BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025836
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
          Length = 1204

 Score = 35.4 bits (80), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 1    MEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSM 57
            +EE+L+R LTRE+  L++    S     ++  PP +        + +   ++   A   +
Sbjct: 957  LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDD-----EEMMATEVTPSAMAEL 1011

Query: 58   VGF---LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVS 114
                  L+KH+D+    L  +  +  W D  +  + +S     +L  + S  + L   V+
Sbjct: 1012 TDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAVT 1070

Query: 115  KDLFSAIIRGLALES-NAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAF 173
              LF+++++GL +   +    A LV L  +I+  +  R    R V+  +P I    L  F
Sbjct: 1071 W-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQF 1129

Query: 174  E-----DALTKTASPREQKQHMRSLLVSG 197
            +      +L K A  R + Q  R  L++G
Sbjct: 1130 DCKLLNPSLQKVADKRRKDQFKR--LIAG 1156


>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
           Aquifex Aeolicus Vf5
 pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
           Aquifex Aeolicus Vf5
          Length = 195

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 17/62 (27%)

Query: 1   MEEKLLRDLTREICSLL-----STMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASK 55
           +EEK++ DL R+   +L     ST+A  G   G+            DV F+K+L+ FA++
Sbjct: 72  IEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGL------------DVEFIKNLNEFATR 119

Query: 56  SM 57
            +
Sbjct: 120 GV 121


>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
           From Agrobacterium Tumefaciens
 pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
           From Agrobacterium Tumefaciens
          Length = 259

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 14/86 (16%)

Query: 168 QDLLAFEDALTKTAS------PREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS-- 219
           Q  L FED  T+ A       P E+  +   L   G GN+ + L  +  VNVIT + S  
Sbjct: 9   QQYLKFEDERTRPARDLLAQVPLERVLNGYDLGC-GPGNSTELLTDRYGVNVITGIDSDD 67

Query: 220 ----HAAQIMPQKIELKRGNLLDWRP 241
                AA  +P      + +L  W+P
Sbjct: 68  DXLEKAADRLPN-TNFGKADLATWKP 92


>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
 pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
 pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
           Chloro-3-Indolyl-A-D-Mannose
 pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
           Chloro-3-Indolyl-A-D-Mannose
          Length = 447

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 188 QHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHA 221
           +H++S  +SGT  N K      S++ ITNV+ H 
Sbjct: 224 EHLKS--ISGTYGNYKGFEVVTSLSFITNVTKHG 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,187,441
Number of Sequences: 62578
Number of extensions: 211443
Number of successful extensions: 569
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 12
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)