEEEEECCCC
Confidence 3444 4566677899999998763 222222 2445555556799999865443
No 134
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=27.62 E-value=1.5e+02 Score=20.38 Aligned_cols=49 Identities=8% Similarity=-0.070 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSDD 197 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~~ 197 (247)
...++.+++..+|+||+...-. ....+ .....+-. ...+||+++-....
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~-~~~g~------~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMP-KISGM------DLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS-SSCHH------HHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred HHHHHHHHcCCCCEEEEcCCCC-CCCHH------HHHHHHHcCcccCCCCEEEEeCCCC
Confidence 3445566667899999997532 22221 24455554 35699999965443
No 135
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=27.47 E-value=1.5e+02 Score=25.49 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 169 ~~~~eRiar~AFe~A~~rrkkVt~v~K 195 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRRRKVTSIDK 195 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 457899999999999877788999984
No 136
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.45 E-value=1.3e+02 Score=21.05 Aligned_cols=50 Identities=8% Similarity=-0.056 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc-CCccEEEEecCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH-CVCPVIVVRFSD 196 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~-a~~PVlvV~~~~ 196 (247)
+..+ .++..++..+|+||+...-. ....+ .....+-.. ..+||+++-...
T Consensus 46 ~~~~-a~~~l~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 46 DATQ-ALQLLASREVDLVISAAHLP-QMDGP------TLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp SHHH-HHHHHHHSCCSEEEEESCCS-SSCHH------HHHHHHHHHCTTSEEEEECCCC
T ss_pred CHHH-HHHHHHcCCCCEEEEeCCCC-cCcHH------HHHHHHHhHCCCCeEEEEECCC
Confidence 3444 44566678899999997632 22222 233344333 468999986544
No 137
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=27.29 E-value=1.3e+02 Score=19.65 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
+..+. ++......+|+|++...- .....+ .....+-+...+||+++-...
T Consensus 33 ~~~~a-~~~~~~~~~dlvl~D~~l-~~~~g~------~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 33 NGREA-LEQFEAEQPDIIILDLML-PEIDGL------EVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp SHHHH-HHHHHHHCCSEEEECSSC-SSSCHH------HHHHHHHHHCCCCEEEEESCC
T ss_pred CHHHH-HHHHHhCCCCEEEEeccC-CCCCHH------HHHHHHHhCCCCCEEEEecCC
Confidence 34444 455566789999998753 222221 234444445679999986544
No 138
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=27.25 E-value=1.6e+02 Score=25.06 Aligned_cols=63 Identities=8% Similarity=0.126 Sum_probs=39.1
Q ss_pred ceEEEEEecC--ChHHHHHHHHHHcCCCEEEEeecCC--CccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 129 PFKIHIVKDH--DMKERLCLEVERLGLSAVIMGSRGF--GAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 129 ~v~~~v~~g~--d~~~~I~~~a~~~~~DLIVmGs~g~--~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
+++-....+. .+....++..++ +|+||+|.... |-+..+ ++..+.+. ++.+++|++.|.+--.
T Consensus 154 ~i~~v~l~p~~~~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~N~~~ 220 (332)
T 2ppv_A 154 KIDRVFLEPSDVEPMNEAIEALEQ--ADLIVLGPGSLYTSVISNL---CVKGISEA-LLRTSAPKLYVSNVMT 220 (332)
T ss_dssp CEEEEEEESCCCCCCHHHHHHHHH--CSEEEECSSCCCCCCHHHH---TSHHHHHH-HHHCCSCEEEECCSBC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHh--CCEEEECCCCCHHHhcccc---cCchHHHH-HHhCCCCEEEEcCCCC
Confidence 3444444332 245667777766 79999998643 223333 34455555 6778999999987543
No 139
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=26.99 E-value=2.4e+02 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCEEEEeec
Q 025835 141 KERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 141 ~~~I~~~a~~~~~DLIVmGs~ 161 (247)
...+++..+++++|+||+..-
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy 110 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGY 110 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSC
T ss_pred cHHHHHHHHhcCCCEEEEcCh
Confidence 367888899999999999864
No 140
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=26.76 E-value=1.2e+02 Score=25.80 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHhCCC-CCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRP-GDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~-~a~v~llhV 74 (247)
...+++.+++|+++|+.. ..+|+++|=
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~K 170 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHK 170 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 457899999999999987 568999984
No 141
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=26.33 E-value=1.2e+02 Score=23.34 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=22.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGF 163 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~ 163 (247)
+.++++.-+...+-...+.+..++ +|.||+++.-.
