Query 025837
Match_columns 247
No_of_seqs 147 out of 990
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 5.1E-75 1.1E-79 508.5 27.6 241 6-247 7-247 (247)
2 PLN00193 expansin-A; Provision 100.0 2.3E-67 4.9E-72 462.4 25.7 214 19-246 24-256 (256)
3 PLN00050 expansin A; Provision 100.0 4.4E-66 9.6E-71 452.5 25.0 210 22-246 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 3.6E-28 7.9E-33 200.0 19.1 203 14-247 19-231 (232)
5 PLN03024 Putative EG45-like do 100.0 5.1E-29 1.1E-33 198.3 13.1 96 27-138 23-125 (125)
6 PLN00115 pollen allergen group 99.9 2.2E-25 4.7E-30 175.4 11.2 92 146-246 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 7.3E-24 1.6E-28 157.5 9.9 80 148-231 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 5.4E-23 1.2E-27 154.3 6.3 70 60-136 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 2E-19 4.4E-24 132.1 6.6 70 60-136 1-78 (78)
10 PF00967 Barwin: Barwin family 98.9 6E-10 1.3E-14 86.4 3.8 64 69-141 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 5.7E-06 1.2E-10 65.4 8.4 72 55-140 40-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00016 3.5E-09 62.2 10.5 95 28-144 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.1 0.0016 3.4E-08 57.1 7.2 59 73-142 119-178 (233)
14 PRK10672 rare lipoprotein A; P 96.9 0.0092 2E-07 55.5 10.8 57 72-139 114-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 92.7 0.099 2.2E-06 44.9 3.0 53 60-113 70-124 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 89.2 0.65 1.4E-05 37.3 4.4 50 171-220 38-104 (131)
17 cd02110 SO_family_Moco_dimer S 84.7 2 4.4E-05 39.5 5.5 50 171-220 234-291 (317)
18 cd02114 bact_SorA_Moco sulfite 73.2 9.3 0.0002 36.0 6.2 50 171-220 286-343 (367)
19 cd02113 bact_SoxC_Moco bacteri 71.6 9 0.0002 35.5 5.6 51 170-220 235-292 (326)
20 PLN00177 sulfite oxidase; Prov 71.4 7.5 0.00016 36.9 5.1 51 170-220 293-360 (393)
21 cd02111 eukary_SO_Moco molybdo 58.8 22 0.00048 33.4 5.6 51 170-220 273-337 (365)
22 cd02112 eukary_NR_Moco molybdo 52.3 34 0.00073 32.5 5.7 48 173-220 300-362 (386)
23 PF12863 DUF3821: Domain of un 50.5 1.5E+02 0.0033 25.7 9.0 93 103-220 46-141 (209)
24 PF04149 DUF397: Domain of unk 44.1 66 0.0014 21.8 4.7 37 74-118 15-51 (56)
25 COG2372 CopC Uncharacterized p 40.1 43 0.00093 26.9 3.7 28 126-154 96-126 (127)
26 PLN02252 nitrate reductase [NA 38.8 79 0.0017 33.4 6.4 53 168-220 367-434 (888)
27 PRK13159 cytochrome c-type bio 37.4 47 0.001 27.6 3.7 31 209-239 72-102 (155)
28 PF10417 1-cysPrx_C: C-termina 30.9 28 0.00061 22.0 1.1 12 228-239 10-21 (40)
29 PRK10301 hypothetical protein; 29.9 79 0.0017 25.0 3.8 26 127-153 96-124 (124)
30 PF04620 FlaA: Flagellar filam 28.9 1.6E+02 0.0035 25.7 5.8 44 146-192 108-151 (217)
31 PF07172 GRP: Glycine rich pro 27.3 37 0.0008 25.7 1.4 11 7-17 11-21 (95)
32 PF03100 CcmE: CcmE; InterPro 25.4 1.1E+02 0.0024 24.2 3.9 30 210-239 72-101 (131)
33 PHA02732 hypothetical protein; 24.9 8.4E+02 0.018 25.9 10.6 102 128-231 160-275 (1467)
34 PF04234 CopC: CopC domain; I 24.2 92 0.002 23.1 3.1 26 127-153 69-97 (97)
35 PRK13150 cytochrome c-type bio 24.2 1E+02 0.0023 25.6 3.6 31 209-239 78-108 (159)
36 PRK13165 cytochrome c-type bio 23.2 1.3E+02 0.0028 25.1 4.0 31 209-239 78-108 (160)
37 cd02854 Glycogen_branching_enz 21.5 1.9E+02 0.0041 21.7 4.4 47 175-224 16-75 (99)
38 PF08481 GBS_Bsp-like: GBS Bsp 21.0 3.6E+02 0.0078 20.1 9.6 65 159-224 10-86 (95)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=5.1e-75 Score=508.49 Aligned_cols=241 Identities=68% Similarity=1.261 Sum_probs=224.0
Q ss_pred HHHHHHHHhhhhccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEECCCC
Q 025837 6 YYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPE 85 (247)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s~l~~~g~~CG~C~~V~c~~~~ 85 (247)
+++|+++|++|.+.+++ +|++++|||||++++.|+++|||||+++..+.+++.+||+|+||++|++||+||||+|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~ 85 (247)
T PLN03023 7 CCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKAPN 85 (247)
T ss_pred HHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCCCC
Confidence 45555666666655555 59999999999999999999999999998888999999999999999999999999999999
Q ss_pred cccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCCcEEEEE
Q 025837 86 ICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165 (247)
Q Consensus 86 ~C~~~~v~V~VtD~Cp~~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~~w~~~~ 165 (247)
+|++++|+|+|||.||+++.|||||.+||.+||+|++++++++.|+|+|+||||||.++|++|+|+|+++|.+|+||+++
T Consensus 86 ~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 86 LCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred ccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999559999999
Q ss_pred EEEccCCcceEEEEEEecCCCCeEEccccCCceeccCCCCCCceeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCCC
Q 025837 166 MLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQ 245 (247)
Q Consensus 166 v~n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~y~t~~Q 245 (247)
|.|++|.++|++||||++++..|++|+|+||++|+.+.+++|||+|||++|.++|+++|+++||||++|++|+||++.+|
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq 245 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQ 245 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccc
Confidence 99999999999999998778899999999999999999999999999999988884558999999999999999999999
Q ss_pred CC
Q 025837 246 LE 247 (247)
Q Consensus 246 f~ 247 (247)
|.
