Query 025836
Match_columns 247
No_of_seqs 116 out of 141
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08767 CRM1_C: CRM1 C termin 83.4 39 0.00084 31.4 13.8 92 107-198 202-315 (319)
2 PF13660 DUF4147: Domain of un 81.4 1.8 4E-05 39.0 3.8 75 158-232 129-207 (238)
3 PF11865 DUF3385: Domain of un 77.1 19 0.0004 30.2 8.4 45 108-152 78-122 (160)
4 COG2379 GckA Putative glycerat 68.6 11 0.00023 36.7 5.4 77 158-234 125-205 (422)
5 cd05167 PI4Kc_III_alpha Phosph 66.2 29 0.00064 32.5 7.8 69 133-201 222-295 (311)
6 PTZ00444 hypothetical protein; 63.1 19 0.00042 31.3 5.5 76 112-187 13-88 (184)
7 KOG2022 Nuclear transport rece 59.7 1E+02 0.0023 33.0 11.0 84 113-200 884-977 (982)
8 PF04675 DNA_ligase_A_N: DNA l 55.4 28 0.00061 28.9 5.2 67 134-207 87-156 (177)
9 PF05004 IFRD: Interferon-rela 49.7 2.2E+02 0.0047 26.4 11.2 96 91-196 205-307 (309)
10 cd00893 PI4Kc_III Phosphoinosi 48.6 68 0.0015 29.7 7.0 86 111-200 182-272 (289)
11 cd05174 PI3Kc_IA_delta Phospho 47.9 50 0.0011 31.6 6.1 69 133-201 273-347 (361)
12 PRK14707 hypothetical protein; 46.8 1.3E+02 0.0027 35.7 9.6 124 55-195 438-568 (2710)
13 cd05168 PI4Kc_III_beta Phospho 45.1 74 0.0016 29.5 6.7 69 132-200 200-276 (293)
14 PF12717 Cnd1: non-SMC mitotic 41.5 2.1E+02 0.0045 23.9 10.8 131 54-198 9-156 (178)
15 PRK10702 endonuclease III; Pro 40.1 1E+02 0.0022 27.1 6.4 58 114-173 68-125 (211)
16 cd00891 PI3Kc Phosphoinositide 39.9 1.1E+02 0.0023 29.1 7.1 88 111-202 247-340 (352)
17 cd05166 PI3Kc_II Phosphoinosit 39.8 1.3E+02 0.0027 28.7 7.5 70 132-201 265-340 (353)
18 cd00895 PI3Kc_C2_beta Phosphoi 39.2 85 0.0018 30.0 6.2 71 132-202 266-342 (354)
19 cd05165 PI3Kc_I Phosphoinositi 38.9 95 0.0021 29.8 6.5 71 131-201 276-352 (366)
20 cd00896 PI3Kc_III Phosphoinosi 38.8 1.2E+02 0.0026 28.9 7.1 73 133-205 259-339 (350)
21 cd05176 PI3Kc_C2_alpha Phospho 38.5 1.1E+02 0.0024 29.3 6.8 71 133-203 266-342 (353)
22 PF02637 GatB_Yqey: GatB domai 38.4 2.1E+02 0.0046 23.1 8.1 51 164-216 39-90 (148)
23 KOG2020 Nuclear transport rece 37.5 84 0.0018 34.3 6.5 25 2-26 829-853 (1041)
24 cd05177 PI3Kc_C2_gamma Phospho 35.6 94 0.002 29.7 5.9 67 133-199 267-339 (354)
25 PF12783 Sec7_N: Guanine nucle 35.4 1.5E+02 0.0033 24.3 6.6 78 107-199 64-146 (168)
26 cd00894 PI3Kc_IB_gamma Phospho 33.9 1.1E+02 0.0023 29.5 6.0 68 133-200 277-350 (365)
27 PRK09614 nrdF ribonucleotide-d 33.4 1.5E+02 0.0033 27.3 6.9 70 105-179 196-265 (324)
28 cd05173 PI3Kc_IA_beta Phosphoi 30.0 97 0.0021 29.7 5.0 70 132-201 272-347 (362)
29 PRK09169 hypothetical protein; 29.7 2.7E+02 0.0059 33.1 9.0 122 55-192 228-355 (2316)
30 cd00056 ENDO3c endonuclease II 28.9 2.6E+02 0.0056 22.5 6.9 61 116-179 42-105 (158)
31 PF13495 Phage_int_SAM_4: Phag 27.7 45 0.00098 23.7 1.9 61 133-202 18-83 (85)
32 COG0208 NrdF Ribonucleotide re 26.7 2.2E+02 0.0048 27.1 6.8 72 105-179 219-290 (348)
33 PRK07209 ribonucleotide-diphos 25.9 2.1E+02 0.0045 27.2 6.5 72 105-179 246-318 (369)
34 TIGR01083 nth endonuclease III 24.8 3.5E+02 0.0076 22.9 7.2 61 115-177 66-126 (191)
35 cd05175 PI3Kc_IA_alpha Phospho 24.4 1.8E+02 0.0039 28.0 5.7 71 131-201 276-352 (366)
36 PF06479 Ribonuc_2-5A: Ribonuc 24.0 60 0.0013 26.5 2.2 37 127-163 56-92 (129)
37 PF04255 DUF433: Protein of un 23.5 1.7E+02 0.0036 20.0 4.1 31 143-174 23-53 (56)
38 PRK14707 hypothetical protein; 22.4 4.9E+02 0.011 31.3 9.2 124 72-212 291-419 (2710)
39 PRK12759 bifunctional gluaredo 21.2 2.7E+02 0.0059 26.8 6.4 72 105-179 280-353 (410)
40 COG0177 Nth Predicted EndoIII- 21.1 1.6E+02 0.0035 26.1 4.4 53 114-168 68-120 (211)
41 PF01736 Polyoma_agno: Polyoma 20.6 95 0.0021 22.0 2.3 16 58-77 27-42 (62)
42 KOG2583 Ubiquinol cytochrome c 20.5 1.9E+02 0.0042 28.3 5.1 26 154-179 384-409 (429)
43 PF00633 HHH: Helix-hairpin-he 20.3 1.4E+02 0.003 18.1 2.7 21 153-173 7-27 (30)
44 PF05918 API5: Apoptosis inhib 20.1 74 0.0016 32.3 2.3 21 4-24 185-205 (556)
45 PF02371 Transposase_20: Trans 20.0 78 0.0017 23.4 1.9 26 157-182 2-27 (87)