T Consensus 47 g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y 81 (204)
T 2amj_A 47 GHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGW 81 (204)
T ss_dssp TCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECB
T ss_pred CCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCcc
Confidence 666666655543344556666655 79999999743
No 142
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=26.22 E-value=2e+02 Score=23.57 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=70.8
Q ss_pred EEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 025835 41 IGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKANDLA 120 (247)
Q Consensus 41 ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 120 (247)
.=|+..+-......++..+++|+..|..| ..|.--+ ...+++...+... .++....+.-++-.+ +.+
T Consensus 31 ANIACGfHAGDp~~M~~tv~lA~~~gV~I-GAHPgyp-Dl~GFGRR~m~~s-----~~el~~~v~YQiGAL-----~a~- 97 (255)
T 1v6t_A 31 ANVACGWHAGDPLVMRKTVRLAKENDVQV-GAHPGYP-DLMGFGRRYMKLT-----PEEARNYILYQVGAL-----YAF- 97 (255)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCS-CTTTTTCSCCCCC-----HHHHHHHHHHHHHHH-----HHH-
T ss_pred hhhhccccCCCHHHHHHHHHHHHHcCCeE-ecCCCCC-cccCCCCCCCCCC-----HHHHHHHHHHHHHHH-----HHH-
Confidence 33455555556677888888888777654 3454211 1222222222211 123333332222211 111
Q ss_pred hhhhhCCCceEEEEEec---------CChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEE
Q 025835 121 QPLVEAQIPFKIHIVKD---------HDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIV 191 (247)
Q Consensus 121 ~~~~~~~v~v~~~v~~g---------~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlv 191 (247)
+...|.++..+--.| ...+++|++.++..+.+|+++|..+ |...+..+....|++-
T Consensus 98 --a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g-------------s~~~~~A~~~Gl~~~~ 162 (255)
T 1v6t_A 98 --AKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN-------------SRVADIAEEMGLKVAH 162 (255)
T ss_dssp --HHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT-------------CHHHHHHHHHTCCEEE
T ss_pred --HHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC-------------hHHHHHHHHcCCcEEE
Confidence 123377766544443 2468899999999999999999543 3344555666677766
Q ss_pred EecCCCCCc
Q 025835 192 VRFSDDKDA 200 (247)
Q Consensus 192 V~~~~~~~~ 200 (247)
==..++.=.
T Consensus 163 E~FADR~Y~ 171 (255)
T 1v6t_A 163 EVFADRAYN 171 (255)
T ss_dssp EECTTBCBC
T ss_pred EEeeccccC
Confidence 544444333
No 143
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=25.88 E-value=69 Score=27.84 Aligned_cols=60 Identities=20% Similarity=0.054 Sum_probs=40.1
Q ss_pred EEEEecCChHHHHHHHHHH-cCCCEEEEeecCCCccccccCccCCCHHHHHhhcC--CccEEEEecCC
Q 025835 132 IHIVKDHDMKERLCLEVER-LGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHC--VCPVIVVRFSD 196 (247)
Q Consensus 132 ~~v~~g~d~~~~I~~~a~~-~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a--~~PVlvV~~~~ 196 (247)
..+..|.+..-.++.+-+. .++||||.|-- +-.. +. +.|-+...|.+.+ .+||+++-..-
T Consensus 257 a~l~~G~~~v~~~~~l~~~l~~ADLVITGEG-~~D~-QT---~~GK~p~gVa~~A~~~~PviaiaG~~ 319 (371)
T 1to6_A 257 ASIVSGIDTCLDLIDFDKKVSDVDLVIVGEG-RLDR-QS---LAGKAPIGVAKRTPVGVPVVAICGSL 319 (371)
T ss_dssp CEEEEHHHHHHHHTTHHHHTTTCSEEEECCS-EECS-TT---TTTCHHHHHHTTSCTTCCEEEEESEE
T ss_pred CEeccHHHHHHHhhCHHHHhcCCCEEEECCC-CCCC-CC---CCCcHHHHHHHHHhcCCCEEEEeCCC
Confidence 3455665555555555544 47999999953 3333 33 6788888888777 58999996544
No 144
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=25.26 E-value=37 Score=30.78 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHhCCC-CCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRP-GDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~-~a~v~llhV 74 (247)
...+++.+++|+++|+.. ..+|+++|=
T Consensus 164 r~~ieRIar~AFe~A~~r~rkkVT~V~K 191 (496)
T 2d1c_A 164 WKGSEKIVRFAFELARAEGRKKVHCATK 191 (496)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 357899999999999877 578999985
No 145
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.22 E-value=1.7e+02 Score=20.09 Aligned_cols=49 Identities=10% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSDD 197 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~~ 197 (247)
...++.+++..+|+||+...- .....+ .....+-. ...+||+++-....