T Consensus 246 ~~ 247 (247)
T PLN03023 246 LD 247 (247)
T ss_pred cC
Confidence 95
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.3e-67 Score=462.41 Aligned_cols=214 Identities=29% Similarity=0.600 Sum_probs=195.4
Q ss_pred cccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEEC---CCCcccCC-cEE
Q 025837 19 CYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCT---VPEICTDE-GVS 93 (247)
Q Consensus 19 ~~~~~~~~~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s-~l~~~g~~CG~C~~V~c~---~~~~C~~~-~v~ 93 (247)
....++|++|+|||||++|+.++++|||||+++..++++.++||+| +||++|+.||+||||+|. ++++|.++ +|+
T Consensus 24 ~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~ 103 (256)
T PLN00193 24 AFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVT 103 (256)
T ss_pred CcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEE
Confidence 3445689999999999999999999999999998888999999999 999999999999999994 56789765 899
Q ss_pred EEEeeCCCC--------------CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCC
Q 025837 94 VVVTDYGEG--------------DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYP 159 (247)
Q Consensus 94 V~VtD~Cp~--------------~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~ 159 (247)
|+|||+||. ++.|||||++||.+|| .++.|+++|+||||+|+++| ||+|+|++ ++
T Consensus 104 Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA-------~~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~ 172 (256)
T PLN00193 104 ITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIG-------IYRGGIVPVLFQRVPCKKHG-GVRFTING---RD 172 (256)
T ss_pred EEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHh-------hhcCCeEeEEEEEeccccCC-CcEEEEcC---Cc
Confidence 999999996 3479999999999999 46799999999999999999 99999985 57
Q ss_pred cEEEEEEEEccCCcceEEEEEEecCCCCeEEccccCCceeccCCCCCCceeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025837 160 QYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239 (247)
Q Consensus 160 ~w~~~~v~n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~ 239 (247)
||++++|.|++|.++|++|+||+. +..|++|+|+||++|+.+.++.++ +|+||||+.+| +++++.||||++|++|+|
T Consensus 173 y~~~vlv~nv~G~gdV~~v~Ik~~-~~~W~~M~R~wGa~W~~~~~l~g~-plsfRvts~~G-~~~~~~~viPa~W~~G~t 249 (256)
T PLN00193 173 YFELVLISNVGGAGSIQSVSIKGS-KTGWMAMSRNWGANWQSNAYLDGQ-SLSFKVTTTDG-QTRFFLNVVPANWGFGQT 249 (256)
T ss_pred cEEEEEEEEeCCCccEEEEEEecC-CCCeeECcccccceeEecCCCCCC-CEEEEEEEcCC-eEEEECceeCCCCCCCCe
Confidence 999999999999999999999965 458999999999999998877776 68888888888 999999999999999999
Q ss_pred EecCCCC
Q 025837 240 YGSAIQL 246 (247)
Q Consensus 240 y~t~~Qf 246 (247)
|++.+||
T Consensus 250 y~s~vqf 256 (256)
T PLN00193 250 FSSSVQF 256 (256)
T ss_pred EecCccC
Confidence 9999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=4.4e-66 Score=452.55 Aligned_cols=210 Identities=32% Similarity=0.630 Sum_probs=192.7
Q ss_pred CCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEECC-CCcccCCcEEEEEeeC
Q 025837 22 QYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTV-PEICTDEGVSVVVTDY 99 (247)
Q Consensus 22 ~~~~~~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s-~l~~~g~~CG~C~~V~c~~-~~~C~~~~v~V~VtD~ 99 (247)
..+|.+++|||||++|+.|+++|||||+++..++++.++||+| +||++|+.||+||||+|.+ +.+|.+++|+|+|||+
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~ 101 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF 101 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence 4579999999999999999999999999998889999999999 9999999999999999965 4579999999999999
Q ss_pred CCC--------------CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCCcEEEEE
Q 025837 100 GEG--------------DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165 (247)
Q Consensus 100 Cp~--------------~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~~w~~~~ 165 (247)
||+ ++.|||||++||.+|| .++.|+++|+||||||+++| ||+|+|++++ ||+.++
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA-------~~~aGii~V~yRRVpC~~~G-~i~f~v~g~s---y~~~vl 170 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA-------QYKAGIVPVQYRRVACRKSG-GIRFTINGHS---YFNLVL 170 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHh-------hhcCCeeeeEEEEecCcCCC-CeEEEEcCCc---eeEEEE
Confidence 996 3579999999999999 46799999999999999999 9999998754 999999
Q ss_pred EEEccCCcceEEEEEEecCCCCeEEccccCCceeccCCCCCCceeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCCC
Q 025837 166 MLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQ 245 (247)
Q Consensus 166 v~n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~y~t~~Q 245 (247)
|.|++|.++|++|+|+++ +..|++|+|+||++|+.+.++.++ +|+||||+.+| +++++.||||++|++|+||++ .|
T Consensus 171 v~nv~G~gdi~~V~ikg~-~~~W~~M~R~wGa~W~~~~~l~g~-~lsfRvt~~~G-~~~~~~~V~Pa~W~~G~ty~~-~~ 246 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGS-KSNWQAMSRNWGQNWQSNSYLNGQ-ALSFKVTTSDG-RTVISNNAAPSNWAFGQTYTG-MQ 246 (247)
T ss_pred EEEcCCCccEEEEEEecC-CCCeeECccccCceeEccCCCCCC-cEEEEEEecCC-cEEEECceeCCCCCCCCeEec-Cc
Confidence 999999999999999964 358999999999999988777776 67788888888 899999999999999999999 49
Q ss_pred C