46 smart00580 PUG domain in prote 20.0 1E+02 0.0022 21.5 2.4 32 133-164 2-35 (58)
No 1
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=83.37 E-value=39 Score=31.43 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=54.4
Q ss_pred hhHHHHHHH---HHHHHHHHHhcccchHhhHHHHHHHHHHHHHH------hcCCCc-----------cHHHHHHh-CCCC
Q 025836 107 IELQQFVSK---DLFSAIIRGLALESNAVISADLVGLCREIFIY------MCDRDP-----------APRQVLLS-LPCI 165 (247)
Q Consensus 107 ~~l~efi~~---ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~------l~p~~~-----------~pr~VL~s-LP~I 165 (247)
+...+|... ++++-++..|+|+......+.-..+++.++.. =.|..+ ...+.|.+ -|++
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l 281 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNL 281 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCC
Confidence 334444443 34555556666665555444444444444422 112222 23345554 4999
Q ss_pred CHHhHHHHHHHHhcCCC-hHHHHHHHHHHHhccC
Q 025836 166 TPQDLLAFEDALTKTAS-PREQKQHMRSLLVSGT 198 (247)
Q Consensus 166 ~~~~l~~f~~~L~~~~s-~K~QR~l~~~LL~~~~ 198 (247)
+++.+..|-..|-+... ...=|.+++|||-.++
T Consensus 282 ~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 282 SPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp -HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 99999999999977654 7777999999998765
No 2
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=81.41 E-value=1.8 Score=38.96 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=49.7
Q ss_pred HHHhCC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHh-hhcccc-cccccccccccccccccccc
Q 025836 158 VLLSLP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALA-AQKSVN-VITNVSSHAAQIMPQKIELK 232 (247)
Q Consensus 158 VL~sLP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~-~~k~~~-~i~~v~~~~~~~~~~~~~~~ 232 (247)
=|+.+| ||+-+|+.++.+.|.+.+.+-++=+.+++-|..+||-.|-..+ ..+-.+ ++.||---+...-..|++.-
T Consensus 129 ALl~~P~~gisLed~~~~~~~Ll~sGa~I~EiN~VRkhLS~vKGG~La~~~~~a~v~sLilSDV~Gd~l~~IaSGPt~p 207 (238)
T PF13660_consen 129 ALLELPADGISLEDKQELTKLLLRSGADIHEINTVRKHLSRVKGGRLARAAAPARVVSLILSDVPGDDLSVIASGPTVP 207 (238)
T ss_dssp HHS--B-TT--HHHHHHHHHHHHHCT--HHHHHHHHHTTBSSTTTHHHHCHTTSEEEEEEE--STT--TTTGGG-TTS-
T ss_pred HhhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCchHHHHHhcCCeEEEEEecCCCCCChhhcccCCccC
Confidence 455555 8999999999999999999999999999999999999988776 333333 78888877776443344443
No 3
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.05 E-value=19 Score=30.20 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCC
Q 025836 108 ELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD 152 (247)
Q Consensus 108 ~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~ 152 (247)
..+||..+-++.++++.|.|++...+|...++.+..||..++.++
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c 122 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC 122 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc
Confidence 578999999999999999999999999999999999998887764
No 4
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=68.55 E-value=11 Score=36.66 Aligned_cols=77 Identities=30% Similarity=0.407 Sum_probs=62.1
Q ss_pred HHHhCC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHhh-hccc-cccccccccccccccccccccc
Q 025836 158 VLLSLP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAA-QKSV-NVITNVSSHAAQIMPQKIELKR 233 (247)
Q Consensus 158 VL~sLP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~~-~k~~-~~i~~v~~~~~~~~~~~~~~~~ 233 (247)
-|+.+| ||+-+|+......|.+++..=.-=+.++|=|..+||-.|.+.+. .|-. -+|.||---+.+.-..|++..|
T Consensus 125 aL~e~P~eGitL~d~~avn~~LL~sGA~I~emNtVRkhLS~VKGGrLA~a~~pA~VvsliiSDVpGDd~~~IASGPTv~D 204 (422)
T COG2379 125 ALLELPAEGITLEDLIAVNRALLKSGAPISEMNTVRKHLSRVKGGRLAAAAKPAKVVSLIISDVPGDDPSVIASGPTVPD 204 (422)
T ss_pred hhccCCccCCCHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccchHHHHhcCCCeEEEEEEccCCCCCHhhcccCCCCCC
Confidence 578899 99999999999999999888888899999999999999887763 3333 2788888877775444556655
Q ss_pred C
Q 025836 234 G 234 (247)
Q Consensus 234 ~ 234 (247)
.