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l-~~~~g~------~~~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGL-PIANGF------EVMSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTC-GGGCHH------HHHHHHHSSSTTTTCCEEEEETTCC
T ss_pred HHHHHHhhcCCCCEEEEeCCC-CCCCHH------HHHHHHHhcccccCCCEEEEeCCCC
Confidence 345566677889999998753 222221 23444444 34689999975443
No 146
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=25.10 E-value=1.8e+02 Score=25.07 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 164 ~~~~eRiar~AFe~A~~rrkkVt~v~K 190 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRRKQLCSVDK 190 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 457899999999999877788999984
No 147
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.34 E-value=1.7e+02 Score=19.90 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc---CCccEEEEecCCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH---CVCPVIVVRFSDD 197 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~---a~~PVlvV~~~~~ 197 (247)
+..+ .++.+++..+|+||+...- .....+ .....+-.. ..+||+++-....
T Consensus 34 ~~~~-a~~~~~~~~~dlvi~D~~l-~~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (140)
T 3n53_A 34 NEKE-ALEQIDHHHPDLVILDMDI-IGENSP------NLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
T ss_dssp SHHH-HHHHHHHHCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC--
T ss_pred CHHH-HHHHHhcCCCCEEEEeCCC-CCCcHH------HHHHHHHcCcccCCCCEEEEecCCC
Confidence 3444 4455667789999999753 222222 345555555 4689999876543
No 148
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=24.27 E-value=52 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEE-Ee
Q 025835 144 LCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIV-VR 193 (247)
Q Consensus 144 I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlv-V~ 193 (247)
+++.+.+.+.|.|++||.+-+.+... +..+...|-+.+..||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~----~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH----MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH----HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH----HHHHHHHHHHhCCCCEEEECC
Confidence 56666778999999995444322222 345566666668999999 77
No 149
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=24.11 E-value=1.1e+02 Score=26.49 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHhCCCCC-EEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGD-AVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a-~v~llhV 74 (247)
...+++.+++|+++|+..+. +|+++|=
T Consensus 165 ~~~~eRIar~AFe~A~~r~~kkVt~v~K 192 (364)
T 3flk_A 165 RRGVDRILKYAFDLAEKRERKHVTSATK 192 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 45789999999999987765 6999984
No 150
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=24.08 E-value=1.9e+02 Score=25.40 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
...+++.+++|+++|+....+|+++|=
T Consensus 206 r~~~eRIar~AFe~A~~rrkkVT~v~K 232 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRRGKLCSVDK 232 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 457889999999999877788999884
No 151
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=23.58 E-value=71 Score=26.35 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCC-HHHHHhhcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGS-VSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGS-vs~~vl~~a~~PVlvV~~~~ 196 (247)
|+++.... + +....++ ..+|++++|..+-.....+.. ..|+ ....+.++..+||+|+-+..
T Consensus 160 gI~vtli~--d-sa~~~~m-----~~vd~vivGAd~i~~nG~v~n-kiGt~~iA~~A~~~~vp~~V~a~~~ 221 (276)
T 1vb5_A 160 GIEFEVIT--D-AQMGLFC-----REASIAIVGADMITKDGYVVN-KAGTYLLALACHENAIPFYVAAETY 221 (276)
T ss_dssp TCCEEEEC--G-GGHHHHH-----TTCSEEEECCSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECCGG
T ss_pred CCCEEEEc--H-HHHHHHH-----ccCCEEEEcccEEecCCCEee-chhHHHHHHHHHHcCCCEEEecccc
Confidence 78766443 3 3333333 269999999987533322211 1454 34456677789999996544
No 152
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=23.53 E-value=42 Score=28.42 Aligned_cols=63 Identities=11% Similarity=-0.046 Sum_probs=42.4
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEE
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVV 192 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV 192 (247)
++-+=..-+.......++++.|++.+.-+|+-.+.+....... .+......+.+++.+||.+-
T Consensus 26 ~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~---~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 26 SFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADS---LLVRTAASACRAASVPITLH 88 (306)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTT---HHHHHHHHHHHHCSSCEEEE
T ss_pred CcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccH---HHHHHHHHHHHHCCCCEEEE
Confidence 6666566566656889999999999999999877643111111 12234455677888999775
No 153
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.37 E-value=2e+02 Score=20.19 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc---CCccEEEEecCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH---CVCPVIVVRFSDD 197 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~---a~~PVlvV~~~~~ 197 (247)
...++.+++..+|+||+...-. ....+ .....+-.. ..+||+++-....