Q 025837 246 L 246 (247)
Q Consensus 246 f 246 (247)
|
T Consensus 247 f 247 (247)
T PLN00050 247 F 247 (247)
T ss_pred C
Confidence 8
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.6e-28 Score=199.96 Aligned_cols=203 Identities=22% Similarity=0.311 Sum_probs=163.5
Q ss_pred hhhhccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCC----CCCCceEEEEECCCCccc
Q 025837 14 LLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNG----AGCGTCYQVRCTVPEICT 88 (247)
Q Consensus 14 ~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s-~l~~~g----~~CG~C~~V~c~~~~~C~ 88 (247)
+.+-..++-++-++|.|||-|.. ..+||--. ++.+..+.+.|+| +.-|-| +.-|+.++|. +|
T Consensus 19 ~s~q~s~awd~~f~G~ATyTgsG----YsGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP---- 85 (232)
T COG4305 19 FSPQASAAWDDLFEGYATYTGSG----YSGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP---- 85 (232)
T ss_pred cCCCcccccccccceeEEEeccc----ccCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----
Confidence 33334455567789999997765 36788754 4445578899999 777654 6789999998 65
Q ss_pred CCcEEEEEeeCCCCCC-CCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCCcEEEEEEE
Q 025837 89 DEGVSVVVTDYGEGDD-TDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSML 167 (247)
Q Consensus 89 ~~~v~V~VtD~Cp~~~-~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~~w~~~~v~ 167 (247)
++..+|.|||+-|+.. +.+||||.||.+|. ++..|+++|+||.|+-+..| |+.++|||+| +.||.++|++
T Consensus 86 KG~TTVYVTDlYPegasGaLDLSpNAFakIG-------nm~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVR 156 (232)
T COG4305 86 KGKTTVYVTDLYPEGASGALDLSPNAFAKIG-------NMKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVR 156 (232)
T ss_pred CCceEEEEecccccccccccccChHHHhhhc-------chhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeee
Confidence 6789999999999865 79999999999999 57899999999999999999 9999999999 8999999999
Q ss_pred EccCCcceEEEEEEecCCCCeEEccccCCceeccCCCCCCceeEEEEEEecCCCEEEEEecccCCCCC--CCcEEe--cC
Q 025837 168 YVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWK--AGVAYG--SA 243 (247)
Q Consensus 168 n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~--~g~~y~--t~ 243 (247)
|| .-||.++|+.+ ++.|..|.+.+||+|...+...+| |.+|.|++.| +.++ |.+|+--+ ..+.|. ++
T Consensus 157 nH--~yPV~KlE~~q--dg~WinlpK~dYNhFVgT~LG~~p--L~~RmTDIRG-~~l~--DtlP~Lpk~asSKaY~V~G~ 227 (232)
T COG4305 157 NH--KYPVMKLEYEQ--DGKWINLPKMDYNHFVGTNLGTGP--LKVRMTDIRG-KVLK--DTLPKLPKSASSKAYTVPGH 227 (232)
T ss_pred cc--cCceEEEEEec--CCeEeeccccccceeeccccCCCc--eEEEEeeccc-ceee--cccccccccccCCceeecce
Confidence 99 99999999975 578999999999999877655666 7778889999 6554 33554332 234454 77
Q ss_pred CCCC
Q 025837 244 IQLE 247 (247)
Q Consensus 244 ~Qf~ 247 (247)
+||+
T Consensus 228 VQFs 231 (232)
T COG4305 228 VQFS 231 (232)
T ss_pred eecC
Confidence 8885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=5.1e-29 Score=198.30 Aligned_cols=96 Identities=31% Similarity=0.607 Sum_probs=84.4
Q ss_pred eEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEECCC-----CcccCCcEEEEEeeCC
Q 025837 27 NSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTVP-----EICTDEGVSVVVTDYG 100 (247)
Q Consensus 27 ~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s-~l~~~g~~CG~C~~V~c~~~-----~~C~~~~v~V~VtD~C 100 (247)
+|+||||++. ..||| |++ ++++.++||+| ++|++|+.||+||||+|.++ .+|++++|+|+|+|+|
T Consensus 23 ~G~AT~Y~~~-----~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 23 PGIATFYTSY-----TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred ceEEEEeCCC-----CCccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 5999999875 36899 443 35688999999 99999999999999999765 3799999999999999
Q ss_pred C-CCCCCeeeCHHHHhhccccccccccccCcEEEEEEEE
Q 025837 101 E-GDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFER 138 (247)
Q Consensus 101 p-~~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~ 138 (247)
| .|+.|||||++||.+||+ .+.|+++|+|.+
T Consensus 94 P~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSGCASTLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 9 588999999999999995 468999999974
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.93 E-value=2.2e-25 Score=175.40 Aligned_cols=92 Identities=30% Similarity=0.550 Sum_probs=80.7
Q ss_pred cceEEEEeeCCCCCcEEEEEEEEccCCcceEEEEEEecCCCCeE-EccccCCceeccC--CCCCCceeEEEEEEecCCCE
Q 025837 146 YNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWV-PMRRAFGAVFDIS--NPSPGEINLRFQVSGSAGFT 222 (247)
Q Consensus 146 ~~i~~~v~~gs~~~~w~~~~v~n~gG~~~I~sVev~~~~~~~W~-~m~r~~g~~W~~~--~~~~gp~~lr~rvt~~~G~~ 222 (247)
++|+|+|+++| |++||++++ | ++|.+||||+.++..|+ +|+|+||++|+.+ .+++|||++||+. .+| +
T Consensus 24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~--~~G-~ 94 (118)
T PLN00115 24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV--KGG-G 94 (118)
T ss_pred CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE--eCC-C
Confidence 59999999999 899998765 4 47999999998888999 9999999999953 4789986665554 567 7
Q ss_pred EEEEecccCCCCCCCcEEecCCCC
Q 025837 223 WVVANNAIPRAWKAGVAYGSAIQL 246 (247)