T Consensus 205 ~ 205 (422)
T COG2379 205 P 205 (422)
T ss_pred C
Confidence 4
No 5
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=66.25 E-value=29 Score=32.46 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
.......+|...|..+|......-.++. .+|+++.+++..+.+.+.-..++++....|.+++..+.+.-
T Consensus 222 ~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~ 295 (311)
T cd05167 222 PFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKF 295 (311)
T ss_pred hHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhch
Confidence 4567888999999999987776555443 58999999999999999888899999999999999887653
No 6
>PTZ00444 hypothetical protein; Provisional
Probab=63.13 E-value=19 Score=31.26 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhcCCChHHHH
Q 025836 112 FVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQK 187 (247)
Q Consensus 112 fi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~~~s~K~QR 187 (247)
+++.+=+.||+.-++--...++|.+++.=++.=+-.=...-|+|+||-..+-.|..+++++++..+.+..+...++
T Consensus 13 ~~~~~~~~a~l~p~~~k~~~~~q~~iikDia~e~k~~~e~lPt~~~v~~~~~~id~e~~~kl~~~i~~ee~~~~~k 88 (184)
T PTZ00444 13 VFSYINFSACLLPWTKKRKAENQMGLIKDIAKELKLASETLPTPEQVSAKIHRIDKEVIKKLDKDIIKEENEDKKK 88 (184)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888877766666777776666666555555556799999999999999999999999998866554554
No 7
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.68 E-value=1e+02 Score=33.00 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHH----hCC-----CCCHHhHHHHHHHHhcCC-C
Q 025836 113 VSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLL----SLP-----CITPQDLLAFEDALTKTA-S 182 (247)
Q Consensus 113 i~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~----sLP-----~I~~~~l~~f~~~L~~~~-s 182 (247)
++...+.+++.++.-. .....+...++|.-.|-.++.+-....+ |.| ||++++=++|-+++.+.+ +
T Consensus 884 ~G~~Li~~im~~vgg~----~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer~n 959 (982)
T KOG2022|consen 884 IGPILIYAIMRGVGGE----ASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRERGN 959 (982)
T ss_pred cchHHHHHHHHHhcCc----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHhc
Confidence 3556777777776333 2345566677777777777766544332 555 788889999999997754 5
Q ss_pred hHHHHHHHHHHHhccCCC
Q 025836 183 PREQKQHMRSLLVSGTGN 200 (247)
Q Consensus 183 ~K~QR~l~~~LL~~~~g~ 200 (247)
.|.-+++++++-..++|-
T Consensus 960 ~R~~k~~il~~~L~~~~l 977 (982)
T KOG2022|consen 960 KRNFKQQILEFNLACTGL 977 (982)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 788899999987777663
No 8
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=55.39 E-value=28 Score=28.88 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCchHHHhh
Q 025836 134 SADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA---SPREQKQHMRSLLVSGTGNNLKALAA 207 (247)
Q Consensus 134 q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~~~---s~K~QR~l~~~LL~~~~g~~l~a~~~ 207 (247)
..|+...+..++......... -+.+|-.+|..+-++|++.. +...|++++.+|+..+...+.+-+.-
T Consensus 87 ~GD~g~~~~~~~~~~~~~~~~-------~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~s~~E~k~i~R 156 (177)
T PF04675_consen 87 VGDLGEVAEEVLQKRKSETSK-------PSPLTISEVNETLDELAAASGKGSQDEKIDILKELLRRCSPEEAKWIVR 156 (177)
T ss_dssp HS-HHHHHHHHHHHHTTTS---------SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred cCcHHHHHHHHHhhccccccC-------CCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 567777777777665533222 45778889999999998754 79999999999999999999888863
No 9
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=49.72 E-value=2.2e+02 Score=26.39 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhH
Q 025836 91 SSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDL 170 (247)
Q Consensus 91 ~sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l 170 (247)
....+|-.+..... +..+. -...+.++.... |-+...++.+-....-|+.||+..+...... .-| +.++|
T Consensus 205 aAL~aW~lLlt~~~-~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~-----~~~--~~~~l 274 (309)
T PF05004_consen 205 AALSAWALLLTTLP-DSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELARDHEEDF-----LYE--DMEEL 274 (309)
T ss_pred HHHHHHHHHHhcCC-HHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhcccccc-----ccc--CHHHH
Confidence 35556655554432 22344 233444554434 3345578899999999999999988543331 011 44444
Q ss_pred HHHHHHHhcCC-------ChHHHHHHHHHHHhc
Q 025836 171 LAFEDALTKTA-------SPREQKQHMRSLLVS 196 (247)
Q Consensus 171 ~~f~~~L~~~~-------s~K~QR~l~~~LL~~ 196 (247)
-+--..|..-. .-|+||..|++++.-
T Consensus 275 ~~~l~~La~dS~K~~sKkdrk~qRs~Frdil~~ 307 (309)
T PF05004_consen 275 LEQLRELATDSSKSRSKKDRKQQRSSFRDILTT 307 (309)
T ss_pred HHHHHHHHHhccCccchhHHHHHHHHHHHHHHh
Confidence 44444443311 278999999998864
No 10
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=48.56 E-value=68 Score=29.67 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCCHHhHHHHHHHHhcCCChHH
Q 025836 111 QFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITPQDLLAFEDALTKTASPRE 185 (247)
Q Consensus 111 efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~~~~l~~f~~~L~~~~s~K~ 185 (247)
.|.=+.-|..++.+.. .+.......+|...|..+|......-.++. .+|+.+.+++..+.+.+.=..++.+
T Consensus 182 PFrLT~emv~~mGg~~----s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~ 257 (289)
T cd00893 182 AFKFTKEMVDFMGGKK----SDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKE 257 (289)
T ss_pred CeeecHHHHHHhCCCC----ChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHH
Confidence 3444444445554443 234566888999999999987776666552 5799999999999999987789999
Q ss_pred HHHHHHHHHhccCCC
Q 025836 186 QKQHMRSLLVSGTGN 200 (247)
Q Consensus 186 QR~l~~~LL~~~~g~ 200 (247)
.+..|.+++....+.
T Consensus 258 a~~~~~~lI~~s~~~ 272 (289)
T cd00893 258 AINTVMKKIDSSYNS 272 (289)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 11
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=47.87 E-value=50 Score=31.65 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
.....-.+|...|..+|......-.++. .+|+++. +++..+.+.+.-.-++.+...+|.+++..+.+.+
T Consensus 273 ~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~ 347 (361)
T cd05174 273 KFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 347 (361)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 4556788999999999977765555443 7899874 6899999999888899999999999998886555
No 12
>PRK14707 hypothetical protein; Provisional
Probab=46.84 E-value=1.3e+02 Score=35.66 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=77.8
Q ss_pred hhHHHHHhcCcccHH---H-HHHHHhhhhc-cccCcchhhhhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-ccc
Q 025836 55 KSMVGFLLKHKDLAL---P-ALQISLEAFT-WTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGL-ALE 128 (247)
Q Consensus 55 ~~L~~~iL~~~~i~~---p-lL~~~~~~l~-wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L-~~~ 128 (247)
+.|...+-.+.+.+. | =+...+++++ |.||+.|+.+...... -+..+..++.-+-..-+..||++| .-|
T Consensus 438 ~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~-----~l~~~~~l~~a~~~q~~~~~L~aLSK~P 512 (2710)
T PRK14707 438 SALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAA-----RLAHERRLRKALKPQEVVIALHSLSKWP 512 (2710)
T ss_pred HHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHH-----HhcccHHHHhhcCHHHHHHHHHHhhcCC
Confidence 345555555555542 1 1445667776 9999999998853222 223466688888888889999999 455
Q ss_pred chHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 025836 129 SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCI-TPQDLLAFEDALTKTASPREQKQHMRSLLV 195 (247)
Q Consensus 129 ~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I-~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~ 195 (247)
-+..|...+..++.++-. +. ++|.. +.+.+..+-..|.+-......|..+..+-.