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~-~~~g~------~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMP-EMDGY------ALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCS-SSCHH------HHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCHH------HHHHHHHhCCCcCCCCEEEEECCCC
Confidence 4455666778899999997632 22222 234444443 4689999875443
No 154
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=23.08 E-value=1.6e+02 Score=21.09 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
+..+ .++.+++..+|+||+...-. ....+ .....+-...++||+++-....
T Consensus 59 ~~~~-al~~l~~~~~dlvilD~~l~-~~~g~------~l~~~lr~~~~~~ii~~s~~~~ 109 (164)
T 3t8y_A 59 DGLE-AVEKAIELKPDVITMDIEMP-NLNGI------EALKLIMKKAPTRVIMVSSLTE 109 (164)
T ss_dssp SHHH-HHHHHHHHCCSEEEECSSCS-SSCHH------HHHHHHHHHSCCEEEEEESSCC
T ss_pred CHHH-HHHHhccCCCCEEEEeCCCC-CCCHH------HHHHHHHhcCCceEEEEecCCc
Confidence 3444 44555667899999987632 22222 3455565566689988865443
No 155
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=22.95 E-value=83 Score=26.98 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCEEEEeecCC--CccccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 140 MKERLCLEVERLGLSAVIMGSRGF--GAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 140 ~~~~I~~~a~~~~~DLIVmGs~g~--~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
+....++.+++ +|+||+|..+. |-+..+ ++..+.+. ++.+++|++.|.+-
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTSI~P~L---lv~gi~~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTSILPNL---TIGNIGRA-VCESDAEVVYICNI 229 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHH---SSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccc---cCccHHHH-HHhCCCCEEEEeCC
Confidence 44556666655 79999997643 223333 45555566 67789999999874
No 156
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.80 E-value=1.4e+02 Score=22.53 Aligned_cols=33 Identities=3% Similarity=0.025 Sum_probs=19.2
Q ss_pred CCceEEEEEecCCh---HHHHHHHHHHcCCCEEEEe
Q 025835 127 QIPFKIHIVKDHDM---KERLCLEVERLGLSAVIMG 159 (247)
Q Consensus 127 ~v~v~~~v~~g~d~---~~~I~~~a~~~~~DLIVmG 159 (247)
|+.+....+..++. .++|.+.+++.++|+||+.
T Consensus 41 G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 41 GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 88776665555443 3344444443368998875
No 157
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.44 E-value=1.8e+02 Score=19.36 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc---CCccEEEEecCCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH---CVCPVIVVRFSDDK 198 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~---a~~PVlvV~~~~~~ 198 (247)
...++..++..+|+|++...-. ....+ .....+-.. ..+||+++-.....
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLP-DTSGL------ALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCS-SSBHH------HHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCHH------HHHHHHHhhhccCCCCEEEEECCcch
Confidence 4455666778899999997632 22222 244555443 56899999765543
No 158
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=22.12 E-value=1.6e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHhCCC-CCEEEEEEE
Q 025835 48 SDESAFAVKWAVQNYLRP-GDAVILLHV 74 (247)
Q Consensus 48 S~~s~~al~~A~~la~~~-~a~v~llhV 74 (247)
...+++.+++|+++|+.. .-+|+++|=
T Consensus 156 ~~~~eRiar~AF~~A~~r~rkkVt~v~K 183 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNRKSVTAVHK 183 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 557889999999999876 557999985
No 159
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.10 E-value=4e+02 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=19.6
Q ss_pred EEEecCChHHHHHHHHHHcCCCEEEEeec
Q 025835 133 HIVKDHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 133 ~v~~g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
.+..+.|..+ +.+++++.++||||-+++
T Consensus 367 ~v~~~~d~~~-l~~~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 367 KVKVEGDFFD-VHQWIKNEGVDLLISNTY 394 (458)
T ss_dssp EEEESCBHHH-HHHHHHHSCCSEEEESGG
T ss_pred EEEECCCHHH-HHHHHHhcCCCEEEeCcc
Confidence 4555544444 788888999999996554
No 160
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.04 E-value=1.9e+02 Score=19.61 Aligned_cols=49 Identities=2% Similarity=-0.131 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSDD 197 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~~ 197 (247)
+..++.+++..+|+||+...-. ....+ .....+-. ...+||+++-....
