BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025836
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1
Length = 1202
Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/219 (73%), Positives = 182/219 (83%)
Query: 1 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
MEEKLLRDLTREI +L STMAS GLN G+P +E SGH RVD+ L DL AF S SMVGF
Sbjct: 960 MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019
Query: 61 LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
LL HK +ALPALQI LE FTWTDGEA TKV FC VVLLA +NN+EL++FVSKD+FSA
Sbjct: 1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079
Query: 121 IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A KT
Sbjct: 1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139
Query: 181 ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
+SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct: 1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178
>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1
Length = 1135
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%)
Query: 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPC 164
N+ + + + ++F I+ L + A S D+ + R I++ P+++LLSLP
Sbjct: 1002 NDPKFFKLIGSEMFGCCIKILIVNKFAEFSNDIQSIIRLIYMKYYQICNYPQEILLSLPN 1061
Query: 165 ITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQ 208
ITP L AF L T S + QK + LL G L L +
Sbjct: 1062 ITPPILQAFNKDLISTRSEKSQKVLFKKLLQDVIGIPLNKLKKE 1105
>sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1
Length = 1204
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 61 LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
L+KH+D+ L + + TW D + + ++ +L + S + L V+ LF++
Sbjct: 1018 LMKHEDVCTALLITAFNSLTWKDTLSCQRATTQLCWPLLKQVMSGTL-LADAVTW-LFTS 1075
Query: 121 IIRGLALES-NAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL-- 177
+++GL + + A LV L +I+ + R R V+ +P I + L F+ L
Sbjct: 1076 VLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEINKESLDQFDCKLLN 1135
Query: 178 --TKTASPREQKQHMRSLLVSGTGNNL 202
+ A+ + +K H + L+ G L
Sbjct: 1136 PSLQKAADKRRKDHFKRLIAGCIGKPL 1162
>sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1
Length = 1204
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 1 MEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSM 57
+EE+L+R LTRE+ L++ S ++ PP + + + ++ A +
Sbjct: 957 LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDD-----EEMMATEVTPSAMAEL 1011
Query: 58 VGF---LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVS 114
L+KH+D+ L + + W D + + +S +L + S + L V+
Sbjct: 1012 TDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAVT 1070
Query: 115 KDLFSAIIRGLALES-NAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAF 173
LF+++++GL + + A LV L +I+ + R R V+ +P I L F
Sbjct: 1071 W-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQF 1129
Query: 174 E-----DALTKTASPREQKQHMRSLLVSG 197
+ +L K A R + Q R L++G
Sbjct: 1130 DCKLLNPSLQKVADKRRKDQFKR--LIAG 1156
>sp|Q5VWM4|PRAM8_HUMAN PRAME family member 8 OS=Homo sapiens GN=PRAMEF8 PE=2 SV=1
Length = 474
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 IPPIEQSGHFNRVDVLFLKDLDAFASKSM--VGFLLKHKDLALPALQISLEAFTWTD--- 83
IPP + R FLK LD F + SM V FL H D L LQ SLE TD
Sbjct: 246 IPPDNKGQFIARFTSQFLK-LDYFQNLSMHSVSFLEGHLDQLLRCLQASLEMVVMTDCLL 304
Query: 84 GEAVTKVSSFCSAV 97
E+ K S+C ++
Sbjct: 305 SESDLKHLSWCPSI 318
>sp|Q5VXH5|PRAM7_HUMAN PRAME family member 7 OS=Homo sapiens GN=PRAMEF7 PE=2 SV=1
Length = 474
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 IPPIEQSGHFNRVDVLFLKDLDAFASKSM--VGFLLKHKDLALPALQISLEAFTWTD--- 83
IPP + R FLK LD F + SM V FL H D L LQ SLE TD
Sbjct: 246 IPPDNKGQFIARFTSQFLK-LDYFQNLSMHSVSFLEGHLDQLLRCLQASLEMVVMTDCLL 304
Query: 84 GEAVTKVSSFCSAV 97
E+ K S+C ++
Sbjct: 305 SESDLKHLSWCPSI 318
>sp|A6NMC2|PRA24_HUMAN Putative PRAME family member 24 OS=Homo sapiens GN=PRAMEF24 PE=2
SV=1
Length = 474
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 IPPIEQSGHFNRVDVLFLKDLDAFASKSM--VGFLLKHKDLALPALQISLEAFTWTD--- 83
IPP + R FLK LD F + SM V FL H D L LQ SLE TD
Sbjct: 246 IPPDNKGQFIARFTSQFLK-LDYFQNLSMHSVSFLEGHLDQLLRCLQASLEMVVMTDCLL 304
Query: 84 GEAVTKVSSFCSAV 97
E+ K S+C ++
Sbjct: 305 SESDLKHLSWCPSI 318
>sp|Q3TTL0|CC038_MOUSE Uncharacterized protein C3orf38 homolog OS=Mus musculus PE=2 SV=1
Length = 348
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 154 APRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNL-----KALAAQ 208
AP VL P DL AF + +T SP E + ++R ++ SGTG+ + +AL +
Sbjct: 279 APESVLKPSVTFEPSDLEAFYNVITLCNSP-EVRPNVRQIIDSGTGDQVLHSGDEALLNK 337
Query: 209 KSVNVIT 215
+ +N++T
Sbjct: 338 REMNLLT 344
>sp|P23643|VPS3_YEAST Vacuolar protein sorting-associated protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS3 PE=1
SV=1
Length = 1011
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 155 PRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVI 214
PR V++ P I + AF+ +A P E+ Q ++S+ SG+ L KS NV
Sbjct: 367 PRNVIVEFPYIIAES--AFQSVDIYSALPSEKSQLLQSITTSGSD-----LKISKSDNVF 419
Query: 215 TNVSS 219
TN ++
Sbjct: 420 TNTNN 424
>sp|Q3ZWJ9|COBB_DEHSC Cobyrinic acid A,C-diamide synthase OS=Dehalococcoides sp. (strain
CBDB1) GN=cobB PE=3 SV=1
Length = 463
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 47 KDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAV 97
K ++ +AS ++G+LL++KDL +P + L+ T GE T + + + +
Sbjct: 165 KAIEKYASTPVIGYLLRNKDLVIPERHLGLKT-TSEGGELETFIQNLATRI 214
>sp|Q3ZA71|COBB_DEHE1 Cobyrinic acid A,C-diamide synthase OS=Dehalococcoides ethenogenes
(strain 195) GN=cobB PE=3 SV=1
Length = 463
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 32 IEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVS 91
+ Q+G ++ K ++ + S +VG+LL++K+LA+P + L+ T GE + +
Sbjct: 151 LNQAGSLRHYEIC-RKAIEKYTSTPVVGYLLRNKELAIPERHLGLKT-TSEGGELASFIQ 208
Query: 92 SFCSAV 97
+ + +
Sbjct: 209 NLAAHI 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,417,632
Number of Sequences: 539616
Number of extensions: 2893256
Number of successful extensions: 7101
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7096
Number of HSP's gapped (non-prelim): 12
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)