T Consensus 513 d~~~c~~A~~~lA~rl~~---~~---------~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 513 DTPICAEAASALAERVVD---EL---------QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred CcHHHHHHHHHHHHHhcc---ch---------hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 555688888888777651 11 33433 777777777788664433344444444433
No 13
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=45.09 E-value=74 Score=29.50 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHHHH---H---hCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Q 025836 132 VISADLVGLCREIFIYMCDRDPAPRQVL---L---SLPCIT--PQDLLAFEDALTKTASPREQKQHMRSLLVSGTGN 200 (247)
Q Consensus 132 d~q~eL~~L~~~Iy~~l~p~~~~pr~VL---~---sLP~I~--~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~ 200 (247)
+.......+|...|..+|......-.++ . .+|..+ .+++..+.+.+.-.-++++....|.+++..+.+.
T Consensus 200 ~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~ 276 (293)
T cd05168 200 DLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDN 276 (293)
T ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999998877665544 3 467777 7799999999988788999999999999998765
No 14
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=41.55 E-value=2.1e+02 Score=23.86 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=69.8
Q ss_pred hhhHHHHHhcCcccHHHHHHHHhhhhccccCcchhhhh-hhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcccchHh
Q 025836 54 SKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVS-SFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAV 132 (247)
Q Consensus 54 ~~~L~~~iL~~~~i~~plL~~~~~~l~wkDt~~~~~~~-sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L~~~~f~d 132 (247)
...|+.++...+++++|.+-.....|.=.|.. +.+.+ ...+-|+..... .+ -..+|...+..|.|+
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~-VR~~al~~Ls~Li~~d~i----k~----k~~l~~~~l~~l~D~---- 75 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDEDPL-VRKTALLVLSHLILEDMI----KV----KGQLFSRILKLLVDE---- 75 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCce----ee----hhhhhHHHHHHHcCC----
Confidence 36789999999999999999999998855433 33333 333333322111 11 233445555666555
Q ss_pred hHHHHHHHHHHHHHHhcCC-Ccc-----HHHHHHhCC---------CCCHHhHHHHHHHHhcCCC-hHHHHHHHHHHHhc
Q 025836 133 ISADLVGLCREIFIYMCDR-DPA-----PRQVLLSLP---------CITPQDLLAFEDALTKTAS-PREQKQHMRSLLVS 196 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~-~~~-----pr~VL~sLP---------~I~~~~l~~f~~~L~~~~s-~K~QR~l~~~LL~~ 196 (247)
..+....+...+..+..+ ++. .-+.+..+. +.+.++-...++.|.+-=+ +|++-.++.+|...
T Consensus 76 -~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 76 -NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQR 154 (178)
T ss_pred -CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 333444444444333322 222 112233322 2445555555666654333 67777777766665
Q ss_pred cC
Q 025836 197 GT 198 (247)
Q Consensus 197 ~~ 198 (247)
..
T Consensus 155 ~~ 156 (178)
T PF12717_consen 155 FL 156 (178)
T ss_pred HH
Confidence 53
No 15
>PRK10702 endonuclease III; Provisional
Probab=40.07 E-value=1e+02 Score=27.11 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHH
Q 025836 114 SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAF 173 (247)
Q Consensus 114 ~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f 173 (247)
..+=+..+|+++.- +.-=-+-|..++..|...+....|..++-|++||||-++--+-.
T Consensus 68 ~~~~l~~~i~~~G~--y~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGVG~ktA~~i 125 (211)
T PRK10702 68 GVEGVKTYIKTIGL--YNSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVV 125 (211)
T ss_pred CHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCcccHHHHHHH
Confidence 34556777776632 21112236666667777777788999999999999999855443
No 16
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=39.91 E-value=1.1e+02 Score=29.14 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCCH-HhHHHHHHHHhcCCChH
Q 025836 111 QFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITP-QDLLAFEDALTKTASPR 184 (247)
Q Consensus 111 efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~~-~~l~~f~~~L~~~~s~K 184 (247)
.|.=+.-|-.++.+...+ .......+|...|..+|......-.++. .+|++++ +++..+.+.+.-..+++
T Consensus 247 PFrLT~~mv~~mGg~~s~----~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~~~i~~l~~r~~l~~s~~ 322 (352)
T cd00891 247 PFVLTPDMAYVMGGGDSE----KFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSIEDIEYLRDALALDKSDE 322 (352)
T ss_pred CeeecHHHHHHhCCCCCc----ccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcHHHHHHHHHHhCCCCCHH
Confidence 344444444555544322 3456778888999999977766666543 3899885 69999999998888999
Q ss_pred HHHHHHHHHHhccCCCch
Q 025836 185 EQKQHMRSLLVSGTGNNL 202 (247)
Q Consensus 185 ~QR~l~~~LL~~~~g~~l 202 (247)
+....|.+++..+.+.--
T Consensus 323 ~a~~~~~~lI~~s~~~~~ 340 (352)
T cd00891 323 EATEYFRKLIHESLNSKT 340 (352)
T ss_pred HHHHHHHHHHHHHHhcch
Confidence 999999999998876653
No 17
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=39.75 E-value=1.3e+02 Score=28.73 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCC-HHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 132 VISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 132 d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~-~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
+.......+|...|..+|......-.++. .||+++ .+++..+.+.+.-.-++.+....|.+++..+.+.-
T Consensus 265 ~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s~ 340 (353)
T cd05166 265 QRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGSA 340 (353)
T ss_pred chHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 35567888899999999977776655442 478998 77999999999887889999999999999887543
No 18
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=39.24 E-value=85 Score=30.03 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHH---HHH--hCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCch
Q 025836 132 VISADLVGLCREIFIYMCDRDPAPRQ---VLL--SLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNL 202 (247)
Q Consensus 132 d~q~eL~~L~~~Iy~~l~p~~~~pr~---VL~--sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l 202 (247)
+.......+|...|..+|......-. .|. .+|+++. +++..+.+.+.-..++.+...+|.+++....+.-.