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~-~~~g~------~~~~~l~~~~~~~~~pii~~s~~~~ 92 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMP-GMDGW------DTIRAILDNSLEQGIAIVMLTAKNA 92 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCS-SSCHH------HHHHHHHHTTCCTTEEEEEEECTTC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCHH------HHHHHHHhhcccCCCCEEEEECCCC
Confidence 4455667778899999987632 22221 23445544 34699999965543
No 161
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.99 E-value=2e+02 Score=24.30 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=34.9
Q ss_pred CCceEEEEEecCC---hHHHHHHHHHHcCCCEEE-EeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 127 QIPFKIHIVKDHD---MKERLCLEVERLGLSAVI-MGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 127 ~v~v~~~v~~g~d---~~~~I~~~a~~~~~DLIV-mGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
++.+.+.+..|.. ..+.+.+.+++.++|+|| +|...-... +..+.....+|++.||-..
T Consensus 58 g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~-----------aK~iA~~~~~p~i~IPTTa 120 (370)
T 1jq5_A 58 NIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDT-----------AKAVADELDAYIVIVPTAA 120 (370)
T ss_dssp TCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHH-----------HHHHHHHHTCEEEEEESSC
T ss_pred CCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHH-----------HHHHHHhcCCCEEEecccc
Confidence 6666543444432 345567778888999988 553222222 2223333479999999873
No 162
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=21.98 E-value=1.2e+02 Score=22.67 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=21.0
Q ss_pred CCCceEEEEEecCChH---HHHHHHHHHcCCCEEEEee
Q 025835 126 AQIPFKIHIVKDHDMK---ERLCLEVERLGLSAVIMGS 160 (247)
Q Consensus 126 ~~v~v~~~v~~g~d~~---~~I~~~a~~~~~DLIVmGs 160 (247)
.|+++....+.+++.. ++|.+.....++|+||...
T Consensus 52 ~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 52 NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 3888877777774433 2233333345689988753
No 163
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=21.61 E-value=3.2e+02 Score=22.03 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCC-ccccccCccCCCHHHHHhhcCCccEEEEecCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFG-AAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSD 196 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~-~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~ 196 (247)
+..++ ++.+++..+|||+|--. .. ++..+ .+...+-....+||+++-...
T Consensus 193 ~g~eA-l~~~~~~~~dlvl~D~~-MPd~mdG~------e~~~~ir~~~~~piI~lT~~~ 243 (286)
T 3n0r_A 193 TRGEA-LEAVTRRTPGLVLADIQ-LADGSSGI------DAVKDILGRMDVPVIFITAFP 243 (286)
T ss_dssp SHHHH-HHHHHHCCCSEEEEESC-CTTSCCTT------TTTHHHHHHTTCCEEEEESCG
T ss_pred CHHHH-HHHHHhCCCCEEEEcCC-CCCCCCHH------HHHHHHHhcCCCCEEEEeCCH
Confidence 34444 45556778999999875 22 23332 233444333489999998653
No 164
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.49 E-value=1.8e+02 Score=19.07 Aligned_cols=48 Identities=6% Similarity=0.030 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc---CCccEEEEecCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH---CVCPVIVVRFSD 196 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~---a~~PVlvV~~~~ 196 (247)
...++..++..+|+|++...-.+....+ ...+.+-.. ..+||+++ ...