Q Consensus 223 ~vv~~~vip~~w~~g~~y~t~~Qf 246 (247)
+++++||||++|++|++|++++||
T Consensus 95 ~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 95 YRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEEECceECCCCCCCCEEeccccC
Confidence 899999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=7.3e-24 Score=157.49 Aligned_cols=80 Identities=46% Similarity=0.792 Sum_probs=65.5
Q ss_pred eEEEEeeCCCCCcEEEEEEEEccCCcceEEEEEEecCCCCeEEccccCCceeccC-CCCCCceeEEEEEEecC-CCEEEE
Q 025837 148 VMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDIS-NPSPGEINLRFQVSGSA-GFTWVV 225 (247)
Q Consensus 148 i~~~v~~gs~~~~w~~~~v~n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~-~~~~gp~~lr~rvt~~~-G~~~vv 225 (247)
|+|+|+++| ++|||+++|.|+||.++|++|||++.++..|++|+|+||++|+.+ +++.+| |+||+|+.+ | ++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~p--ls~Rvts~~~G-~~vv 76 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGP--LSFRVTSGDSG-QTVV 76 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SS--EEEEEEETTTS-EEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCC--EEEEEEEcCCC-eEEE
Confidence 689999999 999999999999999999999999988889999999999999986 777777 555667777 7 9999
Q ss_pred EecccC
Q 025837 226 ANNAIP 231 (247)
Q Consensus 226 ~~~vip 231 (247)
++||||
T Consensus 77 ~~nViP 82 (82)
T PF01357_consen 77 ADNVIP 82 (82)
T ss_dssp EEEEE-
T ss_pred EecccC
Confidence 999998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.88 E-value=5.4e-23 Score=154.31 Aligned_cols=70 Identities=36% Similarity=0.793 Sum_probs=62.7
Q ss_pred EEEec-cccCCCCCCCceEEEEEC-CCCcccCC-cEEEEEeeCCCCC--------------CCCeeeCHHHHhhcccccc
Q 025837 60 VAGVS-RLWNNGAGCGTCYQVRCT-VPEICTDE-GVSVVVTDYGEGD--------------DTDFILSPRAYGRMAVADK 122 (247)
Q Consensus 60 ~aA~s-~l~~~g~~CG~C~~V~c~-~~~~C~~~-~v~V~VtD~Cp~~--------------~~~~DLs~~aF~~la~~~~ 122 (247)
+||+| +||++|++||+||||+|. ++.+|.++ +|+|+|||+||++ +.|||||++||.+||+
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 48999 999999999999999996 56689874 8999999999962 5799999999999994
Q ss_pred ccccccCcEEEEEE
Q 025837 123 SEELYSHGVVDVEF 136 (247)
Q Consensus 123 ~~~~~~~G~v~i~~ 136 (247)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 5799999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.79 E-value=2e-19 Score=132.06 Aligned_cols=70 Identities=37% Similarity=0.653 Sum_probs=58.5
Q ss_pred EEEec-cccCCCCCCCceEEEEECC--CCc--ccC--CcEEEEEeeCCCCCC-CCeeeCHHHHhhccccccccccccCcE
Q 025837 60 VAGVS-RLWNNGAGCGTCYQVRCTV--PEI--CTD--EGVSVVVTDYGEGDD-TDFILSPRAYGRMAVADKSEELYSHGV 131 (247)
Q Consensus 60 ~aA~s-~l~~~g~~CG~C~~V~c~~--~~~--C~~--~~v~V~VtD~Cp~~~-~~~DLs~~aF~~la~~~~~~~~~~~G~ 131 (247)
+||++ .+|++|.+||+||+++|.. +.. |.. ++|+|+|+|+||+|. .|||||+.||++|+. ++.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCceE
Confidence 58999 9999999999999999932 322 777 899999999999976 799999999999994 57999
Q ss_pred EEEEE
Q 025837 132 VDVEF 136 (247)
Q Consensus 132 v~i~~ 136 (247)
++|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.95 E-value=6e-10 Score=86.39 Aligned_cols=64 Identities=27% Similarity=0.534 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEee
Q 025837 69 NGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPC 141 (247)
Q Consensus 69 ~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C 141 (247)
.-..||+|++|+-+. ++.+++|+|+|+|+.+ +|||.+..|.+|-..+. ....|.+.|.|++|+|
T Consensus 56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~---G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQ---GYAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSH---HHHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCc---ccccceEEEEEEEEcC
Confidence 336799999999543 3678999999999966 99999999999975443 3568999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.25 E-value=5.7e-06 Score=65.45 Aligned_cols=72 Identities=24% Similarity=0.457 Sum_probs=50.0
Q ss_pred CCCceEEEec--cccCCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEE
Q 025837 55 VNDANVAGVS--RLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVV 132 (247)
Q Consensus 55 ~~~~~~aA~s--~l~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~aF~~la~~~~~~~~~~~G~v 132 (247)
|....|.+.. +-|+ ...||.|+|++-. +++|.|...|.=+ ..|+|+.+||+.|.+. + ....|+|
T Consensus 40 p~Fp~IGg~~~V~gWn-S~~CGtC~~lty~------g~si~vlaID~a~---~gfnis~~A~n~LT~g-~---a~~lG~V 105 (119)
T PF07249_consen 40 PNFPYIGGAPAVAGWN-SPNCGTCWKLTYN------GRSIYVLAIDHAG---GGFNISLDAMNDLTNG-Q---AVELGRV 105 (119)
T ss_dssp TTTTSEEEETT--STT--TTTT-EEEEEET------TEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-----CCCC-EE
T ss_pred CCCCeeccccccccCC-CCCCCCeEEEEEC------CeEEEEEEEecCC---CcccchHHHHHHhcCC-c---ccceeEE
Confidence 3344677777 6685 4789999999962 5799999999843 4699999999999863 2 2357999
Q ss_pred EEEEEEEe
Q 025837 133 DVEFERVP 140 (247)
Q Consensus 133 ~i~~r~V~ 140 (247)
+++|++|+
T Consensus 106 ~a~~~qV~ 113 (119)
T PF07249_consen 106 DATYTQVD 113 (119)
T ss_dssp E-EEEEE-
T ss_pred EEEEEEcC