T Consensus 266 ~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~~i~~l~~rf~l~~se~eA~~~f~~lI~~s~~s~~ 342 (354)
T cd00895 266 SRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLEDLKYVYDALRPQDTEADATTYFTRLIESSLGSVA 342 (354)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 45677889999999999977765544 343 5899975 58999999998878899999999999998876443
No 19
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=38.89 E-value=95 Score=29.78 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=55.8
Q ss_pred HhhHHHHHHHHHHHHHHhcCCCccHHHH---H--HhCCCCC-HHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 131 AVISADLVGLCREIFIYMCDRDPAPRQV---L--LSLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 131 ~d~q~eL~~L~~~Iy~~l~p~~~~pr~V---L--~sLP~I~-~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
.+.....-.+|...|..+|......-.+ | ..+|+++ .+++..+.+.+.=..++.+....|.+++..+.+.+
T Consensus 276 s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~ 352 (366)
T cd05165 276 SEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTSKEDIEYLRDTLALGKSEEEALKYFLDKFNEALDGS 352 (366)
T ss_pred ChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3456778889999999999776544433 3 2589888 66999999999887889999999999999886544
No 20
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=38.79 E-value=1.2e+02 Score=28.86 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCC---HHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHH
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCIT---PQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKA 204 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~---~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a 204 (247)
.......+|...|..+|......-.++. .+|+++ .+++..+.+++.-.-++++..+.|.+++....+.-...
T Consensus 259 ~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~~lI~~s~~~~~t~ 338 (350)
T cd00896 259 GYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQNLINDSVNALFPV 338 (350)
T ss_pred chHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence 3457788899999999977766655443 388887 56899999999887889999999999999877665444
Q ss_pred H
Q 025836 205 L 205 (247)
Q Consensus 205 ~ 205 (247)
+
T Consensus 339 ~ 339 (350)
T cd00896 339 V 339 (350)
T ss_pred H
Confidence 3
No 21
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=38.50 E-value=1.1e+02 Score=29.29 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHH---H--hCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchH
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLK 203 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL---~--sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~ 203 (247)
.......+|...|..+|......-.++ . .+|+++. +++..+.+.+.-..++.+....|.++|....+.-..
T Consensus 266 ~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t 342 (353)
T cd05176 266 RFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATIFFTRLIESSLGSVAT 342 (353)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhH
Confidence 455678899999999997766544432 2 5898875 689999999987778999999999999988765433
No 22
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=38.37 E-value=2.1e+02 Score=23.10 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=37.7
Q ss_pred CCCHHhHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCCchHHHhhhcccccccc
Q 025836 164 CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITN 216 (247)
Q Consensus 164 ~I~~~~l~~f~~~L~~~~-s~K~QR~l~~~LL~~~~g~~l~a~~~~k~~~~i~~ 216 (247)
.|+++++..+-..+.+.. +.+.-|.++..++.. |.+..++.+......+.+
T Consensus 39 ~i~~~~l~~li~l~~~~~Is~~~ak~ll~~~~~~--~~~~~~ii~~~~l~~i~d 90 (148)
T PF02637_consen 39 PISPEHLAELINLLEDGKISKKSAKELLRELLEN--GKSPEEIIEENGLWQISD 90 (148)
T ss_dssp SSTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH--TS-HHHHHHHTT---B--
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCCHHHHHHHcCCCcCCC
Confidence 589999999999887765 577788899888877 888899988887777765
No 23
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.47 E-value=84 Score=34.29 Aligned_cols=25 Identities=32% Similarity=0.079 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCC
Q 025836 2 EEKLLRDLTREICSLLSTMASSGLN 26 (247)
Q Consensus 2 eE~lLRqLTr~vv~ll~~~~~p~~~ 26 (247)
|++.-+-+++++..+....+..+.+
T Consensus 829 e~~~~f~~lle~l~~~~~~~~~~l~ 853 (1041)
T KOG2020|consen 829 EHRLNFLLLLEALLLFCFPAFSELP 853 (1041)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHcCC
Confidence 6778888999999888666665543
No 24
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=35.59 E-value=94 Score=29.67 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHH-----hCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTG 199 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL~-----sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g 199 (247)
.......+|...|..+|......-.++. .+|+++. +|+..+.+.++=..++.+....|.++|..+.+
T Consensus 267 ~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~ 339 (354)
T cd05177 267 RFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATSYFTKKIKESLE 339 (354)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 3456677888888888877766555432 6899976 58999999998888999999999999998875
No 25
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.45 E-value=1.5e+02 Score=24.30 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHH----hcCC-
Q 025836 107 IELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL----TKTA- 181 (247)
Q Consensus 107 ~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L----~~~~- 181 (247)
+.+..-+..++++++++.+..+. .....-.+.++..+|..+++.-.. +++-|-..+ .+++
T Consensus 64 ~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~--------------ele~~l~~i~~~il~~~~ 128 (168)
T PF12783_consen 64 PSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKL--------------ELEVFLSHIILRILESDN 128 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHccCC
Confidence 35556666777777776554444 334555777777777777644222 233333333 2322
Q ss_pred ChHHHHHHHHHHHhccCC
Q 025836 182 SPREQKQHMRSLLVSGTG 199 (247)
Q Consensus 182 s~K~QR~l~~~LL~~~~g 199 (247)
+.-.||.++++.+...-.
