BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025837
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 20/231 (8%)
Query: 24 SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVS-----RLWNNGAGCGTC 76
+ ++++T+YG P G G GACG+ ++V+ +G++ ++ +G GCG+C
Sbjct: 18 KWLDAKSTWYGKPTGAGPKDNGGACGY----KDVDKPPFSGMTGCGNTPIFKSGRGCGSC 73
Query: 77 YQVRCTVPEICTDEGVSVVVTDYGEGDDT--DFILSPRAYGRMAVADKSEELYSHGVVDV 134
++++CT PE C+ E V V +TD E F LS A+G MA ++L S G +++
Sbjct: 74 FEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELEL 133
Query: 135 EFERVPCRF-RGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRR 193
+F RV C++ G V F V + S P YLA+ + YV+G DV+AV+I +K W+ ++
Sbjct: 134 QFRRVKCKYPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKE 192
Query: 194 AFGAVFDISNPSP--GEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGS 242
++GA++ I P G +R+ G T A + IP WKA +Y S
Sbjct: 193 SWGAIWRIDTPDKLTGPFTVRYTTEGG---TKTEAEDVIPEGWKADTSYES 240
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 20/235 (8%)
Query: 24 SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVSR-----LWNNGAGCGTC 76
+ +RAT+YG P+G G P GACG +NVN +G++ ++ +G GCG+C
Sbjct: 18 KWLTARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSC 73
Query: 77 YQVRCTVPEICTDEGVSVVVTD--YGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDV 134
Y+VRC C+ V+V +TD Y F LS +A+G +A ++++ G++DV
Sbjct: 74 YEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDV 133
Query: 135 EFERVPCRF-RGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRR 193
EF RV C++ G ++F + + P YLAV + YV+ D++ +EI K +W PM+
Sbjct: 134 EFRRVRCKYPAGQKIVFHIEKGCN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKL 192
Query: 194 AFGAVF--DISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQL 246
++GA++ D + G ++R S V+A + IP W+ Y S +Q
Sbjct: 193 SWGAIWRMDTAKALKGPFSIRLT---SESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From
Timothy Grass Pollen
Length = 108
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 147 NVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSP 206
V F V + S P+ L + + Y + + VE+ Q +W P+ + G V+++ + P
Sbjct: 14 QVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKP 71
Query: 207 --GEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAY 240
G N RF S G V + IP A+ G Y
Sbjct: 72 LVGPFNFRFM---SKGGMRNVFDEVIPTAFSIGKTY 104
>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|B Chain B, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|C Chain C, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|D Chain D, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT9|A Chain A, X-Ray Crystal Structure Of Pollen Allergen - Phl P 3
Length = 100
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 147 NVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSP 206
V F V + S P+ L + + Y + + VE+ Q +W P+ + G V+++ + P
Sbjct: 3 QVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKP 60
Query: 207 --GEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQ 245
G N RF S G V + IP A+ G Y Q
Sbjct: 61 LVGPFNFRFM---SKGGMRNVFDEVIPTAFSIGKTYKPEEQ 98
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 147 NVMFKVHENSRYPQYLAVSMLYVSGQNDVLA-VEIWQKDCRDWVPMRRAFGAV--FDISN 203
V F V + S ++LAV + Y + D +A VE+ + +WV M + G V FD
Sbjct: 3 KVTFTVEKGSN-EKHLAVLVKY---EGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEE 58
Query: 204 PSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAY 240
P G N RF V ++ +P + G Y
Sbjct: 59 PLQGPFNFRFLTEKGMK---NVFDDVVPEKYTIGATY 92
>pdb|3C0B|A Chain A, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|B Chain B, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|C Chain C, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|D Chain D, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3CET|A Chain A, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
pdb|3CET|B Chain B, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
Length = 334
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 73 CGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKS--EELYSHG 130
CGT V + E C ++ D G TD I P G++ VA+K+ E L +H
Sbjct: 115 CGTAKWVSKNIEENC-------ILVDXG-STTTDII--PIVEGKV-VAEKTDLERLXNHE 163
Query: 131 VVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165
++ V R P G + FK + + +Y A++
Sbjct: 164 LLYVGTLRTPISHLGNTISFKGVDTNVSSEYFAIT 198
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 173 NDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPS 205
NDV+ V ++ KD D+ M + F S P+
Sbjct: 70 NDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPA 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,395,990
Number of Sequences: 62578
Number of extensions: 374691
Number of successful extensions: 667
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 11
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)