Confidence 99999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.86 E-value=0.00016 Score=62.16 Aligned_cols=95 Identities=26% Similarity=0.190 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCC-CC
Q 025837 28 SRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDD-TD 106 (247)
Q Consensus 28 g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s~l~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~-~~ 106 (247)
|.|+|||..-. | ...|.|-.- ++ ..++||-..| ..|...+|+... ++++|+|+|.|++|--. .-
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y-~~---~~~tAAHktL-----PlgT~V~VtNl~----ngrsviVrVnDRGPf~~gRi 65 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY-NM---KALTAAHKTL-----PFNTYVKVTNLH----NNRSVIVRINDRGPFSDDRI 65 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec-CC---CccccccccC-----CCCCEEEEEECC----CCCEEEEEEeCCCCCCCCCE
Confidence 67999986411 1 123443211 10 2234443333 678999999654 36899999999999754 68
Q ss_pred eeeCHHHHhhccccccccccccCcEEEEEEEEEeeccC
Q 025837 107 FILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFR 144 (247)
Q Consensus 107 ~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~ 144 (247)
+|||+.|+.+|. ....|+.+|+.+.+.....
T Consensus 66 IDLS~aAA~~Lg-------~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 66 IDLSHAAAREIG-------LISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred EECCHHHHHHcC-------CCcCceEEEEEEEEecCCC
Confidence 999999999999 5689999999999987754
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.0016 Score=57.08 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCceEEEEECCCCcccCCcEEEEEeeCCCCCC-CCeeeCHHHHhhccccccccccccCcEEEEEEEEEeec
Q 025837 73 CGTCYQVRCTVPEICTDEGVSVVVTDYGEGDD-TDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCR 142 (247)
Q Consensus 73 CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~-~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~ 142 (247)
=|.-.+|+-.+ ++++|+|+|.|++|--. ..+|||..|+.+|+ ..+.|+.+|+.+++.+.
T Consensus 119 ~~t~v~VtNl~----NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~-------~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLD----NGRSVVVRINDRGPFVSGRIIDLSKAAADKLG-------MIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEcc----CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC-------CccCceEEEEEEEeccc
Confidence 35667888655 36899999999999754 68999999999999 56799999999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=96.93 E-value=0.0092 Score=55.53 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=45.7
Q ss_pred CCCceEEEEECCCCcccCCcEEEEEeeCCCCCC-CCeeeCHHHHhhccccccccccccCcEEEEEEEEE
Q 025837 72 GCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDD-TDFILSPRAYGRMAVADKSEELYSHGVVDVEFERV 139 (247)
Q Consensus 72 ~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~-~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V 139 (247)
-.|...+|+... ++++|+|+|.|++|--. .-+|||..|+.+|. ....+.|.|+.-.|
T Consensus 114 Plps~vrVtNl~----ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg-------~~~~~~V~ve~i~v 171 (361)
T PRK10672 114 PIPSYVRVTNLA----NGRMIVVRINDRGPYGPGRVIDLSRAAADRLN-------TSNNTKVRIDPIIV 171 (361)
T ss_pred CCCCEEEEEECC----CCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhC-------CCCCceEEEEEEee
Confidence 457888999765 37899999999999754 58999999999999 34456777777666
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=92.74 E-value=0.099 Score=44.92 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=32.2
Q ss_pred EEEec-cccCCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCC-CCCCeeeCHHH
Q 025837 60 VAGVS-RLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEG-DDTDFILSPRA 113 (247)
Q Consensus 60 ~aA~s-~l~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~~DLs~~a 113 (247)
+||.+ .=......|++|||++=++.+ -++|+.+|+||+.--. ...||||..+-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-l~GKkmiVQ~tNtG~dlg~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-LKGKKMIVQVTNTGGDLGSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-TTT-EEEEEEEEE-TTTTTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-cCCCEeEEEecccCCCCCCCeEEEEeCC
Confidence 45555 322334779999999987521 2467899999998654 45799987543
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=89.18 E-value=0.65 Score=37.28 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=33.7
Q ss_pred CCc-ceEEEEEEecCCCCeEEccccCCc-------------eeccC--CC-CCCceeEEEEEEecCC
Q 025837 171 GQN-DVLAVEIWQKDCRDWVPMRRAFGA-------------VFDIS--NP-SPGEINLRFQVSGSAG 220 (247)
Q Consensus 171 G~~-~I~sVev~~~~~~~W~~m~r~~g~-------------~W~~~--~~-~~gp~~lr~rvt~~~G 220 (247)
|.+ +|.+|||+.+++.+|++.+...-. .|+.. -+ +.|...|.+|-++.+|
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G 104 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESG 104 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccc
Confidence 345 899999999999999976642211 35542 22 2578888888888887
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=84.66 E-value=2 Score=39.47 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=36.5
Q ss_pred CCcceEEEEEEecCCCCeEEccccCCc-------eeccC-CCCCCceeEEEEEEecCC
Q 025837 171 GQNDVLAVEIWQKDCRDWVPMRRAFGA-------VFDIS-NPSPGEINLRFQVSGSAG 220 (247)