T Consensus 129 ~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 129 SSLWQKELALEILRELCK 146 (168)
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 345699999998887643
No 26
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=33.85 E-value=1.1e+02 Score=29.45 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHH---HH--HhCCCCC-HHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQ---VL--LSLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVSGTGN 200 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~---VL--~sLP~I~-~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~ 200 (247)
.......+|...|..+|......-. .| ..+|+++ .+++..+.+.|.-..|+.+..++|+++|..+..+
T Consensus 277 ~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~ 350 (365)
T cd00894 277 HFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDK 350 (365)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567888999999999976654433 33 2588887 4689999999988889999999999999987544
No 27
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=33.43 E-value=1.5e+02 Score=27.31 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=54.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhc
Q 025836 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~ 179 (247)
.|..++-.++..+++..++-..+....+.+.++..++.+.|.. .....+.++- +.| +.+++.+|.+..++
T Consensus 196 RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~---E~~~~~~~~~-~~G-~~~~~~~yi~y~an 265 (324)
T PRK09614 196 RDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYEN---EEAYTELLYD-IVG-LAEDVKKYIRYNAN 265 (324)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHC-cCC-CHHHHHHHHHHHHH
Confidence 5667888888888888887666665666788888888888866 4455666665 999 99999999998877
No 28
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=29.99 E-value=97 Score=29.67 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHHHH-----HhCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 132 VISADLVGLCREIFIYMCDRDPAPRQVL-----LSLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 132 d~q~eL~~L~~~Iy~~l~p~~~~pr~VL-----~sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
+.....-.+|...|..+|......-.++ ..+|+++. +++..+.+.|.=..++++....|++++..+...+
T Consensus 272 ~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~ 347 (362)
T cd05173 272 EKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFRQKFDEALRES 347 (362)
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3556788899999999997665544432 35898875 5899999999888899999999999999876554
No 29
>PRK09169 hypothetical protein; Validated
Probab=29.73 E-value=2.7e+02 Score=33.07 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred hhHHHHHhcCcccH----HHHHHHHhhhhc-cccCcchhhhhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-ccc
Q 025836 55 KSMVGFLLKHKDLA----LPALQISLEAFT-WTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGL-ALE 128 (247)
Q Consensus 55 ~~L~~~iL~~~~i~----~plL~~~~~~l~-wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L-~~~ 128 (247)
..|.+.+..++... .-=+..+.++|+ |.|...|..++.-.... +..++.++.-+-..=+.++|++| ..+
T Consensus 228 ~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~r-----la~~~~lr~~~~~Q~vAN~LNALSKwp 302 (2316)
T PRK09169 228 ERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAAR-----LAREPGLRLALDPQGVANALNALSKWP 302 (2316)
T ss_pred HHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-----HhcChhhhhhcCHHHHHHHHHHHHhCC
Confidence 35667777666654 334567778887 99999999987543332 22566777777888888999999 444
Q ss_pred chHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 025836 129 SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRS 192 (247)
Q Consensus 129 ~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~~~s~K~QR~l~~~ 192 (247)
....|..-...|...+....+ | +..+++|+|.+.-..|.|=......|..+.-
T Consensus 303 ~~~~cr~aa~~LA~rL~~~~~---------l--~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~ 355 (2316)
T PRK09169 303 DTEACRQAAEALAERLAQERG---------L--LQAMNAQAVANALNALSKWPDEEACRAAAEA 355 (2316)
T ss_pred CchHHHHHHHHHHHHHHhChh---------h--hhhCCHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 444566666667776644322 1 5679999999999999985443343433333
No 30
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=28.91 E-value=2.6e+02 Score=22.48 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCC---CccHHHHHHhCCCCCHHhHHHHHHHHhc
Q 025836 116 DLFSAIIRGLALESNAVISADLVGLCREIFIYMCDR---DPAPRQVLLSLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 116 ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~---~~~pr~VL~sLP~I~~~~l~~f~~~L~~ 179 (247)
+-+..|+.+.. |. .--.-+..+++.+...+... ++..++-|++||||-+...+-+--.-..
T Consensus 42 ~~l~~~~~~~G--~~-~kA~~i~~~a~~~~~~~~~~~~~~~~~~~~L~~l~GIG~~tA~~~l~~~~~ 105 (158)
T cd00056 42 EELRELIRSLG--YR-RKAKYLKELARAIVEGFGGLVLDDPDAREELLALPGVGRKTANVVLLFALG 105 (158)
T ss_pred HHHHHHHHhcC--hH-HHHHHHHHHHHHHHHHcCCccCCCcccHHHHHcCCCCCHHHHHHHHHHHCC
Confidence 45667777766 21 12223444444444444443 3889999999999999988877665544
No 31
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=27.69 E-value=45 Score=23.74 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhcC-C----ChHHHHHHHHHHHhccCCCch
Q 025836 133 ISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT-A----SPREQKQHMRSLLVSGTGNNL 202 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~~-~----s~K~QR~l~~~LL~~~~g~~l 202 (247)
..+.-..-+.....++..+ .+..|+++++.+|-..|... + +-++-...++.|..++.+.+.