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~------~~~~~l~~~~~~~~~~ii~~-~~~ 89 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGY------LICGKLKKDDDLKNVPIVII-GNP 89 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHH------HHHHHHHHSTTTTTSCEEEE-ECG
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHH------HHHHHHhcCccccCCCEEEE-ecC
Confidence 3344556667899999987632122221 234455443 56999999 543
No 165
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.34 E-value=2e+02 Score=19.55 Aligned_cols=48 Identities=10% Similarity=-0.043 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhc-CCccEEEEecCCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHH-CVCPVIVVRFSDD 197 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~-a~~PVlvV~~~~~ 197 (247)
...++..++..+|+||+.. - .....+ .....+-.. ..+||+++-....
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~-~~~~g~------~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-F-EGEESL------NLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-T-TTHHHH------HHHHHHHHHCTTCEEEEEESCCC
T ss_pred HHHHHHHhccCCCEEEEeC-C-CCCcHH------HHHHHHHHHCCCCCEEEEECCCC
Confidence 4455666677899999997 3 222222 233444433 3599999865443
No 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.33 E-value=2.6e+02 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=21.8
Q ss_pred EEeecCChHHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 42 GIAVDLSDESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 42 LVavD~S~~s~~al~~A~~la~~~~a~v~llhV 74 (247)
+++.-++-.+..+...|..++. .|.++.++..
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~ 136 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCS 136 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEC
T ss_pred EECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 3444566678888888877776 5777777653
No 167
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.32 E-value=2e+02 Score=22.65 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCceEEEEEecC-Ch--HHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEe
Q 025835 127 QIPFKIHIVKDH-DM--KERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVR 193 (247)
Q Consensus 127 ~v~v~~~v~~g~-d~--~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~ 193 (247)
|+.+.+....+. +. ...+++.+...++|-||+.......+.. .... +. ..+||+++-
T Consensus 35 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~--------~~~~-~~-~~iPvV~~~ 94 (304)
T 3o1i_D 35 GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH--------NLKS-WV-GNTPVFATV 94 (304)
T ss_dssp TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT--------THHH-HT-TTSCEEECS
T ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH--------HHHH-Hc-CCCCEEEec
Confidence 666655444331 33 2345666666789999998654332222 2333 34 789999993
No 168
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=21.13 E-value=1.8e+02 Score=21.15 Aligned_cols=39 Identities=5% Similarity=0.063 Sum_probs=25.8
Q ss_pred hhhCCCceEEEEEe-cCChHHHHHHHHHHcCCCEEEEeec
Q 025835 123 LVEAQIPFKIHIVK-DHDMKERLCLEVERLGLSAVIMGSR 161 (247)
Q Consensus 123 ~~~~~v~v~~~v~~-g~d~~~~I~~~a~~~~~DLIVmGs~ 161 (247)
|.+.|+.+++.... +..+...|-+.....-+=+||+|.+
T Consensus 31 L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 31 VRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 33448998886652 4457777777666666667777754
No 169
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.10 E-value=37 Score=26.89 Aligned_cols=38 Identities=13% Similarity=-0.039 Sum_probs=28.1
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEE
Q 025835 36 GAHRKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLH 73 (247)
Q Consensus 36 ~~~k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llh 73 (247)
...++|++++-++..+..+++.+..|.+..|.+|.++-
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 34689999999999999998887777542577776654
No 170
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.02 E-value=2e+02 Score=19.47 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhh---cCCccEEEEecCC
Q 025835 142 ERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVH---HCVCPVIVVRFSD 196 (247)
Q Consensus 142 ~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~---~a~~PVlvV~~~~ 196 (247)
...++.+++..+|+||+...- .....+ .....+-. ...+||+++-...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l-~~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNL-PDQDGV------SLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCC-SSSCHH------HHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHHHHHhCCCCEEEEeCCC-CCCCHH------HHHHHHHhCcccCCCCEEEEecCC
Confidence 445566677889999998753 222222 23444443 3468999996543
No 171
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.01 E-value=2.2e+02 Score=22.58 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=21.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHcCCCEEEEee
Q 025835 127 QIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGS 160 (247)
Q Consensus 127 ~v~v~~~v~~g~d~~~~I~~~a~~~~~DLIVmGs 160 (247)
+++++.......+-.+.+++.+++.++++||=|.
T Consensus 129 ~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 129 NLRLDQRSYITEEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCH
Confidence 6666666666555556667777777777755443
No 172
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=21.00 E-value=66 Score=28.06 Aligned_cols=56 Identities=4% Similarity=-0.202 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHcCCCEEEEeecCCCccccccCccCCCHHHHHhhcCCccEEEEecCCC
Q 025835 139 DMKERLCLEVERLGLSAVIMGSRGFGAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFSDD 197 (247)
Q Consensus 139 d~~~~I~~~a~~~~~DLIVmGs~g~~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~~~ 197 (247)
.-.+.|.++++++++|-||.-.........+ ....+-+.+.+...+|+|.+-....