Q Consensus 171 G~~~I~sVev~~~~~~~W~~m~r~~g~-------~W~~~-~~~~gp~~lr~rvt~~~G 220 (247)
|...|++|||+.+++.+|++..-.... .|+.. .+.+|...|.+|.++.+|
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g 291 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTG 291 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCC
Confidence 446799999999988899976543211 45543 234688899999998888
No 18
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=73.24 E-value=9.3 Score=35.95 Aligned_cols=50 Identities=14% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCcceEEEEEEecCCCCeEEcc--ccCCc----eeccC--CCCCCceeEEEEEEecCC
Q 025837 171 GQNDVLAVEIWQKDCRDWVPMR--RAFGA----VFDIS--NPSPGEINLRFQVSGSAG 220 (247)
Q Consensus 171 G~~~I~sVev~~~~~~~W~~m~--r~~g~----~W~~~--~~~~gp~~lr~rvt~~~G 220 (247)
|...|++|||+.+++.+|+..+ +..+. .|+.. -+..|...|..|-++..|
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G 343 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDG 343 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCC
Confidence 4568999999999899999754 22222 35543 223688899999998888
No 19
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=71.63 E-value=9 Score=35.49 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.5
Q ss_pred cCCcceEEEEEEecCCCCeEEcccc--CC-c---eeccC-CCCCCceeEEEEEEecCC
Q 025837 170 SGQNDVLAVEIWQKDCRDWVPMRRA--FG-A---VFDIS-NPSPGEINLRFQVSGSAG 220 (247)
Q Consensus 170 gG~~~I~sVev~~~~~~~W~~m~r~--~g-~---~W~~~-~~~~gp~~lr~rvt~~~G 220 (247)
+|.++|..|||+.+++.+|+..+.. .+ . .|+.. .+..++..|..|-++..|
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G 292 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETG 292 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCC
Confidence 3566799999999988899976532 11 1 23222 233467788888888887
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=71.35 E-value=7.5 Score=36.94 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=34.9
Q ss_pred cCCcceEEEEEEecCCCCeEEcccc---------------CC--ceeccCCCCCCceeEEEEEEecCC
Q 025837 170 SGQNDVLAVEIWQKDCRDWVPMRRA---------------FG--AVFDISNPSPGEINLRFQVSGSAG 220 (247)
Q Consensus 170 gG~~~I~sVev~~~~~~~W~~m~r~---------------~g--~~W~~~~~~~gp~~lr~rvt~~~G 220 (247)
||..+|+.|||+.+++.+|+..... .+ ..|+..-..+|...|..|-|+..|
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G 360 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAA 360 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCC
Confidence 4445799999999999999966431 11 133333235577888888888887
No 21
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=58.79 E-value=22 Score=33.43 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=34.6
Q ss_pred cCCcceEEEEEEecCCCCeEEcccc--CC-------c---eeccC-CCCC-CceeEEEEEEecCC
Q 025837 170 SGQNDVLAVEIWQKDCRDWVPMRRA--FG-------A---VFDIS-NPSP-GEINLRFQVSGSAG 220 (247)
Q Consensus 170 gG~~~I~sVev~~~~~~~W~~m~r~--~g-------~---~W~~~-~~~~-gp~~lr~rvt~~~G 220 (247)
||...|++|||+.+++.+|+...-. .+ - .|... .+.+ |...|..|-|+..|
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G 337 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAY 337 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCC
Confidence 4556899999999988999976532 11 1 34433 1223 57788888888887
No 22
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=52.30 E-value=34 Score=32.49 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=33.6
Q ss_pred cceEEEEEEecCCCCeEEcccc--C-----C-----ceeccCC---CCCCceeEEEEEEecCC
Q 025837 173 NDVLAVEIWQKDCRDWVPMRRA--F-----G-----AVFDISN---PSPGEINLRFQVSGSAG 220 (247)
Q Consensus 173 ~~I~sVev~~~~~~~W~~m~r~--~-----g-----~~W~~~~---~~~gp~~lr~rvt~~~G 220 (247)
.+|++|||+.+++.+|+..... . + -.|+..- ..+|...|..|-|+..|
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G 362 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESM 362 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCC
Confidence 4799999999989999976432 1 1 1344332 12478889899888887
No 23
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=50.50 E-value=1.5e+02 Score=25.74 Aligned_cols=93 Identities=24% Similarity=0.389 Sum_probs=50.3
Q ss_pred CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCCcEEEEEEEEccCCcceEEEEEEe
Q 025837 103 DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQ 182 (247)
Q Consensus 103 ~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~~w~~~~v~n~gG~~~I~sVev~~ 182 (247)
+..+|.++|.+|..=. |. |..-+=...+ .+.|.|++.| ++|.|.+..-..+|..=.|.+
T Consensus 46 dp~~FyV~P~~f~~~t-----------G~----WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt~~~V~~ 104 (209)
T PF12863_consen 46 DPTNFYVSPAAFGGKT-----------GN----WYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVTGKTVPR 104 (209)
T ss_pred CCcCEEEChHHhCCcc-----------cc----eEecCCCCCc-ceEEEEeCCc-----eEEEEEeccccccccCceecc
Confidence 3789999999997433 22 3332222233 8899998865 677777653344555444433
Q ss_pred cCCCCeEEccccCCceecc---CCCCCCceeEEEEEEecCC
Q 025837 183 KDCRDWVPMRRAFGAVFDI---SNPSPGEINLRFQVSGSAG 220 (247)
Q Consensus 183 ~~~~~W~~m~r~~g~~W~~---~~~~~gp~~lr~rvt~~~G 220 (247)