T Consensus 18 Ti~~Y~~~l~~f~~~~~~~---------~~~~it~~~i~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~~~ 83 (85)
T PF13495_consen 18 TIKNYRYHLKRFLRFLGNK---------PPDEITPEDIEQYLNYLQNERGLSPSTINQYLSALRSFFRWLLERGY 83 (85)
T ss_dssp HHHHHHHHHHHHHTTSSS-----------GGG--HHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS---
T ss_pred HHHHHHHHHHHHHHHcccC---------ccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444455544444423 56689999999999999832 2 356666778888888877653
No 32
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=26.68 E-value=2.2e+02 Score=27.12 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhc
Q 025836 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~ 179 (247)
.|..++-+....+++.....+-+....+++.+...++..+|.. .......++..+.|++.+.+.+|-+.+++
T Consensus 219 RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l~~~ave~---E~~y~~~~~~~~~Glt~d~~~~Yi~y~an 290 (348)
T COG0208 219 RDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLFKEAVEL---EKEYAEYLYPGILGLTEDLVKQYIRYNAN 290 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3555666777777877777776666666777777777777755 33444445544899999999999999987
No 33
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=25.93 E-value=2.1e+02 Score=27.22 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHH-HhCCCCCHHhHHHHHHHHhc
Q 025836 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVL-LSLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL-~sLP~I~~~~l~~f~~~L~~ 179 (247)
.|..++-.++..++..++.-..+....+.+.++..++.+.+..= ......++ .++.||+.+++.+|.+.+++
T Consensus 246 RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~~v~~l~~eav~~E---~~~~~~~~~~~i~Gl~~~~~~~Yi~y~An 318 (369)
T PRK07209 246 RDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELE---YRYARDTMPRGVLGLNASMFKDYLRFIAN 318 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCcCHHHHHHHHHHHHH
Confidence 34455555555666665543333333446777777777766541 12222222 25899999999999999886
No 34
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=24.84 E-value=3.5e+02 Score=22.91 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHH
Q 025836 115 KDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL 177 (247)
Q Consensus 115 ~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~~~L 177 (247)
.+-+..+|+++.-. .---.-+..++..|...+....+..++-|++||||-+...+-+--.-
T Consensus 66 ~~~L~~~ir~~G~~--~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~GIG~ktA~~ill~~ 126 (191)
T TIGR01083 66 LEELEEYIKSIGLY--RNKAKNIIALCRILVERYGGEVPEDREELVKLPGVGRKTANVVLNVA 126 (191)
T ss_pred HHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCCCcHHHHHHHHHHH
Confidence 34455666665322 11122344444445555666677889999999999999887776544
No 35
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=24.39 E-value=1.8e+02 Score=27.99 Aligned_cols=71 Identities=8% Similarity=0.173 Sum_probs=54.1
Q ss_pred HhhHHHHHHHHHHHHHHhcCCCccHHH---HHH--hCCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 025836 131 AVISADLVGLCREIFIYMCDRDPAPRQ---VLL--SLPCITP-QDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (247)
Q Consensus 131 ~d~q~eL~~L~~~Iy~~l~p~~~~pr~---VL~--sLP~I~~-~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (247)
.+.......+|...|..+|....-.-. .|. .+|+++. +++..+.+.+.=..++.+....|.+++..+.+.+
T Consensus 276 s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~ 352 (366)
T cd05175 276 TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYFMKQMNDAHHGG 352 (366)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 345567888999999999977654433 232 5888875 5899999999887899999999999998765443
No 36
>PF06479 Ribonuc_2-5A: Ribonuclease 2-5A; InterPro: IPR010513 The proteins listed below share a common architecture with a protein kinase homology domain (see PDOC00100 from PROSITEDOC) followed by an ~135-residue globular kinase-extension nuclease (KEN) domain made of eight helices []: - Mammalian 2-5A-dependent RNase or RNase L (EC 3.1.26.-), an interferon- induced enzyme implicated in both the molecular mechanisms of interferon action and the fundamental control of RNA stability. 2-5A-dependent RNase is a unique enzyme in that it requires 2-5A, unusual oligoadenylates with 2',5'-phosphodiester linkages. RNase L is catalytically active only after binding to an unusual activator molecule containing a 5'-phosphorylated 2', 5'-linked oligoadenylate (2-5A), in the N-terminal half. RNase L consists of three domains, namely the N-terminal ankyrin repeat domain (see PDOC50088 from PROSITEDOC), the protein kinase homology domain, and the C-terminal KEN domain [, , ]. - Eukaryotic Ire1/Ern1, an ancient transmembrane sensor of endoplasmic reticulum (ER) stress with dual protein kinase and ribonuclease activities. In response to ER stress Ire1/Ern1 catalyzes the splicing of target mRNAs in a spliceosome-independent manner. Ire1/Ern1 is a type 1 transmembrane receptor consisting of an N-terminal ER luminal domain, a transmembrane segment and a cytoplasmic region. The cytoplasmic region encompasses a protein kinase domain followed by a C-terminal KEN domain [, ]. The dimerisation of the kinase domain activates the ribonuclease function of the KEN domain [].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters, 0006397 mRNA processing; PDB: 3SDJ_D 3FBV_L 3LJ2_A 3SDM_A 3LJ0_A 2RIO_A 3LJ1_A 3P23_A.
Probab=24.00 E-value=60 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=28.8
Q ss_pred ccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCC
Q 025836 127 LESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLP 163 (247)
Q Consensus 127 ~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP 163 (247)
..|+-+.-.||+.+||....+|....+..+++|.++|
T Consensus 56 R~Y~~~sv~DLLR~IRNk~~Hy~el~~~~k~~lg~~p 92 (129)
T PF06479_consen 56 RKYDGDSVRDLLRAIRNKKHHYQELPEEVKEILGSLP 92 (129)
T ss_dssp SS--TT-HHHHHHHHHHHHHTCCCS-HHHHHHC-STT
T ss_pred cCCCccCHHHHHHHHHcchHhHHHCCHHHHHHhCCCc
Confidence 4488889999999999999999999888898887777
No 37
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.54 E-value=1.7e+02 Score=20.02 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.0
Q ss_pred HHHHHhcCCCccHHHHHHhCCCCCHHhHHHHH
Q 025836 143 EIFIYMCDRDPAPRQVLLSLPCITPQDLLAFE 174 (247)
Q Consensus 143 ~Iy~~l~p~~~~pr~VL~sLP~I~~~~l~~f~ 174 (247)
.|+..+ ....++.+|+...|+++.+++.+.-
T Consensus 23 ~i~~~~-~~G~s~eeI~~~yp~Lt~~~i~aAl 53 (56)
T PF04255_consen 23 DILDLL-AAGESPEEIAEDYPSLTLEDIRAAL 53 (56)
T ss_dssp HHHHHH-HTT--HHHHHHHSTT--HHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHCCCCCHHHHHHHH
Confidence 455555 5788999999999999999987653
No 38
>PRK14707 hypothetical protein; Provisional
Probab=22.40 E-value=4.9e+02 Score=31.25 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred HHHHhhhhc-cccCcchhhhhh-hhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-cccchHhhHHHHHHHHHHHHHHh
Q 025836 72 LQISLEAFT-WTDGEAVTKVSS-FCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGL-ALESNAVISADLVGLCREIFIYM 148 (247)
Q Consensus 72 L~~~~~~l~-wkDt~~~~~~~s-f~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L-~~~~f~d~q~eL~~L~~~Iy~~l 148 (247)
+.-.+++|+ |.|.+-|.-+.. ....| ..+++++.-+-..-...+|++| ..|-..+|-....+|+..+-.--
T Consensus 291 vanalNalSKwpd~~vc~~Aa~~la~rl------~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~ 364 (2710)
T PRK14707 291 VTQALNALSKWADLPVCAEAAIALAERL------ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADP 364 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHH------hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH
Confidence 445667776 999998887773 33332 2577788877888889999999 67888889998888887654221
Q ss_pred cCCCccHHHHHHhCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc--hHHHhhhcccc
Q 025836 149 CDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN--LKALAAQKSVN 212 (247)
Q Consensus 149 ~p~~~~pr~VL~sLP~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~--l~a~~~~k~~~ 212 (247)
....+++.+.+...-+.|.|=.-.-..|...+.|-..+.+.. .+++..|.=.|
T Consensus 365 -----------~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van 419 (2710)
T PRK14707 365 -----------ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSN 419 (2710)
T ss_pred -----------hhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHH
Confidence 145577789999999999885555667777777766664432 33444444333
No 39
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.17 E-value=2.7e+02 Score=26.80 Aligned_cols=72 Identities=6% Similarity=0.050 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHH--hCCCCCHHhHHHHHHHHhc
Q 025836 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLL--SLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~--sLP~I~~~~l~~f~~~L~~ 179 (247)
.|..++-.++..+++....-..+....+.+.++..++.+.+.. .....+.++. .+.||+.+++.+|.+.+++
T Consensus 280 RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v~~~~~eave~---E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an 353 (410)
T PRK12759 280 RDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVEL---EDRFIELAYELGTIEGLKADEVKQYIRHITD 353 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhcChHHHHHHHHHHHHHHHH---HHHHHHHHcCCCCcCCCCHHHHHHHHHHHHH
Confidence 3555665666666666554333333344667777777777655 3333333443 4889999999999999877
No 40
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=21.07 E-value=1.6e+02 Score=26.14 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHH
Q 025836 114 SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQ 168 (247)
Q Consensus 114 ~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~VL~sLP~I~~~ 168 (247)
..+-+...|+.... +-.=-+-+..+++.|.+.|...-|.-++-|++||||-+.
