BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025836
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF
LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA
IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT
ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWR
PFREGFL

High Scoring Gene Products

Symbol, full name Information P value
HST
AT3G05040 		protein from Arabidopsis thaliana 5.6e-80

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025836
        (247 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114784 - symbol:HST "AT3G05040" species:3702 ...   808  5.6e-80   1


>TAIR|locus:2114784 [details] [associations]
            symbol:HST "AT3G05040" species:3702 "Arabidopsis
            thaliana" [GO:0005487 "nucleocytoplasmic transporter activity"
            evidence=NAS] [GO:0005635 "nuclear envelope" evidence=NAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0048364 "root development" evidence=IMP]
            [GO:0035281 "pre-miRNA export from nucleus" evidence=IMP;TAS]
            [GO:0009910 "negative regulation of flower development"
            evidence=IMP] [GO:0009944 "polarity specification of
            adaxial/abaxial axis" evidence=IMP] [GO:0009965 "leaf
            morphogenesis" evidence=IMP] [GO:0048367 "shoot system development"
            evidence=IMP] InterPro:IPR016024 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
            InterPro:IPR011989 GO:GO:0048364 EMBL:AC009465 GO:GO:0009965
            GO:GO:0009910 GO:GO:0009944 EMBL:AY198396 EMBL:AK229239
            IPI:IPI00538571 RefSeq:NP_187155.2 UniGene:At.40739
            ProteinModelPortal:Q0WP44 IntAct:Q0WP44 STRING:Q0WP44 PaxDb:Q0WP44
            PRIDE:Q0WP44 EnsemblPlants:AT3G05040.1 GeneID:819666
            KEGG:ath:AT3G05040 TAIR:At3g05040 eggNOG:NOG296759
            HOGENOM:HOG000030502 InParanoid:Q0WP44 KO:K14289 OMA:AWLLEPL
            PhylomeDB:Q0WP44 ProtClustDB:CLSN2681553 Genevestigator:Q0WP44
            GO:GO:0035281 InterPro:IPR013598 Pfam:PF08389 Uniprot:Q0WP44
        Length = 1202

 Score = 808 (289.5 bits), Expect = 5.6e-80, P = 5.6e-80
 Identities = 160/219 (73%), Positives = 182/219 (83%)

Query:     1 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
             MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct:   960 MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query:    61 LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
             LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct:  1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query:   121 IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
             +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct:  1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139

Query:   181 ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
             +SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct:  1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      247       247   0.00078  114 3  11 22  0.40    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  167 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.34u 0.08s 20.42t   Elapsed:  00:00:01
  Total cpu time:  20.34u 0.08s 20.42t   Elapsed:  00:00:01
  Start:  Sat May 11 04:50:13 2013   End:  Sat May 11 04:50:14 2013

Back to top