+..-.++- ..|.+.. .+....+..++|+|++-+|
T Consensus 105 G~~v~FrI----~tNL~~~~~R~g~~~~~~~v~I~V~~P~G 141 (209)
T PF12863_consen 105 GDNVNFRI----DTNLYSIFQRGGYTPGDGPVDIKVTTPSG 141 (209)
T ss_pred CCeEEEEE----cccHHHHhhcCCCCCCcceEEEEEeCCCC
Confidence 22222222 2333332 1222222237788887777
No 24
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=44.09 E-value=66 Score=21.78 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=27.8
Q ss_pred CceEEEEECCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhcc
Q 025837 74 GTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMA 118 (247)
Q Consensus 74 G~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~aF~~la 118 (247)
|.|.||.-.. . .|-|.|.=....+.|.+++.+|..+-
T Consensus 15 ~~CVEva~~~------~--~v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARLP------G--GVAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEeec------c--eEEEecCCCCCCCEEEeCHHHHHHHH
Confidence 8899997422 2 37888875546789999999998764
No 25
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=40.11 E-value=43 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.2
Q ss_pred cccCcEEEEEEEEEeecc---CCcceEEEEee
Q 025837 126 LYSHGVVDVEFERVPCRF---RGYNVMFKVHE 154 (247)
Q Consensus 126 ~~~~G~v~i~~r~V~C~~---~g~~i~~~v~~ 154 (247)
.+..|.+-++||.|+=+- .| .+.|.|++
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 578999999999999873 57 88888754
No 26
>PLN02252 nitrate reductase [NADPH]
Probab=38.78 E-value=79 Score=33.39 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=35.8
Q ss_pred EccCCcceEEEEEEecCCCCeEEccccC-------Cc--ee---ccCC---CCCCceeEEEEEEecCC
Q 025837 168 YVSGQNDVLAVEIWQKDCRDWVPMRRAF-------GA--VF---DISN---PSPGEINLRFQVSGSAG 220 (247)
Q Consensus 168 n~gG~~~I~sVev~~~~~~~W~~m~r~~-------g~--~W---~~~~---~~~gp~~lr~rvt~~~G 220 (247)
+.||...|+.|||+.+++.+|+...... |. .| +..- .+.|...|.+|-++..|
T Consensus 367 ~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g 434 (888)
T PLN02252 367 YSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESM 434 (888)
T ss_pred ECCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCC
Confidence 4455557999999999999999866532 11 24 3321 24567788888887776
No 27
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.37 E-value=47 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=22.7
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025837 209 INLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239 (247)
Q Consensus 209 ~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~ 239 (247)
+.++|++|+....-.|....++|..|+.|+-
T Consensus 72 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqg 102 (155)
T PRK13159 72 LKVSFTVIDKNAATQVEYTGILPDLFRDNQS 102 (155)
T ss_pred cEEEEEEEcCCcEEEEEEccCCCccccCCCe
Confidence 4789999987663455556799999877653
No 28
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=30.94 E-value=28 Score=21.98 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=9.8
Q ss_pred cccCCCCCCCcE
Q 025837 228 NAIPRAWKAGVA 239 (247)
Q Consensus 228 ~vip~~w~~g~~ 239 (247)
.+.|+||++|+.
T Consensus 10 v~tPanW~pGd~ 21 (40)
T PF10417_consen 10 VATPANWKPGDD 21 (40)
T ss_dssp SBBCTTTCTTSG
T ss_pred cccCcCCCCCCC
Confidence 478999998863
No 29
>PRK10301 hypothetical protein; Provisional
Probab=29.90 E-value=79 Score=24.95 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.4
Q ss_pred ccCcEEEEEEEEEeecc---CCcceEEEEe
Q 025837 127 YSHGVVDVEFERVPCRF---RGYNVMFKVH 153 (247)
Q Consensus 127 ~~~G~v~i~~r~V~C~~---~g~~i~~~v~ 153 (247)
+..|.+.|+||-|+=+- .| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 56899999999999763 46 7777664
No 30
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=28.94 E-value=1.6e+02 Score=25.73 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=32.6
Q ss_pred cceEEEEeeCCCCCcEEEEEEEEccCCcceEEEEEEecCCCCeEEcc
Q 025837 146 YNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMR 192 (247)
Q Consensus 146 ~~i~~~v~~gs~~~~w~~~~v~n~gG~~~I~sVev~~~~~~~W~~m~ 192 (247)
+.|.+-|-+-. ++++|.+++++. .+.+..+.+-.-+-..|+.|+
T Consensus 108 k~I~vWV~G~n-~~h~L~v~lrD~--~G~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 108 KSISVWVYGDN-YPHWLEVLLRDA--KGEVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEEECCC-CCceEEEEEEcC--CCCEEEEEeeeecCCceeEEE
Confidence 46777776544 899999999998 667777776434457799887
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.30 E-value=37 Score=25.73 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=4.8
Q ss_pred HHHHHHHhhhh
Q 025837 7 YLLSVVMLLPA 17 (247)
Q Consensus 7 ~~~~~~~~~~~ 17 (247)
++|++||++++
T Consensus 11 l~LA~lLlisS 21 (95)
T PF07172_consen 11 LLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHh
Confidence 33434444444
No 32
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=25.44 E-value=1.1e+02 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=17.7
Q ss_pred eEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025837 210 NLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239 (247)
Q Consensus 210 ~lr~rvt~~~G~~~vv~~~vip~~w~~g~~ 239 (247)
.++|.+|+....-.|+...+.|.+++.|+.