T Consensus 68 ~~~~l~~~I~~iGl--yr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGVGrK 120 (211)
T COG0177 68 DEEELEELIKSIGL--YRNKAKNIKELARILLEKFGGEVPDTREELLSLPGVGRK 120 (211)
T ss_pred CHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCcchH
Confidence 34455566653322 222345688899999999999999999999999999876
No 41
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=20.57 E-value=95 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHHhcCcccHHHHHHHHhh
Q 025836 58 VGFLLKHKDLALPALQISLE 77 (247)
Q Consensus 58 ~~~iL~~~~i~~plL~~~~~ 77 (247)
|-||| |++-+|.||..
T Consensus 27 RifiF----iLElLL~FC~G 42 (62)
T PF01736_consen 27 RIFIF----ILELLLEFCRG 42 (62)
T ss_pred HHHHH----HHHHHHHHhcC
Confidence 77777 77777777753
No 42
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=20.45 E-value=1.9e+02 Score=28.30 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.5
Q ss_pred cHHHHHHhCCCCCHHhHHHHHHHHhc
Q 025836 154 APRQVLLSLPCITPQDLLAFEDALTK 179 (247)
Q Consensus 154 ~pr~VL~sLP~I~~~~l~~f~~~L~~ 179 (247)
+|..++.+|++|++.|+++.-.++..
T Consensus 384 ~~d~~i~~id~Vt~sdV~~a~kk~~s 409 (429)
T KOG2583|consen 384 EPDAFIQQIDKVTASDVQKAAKKFLS 409 (429)
T ss_pred ChHHHHHHhccccHHHHHHHHHHhcc
Confidence 89999999999999999988887763
No 43
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=20.34 E-value=1.4e+02 Score=18.11 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=14.2
Q ss_pred ccHHHHHHhCCCCCHHhHHHH
Q 025836 153 PAPRQVLLSLPCITPQDLLAF 173 (247)
Q Consensus 153 ~~pr~VL~sLP~I~~~~l~~f 173 (247)
+.-++=|++||||-++.-++.
T Consensus 7 pas~eeL~~lpGIG~~tA~~I 27 (30)
T PF00633_consen 7 PASIEELMKLPGIGPKTANAI 27 (30)
T ss_dssp TSSHHHHHTSTT-SHHHHHHH
T ss_pred CCCHHHHHhCCCcCHHHHHHH
Confidence 344667899999998865543
No 44
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.06 E-value=74 Score=32.29 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q 025836 4 KLLRDLTREICSLLSTMASSG 24 (247)
Q Consensus 4 ~lLRqLTr~vv~ll~~~~~p~ 24 (247)
++|.++|.+=-.|+.+++..-
T Consensus 185 kvL~DVTaeEF~l~m~lL~~l 205 (556)
T PF05918_consen 185 KVLQDVTAEEFELFMSLLKSL 205 (556)
T ss_dssp HHCTT--HHHHHHHHHHHHTS
T ss_pred HHHHhccHHHHHHHHHHHHhC
Confidence 456777777777777777754
No 45
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.02 E-value=78 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=20.4
Q ss_pred HHHHhCCCCCHHhHHHHHHHHhcCCC
Q 025836 157 QVLLSLPCITPQDLLAFEDALTKTAS 182 (247)
Q Consensus 157 ~VL~sLP~I~~~~l~~f~~~L~~~~s 182 (247)
++|.++|||.+.-...+...+.+...
T Consensus 2 ~~l~sipGig~~~a~~llaeigd~~r 27 (87)
T PF02371_consen 2 ELLTSIPGIGPITAATLLAEIGDISR 27 (87)
T ss_pred chhcCCCCccHHHHHHHHHHHcCchh
Confidence 57899999999888888887766543
No 46
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=20.01 E-value=1e+02 Score=21.52 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhcCC--CccHHHHHHhCCC
Q 025836 133 ISADLVGLCREIFIYMCDR--DPAPRQVLLSLPC 164 (247)
Q Consensus 133 ~q~eL~~L~~~Iy~~l~p~--~~~pr~VL~sLP~ 164 (247)
+-.||+.+++.|+.++... .+..++-+.++||
T Consensus 2 sv~dLLr~irNi~~hp~e~k~n~~~~~~l~~~pg 35 (58)
T smart00580 2 SVRDLLRALRNILHHPREEKGNPAIKERLGDVPG 35 (58)
T ss_pred cHHHHHHHHHHHhhCcchhhcCHHHHHHhcCCCc
Confidence 3468999999999999888 7788888888884
Done!