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~---~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSL---IQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHT---THHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHH---HHHHHHHHHHHhcCCCEEEEeccCC
Confidence 3567788999999999999988876665554 3233444666888999999975543
No 173
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=20.46 E-value=1.6e+02 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=23.1
Q ss_pred CCCeEEEeecCCh-HHHHHHHHHHHHhCCCCCEEEEEEE
Q 025835 37 AHRKIGIAVDLSD-ESAFAVKWAVQNYLRPGDAVILLHV 74 (247)
Q Consensus 37 ~~k~ILVavD~S~-~s~~al~~A~~la~~~~a~v~llhV 74 (247)
.+.|||+.+-++. .-...+..|..|.. .|.+|+++.-
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHh-CCCEEEEEcC
Confidence 3568887766543 44555555555555 4788888763
No 174
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.35 E-value=3.1e+02 Score=21.34 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecC
Q 025835 141 KERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 141 ~~~I~~~a~~~~~DLIVmGs~g 162 (247)
...+++..+++++|+||+..-+
T Consensus 71 ~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 71 ESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHhcCCCEEEEchhh
Confidence 3478888899999999998643
No 175
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=20.29 E-value=1.2e+02 Score=25.78 Aligned_cols=50 Identities=6% Similarity=0.108 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHcCCCEEEEeecCC--CccccccCccCCCHHHHHhhcCCccEEEEecC
Q 025835 140 MKERLCLEVERLGLSAVIMGSRGF--GAAKKSSKSRLGSVSDYCVHHCVCPVIVVRFS 195 (247)
Q Consensus 140 ~~~~I~~~a~~~~~DLIVmGs~g~--~~~~~~~~~~lGSvs~~vl~~a~~PVlvV~~~ 195 (247)
+....++..++ +|+||+|.... |-+-.+ ++..+.+. ++.+++|++.|.+-
T Consensus 174 a~p~al~AI~~--AD~IvlgPGSl~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~Nl 225 (326)
T 2q7x_A 174 ASRRVVQTILE--SDMIVLGPGSLFTSILPNI---VIXEIGRA-LLETXAEIAYVCNI 225 (326)
T ss_dssp BCSHHHHHHHH--CSEEEECSSCCCCCCHHHH---TSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHHhhhh---hhccHHHH-HHhccCceEEeccC
Confidence 44556666655 79999997643 223333 45555555 67789999999874
No 176
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=20.14 E-value=3.4e+02 Score=21.71 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=49.3
Q ss_pred CeEEEeecCChHHHHHHHHHHHHhCCCCCEEEEEEEecCCCccCCCcccchhhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 025835 39 RKIGIAVDLSDESAFAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIEVSLEMSESEESQRKLEDDFDQFTTTKAND 118 (247)
Q Consensus 39 k~ILVavD~S~~s~~al~~A~~la~~~~a~v~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 118 (247)
.+++|.+.+-..|..++-++.. .|.+|..|+..-.......... ....+.++. ..+.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G~eV~~L~~~~~~~~~s~~~h-------~~~~e~a~~----~A~~-------- 61 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NRFSVKFLVTMVSENEESYMYH-------TINANLTDL----QARA-------- 61 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECC---------------CCSSSHHHH----HHHH--------
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEEcCCCCCccccC-------CccHHHHHH----HHHH--------
Confidence 5899999999999988877654 4677776654322110000000 000011111 1111
Q ss_pred hhhhhhhCCCceEEEEEecC--ChHHHHHHHHHHcCCCEEEEeecC
Q 025835 119 LAQPLVEAQIPFKIHIVKDH--DMKERLCLEVERLGLSAVIMGSRG 162 (247)
Q Consensus 119 ~~~~~~~~~v~v~~~v~~g~--d~~~~I~~~a~~~~~DLIVmGs~g 162 (247)
.|+++.+.-..+. +-.+.+.+..++.+++.+|.|.--
T Consensus 62 -------LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 62 -------LGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp -------HTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---
T ss_pred -------cCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 1788766655542 234566777777789999999753
Done!