T Consensus 72 ~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 72 TLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp EEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred EEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 789999988653455667899999876654
No 33
>PHA02732 hypothetical protein; Provisional
Probab=24.90 E-value=8.4e+02 Score=25.88 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=56.4
Q ss_pred cCcEEEEEEEEEeeccCCcceEEEEee---CCCCCcEEEEEEE--EccC------CcceEEEEEEecCCCCe-EEccccC
Q 025837 128 SHGVVDVEFERVPCRFRGYNVMFKVHE---NSRYPQYLAVSML--YVSG------QNDVLAVEIWQKDCRDW-VPMRRAF 195 (247)
Q Consensus 128 ~~G~v~i~~r~V~C~~~g~~i~~~v~~---gs~~~~w~~~~v~--n~gG------~~~I~sVev~~~~~~~W-~~m~r~~ 195 (247)
.+|-.-|-||++|-...= |+.+|+.. +-++||-=.++|. |++- ..+-.++.|.--++.-| +.|...|
T Consensus 160 ~~~GQYIAW~f~P~s~T~-NVTIHitS~Ps~~~npysPGIvIYspN~g~q~~Di~~SgF~ALlVtFyng~IWyH~ps~gw 238 (1467)
T PHA02732 160 PAGGQYIAWRFTPPSNTF-NVTIHITSWPSGIGNPYSPGIAIYSPNVGDQPTDIGASGFLALLVDFYNGGIFYHEPNGGW 238 (1467)
T ss_pred CCCccEEEEEEcCCCceE-EEEEEEEeccCCCCCCCCCceEEECCCCCCCccccccCceEEEEEEecCCcEEEECCCCCc
Confidence 345567899999887666 88888874 2236665556665 5542 33446666654455667 4555333
Q ss_pred Ccee-ccCCC-CCCceeEEEEEEecCCCEEEEEecccC
Q 025837 196 GAVF-DISNP-SPGEINLRFQVSGSAGFTWVVANNAIP 231 (247)
Q Consensus 196 g~~W-~~~~~-~~gp~~lr~rvt~~~G~~~vv~~~vip 231 (247)
-.-- ..+.+ ..-||.+++..|+++- -.+.+..|+-
T Consensus 239 ~~L~~slP~Ps~~YPFtfTVifTeNsa-GnVtVs~V~I 275 (1467)
T PHA02732 239 TELSGSLPQPNPAYPFTFTVIFTENSA-GNVTVAEVGI 275 (1467)
T ss_pred eEEEEcCCCCCCCCCEEEEEEEEecCC-CcEEEEEEEE
Confidence 1100 01221 2346666666777333 1355555544
No 34
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=24.24 E-value=92 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=17.6
Q ss_pred ccCcEEEEEEEEEeecc---CCcceEEEEe
Q 025837 127 YSHGVVDVEFERVPCRF---RGYNVMFKVH 153 (247)
Q Consensus 127 ~~~G~v~i~~r~V~C~~---~g~~i~~~v~ 153 (247)
+..|.+.|+||-|+=+- .| .+.|.|+
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 67899999999999542 35 6666653
No 35
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.17 E-value=1e+02 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=22.0
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025837 209 INLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239 (247)
Q Consensus 209 ~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~ 239 (247)
+.++|++|+....-.|+...++|..|+.|+-
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 3688999887663345556799998876653
No 36
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.16 E-value=1.3e+02 Score=25.10 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=21.0
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025837 209 INLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239 (247)
Q Consensus 209 ~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~ 239 (247)
+.++|++|+....-.|+...++|..|+.|+-
T Consensus 78 l~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (160)
T PRK13165 78 LKVSFTLYDAGGSVTVTYEGILPDLFREGQG 108 (160)
T ss_pred eEEEEEEEcCCeEEEEEEcccCCccccCCCe
Confidence 3688888876552344456799988876653
No 37
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=21.51 E-value=1.9e+02 Score=21.72 Aligned_cols=47 Identities=19% Similarity=0.519 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCCeE----EccccCCceeccC--C-------CCCCceeEEEEEEecCCCEEE
Q 025837 175 VLAVEIWQKDCRDWV----PMRRAFGAVFDIS--N-------PSPGEINLRFQVSGSAGFTWV 224 (247)
Q Consensus 175 I~sVev~~~~~~~W~----~m~r~~g~~W~~~--~-------~~~gp~~lr~rvt~~~G~~~v 224 (247)
-++|+|.. .-..|. +|.|...-.|+.. . ...+. ..+++++..+| +++
T Consensus 16 A~~V~l~G-dFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~-~Yky~i~~~~G-~~~ 75 (99)
T cd02854 16 AEEVYLIG-DFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGS-KIKVRMVTPSG-EWI 75 (99)
T ss_pred CCEEEEEc-cCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCC-EEEEEEEeCCC-CEE
Confidence 45566652 224564 4888766789753 2 12556 68888877667 543
No 38
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=20.97 E-value=3.6e+02 Score=20.05 Aligned_cols=65 Identities=11% Similarity=0.291 Sum_probs=44.0
Q ss_pred CcEEEEEEEEccCCcceEEEEEE--ecCC----CCeEEccccCCceecc------CCCCCCceeEEEEEEecCCCEEE
Q 025837 159 PQYLAVSMLYVSGQNDVLAVEIW--QKDC----RDWVPMRRAFGAVFDI------SNPSPGEINLRFQVSGSAGFTWV 224 (247)
Q Consensus 159 ~~w~~~~v~n~gG~~~I~sVev~--~~~~----~~W~~m~r~~g~~W~~------~~~~~gp~~lr~rvt~~~G~~~v 224 (247)
..-|.+.+.|+.....|++|++. ...+ -.|...++.....|.. ...-.|.+.+.+..+..+| +.+
T Consensus 10 ~g~~~v~v~~~~~~~~i~~V~~aVWSe~nGQdDL~WY~a~k~~dg~y~~~i~~~nH~~~~G~Y~vhvY~~~~~G-~~~ 86 (95)
T PF08481_consen 10 NGTFTVTVTNVSSPKGIKSVKFAVWSEENGQDDLKWYTATKQSDGSYSVTIDLSNHKNETGTYHVHVYITDADG-KMI 86 (95)
T ss_pred CCeEEEEEEeccCCCCeeEEEEEEEcCCCCCCccEEEEeeecCCCcEEEEEeHHHCCCCccEEEEEEEEEcCCC-cEE
Confidence 45778888888767888888863 3222 2488887665556653 1234588888888888888 444
Done!